RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy581
(343 letters)
>d2cnda1 b.43.4.2 (A:11-124) Nitrate reductase core domain {Corn
(Zea mays) [TaxId: 4577]}
Length = 114
Score = 119 bits (299), Expect = 5e-34
Identities = 56/112 (50%), Positives = 78/112 (69%)
Query: 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDE 109
++ +L K E++ D R FRF LPS + VLGLPIG+H+ + ATI + RAYTP + +
Sbjct: 2 RIHCRLVAKKELSRDVRLFRFSLPSPDQVLGLPIGKHIFVCATIEGKLCMRAYTPTSMVD 61
Query: 110 HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG 161
G+ DL+VKVYFKN HPKFP+GG M+Q+L+++ VG I+V GP G + Y G
Sbjct: 62 EIGHFDLLVKVYFKNEHPKFPNGGLMTQYLDSLPVGSYIDVKGPLGHVEYTG 113
>d1umka1 b.43.4.2 (A:30-153) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 113 bits (284), Expect = 8e-32
Identities = 69/119 (57%), Positives = 91/119 (76%)
Query: 43 TLVDPDVKVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAY 102
TL PD+K PL+L ++ I+HDTR FRF LPS +H+LGLP+GQH+ LSA I+ V R Y
Sbjct: 5 TLESPDIKYPLRLIDREIISHDTRRFRFALPSPQHILGLPVGQHIYLSARIDGNLVVRPY 64
Query: 103 TPVTSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYLG 161
TP++SD+ G++DLV+KVYFK+ HPKFP GGKMSQ+LE+M++G+ I GP G L Y G
Sbjct: 65 TPISSDDDKGFVDLVIKVYFKDTHPKFPAGGKMSQYLESMQIGDTIEFRGPSGLLVYQG 123
>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 147
Score = 110 bits (275), Expect = 3e-30
Identities = 84/181 (46%), Positives = 103/181 (56%), Gaps = 34/181 (18%)
Query: 163 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSE 222
G+F IR KK P V + MIAGGTGITPMLQ++R I KDP D+T L+FANQ+E
Sbjct: 1 GKFAIRP-DKKSNPIIRTVKSVGMIAGGTGITPMLQVIRAIMKDPDDHTVCHLLFANQTE 59
Query: 223 KDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLM 282
KDILLR ELEE K+ +FKLWYT+DR + W Y GFV+ EMI +HL PP + LVLM
Sbjct: 60 KDILLRPELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEEPLVLM 119
Query: 283 CGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEKLRFS 342
C GPPPMI +AC PNLD +G+ + F
Sbjct: 120 C---------------------------------GPPPMIQYACLPNLDHVGHPTERCFV 146
Query: 343 Y 343
+
Sbjct: 147 F 147
>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays)
[TaxId: 4577]}
Length = 146
Score = 92.3 bits (228), Expect = 2e-23
Identities = 69/183 (37%), Positives = 95/183 (51%), Gaps = 44/183 (24%)
Query: 163 GEFHIRAVSKKDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD-PTDNTKMSLIFANQS 221
G F I + L+MI GG+GITPM Q+++ + +D P D+T+M L++AN++
Sbjct: 1 GSFVINGKQRNARR-------LAMICGGSGITPMYQIIQAVLRDQPEDHTEMHLVYANRT 53
Query: 222 EKDILLREELEEAAAKNPDQFKLWY---TVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDN 278
E DILLR+EL+ AA+ PD+ K+WY V RPE+GWKYS GFV+ ++ EH+ D
Sbjct: 54 EDDILLRDELDRWAAEYPDRLKVWYVIDQVKRPEEGWKYSVGFVTEAVLREHVPEGGDDT 113
Query: 279 LVLMCGPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYSEK 338
L L C GPPPMI FA PNL+K+ Y
Sbjct: 114 LALAC---------------------------------GPPPMIQFAISPNLEKMKYDMA 140
Query: 339 LRF 341
F
Sbjct: 141 NSF 143
>d1cqxa2 b.43.4.2 (A:151-261) Flavohemoglobin, central domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 111
Score = 77.5 bits (190), Expect = 2e-18
Identities = 18/107 (16%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 52 PLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDE--FVARAYTPVTSDE 109
++EK + F E V+ GQ+ S++ + R Y+
Sbjct: 6 TFVIREKRPESDVITSFILEPADGGPVVNFEPGQYTSVAIDVPALGLQQIRQYSLSDMPN 65
Query: 110 HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156
Y V + P G + +++ VG+ + ++ P G
Sbjct: 66 GRTYRISVKREG----GGPQPPGYVSNLLHDHVNVGDQVKLAAPYGS 108
>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin
reductase) {Maize (Zea mays), root isoform [TaxId:
4577]}
Length = 154
Score = 76.1 bits (186), Expect = 2e-17
Identities = 26/149 (17%), Positives = 47/149 (31%), Gaps = 14/149 (9%)
Query: 174 DPPTNLKVTQLSMIAGGTGITPMLQLVRHITKD----PTDNTKMSLIFANQSEKDILLRE 229
DP MIA GTG+ P +R + + L + +L E
Sbjct: 1 DPNATH-----IMIATGTGVAPFRGYLRRMFMEDVPNYRFGGLAWLFLGVANSDSLLYDE 55
Query: 230 ELEEAAAKNPDQFKLWYTVDRPEDGW---KYSTGFVSAEMIAEHLFPPSPDNLVLMCGPP 286
E + PD F+ + R + K E E + CG
Sbjct: 56 EFTSYLKQYPDNFRYDKALSREQKNRSGGKMYVQDKIEEYSDEIFKLLDGGAHIYFCGLK 115
Query: 287 R--KTVKNNLKPEDKKEMKTLFSEFNKMK 313
+++ LK ++ ++ + ++K
Sbjct: 116 GMMPGIQDTLKKVAERRGESWDQKLAQLK 144
>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin
reductase) {Cyanobacterium (Anabaena sp.), pcc 7119
[TaxId: 1167]}
Length = 162
Score = 75.0 bits (183), Expect = 5e-17
Identities = 40/155 (25%), Positives = 60/155 (38%), Gaps = 19/155 (12%)
Query: 173 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNT--------KMSLIFANQSEKD 224
DP N+ M+AGGTGITPM + + KD L+F + +
Sbjct: 3 DDPEANV-----IMLAGGTGITPMRTYLWRMFKDAERAANPEYQFKGFSWLVFGVPTTPN 57
Query: 225 ILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAE----HLFPPSPDNLV 280
IL +EELEE K PD F+L Y + R + + ++ + +
Sbjct: 58 ILYKEELEEIQQKYPDNFRLTYAISREQKNPQGGRMYIQDRVAEHADQLWQLIKNQKTHT 117
Query: 281 LMCGPPR--KTVKNNLKPEDKKEMKTLFSEFNKMK 313
+CGPP + + L KE T +K
Sbjct: 118 YICGPPPMEEGIDAALSAAAAKEGVTWSDYQKDLK 152
>d1gvha2 b.43.4.2 (A:147-253) Flavohemoglobin, central domain
{Escherichia coli [TaxId: 562]}
Length = 107
Score = 68.2 bits (166), Expect = 4e-15
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 11/107 (10%)
Query: 52 PLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFV-ARAYTPVTSDEH 110
++ K + F E V GQ+L + +T
Sbjct: 8 DFRIVAKTPRSALITSFELEPVDGGAVAEYRPGQYLGVWLKPEGFPHQEIRQYSLTRKPD 67
Query: 111 HGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPRGR 156
+ K +GG++S +L + VG+ + + P G
Sbjct: 68 GKGYRI---------AVKREEGGQVSNWLHNHANVGDVVKLVAPAGD 105
>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin
reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}
Length = 160
Score = 66.5 bits (161), Expect = 6e-14
Identities = 32/151 (21%), Positives = 51/151 (33%), Gaps = 15/151 (9%)
Query: 173 KDPPTNLKVTQLSMIAGGTGITPMLQLVRHI----TKDPTDNTKMSLIFANQSEKDILLR 228
KDP + M+ GTGI P + + D N L + +L +
Sbjct: 5 KDPNATI-----IMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYK 59
Query: 229 EELEEAAAKNPDQFKLWYTVDRPEDGWKYSTGFVSAEMIAE----HLFPPSPDNLVLMCG 284
EE E+ K PD F+L + V R + K ++ M + V MCG
Sbjct: 60 EEFEKMKEKAPDNFRLDFAVSREQTNEKGEKMYIQTRMAQYAVELWEMLKKDNTYVYMCG 119
Query: 285 PPR--KTVKNNLKPEDKKEMKTLFSEFNKMK 313
K + + + E ++K
Sbjct: 120 LKGMEKGIDDIMVSLAAAEGIDWIEYKRQLK 150
>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain
{Alcaligenes eutrophus [TaxId: 106590]}
Length = 142
Score = 64.9 bits (157), Expect = 1e-13
Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 6/114 (5%)
Query: 186 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLW 245
+I+GG G+TPM+ +++ + P ++ + ++ +R+ L EAA +
Sbjct: 10 LISGGVGLTPMVSMLKVALQAP--PRQVVFVHGARNSAVHAMRDRLREAAKTYENLDLFV 67
Query: 246 YTVDRPEDGWKYSTGFVSAEMIAEHL--FPPSPDNLVLMCGPPR--KTVKNNLK 295
+ + + + + + PD +CGP + + LK
Sbjct: 68 FYDQPLPEDVQGRDYDYPGLVDVKQIEKSILLPDADYYICGPIPFMRMQHDALK 121
>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK
subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Length = 160
Score = 63.2 bits (153), Expect = 1e-12
Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 13/114 (11%)
Query: 186 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLW 245
+I GG G+ P+ +L + + K +M+++ SE +L E
Sbjct: 13 IIGGGIGVPPLYELAKQLEK---TGCQMTILLGFASENVKILENEFSNLKNVTLKIA--- 66
Query: 246 YTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVKNNLKPEDK 299
+DG + G V M+ + K V ++
Sbjct: 67 -----TDDGSYGTKGHV--GMLMNEIDFEVDALYTCGAPAMLKAVAKKYDQLER 113
>d2piaa1 b.43.4.2 (A:1-103) Phthalate dioxygenase reductase
{Pseudomonas cepacia, db01 [TaxId: 292]}
Length = 103
Score = 61.2 bits (148), Expect = 1e-12
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 110
+ LK+ K +I D F P + G +L+++ R Y+ +
Sbjct: 9 LRLKIASKEKIARDIWSFELTDPQGAPLPPFEAGANLTVAVPNGSR---RTYSLCNDSQE 65
Query: 111 HGYMDLVVKVYFKNVHPKFPDGGKMSQFL-ENMKVGEPINVSGPR 154
+ V + +G S ++ G+ + VS PR
Sbjct: 66 RNRYVIAV--------KRDSNGRGGSISFIDDTSEGDAVEVSLPR 102
>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase
{Escherichia coli [TaxId: 562]}
Length = 135
Score = 61.4 bits (148), Expect = 2e-12
Identities = 26/126 (20%), Positives = 50/126 (39%), Gaps = 6/126 (4%)
Query: 186 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLW 245
+IAGGTG + ++ + + + E+ + ELE + K+P
Sbjct: 10 LIAGGTGFSYARSILLTALARNPNRDITI-YWGGREEQHLYDLCELEALSLKHPGLQV-V 67
Query: 246 YTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPR--KTVKNNLKPEDKKEMK 303
V++PE GW+ TG V ++ +H ++ + + G K ++ E
Sbjct: 68 PVVEQPEAGWRGRTGTVLTAVLQDH--GTLAEHDIYIAGRFEMAKIARDLFCSERNARED 125
Query: 304 TLFSEF 309
LF +
Sbjct: 126 RLFGDA 131
>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein
{Escherichia coli [TaxId: 562]}
Length = 153
Score = 59.8 bits (144), Expect = 1e-11
Identities = 18/106 (16%), Positives = 29/106 (27%), Gaps = 2/106 (1%)
Query: 186 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLW 245
MI GTGI P ++ D +D L + E + +
Sbjct: 11 MIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTR--I 68
Query: 246 YTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVK 291
+ K E AE + + +CG + K
Sbjct: 69 DLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAK 114
>d1krha1 b.43.4.2 (A:106-205) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 100
Score = 58.2 bits (140), Expect = 1e-11
Identities = 16/107 (14%), Positives = 36/107 (33%), Gaps = 11/107 (10%)
Query: 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDE 109
L ++ T F +L + + GQ++++ T+ R+Y+ +
Sbjct: 3 HFEGTLARVENLSDSTITFDIQLDDGQPDIHFLAGQYVNV--TLPGTTETRSYSFSSQPG 60
Query: 110 HHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156
+ +V V + K G+ ++ +GP G
Sbjct: 61 NRLTGFVVRNVPQGKMSE---------YLSVQAKAGDKMSFTGPFGS 98
>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase
{Pseudomonas cepacia, db01 [TaxId: 292]}
Length = 120
Score = 58.8 bits (141), Expect = 2e-11
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 14/102 (13%)
Query: 186 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLW 245
++AGG GITPML + R + + + ++ + + + +EL K+
Sbjct: 13 LVAGGIGITPMLSMARQLRAEGLRSFRL--YYLTRDPEGTAFFDELTSDEW--RSDVKIH 68
Query: 246 YTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPR 287
+ P + P V CGP
Sbjct: 69 HDHGDPTKAF----------DFWSVFEKSKPAQHVYCCGPQA 100
>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 143
Score = 58.4 bits (140), Expect = 3e-11
Identities = 23/116 (19%), Positives = 40/116 (34%), Gaps = 9/116 (7%)
Query: 186 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPD-QFKL 244
+I+ G G TPML ++ + K +++ A ++ +E++E P
Sbjct: 11 LISAGVGQTPMLAMLDTLAKAG-HTAQVNWFHAAENGDVHAFADEVKELGQSLPRFTAHT 69
Query: 245 WYTVDRPEDGWK---YSTGFVSAEMIAEHLFPPSPDNLVLMCGPPR--KTVKNNLK 295
WY D K S G + + P +CGP + L
Sbjct: 70 WYRQPSEADRAKGQFDSEGLMDLSKLEGA--FSDPTMQFYLCGPVGFMQFTAKQLV 123
>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin
reductase) {Escherichia coli [TaxId: 562]}
Length = 148
Score = 57.7 bits (138), Expect = 6e-11
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 8/119 (6%)
Query: 184 LSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFK 243
L M+A GT I P L ++R KD + L+ A + D+ ++E + + +
Sbjct: 9 LWMLATGTAIGPYLSILRLG-KDLDRFKNLVLVHAARYAADLSYLPLMQELEKRYEGKLR 67
Query: 244 LWYTVDRPEDGWKYSTGFVSAEMIAE-----HLFPPSPDNLVLMCGPPR--KTVKNNLK 295
+ V R + + E L + V++CG P+ + + LK
Sbjct: 68 IQTVVSRETAAGSLTGRIPALIESGELESTIGLPMNKETSHVMLCGNPQMVRDTQQLLK 126
>d1tvca1 b.43.4.2 (A:2-110) Methane monooxygenase component C, MmoC
{Methylococcus capsulatus [TaxId: 414]}
Length = 109
Score = 56.2 bits (135), Expect = 1e-10
Identities = 21/110 (19%), Positives = 44/110 (40%), Gaps = 15/110 (13%)
Query: 50 KVPLKLKEKIEINHDTRCFRFELPSAEHVLGLPI----GQHLSLSATINDEFVARAYTPV 105
++ ++ +T F + + + GQ + L TI V+R+Y+P
Sbjct: 10 SFEAEVVGLNWVSSNTVQFLLQKR-PDECGNRGVKFEPGQFMDL--TIPGTDVSRSYSPA 66
Query: 106 TSDEHHGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 155
G ++ +++V P+G + +VG+ ++V GP G
Sbjct: 67 NLPNPEGRLEFLIRVL--------PEGRFSDYLRNDARVGQVLSVKGPLG 108
>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase
FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 165
Score = 55.2 bits (132), Expect = 7e-10
Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 12/140 (8%)
Query: 186 MIAGGTGITPMLQLVRH----ITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQ 241
++ GTGI P + I + M L+F + K + E A
Sbjct: 14 LVGPGTGIAPFRSFWQQRQFDIQHKGMNPCPMVLVFGCRQSKIDHIYREETLQAKNKGVF 73
Query: 242 FKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFP--PSPDNLVLMCGPP------RKTVKNN 293
+L+ R D K V E +AE ++ + +CG K ++
Sbjct: 74 RELYTAYSREPDRPKKYVQDVLQEQLAESVYRALKEQGGHIYVCGDVTMAADVLKAIQRI 133
Query: 294 LKPEDKKEMKTLFSEFNKMK 313
+ + K + ++++
Sbjct: 134 MTQQGKLSEEDAGVFISRLR 153
>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin
reductase) {Azotobacter vinelandii [TaxId: 354]}
Length = 158
Score = 54.2 bits (129), Expect = 1e-09
Identities = 19/125 (15%), Positives = 40/125 (32%), Gaps = 14/125 (11%)
Query: 184 LSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAA------- 236
L M++ GTG+ P + L++ K+ LI + ++ ++ + E
Sbjct: 10 LYMLSTGTGLAPFMSLIQDPEVYE-RFEKVVLIHGVRQVNELAYQQFITEHLPQSEYFGE 68
Query: 237 KNPDQFKLWYTVDRPEDGWKYSTGFVSA----EMIAEHLFPPSPDNLVLMCGPPR--KTV 290
++ + TV R + + D+ ++CG P
Sbjct: 69 AVKEKLIYYPTVTRESFHNQGRLTDLMRSGKLFEDIGLPPINPQDDRAMICGSPSMLDES 128
Query: 291 KNNLK 295
L
Sbjct: 129 CEVLD 133
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase
{Acinetobacter sp. [TaxId: 472]}
Length = 133
Score = 53.0 bits (126), Expect = 2e-09
Identities = 28/112 (25%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 186 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLW 245
M+AGGTGI P L +++ + + +++ + L+F + D++ E+L+ K P +
Sbjct: 10 MLAGGTGIAPFLSMLQVLEQKGSEH-PVRLVFGVTQDCDLVALEQLDALQQKLPWFE--Y 66
Query: 246 YTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPR--KTVKNNLK 295
TV + G+V+ + + L D V +CGP + V++ L
Sbjct: 67 RTVVAHAESQHERKGYVTGHIEYDWLNGGEVD--VYLCGPVPMVEAVRSWLD 116
>d1a8pa1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Azotobacter vinelandii
[TaxId: 354]}
Length = 99
Score = 51.5 bits (123), Expect = 3e-09
Identities = 21/104 (20%), Positives = 42/104 (40%), Gaps = 14/104 (13%)
Query: 57 EKI-EINHDT-RCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHGYM 114
E++ ++H F F+ L GQ + + ++ + RAY+ + +
Sbjct: 6 ERVLSVHHWNDTLFSFKTTRNPS-LRFENGQFVMIGLEVDGRPLMRAYSIASPNYEEHLE 64
Query: 115 DLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVS-GPRGRL 157
+KV G ++ L+++K G+ + VS P G L
Sbjct: 65 FFSIKVQ----------NGPLTSRLQHLKEGDELMVSRKPTGTL 98
>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C,
MmoC {Methylococcus capsulatus [TaxId: 414]}
Length = 141
Score = 52.3 bits (124), Expect = 4e-09
Identities = 21/112 (18%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 186 MIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEEAAAKNPDQFKLW 245
+AGGTG+ P++ +VR + ++ T + + F +E ++ +EL+ +
Sbjct: 13 FVAGGTGLAPVVSMVRQM-QEWTAPNETRIYFGVNTEPELFYIDELKSLERSMR-NLTVK 70
Query: 246 YTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPR--KTVKNNLK 295
V P W+ G + + + + + +CGPP ++
Sbjct: 71 ACVWHPSGDWEGEQGSPIDALREDLESSDANPD-IYLCGPPGMIDAACELVR 121
>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 160
Score = 51.6 bits (123), Expect = 9e-09
Identities = 20/110 (18%), Positives = 34/110 (30%), Gaps = 5/110 (4%)
Query: 186 MIAGGTGITP---MLQLVRHITKDPTDNTKMSLIFANQSE-KDILLREELEEAAAKNPDQ 241
M+ GTGI P +Q + + + + L + + +D L REEL
Sbjct: 12 MVGPGTGIAPFMGFIQERAWLREQGKEVGETLLYYGCRRSDEDYLYREELARFHKDGALT 71
Query: 242 FKLWYTVDRPEDGWKYSTGFVSAEMIAEHLFPPSPDNLVLMCGPPRKTVK 291
L R + Y + + + + G R K
Sbjct: 72 Q-LNVAFSREQAHKVYVQHLLKRDREHLWKLIHEGGAHIYVAGDARNMAK 120
>d1fdra1 b.43.4.2 (A:2-100) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 99
Score = 50.1 bits (119), Expect = 1e-08
Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 14/105 (13%)
Query: 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 110
V K+ + P GQ L I+ E V RAY+ V S ++
Sbjct: 4 VTGKVTKVQNWTDALFSLTVHAPVLPF----TAGQFTKLGLEIDGERVQRAYSYVNSPDN 59
Query: 111 HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRG 155
+V V GK+S L +K G+ + V
Sbjct: 60 PDLEFYLVTV----------PDGKLSPRLAALKPGDEVQVVSEAA 94
>d1ep3b1 b.43.4.2 (B:2-102) Dihydroorotate dehydrogenase B, PyrK
subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}
Length = 101
Score = 49.8 bits (118), Expect = 1e-08
Identities = 14/104 (13%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 53 LKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEHHG 112
+ + + E+ ++ + + GQ L L+ + R + + D+
Sbjct: 7 MTVVSQREVAYNIFEMVLKGTLVDE--MDLPGQFLHLAVPNGAMLLRRPISISSWDKRAK 64
Query: 113 YMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156
++ ++ D + L ++ G ++V GP G
Sbjct: 65 TCTILYRIG---------DETTGTYKLSKLESGAKVDVMGPLGN 99
>d1fnda1 b.43.4.2 (A:19-154) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Spinach (Spinacia
oleracea) [TaxId: 3562]}
Length = 136
Score = 50.1 bits (119), Expect = 2e-08
Identities = 19/103 (18%), Positives = 32/103 (31%), Gaps = 11/103 (10%)
Query: 62 NHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEF----VARAY----TPVTSDEHHGY 113
+T F GQ + + D+ R Y + +
Sbjct: 36 PGETWHMVFSHEGEIPYR---EGQSVGVIPDGEDKNGKPHKLRLYSIASSALGDFGDAKS 92
Query: 114 MDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGR 156
+ L VK G S FL ++K G + ++GP G+
Sbjct: 93 VSLCVKRLIYTNDAGETIKGVCSNFLCDLKPGAEVKLTGPVGK 135
>d2bmwa1 b.43.4.2 (A:9-141) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Cyanobacterium (Anabaena
sp.), pcc 7119 [TaxId: 1167]}
Length = 133
Score = 47.4 bits (112), Expect = 2e-07
Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 12/115 (10%)
Query: 54 KLKEKIEINHDT---RCFRFELPSAEHVLGLPIGQHLSLSATIND----EFVARAYTPVT 106
K+ + + + L GQ + + D R Y+ +
Sbjct: 16 KVISNEPLVKEGGIGIVQHIKFDLTGGNLKYIEGQSIGIIPPGVDKNGKPEKLRLYSIAS 75
Query: 107 SDEHHGYMDLVVKVYFKNVHP-----KFPDGGKMSQFLENMKVGEPINVSGPRGR 156
+ D + + + + G S +L +++ G + ++GP G+
Sbjct: 76 TRHGDDVDDKTISLCVRQLEYKHPESGETVYGVCSTYLTHIEPGSEVKITGPVGK 130
>d1qfja1 b.43.4.2 (A:1-97) NAD(P)H:flavin oxidoreductase
{Escherichia coli [TaxId: 562]}
Length = 97
Score = 44.4 bits (104), Expect = 9e-07
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 15/110 (13%)
Query: 51 VPLKLKEKIEINHDTRCFRFELPSAEHVLGLPIGQHLSLSATINDEFVARAYTPVTSDEH 110
+ K+ I R +A GQ+L + + DE R ++ ++ +
Sbjct: 3 LSCKVTSVEAITDTVYRVRIVPDAA---FSFRAGQYLMV---VMDERDKRPFSMASTPDE 56
Query: 111 HGYMDLVVKVYFKNVHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYL 160
G+++L + ++ + I V P G A+L
Sbjct: 57 KGFIELHIG--------ASEINLYAKAVMDRILKDHQIVVDIPHGE-AWL 97
>d1jb9a1 b.43.4.2 (A:6-162) Ferredoxin reductase (flavodoxin
reductase) N-terminal domain {Maize (Zea mays), root
isoform [TaxId: 4577]}
Length = 157
Score = 30.7 bits (69), Expect = 0.13
Identities = 25/156 (16%), Positives = 39/156 (25%), Gaps = 24/156 (15%)
Query: 25 SKSKKKDKASRSSKKELKTLVDPDVKVPLKLKEKIEIN-----HDTRCFRFELPSAEHVL 79
SK S+K+ P + + +T +
Sbjct: 3 SKVSVAPLHLESAKEPPLNTYKPKEPFTATIVSVESLVGPKAPGETCHIVIDHGGNVPYW 62
Query: 80 GLPIGQHLSLSAT------INDEFVARAY----TPVTSDEHHGYMDLVVKV-----YFKN 124
GQ + R Y T + L V+
Sbjct: 63 ---EGQSYGVIPPGENPKKPGAPQNVRLYSIASTRYGDNFDGRTGSLCVRRAVYYDPETG 119
Query: 125 VHPKFPDGGKMSQFLENMKVGEPINVSGPRGRLAYL 160
G S FL N K G+ I ++GP G++ L
Sbjct: 120 KEDPSK-NGVCSNFLCNSKPGDKIQLTGPSGKIMLL 154
>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId:
4932]}
Length = 135
Score = 27.9 bits (62), Expect = 0.90
Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 16/92 (17%)
Query: 12 IVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLK-EKIEINHDTRCFRF 70
IV + ++ SK + + S V LK+K + + ++
Sbjct: 34 IVDKDDELIFKKKFTSKLDEAGKKKSTD----------LVKLKIKVISEDFDMKDEYLKY 83
Query: 71 -----ELPSAEHVLGLPIGQHLSLSATINDEF 97
S + +P+G++LS + F
Sbjct: 84 KGVTVTDESGASNVDIPVGKYLSFTLDYVYPF 115
>d2iela1 c.26.2.4 (A:2-135) Hypothetical protein TTC0031 {Thermus
thermophilus [TaxId: 274]}
Length = 134
Score = 26.4 bits (58), Expect = 3.0
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 215 LIFANQSEKDILLREELEEAAAKNPDQFKLWYTVDRPEDGWKYSTG 260
L+ A+++ K L +L+E A++P+ + P GW Y
Sbjct: 4 LVVAHRTAKSPELAAKLKELLAQDPEARFVLLVPAVPPPGWVYEEN 49
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 27.3 bits (59), Expect = 3.2
Identities = 5/26 (19%), Positives = 12/26 (46%), Gaps = 4/26 (15%)
Query: 293 NLKPED----KKEMKTLFSEFNKMKI 314
++ P D +E++ LF+ +
Sbjct: 1 HVSPFDWRYGSEEIRRLFTNEAIINA 26
>d1axib2 b.1.2.1 (B:131-236) Growth hormone receptor {Human (Homo
sapiens) [TaxId: 9606]}
Length = 106
Score = 25.7 bits (55), Expect = 4.9
Identities = 13/84 (15%), Positives = 23/84 (27%), Gaps = 7/84 (8%)
Query: 174 DPPTNLKVTQLSMIAGGTGITPMLQLVRHITKDPTDNTKMSLIFANQSEKDILLREELEE 233
DPP L T L++ G ++ M L + ++ +E E
Sbjct: 2 DPPIALNWTLLNVSLTGIHADIQVR-WEAPRNADIQKGWMVLEY------ELQYKEVNET 54
Query: 234 AAAKNPDQFKLWYTVDRPEDGWKY 257
V + +Y
Sbjct: 55 KWKMMDPILTTSVPVYSLKVDKEY 78
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 26.4 bits (57), Expect = 5.3
Identities = 5/15 (33%), Positives = 8/15 (53%)
Query: 300 KEMKTLFSEFNKMKI 314
MK L++E K +
Sbjct: 7 SPMKDLWTEEAKYRR 21
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 26.5 bits (57), Expect = 5.4
Identities = 3/15 (20%), Positives = 9/15 (60%)
Query: 300 KEMKTLFSEFNKMKI 314
M+ +FS+ +++
Sbjct: 11 PAMREIFSDRGRLQG 25
>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 126
Score = 25.1 bits (55), Expect = 6.9
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 12 IVVVGFIISAIQESKSKKKDKASRSSKKELKTLVDPDVKVPLKLK-EKIEINHDTRCFRF 70
I+ G +SAI + ++ RS ++E + ++LK EKIE R
Sbjct: 29 ILSEGDEVSAITFRRVEESADVQRSRERERI-------PITIRLKVEKIEFQDFDNRLRI 81
Query: 71 ELPSAEHVLGLPIGQHLSLSATINDEF 97
E G+H S++ T++ E
Sbjct: 82 LGTVIEGPED-TKGKHQSITVTVDSEI 107
>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis
[TaxId: 1392]}
Length = 297
Score = 25.5 bits (55), Expect = 9.9
Identities = 7/53 (13%), Positives = 18/53 (33%)
Query: 284 GPPRKTVKNNLKPEDKKEMKTLFSEFNKMKIHEGPPPMINFACKPNLDKLGYS 336
G P+ T + ++ + + + + +I P +IN +
Sbjct: 35 GAPQNTRRKPIEELNIEAGRKHMEQNGIEEIIIHAPYIINVGNTTKPETFQLG 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.396
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,302,175
Number of extensions: 62709
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 46
Length of query: 343
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 257
Effective length of database: 1,226,816
Effective search space: 315291712
Effective search space used: 315291712
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.4 bits)