BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5810
(250 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%)
Query: 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+ S+G+
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX 140
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
A + KF+ETS + + EL GI RQ
Sbjct: 141 AVVFDXKFIETSAAVQHNVKELFEGIVRQ 169
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%)
Query: 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+ S+G+
Sbjct: 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC 171
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
A + KF+ETS + + EL GI RQ
Sbjct: 172 AVVFDCKFIETSAAVQHNVKELFEGIVRQ 200
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%)
Query: 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+ S+G+
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX 140
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
A + KF+ETS + + EL GI RQ
Sbjct: 141 AVVFDCKFIETSAAVQHNVKELFEGIVRQ 169
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 55/89 (61%)
Query: 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+ S+G+
Sbjct: 81 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC 140
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
A + KF+ETS + + EL GI RQ
Sbjct: 141 AVVFDCKFIETSAAVQHNVKELFEGIVRQ 169
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
D F+IV+SV +R++F K + L L + + VILV NK+DL R R+V+ +G+ LA
Sbjct: 98 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 157
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
K +ETS L + T EL G RQ
Sbjct: 158 GTLSCKHIETSAALHHNTRELFEGAVRQ 185
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
D F+IV+SV +R++F K + L L + + VILV NK+DL R R+V+ +G+ LA
Sbjct: 77 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 136
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
K +ETS L + T EL G RQ
Sbjct: 137 GTLSCKHIETSAALHHNTRELFEGAVRQ 164
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 51/88 (57%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
D F+IV+SV +R++F K + L L + + VILV NK+DL R R+V+ +G+ LA
Sbjct: 87 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 146
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
K +ETS L + T EL G RQ
Sbjct: 147 GTLSCKHIETSAALHHNTRELFEGAVRQ 174
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
D +VIVYSV ++ +F+KA ++ L ++ + +ILV NK+DL R R+V+ +G+ A
Sbjct: 74 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA 133
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
+ KF+ETS L + L G+ RQ
Sbjct: 134 VVFDCKFIETSAALHHNVQALFEGVVRQ 161
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
D +VIVYSV ++ +F+KA ++ L ++ + +ILV NK+DL R R+V+ +G+ A
Sbjct: 79 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA 138
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
+ KF+ETS L + L G+ RQ
Sbjct: 139 VVFDCKFIETSAALHHNVQALFEGVVRQ 166
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
D +VIVYSV ++ +F+KA ++ L ++ + +ILV NK+DL R R+V+ +G+ A
Sbjct: 79 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA 138
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
+ KF+ETS L + L G+ RQ
Sbjct: 139 VVFDCKFIETSAALHHNVQALFEGVVRQ 166
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%), Gaps = 4/83 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
+V+VYSV +F+ E + + L + V+LV NKADL R+V +GKKLA +
Sbjct: 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES 158
Query: 183 WGVKFVETSVGLVYKTDELLVGI 205
WG F+E+S + ++L GI
Sbjct: 159 WGATFMESSA----RENQLTQGI 177
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 47/83 (56%)
Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY 181
+VIVYS+ +R +F+ A ++ L + +ILV NKADL R R+V+ +G+ A
Sbjct: 80 AYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV 139
Query: 182 AWGVKFVETSVGLVYKTDELLVG 204
+ KF+ETS L + EL G
Sbjct: 140 VFDCKFIETSATLQHNVAELFEG 162
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 50/86 (58%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F++VYS++ +++F+ + M + K + VILV NK DLE R+V+ S+G+ LA
Sbjct: 78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE 137
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
WG F+ETS DEL I RQ
Sbjct: 138 WGCPFMETSAKSKTMVDELFAEIVRQ 163
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 106 PFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 165
F + E +++T + F++V+SV +R +F++ + + K E +IL+ NKADL
Sbjct: 65 EFGAMREQYMRT--GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADL 122
Query: 166 ERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE 200
+ +RQVT +G++LA V ++E S + D+
Sbjct: 123 DHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQ 157
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 6/106 (5%)
Query: 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
F + E +++T D F+IVYSV ++ +F+ + + + K +ILVANK DL
Sbjct: 74 FSAMREQYMRT--GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 131
Query: 167 RRRQVTHSDGKKLAYAWGVKFVETSVGL----VYKTDELLVGIARQ 208
R+VT GK++A + + ++ETS V KT LV + RQ
Sbjct: 132 HLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ 177
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
F + E +++T D F+IVYSV ++ +F+ + + + K +ILVANK DL
Sbjct: 79 FSAMREQYMRT--GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136
Query: 167 RRRQVTHSDGKKLAYAWGVKFVETSV 192
R+VT GK++A + + ++ETS
Sbjct: 137 HLRKVTRDQGKEMATKYNIPYIETSA 162
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
F + E +++T D F+IVYSV ++ +F+ + + + K +ILVANK DL
Sbjct: 79 FSAMREQYMRT--GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136
Query: 167 RRRQVTHSDGKKLAYAWGVKFVETSV 192
R+VT GK++A + + ++ETS
Sbjct: 137 HLRKVTRDQGKEMATKYNIPYIETSA 162
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
F + E +++T D F+IVYSV ++ +F+ + + + K +ILVANK DL
Sbjct: 79 FSAMREQYMRT--GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLM 136
Query: 167 RRRQVTHSDGKKLAYAWGVKFVETSV 192
R+VT GK++A + + ++ETS
Sbjct: 137 HLRKVTRDQGKEMATKYNIPYIETSA 162
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 79 FVQTYHPDV--FFIVYSDTNHTQRCLTPMPFCSQVEN--FVQTYHPDV--FVIVYSVIER 132
FV +Y P + F N + L + Q E F QTY D+ +++VYSV
Sbjct: 26 FVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSI 85
Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191
K+F+ + + L D + ++LV NK DL R +++ +GK LA +W F+E+S
Sbjct: 86 KSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 144
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 114 FVQTYHPDV--FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 171
F QTY D+ +++VYSV K+F+ + + L D + ++LV NK DL R +
Sbjct: 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 129
Query: 172 THSDGKKLAYAWGVKFVETS 191
++ +GK LA +W F+E+S
Sbjct: 130 SYEEGKALAESWNAAFLESS 149
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 114 FVQTYHPDV--FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 171
F QTY D+ +++VYSV K+F+ + + L D + ++LV NK DL R +
Sbjct: 70 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 129
Query: 172 THSDGKKLAYAWGVKFVETSV 192
++ +GK LA +W F+E+S
Sbjct: 130 SYEEGKALAESWNAAFLESSA 150
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 114 FVQTYHPDV--FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV 171
F QTY D+ +++VYSV K+F+ + + L D + ++LV NK DL R +
Sbjct: 68 FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI 127
Query: 172 THSDGKKLAYAWGVKFVETS 191
++ +GK LA +W F+E+S
Sbjct: 128 SYEEGKALAESWNAAFLESS 147
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
F + E +++ H F++V+++ +R++F + + + K + V+LV NKADLE
Sbjct: 70 FGAMREQYMRAGH--GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLE 127
Query: 167 RRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIAR 207
+RQV S+ + V + E S L DE + R
Sbjct: 128 SQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVR 168
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLERRRQVTHSDGKKLAY 181
F++V+S+ E ++F + + + K +K +++V NK+DLE RRQV + + A
Sbjct: 82 FLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAE 141
Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
WGV++VETS D++ + R+
Sbjct: 142 EWGVQYVETSAKTRANVDKVFFDLMRE 168
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 1/87 (1%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLERRRQVTHSDGKKLAY 181
F++V+S+ E ++F + + + K +K +++V NK+DLE RRQV + + A
Sbjct: 78 FLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAE 137
Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
WGV++VETS D++ + R+
Sbjct: 138 EWGVQYVETSAKTRANVDKVFFDLMRE 164
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 79 FVQTYHPDVFFIVYSDTN-HTQRCLTPMPFCSQVENFVQTY-----HPDVFVIVYSVIER 132
FV+ Y P + Q+C+ + + E F + F +VYS+ +
Sbjct: 30 FVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ 89
Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETS 191
TF +D+ + + K + +ILV NK DLE R V G+ LA W F+E+S
Sbjct: 90 STFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESS 149
Query: 192 VGLVYKTDELLVGIARQ 208
+E+ + RQ
Sbjct: 150 AKSKINVNEIFYDLVRQ 166
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 79 FVQTYHPDVFFIVYSDTN-HTQRCLTPMPFCSQVENFVQTY-----HPDVFVIVYSVIER 132
FV+ Y P + Q+C+ + + E F + F +VYS+ +
Sbjct: 28 FVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ 87
Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETS 191
TF +D+ + + K + +ILV NK DLE R V G+ LA W F+E+S
Sbjct: 88 STFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESS 147
Query: 192 VGLVYKTDELLVGIARQ 208
+E+ + RQ
Sbjct: 148 AKSKINVNEIFYDLVRQ 164
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 7/137 (5%)
Query: 79 FVQTYHPDVFFIVYSDTN-HTQRCLTPMPFCSQVENFVQTY-----HPDVFVIVYSVIER 132
FV+ Y P + Q+C+ + + E F + F +VYS+ +
Sbjct: 28 FVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQ 87
Query: 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETS 191
TF +D+ + + K + +ILV NK DLE R V G+ LA W F+E+S
Sbjct: 88 STFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESS 147
Query: 192 VGLVYKTDELLVGIARQ 208
+E+ + RQ
Sbjct: 148 AKSKINVNEIFYDLVRQ 164
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F +VYS+ + TF +D+ + + K + +ILV NK DLE R V G+ LA
Sbjct: 78 FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ 137
Query: 183 W-GVKFVETSVGLVYKTDELLVGIARQ 208
W F+E+S +E+ + RQ
Sbjct: 138 WCNCAFLESSAKSKINVNEIFYDLVRQ 164
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+ + K A
Sbjct: 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 148
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
W V +VETS D++ + R+
Sbjct: 149 WNVNYVETSAKTRANVDKVFFDLMRE 174
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+ + K A
Sbjct: 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 152
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
W V +VETS D++ + R+
Sbjct: 153 WNVNYVETSAKTRANVDKVFFDLMRE 178
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+ + K A
Sbjct: 81 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
W V +VETS D++ + R+
Sbjct: 141 WNVNYVETSAKTRANVDKVFFDLMRE 166
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+ + K A
Sbjct: 81 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
W V +VETS D++ + R+
Sbjct: 141 WNVNYVETSAKTRANVDKVFFDLMRE 166
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAY 181
+IVY V +R +F + ++ + +Y E +LV NK DL +R VT +G++LA
Sbjct: 85 IIIVYDVTDRDSFDNVKQWIQEI--DRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELAD 142
Query: 182 AWGVKFVETSVGLVYKTDE 200
+ G+KF+ETS Y ++
Sbjct: 143 SHGIKFIETSAKNAYNVEQ 161
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+ + K A
Sbjct: 79 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ 138
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
W V +VETS D++ + R+
Sbjct: 139 WNVNYVETSAKTRANVDKVFFDLMRE 164
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
FV+VY + +R +F++ + L + K +ILV NKADL+ RQV+ +G+KLA
Sbjct: 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE 161
Query: 183 WGVKFVETSV 192
F E S
Sbjct: 162 LACAFYECSA 171
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 1/81 (1%)
Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLERRRQVTHSDGKKLA 180
F++VYS+ R++ ++ + + + + + K E ++LV NK D R+V S+ + LA
Sbjct: 77 AFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALA 136
Query: 181 YAWGVKFVETSVGLVYKTDEL 201
W F+ETS L + EL
Sbjct: 137 RTWKCAFMETSAKLNHNVKEL 157
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 123 FVIVYSVIERKTFKKAED---MLKTL-WDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
F+++Y + +++F +D +KT WD+ VILV NK DLE R V DG++
Sbjct: 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNA-----QVILVGNKCDLEDERVVPAEDGRR 152
Query: 179 LAYAWGVKFVETSV 192
LA G +F E S
Sbjct: 153 LADDLGFEFFEASA 166
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F++++ + +++F + + L + Y ++L+ NKADL +R+V ++LA
Sbjct: 111 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK 170
Query: 183 WGVKFVETSV 192
+G+ + ETS
Sbjct: 171 YGIPYFETSA 180
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F++++ + +++F + + L + Y ++L+ NKADL +R+V ++LA
Sbjct: 97 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEK 156
Query: 183 WGVKFVETSV 192
+G+ + ETS
Sbjct: 157 YGIPYFETSA 166
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F++++ + +++F + + L + Y ++L+ NKADL +R+V ++LA
Sbjct: 97 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEK 156
Query: 183 WGVKFVETSV 192
+G+ + ETS
Sbjct: 157 YGIPYFETSA 166
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
++VY + K+F + ++ + + + +IL NK D+ +RQV+ G+KLA +
Sbjct: 83 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL-GNKCDVNDKRQVSKERGEKLALDY 141
Query: 184 GVKFVETSV 192
G+KF+ETS
Sbjct: 142 GIKFMETSA 150
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 156 VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
++L+ NK+DLE RR+V +G+ A G+ F+ETS +E + A++
Sbjct: 118 IMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKE 170
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
++VY + K+F + ++ + + + +IL NK D+ +RQV+ G+KLA +
Sbjct: 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMIL-GNKCDVNDKRQVSKERGEKLALDY 143
Query: 184 GVKFVETSV 192
G+KF+ETS
Sbjct: 144 GIKFMETSA 152
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLAY 181
++VY + R+TF L+ D++ ++L+ NK+DLE RR V +G+ A
Sbjct: 98 LLVYDITRRETFNHLTSWLE---DARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR 154
Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
G+ F+ETS +E + A++
Sbjct: 155 EHGLIFMETSAKTACNVEEAFINTAKE 181
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVA-NKADLERRRQVTHSDGKKLAYA 182
VIVY + ++ +F + +K L ++ E V+ +A NK DL R+V D K+ A +
Sbjct: 100 VIVYDITKQDSFYTLKKWVKEL--KEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES 157
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
G VETS +EL GI+RQ
Sbjct: 158 IGAIVVETSAKNAINIEELFQGISRQ 183
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 7/88 (7%)
Query: 122 VFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
V V+VY + +F + D ++T S I ++LV NK DL +RQV+ +G++
Sbjct: 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSDVI----IMLVGNKTDLSDKRQVSTEEGER 144
Query: 179 LAYAWGVKFVETSVGLVYKTDELLVGIA 206
A V F+ETS Y +L +A
Sbjct: 145 KAKELNVMFIETSAKAGYNVKQLFRRVA 172
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAYA 182
++VY + +++TF +K + KY E A ++LV NK D E R++T G+K A
Sbjct: 103 ILVYDITKKETFDDLPKWMKMI--DKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQ 160
Query: 183 W-GVKFVETSVGLVYKTDELLV 203
G++F E S + DE+ +
Sbjct: 161 ITGMRFCEASAKDNFNVDEIFL 182
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 122 VFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
V V+VY + +F++ D ++T S I ++LV NK DL +RQ+T +G++
Sbjct: 77 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDVI----IMLVGNKTDLADKRQITIEEGEQ 132
Query: 179 LAYAWGVKFVETSVGLVYKTDELLVGIA 206
A V F+ETS Y +L +A
Sbjct: 133 RAKELSVMFIETSAKTGYNVKQLFRRVA 160
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 122 VFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
V V+VY + +F++ D ++T S I ++LV NK DL +RQV+ +G++
Sbjct: 91 VAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI----IMLVGNKTDLADKRQVSIEEGER 146
Query: 179 LAYAWGVKFVETSVGLVYKTDELLVGIA 206
A V F+ETS Y +L +A
Sbjct: 147 KAKELNVMFIETSAKAGYNVKQLFRRVA 174
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F++ + + +++F + L + Y ++L+ NKADL +R+V ++LA
Sbjct: 97 FLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEK 156
Query: 183 WGVKFVETSV 192
+G+ + ETS
Sbjct: 157 YGIPYFETSA 166
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
++VY V + +TF + KT+ + E ++LV NK+D+E R VT G+ LA
Sbjct: 84 ILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKEL 141
Query: 184 GVKFVETSV 192
G+ F+E+S
Sbjct: 142 GIPFIESSA 150
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F++ + + +++F + L + Y ++L+ NKADL +R+V ++LA
Sbjct: 97 FLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEK 156
Query: 183 WGVKFVETSV 192
+G+ + ETS
Sbjct: 157 YGIPYFETSA 166
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 124 VIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
V+VY + +F++ D ++T S I ++LV NK DL +RQV+ +G++ A
Sbjct: 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVI----IMLVGNKTDLADKRQVSIEEGERKA 145
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIA 206
V F+ETS Y +L +A
Sbjct: 146 KELNVMFIETSAKAGYNVKQLFRRVA 171
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 122 VFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
V V+VY + +F++ D ++T S I ++LV NK DL +RQV+ +G++
Sbjct: 81 VAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI----IMLVGNKTDLADKRQVSIEEGER 136
Query: 179 LAYAWGVKFVETSVGLVYKTDELLVGIA 206
A V F+ETS Y +L +A
Sbjct: 137 KAKELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
++VY + + +TF + KT+ + E ++LV NK+D+E R VT G+ LA
Sbjct: 80 ILVYDITDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKEL 137
Query: 184 GVKFVETSV 192
G+ F+E+S
Sbjct: 138 GIPFIESSA 146
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
++VY V + +TF + KT+ + E ++LV NK+D+E R VT G+ LA
Sbjct: 96 IILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKE 153
Query: 183 WGVKFVETSV 192
G+ F+E+S
Sbjct: 154 LGIPFIESSA 163
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 122 VFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
V V+VY + +F++ D ++T S I ++LV NK DL +RQV+ +G++
Sbjct: 76 VAVVVYDITNVNSFQQTTKWIDDVRTERGSDVI----IMLVGNKTDLADKRQVSIEEGER 131
Query: 179 LAYAWGVKFVETSVGLVYKTDELLVGIA 206
A V F+ETS Y +L +A
Sbjct: 132 KAKELNVMFIETSAKAGYNVKQLFRRVA 159
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 9/74 (12%)
Query: 123 FVIVYSVIERKTFKKAED---MLKTL-WDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
F+++Y + ++F +D +KT WD+ V+LV NK D+E R V+ G++
Sbjct: 81 FILMYDITNEESFNAVQDWSTQIKTYSWDNA-----QVLLVGNKCDMEDERVVSSERGRQ 135
Query: 179 LAYAWGVKFVETSV 192
LA G +F E S
Sbjct: 136 LADHLGFEFFEASA 149
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + ++TF +A+ +K L + VI L NKADL +R V + + + A
Sbjct: 85 IVVYDITNQETFARAKTWVKEL--QRQASPSIVIALAGNKADLANKRMVEYEEAQAYADD 142
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS ++L + IA++
Sbjct: 143 NSLLFMETSAKTAMNVNDLFLAIAKK 168
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSK-YIGEKAVILVANKADLERRRQVTHSDGKKLA 180
F++V+SV +++ ++ + K + K + + V+LV NK D E +R+V + + +A
Sbjct: 82 AFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVA 140
Query: 181 YAWGVKFVETSVGLVYKTDEL 201
W F+ETS + Y EL
Sbjct: 141 QEWKCAFMETSAKMNYNVKEL 161
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGE--KAVILVANKADLERRRQVTHSDGKKLAY 181
++VY + R T+ L D++ + +IL+ NKADLE +R VT+ + K+ A
Sbjct: 92 LMVYDITRRSTYNHLSSWLT---DARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE 148
Query: 182 AWGVKFVETSV 192
G+ F+E S
Sbjct: 149 ENGLLFLEASA 159
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 124 VIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
V+VY + +F++ D ++T S I ++LV NK DL +RQV+ +G++ A
Sbjct: 83 VVVYDITNVNSFQQTTKWIDDVRTERGSDVI----IMLVGNKTDLADKRQVSIEEGERKA 138
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIA 206
V F+ETS Y +L +A
Sbjct: 139 KELNVMFIETSAKAGYNVKQLFRRVA 164
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGE--KAVILVANKADLERRRQVTHSDGKKLAY 181
++VY + R T+ L D++ + +IL+ NKADLE +R VT+ + K+ A
Sbjct: 107 LMVYDITRRSTYNHLSSWLT---DARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE 163
Query: 182 AWGVKFVETSV 192
G+ F+E S
Sbjct: 164 ENGLLFLEASA 174
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 155 AVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
A++L+ NK D R V DG+KLA +G+ F+ETS D IA++
Sbjct: 118 ALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKE 171
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
++VY V + +TF + KT+ + E ++LV NK+D E R VT G+ LA
Sbjct: 80 ILVYDVTDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDXE-TRVVTADQGEALAKEL 137
Query: 184 GVKFVETSV 192
G+ F+E+S
Sbjct: 138 GIPFIESSA 146
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F++++ + ++F + + L Y ++L NK+DLE +R V + ++LA
Sbjct: 97 FLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK 156
Query: 183 WGVKFVETSV 192
+G+ + ETS
Sbjct: 157 YGIPYFETSA 166
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 123 FVIVYSVIERKTFKKAED---MLKTL-WDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
F+++Y + ++F +D +KT WD+ VILV NK D+E R V G+
Sbjct: 99 FILMYDITNEESFNAVQDWATQIKTYSWDNA-----QVILVGNKCDMEEERVVPTEKGQL 153
Query: 179 LAYAWGVKFVETSV 192
LA G F E S
Sbjct: 154 LAEQLGFDFFEASA 167
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
++VY + + +TF + KT+ + E ++LV NK+D E R VT G+ LA
Sbjct: 80 ILVYDITDERTFTNIKQWFKTV-NEHANDEAQLLLVGNKSDXE-TRVVTADQGEALAKEL 137
Query: 184 GVKFVETSV 192
G+ F+E+S
Sbjct: 138 GIPFIESSA 146
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + TF +A++ +K L + VI L NKADL +R V + + A
Sbjct: 82 IVVYDITNTDTFARAKNWVKEL--QRQASPNIVIALAGNKADLASKRAVEFQEAQAYADD 139
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E+ + IA++
Sbjct: 140 NSLLFMETSAKTAMNVNEIFMAIAKK 165
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + TF +A++ +K L + VI L NKADL +R V + + A
Sbjct: 82 IVVYDITNTDTFARAKNWVKEL--QRQASPNIVIALAGNKADLASKRAVEFQEAQAYADD 139
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E+ + IA++
Sbjct: 140 NSLLFMETSAKTAMNVNEIFMAIAKK 165
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + TF +A++ +K L + VI L NKADL +R V + + A
Sbjct: 80 IVVYDITNTDTFARAKNWVKEL--QRQASPNIVIALAGNKADLASKRAVEFQEAQAYADD 137
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E+ + IA++
Sbjct: 138 NSLLFMETSAKTAMNVNEIFMAIAKK 163
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 16/123 (13%)
Query: 89 FIVYSDTNHTQ-RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWD 147
F+++ + R L PM + +IVY + + +TF ++ ++ L
Sbjct: 56 FLIWDTAGQERFRALAPMYYRGSA----------AAIIVYDITKEETFSTLKNWVREL-- 103
Query: 148 SKYIGEKAVI--LVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGI 205
+ G +++ + NK DL R+V D K A + FVETS +EL + I
Sbjct: 104 -RQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEI 162
Query: 206 ARQ 208
+R+
Sbjct: 163 SRR 165
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + ++F +A++ +K L + VI L NKADL +R V + + A
Sbjct: 83 IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E+ + IA++
Sbjct: 141 NSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAYA 182
++VY V ++++F + L+ + +Y E +LV NK DL ++ V ++ K+ A +
Sbjct: 93 IVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS 150
Query: 183 WGVKFVETSV 192
G+ F+ETS
Sbjct: 151 LGIPFLETSA 160
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + ++F +A++ +K L + VI L NKADL +R V + + A
Sbjct: 83 IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E+ + IA++
Sbjct: 141 NSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + ++F +A++ +K L + VI L NKADL +R V + + A
Sbjct: 83 IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E+ + IA++
Sbjct: 141 NSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 37.4 bits (85), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + ++F +A++ +K L + VI L NKADL +R V + + A
Sbjct: 84 IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 141
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E+ + IA++
Sbjct: 142 NSLLFMETSAKTSMNVNEIFMAIAKK 167
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 15/111 (13%)
Query: 100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-- 157
R L PM + +IVY + + +TF ++ ++ L + G +++
Sbjct: 69 RALAPMYYRGSA----------AAIIVYDITKEETFSTLKNWVREL---RQHGPPSIVVA 115
Query: 158 LVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
+ NK DL R+V D K A + FVETS +EL + I+R+
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRR 166
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + R++F+ ++ + + + G+ +I LV NK DL R+VT+ +G + A
Sbjct: 78 IVVYDITNRQSFENTTKWIQDILNER--GKDVIIALVGNKTDLGDLRKVTYEEGXQKAQE 135
Query: 183 WGVKFVETSV 192
+ F ETS
Sbjct: 136 YNTXFHETSA 145
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + ++F +A++ +K L + VI L NKADL +R V + + A
Sbjct: 83 IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E+ + IA++
Sbjct: 141 NSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + ++F +A++ +K L + VI L NKADL +R V + + A
Sbjct: 83 IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E+ + IA++
Sbjct: 141 NSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + ++F +A++ +K L + VI L NKADL +R V + + A
Sbjct: 82 IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 139
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E+ + IA++
Sbjct: 140 NSLLFMETSAKTSMNVNEIFMAIAKK 165
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + ++F +A++ +K L + VI L NKADL +R V + + A
Sbjct: 83 IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E+ + IA++
Sbjct: 141 NSLLFMETSAKTSMNVNEIFMAIAKK 166
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVTHSDGKKLAYA 182
++VY + + +F+K ++ +K L K +G E + +V NK DLE+ R V+ + + A +
Sbjct: 83 ILVYDITDEDSFQKVKNWVKEL--RKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
G K TS +EL + + ++
Sbjct: 141 VGAKHYHTSAKQNKGIEELFLDLCKR 166
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
+IV+ V + +F++A+ ++ L ++ + L NK+DL R+VT D + A
Sbjct: 89 IIVFDVTNQASFERAKKWVQEL-QAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQEN 147
Query: 184 GVKFVETSVGLVYKTDELLVGIARQ 208
G+ F+ETS E+ IAR+
Sbjct: 148 GLFFMETSAKTATNVKEIFYEIARR 172
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAYA 182
++VY V ++++F + L+ + +Y E +LV NK DL ++ V ++ K+ A +
Sbjct: 110 IVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS 167
Query: 183 WGVKFVETSV 192
G+ F+ETS
Sbjct: 168 LGIPFLETSA 177
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAYA 182
++VY V ++++F + L+ + +Y E +LV NK DL ++ V ++ K+ A +
Sbjct: 83 IVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS 140
Query: 183 WGVKFVETSV 192
G+ F+ETS
Sbjct: 141 LGIPFLETSA 150
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVTHSDGKKLAYA 182
++VY + + +F+K ++ +K L K +G E + +V NK DLE+ R V+ + + A +
Sbjct: 83 ILVYDITDEDSFQKVKNWVKEL--RKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
G K TS +EL + + ++
Sbjct: 141 VGAKHYHTSAKQNKGIEELFLDLCKR 166
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAYA 182
++VY V ++++F + L+ + +Y E +LV NK DL ++ V ++ K+ A +
Sbjct: 83 IVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADS 140
Query: 183 WGVKFVETSV 192
G+ F+ETS
Sbjct: 141 LGIPFLETSA 150
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVTHSDGKKLAYA 182
++VY + + +F+K ++ +K L K +G E + +V NK DLE+ R V+ + + A +
Sbjct: 97 ILVYDITDEDSFQKVKNWVKEL--RKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES 154
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
G K TS +EL + + ++
Sbjct: 155 VGAKHYHTSAKQNKGIEELFLDLCKR 180
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAY 181
++VY V ++++F + L+ + +Y E +LV NK DL ++ V ++ K+ A
Sbjct: 101 IIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 158
Query: 182 AWGVKFVETSV 192
+ G+ F+ETS
Sbjct: 159 SLGIPFLETSA 169
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAY 181
++VY V ++++F + L+ + +Y E +LV NK DL ++ V ++ K+ A
Sbjct: 92 IIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 149
Query: 182 AWGVKFVETSV 192
+ G+ F+ETS
Sbjct: 150 SLGIPFLETSA 160
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 36.2 bits (82), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAY 181
++VY V ++++F + L+ + +Y E +LV NK DL ++ V ++ K+ A
Sbjct: 75 IIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 132
Query: 182 AWGVKFVETSV 192
+ G+ F+ETS
Sbjct: 133 SLGIPFLETSA 143
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
++VY + ++ +F+ E LK L D+ ++LV NK+DL+ R + +D + A
Sbjct: 85 LLVYDITKKNSFENIEKWLKELRDNA-DSNIVILLVGNKSDLKHLRVINDNDATQYAKKE 143
Query: 184 GVKFVETSV 192
+ F+ETS
Sbjct: 144 KLAFIETSA 152
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAYA 182
++VY V +++++ + L+ + +Y E +LV NK+DL ++ V ++ K+ A +
Sbjct: 86 IVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADS 143
Query: 183 WGVKFVETSV 192
G+ F+ETS
Sbjct: 144 LGIPFLETSA 153
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAY 181
++VY V +++++ + L+ + +Y E +LV NK+DL ++ V ++ K+ A
Sbjct: 85 IIVVYDVTDQESYANVKQWLQEI--DRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFAD 142
Query: 182 AWGVKFVETSV 192
+ G+ F+ETS
Sbjct: 143 SLGIPFLETSA 153
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + ++F +A++ +K L + VI L NKADL +R V + + A
Sbjct: 84 IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 141
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F ETS +E+ IA++
Sbjct: 142 NSLLFXETSAKTSXNVNEIFXAIAKK 167
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWD--SKYIGEKAVILVANKADLERR---RQVTHSDGKK 178
++VY V + ++F KA +K L + SK I + LV NK D + R+V +G+K
Sbjct: 80 LVVYDVTKPQSFIKARHWVKELHEQASKDI---IIALVGNKIDXLQEGGERKVAREEGEK 136
Query: 179 LAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
LA G+ F ETS +++ +GI +
Sbjct: 137 LAEEKGLLFFETSAKTGENVNDVFLGIGEK 166
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
++V+ + + +T+ E LK L+D V+LV NK+DL + R+V + + A
Sbjct: 87 LLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKSDLSQAREVPTEEARMFAENN 145
Query: 184 GVKFVETSV 192
G+ F+ETS
Sbjct: 146 GLLFLETSA 154
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
++V+ + + +T+ E LK L+D V+LV NK+DL + R+V + + A
Sbjct: 102 LLVFDLTKHQTYAVVERWLKELYDHAE-ATIVVMLVGNKSDLSQAREVPTEEARMFAENN 160
Query: 184 GVKFVETSV 192
G+ F+ETS
Sbjct: 161 GLLFLETSA 169
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 124 VIVYSVIERKTFKKAEDMLKTL---WDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
++VY + + T++ E LK L DS + ++LV NK+DL R V + + A
Sbjct: 106 LLVYDIAKHLTYENVERWLKELRDHADSNIV----IMLVGNKSDLRHLRAVPTDEARAFA 161
Query: 181 YAWGVKFVETSV 192
G+ F+ETS
Sbjct: 162 EKNGLSFIETSA 173
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 124 VIVYSVIERKTFKKAEDMLKTL---WDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
++VY + + T++ E LK L DS + ++LV NK+DL R V + + A
Sbjct: 106 LLVYDIAKHLTYENVERWLKELRDHADSNIV----IMLVGNKSDLRHLRAVPTDEARAFA 161
Query: 181 YAWGVKFVETSV 192
G+ F+ETS
Sbjct: 162 EKNGLSFIETSA 173
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 123 FVIVYSVIERKTFKKA---EDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + +K + DS+ + ++LV NK+DL R V + L
Sbjct: 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDV---PMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
A ++G+ F+ETS D+ + R+
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 123 FVIVYSVIERKTFKKA---EDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + +K + DS+ + ++LV NK+DL R V + L
Sbjct: 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDV---PMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
A ++G+ F+ETS D+ + R+
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 124 VIVYSVIERKTFKKAEDMLKTL---WDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
++VY + + T++ E LK L DS + ++LV NK+DL R V + + A
Sbjct: 97 LLVYDIAKHLTYENVERWLKELRDHADSNIV----IMLVGNKSDLRHLRAVPTDEARAFA 152
Query: 181 YAWGVKFVETSV 192
G+ F+ETS
Sbjct: 153 EKNGLSFIETSA 164
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%)
Query: 124 VIVYSVIERKTFKKAEDMLKTL---WDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
++VY + + T++ E LK L DS + ++LV NK+DL R V + + A
Sbjct: 85 LLVYDIAKHLTYENVERWLKELRDHADSNIV----IMLVGNKSDLRHLRAVPTDEARAFA 140
Query: 181 YAWGVKFVETSV 192
G+ F+ETS
Sbjct: 141 EKNGLSFIETSA 152
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 123 FVIVYSVIERKTFKKA---EDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + +K + DS+ + ++LV NK DL R V + L
Sbjct: 96 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDV---PMVLVGNKCDLPSR-TVDTKQAQDL 151
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
A ++G+ F+ETS D+ + R+
Sbjct: 152 ARSYGIPFIETSAKTRQGVDDAFYTLVRE 180
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 123 FVIVYSVIERKTFKKA---EDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + +K + DS+ + ++LV NK+DL R V + L
Sbjct: 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDV---PMVLVGNKSDLP-SRTVDTKQAQDL 134
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
A ++G+ F+ETS D+ + R+
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 34.3 bits (77), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + + T++ E LK L D + VI LV NK+DL R V + + A
Sbjct: 82 LLVYDIAKHLTYENVERWLKELRD--HADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEK 139
Query: 183 WGVKFVETSV 192
G+ F+ETS
Sbjct: 140 NGLSFIETSA 149
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 123 FVIVYSVIERKTFKKA---EDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + +K + DS+ + ++LV NK DL R V + L
Sbjct: 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDV---PMVLVGNKCDLPSR-TVDTKQAQDL 134
Query: 180 AYAWGVKFVETSVGLVYKTDELLVGIARQ 208
A ++G+ F+ETS D+ + R+
Sbjct: 135 ARSYGIPFIETSAKTRQGVDDAFYTLVRE 163
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 34.3 bits (77), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + + T++ E LK L D + VI LV NK+DL R V + + A
Sbjct: 88 LLVYDIAKHLTYENVERWLKELRD--HADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEK 145
Query: 183 WGVKFVETSV 192
G+ F+ETS
Sbjct: 146 NGLSFIETSA 155
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 34.3 bits (77), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 113 NFVQTYH--PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRR 169
+ Q+Y+ + ++ Y + ++F+ + L+ + +Y K + +LV NK DL RR
Sbjct: 90 SITQSYYRSANALILTYDITCEESFRCLPEWLREI--EQYASNKVITVLVGNKIDLAERR 147
Query: 170 QVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIA 206
+V+ ++ + A + ++ETS ++L + +A
Sbjct: 148 EVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLA 184
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
+IVY V ++++F + L+ + +Y + +LV NK DL+ +R V + K+ A
Sbjct: 84 IIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141
Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
A + F+ETS ++ + +ARQ
Sbjct: 142 ANKMPFLETSALDSTNVEDAFLTMARQ 168
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 33.9 bits (76), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVTHSDGKKLAY 181
++VY + R+T+ + L D++ + + +IL NK DL+ R+VT + + A
Sbjct: 87 LLVYDITSRETYNA---LTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ 143
Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E V AR+
Sbjct: 144 ENELMFLETSALTGENVEEAFVQCARK 170
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVTHSDGKKLAY 181
++VY + R+T+ + L D++ + + +IL NK DL+ R+VT + + A
Sbjct: 88 LLVYDITSRETYNALTNWLT---DARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ 144
Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E V AR+
Sbjct: 145 ENELMFLETSALTGEDVEEAFVQCARK 171
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTHSDGKKL 179
F++VYSV R++F + L+ L ++++ +L+ NK D+ + RQVT ++G L
Sbjct: 94 AFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVAL 153
Query: 180 AYAWGVKFVETSVGLVYK 197
A +G F E S L ++
Sbjct: 154 AGRFGCLFFEVSACLDFE 171
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
+IVY V ++++F + L+ + +Y + +LV NK DL+ +R V + K+ A
Sbjct: 84 IIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141
Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
A + F+ETS ++ + +ARQ
Sbjct: 142 ANKMPFLETSALDSTNVEDAFLTMARQ 168
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVTHSDGKKLAY 181
++VY + R+T+ + L D++ + + +IL NK DL+ R+VT + + A
Sbjct: 85 LLVYDITSRETYNALTNWLT---DARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ 141
Query: 182 AWGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS +E V AR+
Sbjct: 142 ENELMFLETSALTGEDVEEAFVQCARK 168
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAYA 182
++VY V ++++F + L+ + +Y E +LV K DL ++ V ++ K+ A +
Sbjct: 85 IVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGIKCDLTTKKVVDYTTAKEFADS 142
Query: 183 WGVKFVETSV 192
G+ F+ETS
Sbjct: 143 LGIPFLETSA 152
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK+DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKSDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYA 182
+IVY V ++++F + L+ + +Y + +LV NK DL+ +R V + K+ A A
Sbjct: 98 IIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA 155
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQ 208
+ F+ETS ++ + +ARQ
Sbjct: 156 NKMPFLETSALDSTNVEDAFLTMARQ 181
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
++VY + + T++ E LK L D ++LV NK+DL R V + + A
Sbjct: 82 LLVYDIAKHLTYENVERWLKELRDHAD-SNIVIMLVGNKSDLRHLRAVPTDEARAFAEKN 140
Query: 184 GVKFVETSV 192
+ F+ETS
Sbjct: 141 NLSFIETSA 149
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK+DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKSDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 83 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 139 ARSYGIPYIETSA 151
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 83 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 139 ARSYGIPYIETSA 151
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 84 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 139
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 140 ARSYGIPYIETSA 152
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 32.3 bits (72), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 83 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 138
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 139 ARSYGIPYIETSA 151
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-GRTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 32.0 bits (71), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 85 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 140
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 141 ARSYGIPYIETSA 153
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKXDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 32.0 bits (71), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEK--AVILVANKADLERRRQVTHSDGKKLAY 181
++VY + R+T+ + L D++ + VIL NK DL+ R+VT + + A
Sbjct: 102 LLVYDITSRETYNS---LAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ 158
Query: 182 AWGVKFVETSVGLVYKTDELLVGIAR 207
+ F+ETS +E + AR
Sbjct: 159 ENELMFLETSALTGENVEEAFLKCAR 184
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV NK DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNKCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFKKA---EDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F + +K + DS + ++LV NK DL R V +L
Sbjct: 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDV---PMVLVGNKCDLPTR-TVDTKQAHEL 151
Query: 180 AYAWGVKFVETSV 192
A ++G+ F+ETS
Sbjct: 152 AKSYGIPFIETSA 164
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 31.2 bits (69), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 7/73 (9%)
Query: 123 FVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179
F+ V+++ K+F+ + + +K + DS + ++LV N+ DL R V + L
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDV---PMVLVGNRCDLA-ARTVESRQAQDL 133
Query: 180 AYAWGVKFVETSV 192
A ++G+ ++ETS
Sbjct: 134 ARSYGIPYIETSA 146
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/144 (19%), Positives = 56/144 (38%), Gaps = 13/144 (9%)
Query: 32 CLTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIV 91
+ +IP V++ + Y + D QRC M ++ N + H + + +
Sbjct: 6 SMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINI 65
Query: 92 YSDTNHTQRCLTPMPFCSQVE------NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTL 145
+ +H++ L P+P N+V Y+ I + TF ED + +
Sbjct: 66 LA-YDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTF---EDFWRMI 121
Query: 146 WDSKYIGEKAVILVANKADLERRR 169
W+ +I++ N + RR+
Sbjct: 122 WEQN---TGIIIMITNLVEKGRRK 142
>pdb|3EYX|A Chain A, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
pdb|3EYX|B Chain B, Crystal Structure Of Carbonic Anhydrase Nce103 From
Saccharomyces Cerevisiae
Length = 216
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 57/144 (39%), Gaps = 21/144 (14%)
Query: 3 FCSQVENIVHTYHPD---------VFFIVYSDTNHTQRCLTSIPFCSTVENFVQTYHHVF 53
+ SQ+ NI T PD FI SD+ + + CL +P V T+ +V
Sbjct: 23 WASQMNNIQPTLFPDHNAKGQSPHTLFIGCSDSRYNENCLGVLP------GEVFTWKNVA 76
Query: 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVEN 113
I HS+ + L C +V + H D I TN QR P CS +
Sbjct: 77 NICHSEDLTLKATLEFAIICLKVNKVIICGHTDCGGIKTCLTN--QREALPKVNCSHLYK 134
Query: 114 FVQ----TYHPDVFVIVYSVIERK 133
++ YH + +++ +R+
Sbjct: 135 YLDDIDTMYHEESQNLIHLKTQRE 158
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain
1, In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic Acid
Length = 310
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 13/144 (9%)
Query: 32 CLTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIV 91
+ +IP V++ + Y + D QRC M ++ N + H + + +
Sbjct: 6 SMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINI 65
Query: 92 YSDTNHTQRCLTPMPFCSQVE------NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTL 145
+ +H++ L P+P N+V Y+ I + TF ED + +
Sbjct: 66 LA-YDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTF---EDFWRMI 121
Query: 146 WDSKYIGEKAVILVANKADLERRR 169
W+ ++++ N + RR+
Sbjct: 122 WEQN---TGIIVMITNLVEKGRRK 142
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/143 (18%), Positives = 56/143 (39%), Gaps = 13/143 (9%)
Query: 33 LTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVY 92
+ +IP V++ + Y + D QRC M ++ N + H + + +
Sbjct: 8 MEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINIL 67
Query: 93 SDTNHTQRCLTPMPFCSQV------ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLW 146
+ +H++ L P+P N+V Y+ I + TF ED + +W
Sbjct: 68 A-YDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTF---EDFWRMIW 123
Query: 147 DSKYIGEKAVILVANKADLERRR 169
+ ++++ N + RR+
Sbjct: 124 EQN---TGIIVMITNLVEKGRRK 143
>pdb|2GGF|A Chain A, Solution Structure Of The Ma3 Domain Of Human Programmed
Cell Death 4
Length = 137
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS 148
+++ D + + CL + +V +F + ++V TFK D+LK+LW S
Sbjct: 19 YLLSGDISEAEHCLKEL----EVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKS 74
Query: 149 KYI 151
I
Sbjct: 75 STI 77
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLA 180
++ Y + +R +F ++ + KY G V +L+ NK+DL R+V+ ++ + LA
Sbjct: 106 ILAYDITKRSSFLSVPHWIEDV--RKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLA 161
>pdb|2ZU6|B Chain B, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|E Chain E, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 307
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTL 145
+++ D + + CL + +V +F +H V+ + V+E TFK D+LK+L
Sbjct: 176 YLLSGDISEAEHCLKEL----EVPHF---HHELVYEAIIXVLESTGESTFKXILDLLKSL 228
Query: 146 WDSKYI 151
W S I
Sbjct: 229 WKSSTI 234
>pdb|3EIJ|A Chain A, Crystal Structure Of Pdcd4
pdb|3EIJ|B Chain B, Crystal Structure Of Pdcd4
Length = 321
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS 148
+++ D + + CL + +V +F + ++V TFK D+LK+LW S
Sbjct: 190 YLLSGDISEAEHCLKEL----EVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKS 245
Query: 149 KYI 151
I
Sbjct: 246 STI 248
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 7/95 (7%)
Query: 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL------ERRRQVTH 173
D +++Y V K+F + + + D+ + ++LV NKAD+ E ++ V
Sbjct: 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHE-TVPIMLVGNKADIRDTAATEGQKCVPG 159
Query: 174 SDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
G+KLA +G F ETS E ++ +AR+
Sbjct: 160 HFGEKLAMTYGALFCETSAKDGSNIVEAVLHLARE 194
>pdb|3SZP|A Chain A, Full-Length Structure Of The Vibrio Cholerae Virulence
Activator, Aphb, A Member Of The Lttr Protein Family
pdb|3SZP|B Chain B, Full-Length Structure Of The Vibrio Cholerae Virulence
Activator, Aphb, A Member Of The Lttr Protein Family
Length = 291
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 26/99 (26%)
Query: 91 VYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWD--- 147
+ + +N T+R + PM F++ Y PD+ IE +A+D+ T WD
Sbjct: 95 ISAPSNLTKRMMMPM-----FNAFMEKY-PDIH------IELMMSNQADDLDPTEWDVIF 142
Query: 148 -----------SKYIGEKAVILVANKADLERRRQVTHSD 175
++ IGE ILVA+ L Q TH++
Sbjct: 143 RVGPQRDSSLIARKIGEVKDILVASPQYLSSHPQPTHAE 181
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 28.5 bits (62), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 157 ILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192
ILV NK D R+ V D K A G++ ETS
Sbjct: 117 ILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSA 152
>pdb|2HM8|A Chain A, Solution Structure Of The C-Terminal Ma-3 Domain Of Pdcd4
Length = 136
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS 148
+++ D + + CL + +V +F + V+V FK D+LK+LW S
Sbjct: 25 YLLSGDISEAEHCLKEL----EVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 80
Query: 149 KYI 151
I
Sbjct: 81 STI 83
>pdb|2KZT|B Chain B, Structure Of The Tandem Ma-3 Region Of Pdcd4
Length = 131
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS 148
+++ D + + CL + +V +F + V+V FK D+LK+LW S
Sbjct: 20 YLLSGDISEAEHCLKEL----EVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 75
Query: 149 KYI 151
I
Sbjct: 76 STI 78
>pdb|2ION|A Chain A, Crystal Structure Of The C-terminal Ma3 Domain Of Pdcd4
(mouse); Form2
Length = 152
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS 148
+++ D + + CL + +V +F + V+V FK D+LK+LW S
Sbjct: 19 YLLSGDISEAEHCLKEL----EVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 74
Query: 149 KYI 151
I
Sbjct: 75 STI 77
>pdb|2NSZ|A Chain A, 1.15 Angstrom Crystal Structure Of The Ma3 Domain Of Pdcd4
Length = 129
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS 148
+++ D + + CL + +V +F + V+V FK D+LK+LW S
Sbjct: 17 YLLSGDISEAEHCLKEL----EVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKS 72
Query: 149 KYI 151
I
Sbjct: 73 STI 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.136 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,794,593
Number of Sequences: 62578
Number of extensions: 241850
Number of successful extensions: 972
Number of sequences better than 100.0: 184
Number of HSP's better than 100.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 803
Number of HSP's gapped (non-prelim): 187
length of query: 250
length of database: 14,973,337
effective HSP length: 96
effective length of query: 154
effective length of database: 8,965,849
effective search space: 1380740746
effective search space used: 1380740746
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)