Query psy5810
Match_columns 250
No_of_seqs 182 out of 1903
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 18:35:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084|consensus 100.0 4.4E-40 9.6E-45 258.2 14.4 158 48-219 5-181 (205)
2 KOG0092|consensus 100.0 1.8E-38 3.9E-43 248.3 14.4 155 50-218 4-175 (200)
3 KOG0094|consensus 100.0 5.6E-38 1.2E-42 245.7 13.9 163 39-214 10-189 (221)
4 KOG0078|consensus 100.0 5.1E-37 1.1E-41 244.2 14.6 155 50-218 11-182 (207)
5 KOG0098|consensus 100.0 9.1E-37 2E-41 237.1 13.0 155 50-218 5-176 (216)
6 KOG0080|consensus 100.0 1.1E-35 2.4E-40 225.6 12.1 153 50-215 10-179 (209)
7 KOG0394|consensus 100.0 2E-34 4.3E-39 223.7 14.4 155 48-215 6-183 (210)
8 KOG0079|consensus 100.0 3.5E-35 7.6E-40 220.1 9.2 150 52-216 9-175 (198)
9 cd04121 Rab40 Rab40 subfamily. 100.0 5.6E-34 1.2E-38 231.0 14.9 151 50-215 5-172 (189)
10 KOG0091|consensus 100.0 7.6E-34 1.6E-38 216.3 12.8 152 51-215 8-178 (213)
11 KOG0087|consensus 100.0 2.5E-33 5.5E-38 222.3 15.4 158 47-218 9-184 (222)
12 KOG0093|consensus 100.0 1.4E-33 3E-38 211.3 13.1 152 52-215 22-188 (193)
13 cd04133 Rop_like Rop subfamily 100.0 5.7E-33 1.2E-37 222.7 16.8 145 52-211 2-174 (176)
14 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 6.9E-33 1.5E-37 223.4 16.7 146 50-210 4-180 (182)
15 cd04148 RGK RGK subfamily. Th 100.0 9.9E-33 2.1E-37 229.1 16.7 187 52-250 1-221 (221)
16 cd04120 Rab12 Rab12 subfamily. 100.0 1.1E-32 2.3E-37 225.6 16.0 146 53-212 2-165 (202)
17 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 9.4E-33 2E-37 229.9 15.9 152 49-215 11-193 (232)
18 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 1.6E-32 3.4E-37 219.4 16.2 149 51-212 2-166 (172)
19 KOG0088|consensus 100.0 2.5E-33 5.3E-38 212.5 10.9 154 48-215 10-180 (218)
20 cd04131 Rnd Rnd subfamily. Th 100.0 2.3E-32 4.9E-37 219.7 16.6 144 52-210 2-176 (178)
21 KOG0081|consensus 100.0 9E-34 2E-38 215.0 7.4 157 48-215 5-186 (219)
22 cd01875 RhoG RhoG subfamily. 100.0 5.4E-32 1.2E-36 219.8 16.6 146 51-211 3-178 (191)
23 KOG0086|consensus 100.0 1.2E-32 2.6E-37 207.6 10.7 160 46-219 3-180 (214)
24 cd01873 RhoBTB RhoBTB subfamil 100.0 1.1E-31 2.4E-36 218.6 17.1 146 51-208 2-194 (195)
25 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.2E-31 2.5E-36 219.5 16.5 155 52-219 1-177 (201)
26 cd04144 Ras2 Ras2 subfamily. 100.0 8.4E-32 1.8E-36 218.5 14.6 151 53-216 1-169 (190)
27 cd04126 Rab20 Rab20 subfamily. 100.0 2.4E-31 5.3E-36 220.1 17.4 152 52-217 1-197 (220)
28 cd04122 Rab14 Rab14 subfamily. 100.0 2.7E-31 5.8E-36 210.6 16.3 147 51-211 2-165 (166)
29 PTZ00369 Ras-like protein; Pro 100.0 3.2E-31 6.9E-36 214.9 16.9 153 51-216 5-173 (189)
30 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.4E-31 3.1E-36 221.7 15.1 149 52-215 2-181 (222)
31 cd01874 Cdc42 Cdc42 subfamily. 100.0 4.9E-31 1.1E-35 211.4 16.8 143 52-209 2-174 (175)
32 cd04127 Rab27A Rab27a subfamil 100.0 5.2E-31 1.1E-35 211.4 16.3 149 50-211 3-178 (180)
33 cd04110 Rab35 Rab35 subfamily. 100.0 4.8E-31 1E-35 215.6 16.3 155 50-217 5-174 (199)
34 cd04111 Rab39 Rab39 subfamily. 100.0 5.7E-31 1.2E-35 217.1 16.0 153 51-216 2-172 (211)
35 cd04136 Rap_like Rap-like subf 100.0 5.7E-31 1.2E-35 207.4 15.2 145 52-209 2-162 (163)
36 cd04175 Rap1 Rap1 subgroup. T 100.0 5.9E-31 1.3E-35 208.0 14.9 146 52-210 2-163 (164)
37 cd04109 Rab28 Rab28 subfamily. 100.0 1.2E-30 2.6E-35 215.7 16.4 148 52-212 1-168 (215)
38 cd04117 Rab15 Rab15 subfamily. 100.0 1.1E-30 2.4E-35 206.4 15.4 143 52-208 1-160 (161)
39 KOG0083|consensus 100.0 4.6E-32 1E-36 200.2 6.9 149 55-215 1-165 (192)
40 KOG0095|consensus 100.0 2.2E-31 4.7E-36 200.1 9.8 156 48-217 3-176 (213)
41 cd04103 Centaurin_gamma Centau 100.0 1.4E-30 3E-35 205.4 14.8 141 52-208 1-157 (158)
42 cd01865 Rab3 Rab3 subfamily. 100.0 4E-30 8.7E-35 203.7 16.7 146 52-211 2-164 (165)
43 cd04125 RabA_like RabA-like su 100.0 4.1E-30 8.8E-35 208.0 16.7 151 52-216 1-168 (188)
44 cd04176 Rap2 Rap2 subgroup. T 100.0 2.8E-30 6.1E-35 203.8 15.3 145 52-209 2-162 (163)
45 cd01871 Rac1_like Rac1-like su 100.0 4.1E-30 8.8E-35 205.8 16.1 142 52-208 2-173 (174)
46 PLN03110 Rab GTPase; Provision 100.0 3.6E-30 7.9E-35 213.0 16.2 151 50-214 11-178 (216)
47 cd04134 Rho3 Rho3 subfamily. 100.0 5.2E-30 1.1E-34 207.8 16.6 146 53-213 2-177 (189)
48 cd01867 Rab8_Rab10_Rab13_like 100.0 4.6E-30 9.9E-35 203.8 15.9 147 51-211 3-166 (167)
49 PF00071 Ras: Ras family; Int 100.0 2.1E-30 4.6E-35 204.2 13.7 144 53-210 1-161 (162)
50 cd04119 RJL RJL (RabJ-Like) su 100.0 4.8E-30 1E-34 202.6 15.2 146 52-210 1-167 (168)
51 cd04132 Rho4_like Rho4-like su 100.0 8.7E-30 1.9E-34 205.7 16.6 148 52-214 1-171 (187)
52 cd04128 Spg1 Spg1p. Spg1p (se 100.0 6.7E-30 1.5E-34 206.0 15.6 146 52-212 1-168 (182)
53 cd04112 Rab26 Rab26 subfamily. 100.0 7E-30 1.5E-34 207.3 15.5 152 52-215 1-168 (191)
54 cd04140 ARHI_like ARHI subfami 100.0 1.3E-29 2.7E-34 200.9 15.5 143 52-207 2-162 (165)
55 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.6E-29 3.5E-34 201.6 16.2 146 53-211 2-166 (170)
56 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 1.5E-29 3.3E-34 200.3 15.9 146 51-210 2-164 (166)
57 cd04138 H_N_K_Ras_like H-Ras/N 100.0 1.3E-29 2.8E-34 198.9 15.3 144 52-209 2-161 (162)
58 PLN03071 GTP-binding nuclear p 100.0 1.7E-29 3.7E-34 209.4 16.6 147 49-212 11-174 (219)
59 smart00173 RAS Ras subfamily o 100.0 1.2E-29 2.6E-34 200.3 14.8 145 53-210 2-162 (164)
60 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2E-29 4.2E-34 198.8 15.2 146 51-209 2-163 (164)
61 cd00877 Ran Ran (Ras-related n 100.0 4.3E-29 9.3E-34 198.3 16.0 143 52-211 1-160 (166)
62 cd04115 Rab33B_Rab33A Rab33B/R 100.0 4.4E-29 9.6E-34 198.7 16.0 146 51-209 2-168 (170)
63 smart00174 RHO Rho (Ras homolo 100.0 5E-29 1.1E-33 198.7 15.8 143 54-211 1-173 (174)
64 cd04106 Rab23_lke Rab23-like s 100.0 5.9E-29 1.3E-33 195.8 15.1 142 52-208 1-161 (162)
65 cd04146 RERG_RasL11_like RERG/ 100.0 3.8E-29 8.3E-34 197.9 14.1 145 53-210 1-164 (165)
66 cd04116 Rab9 Rab9 subfamily. 100.0 9.4E-29 2E-33 196.5 16.0 145 50-208 4-169 (170)
67 cd04142 RRP22 RRP22 subfamily. 100.0 1.5E-28 3.2E-33 200.8 17.0 159 52-215 1-179 (198)
68 cd01868 Rab11_like Rab11-like. 100.0 1.3E-28 2.8E-33 194.6 15.8 145 51-209 3-164 (165)
69 cd01866 Rab2 Rab2 subfamily. 100.0 1.8E-28 3.8E-33 194.9 16.2 146 52-211 5-167 (168)
70 cd04118 Rab24 Rab24 subfamily. 100.0 1.8E-28 3.9E-33 199.0 16.5 147 52-213 1-169 (193)
71 cd04177 RSR1 RSR1 subgroup. R 100.0 1.9E-28 4.2E-33 194.6 16.2 146 52-210 2-164 (168)
72 cd04101 RabL4 RabL4 (Rab-like4 100.0 1.5E-28 3.2E-33 194.0 15.1 145 52-209 1-163 (164)
73 cd01864 Rab19 Rab19 subfamily. 100.0 1.8E-28 3.9E-33 194.0 15.3 144 51-208 3-164 (165)
74 PLN03108 Rab family protein; P 100.0 2.6E-28 5.7E-33 201.1 16.6 150 51-214 6-172 (210)
75 cd04113 Rab4 Rab4 subfamily. 100.0 1.7E-28 3.7E-33 193.2 14.8 143 52-208 1-160 (161)
76 cd04124 RabL2 RabL2 subfamily. 100.0 2.7E-28 5.8E-33 192.6 15.9 143 52-212 1-160 (161)
77 smart00176 RAN Ran (Ras-relate 100.0 1.7E-28 3.7E-33 200.4 15.0 139 57-212 1-156 (200)
78 KOG0097|consensus 100.0 6E-29 1.3E-33 185.5 11.1 154 51-218 11-181 (215)
79 KOG0395|consensus 100.0 4.5E-28 9.7E-33 196.9 15.7 151 52-215 4-170 (196)
80 cd04130 Wrch_1 Wrch-1 subfamil 100.0 9.3E-28 2E-32 191.6 16.8 141 52-207 1-171 (173)
81 cd04143 Rhes_like Rhes_like su 100.0 4.9E-28 1.1E-32 203.9 15.3 150 52-214 1-175 (247)
82 smart00175 RAB Rab subfamily o 100.0 8.7E-28 1.9E-32 189.2 15.5 146 52-211 1-163 (164)
83 cd01892 Miro2 Miro2 subfamily. 100.0 5.3E-28 1.2E-32 192.6 14.3 146 50-211 3-167 (169)
84 cd04135 Tc10 TC10 subfamily. 100.0 1.5E-27 3.3E-32 190.1 16.8 143 52-209 1-173 (174)
85 PLN03118 Rab family protein; P 100.0 2.6E-27 5.6E-32 195.2 17.2 153 50-213 13-180 (211)
86 cd01860 Rab5_related Rab5-rela 100.0 1.8E-27 3.9E-32 187.5 15.5 144 52-209 2-162 (163)
87 cd01861 Rab6 Rab6 subfamily. 100.0 2.7E-27 5.9E-32 186.1 15.3 142 53-208 2-160 (161)
88 cd04147 Ras_dva Ras-dva subfam 100.0 5.8E-27 1.2E-31 191.3 16.7 154 53-219 1-172 (198)
89 cd04123 Rab21 Rab21 subfamily. 99.9 5.2E-27 1.1E-31 184.1 15.5 144 52-209 1-161 (162)
90 cd04149 Arf6 Arf6 subfamily. 99.9 1.5E-27 3.3E-32 189.8 12.5 144 51-207 9-167 (168)
91 cd04139 RalA_RalB RalA/RalB su 99.9 5.8E-27 1.3E-31 184.3 15.4 146 52-210 1-162 (164)
92 cd01863 Rab18 Rab18 subfamily. 99.9 7.8E-27 1.7E-31 183.6 15.8 145 52-208 1-160 (161)
93 cd04129 Rho2 Rho2 subfamily. 99.9 9E-27 2E-31 188.4 16.3 149 52-215 2-178 (187)
94 cd04158 ARD1 ARD1 subfamily. 99.9 3.4E-27 7.3E-32 187.8 13.1 147 53-212 1-163 (169)
95 cd01870 RhoA_like RhoA-like su 99.9 2.1E-26 4.5E-31 183.7 17.0 143 52-209 2-174 (175)
96 cd01862 Rab7 Rab7 subfamily. 99.9 1.6E-26 3.4E-31 183.5 15.6 148 52-212 1-169 (172)
97 PLN00223 ADP-ribosylation fact 99.9 7.3E-27 1.6E-31 188.2 13.4 149 51-212 17-180 (181)
98 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.9 1.2E-26 2.7E-31 187.0 14.6 155 50-219 2-179 (183)
99 KOG0393|consensus 99.9 9.7E-27 2.1E-31 186.0 13.7 150 50-214 3-183 (198)
100 cd04150 Arf1_5_like Arf1-Arf5- 99.9 2E-27 4.3E-32 187.5 9.2 143 52-207 1-158 (159)
101 smart00177 ARF ARF-like small 99.9 3.2E-27 6.9E-32 189.2 10.3 146 51-209 13-173 (175)
102 cd04162 Arl9_Arfrp2_like Arl9/ 99.9 2.5E-27 5.5E-32 187.8 9.3 139 54-207 2-163 (164)
103 cd04137 RheB Rheb (Ras Homolog 99.9 6.1E-26 1.3E-30 182.0 15.2 149 52-213 2-166 (180)
104 PTZ00133 ADP-ribosylation fact 99.9 3.9E-26 8.4E-31 184.1 13.7 149 51-212 17-180 (182)
105 cd04114 Rab30 Rab30 subfamily. 99.9 1.4E-25 3E-30 177.8 16.6 145 51-209 7-168 (169)
106 cd00876 Ras Ras family. The R 99.9 6.6E-26 1.4E-30 177.4 13.2 143 53-208 1-159 (160)
107 cd04154 Arl2 Arl2 subfamily. 99.9 6.6E-26 1.4E-30 180.9 13.3 146 49-207 12-172 (173)
108 cd04102 RabL3 RabL3 (Rab-like3 99.9 1.1E-25 2.3E-30 184.1 14.2 133 52-197 1-177 (202)
109 cd00157 Rho Rho (Ras homology) 99.9 2.6E-25 5.6E-30 176.4 15.9 141 52-207 1-170 (171)
110 cd01893 Miro1 Miro1 subfamily. 99.9 1.9E-25 4.2E-30 177.1 14.3 145 52-211 1-165 (166)
111 KOG4252|consensus 99.9 1.8E-26 3.8E-31 178.6 5.6 152 50-216 19-187 (246)
112 cd00154 Rab Rab family. Rab G 99.9 5.5E-25 1.2E-29 171.2 13.9 141 52-206 1-158 (159)
113 cd04161 Arl2l1_Arl13_like Arl2 99.9 1.4E-25 2.9E-30 178.4 9.2 144 53-207 1-166 (167)
114 PTZ00132 GTP-binding nuclear p 99.9 2E-24 4.4E-29 178.4 16.5 150 48-214 6-172 (215)
115 cd04157 Arl6 Arl6 subfamily. 99.9 1.9E-25 4.1E-30 175.6 9.8 142 53-207 1-161 (162)
116 cd00879 Sar1 Sar1 subfamily. 99.9 6.3E-25 1.4E-29 177.7 12.8 146 50-208 18-189 (190)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.9 7.2E-25 1.6E-29 175.3 13.0 144 51-207 15-173 (174)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.9 6.3E-25 1.4E-29 172.5 10.8 142 53-207 1-159 (160)
119 cd04151 Arl1 Arl1 subfamily. 99.9 1E-24 2.2E-29 171.4 10.1 142 53-207 1-157 (158)
120 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.1E-24 4.5E-29 170.8 11.8 142 53-207 1-166 (167)
121 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.9E-24 4E-29 169.6 11.0 142 53-207 1-157 (158)
122 smart00178 SAR Sar1p-like memb 99.9 5.4E-24 1.2E-28 171.8 12.7 146 50-208 16-183 (184)
123 PTZ00099 rab6; Provisional 99.9 3.5E-23 7.5E-28 166.0 14.6 114 89-213 30-145 (176)
124 PF00025 Arf: ADP-ribosylation 99.9 3.1E-23 6.8E-28 166.1 14.4 149 48-209 11-175 (175)
125 TIGR02528 EutP ethanolamine ut 99.9 5E-24 1.1E-28 164.4 9.0 139 53-206 2-141 (142)
126 PLN00023 GTP-binding protein; 99.9 2.5E-23 5.4E-28 178.8 13.7 127 48-185 18-189 (334)
127 KOG3883|consensus 99.9 3.7E-23 8E-28 156.3 12.7 159 50-219 8-184 (198)
128 cd01897 NOG NOG1 is a nucleola 99.9 8.3E-23 1.8E-27 161.7 12.9 150 53-209 2-167 (168)
129 cd04159 Arl10_like Arl10-like 99.9 4.4E-23 9.5E-28 160.6 10.3 139 54-207 2-158 (159)
130 KOG0073|consensus 99.9 3.7E-22 7.9E-27 152.6 14.5 151 48-211 13-179 (185)
131 cd01898 Obg Obg subfamily. Th 99.9 2E-22 4.4E-27 159.7 11.8 146 54-208 3-169 (170)
132 KOG0070|consensus 99.9 6.8E-22 1.5E-26 154.6 12.8 150 49-211 15-179 (181)
133 cd04155 Arl3 Arl3 subfamily. 99.9 7.4E-22 1.6E-26 157.1 13.0 143 49-207 12-172 (173)
134 PRK12299 obgE GTPase CgtA; Rev 99.9 1.3E-21 2.8E-26 171.2 13.1 150 54-211 161-329 (335)
135 cd01878 HflX HflX subfamily. 99.9 6.7E-22 1.5E-26 161.9 10.6 151 51-208 41-203 (204)
136 PRK15494 era GTPase Era; Provi 99.9 7.5E-22 1.6E-26 173.5 11.2 179 49-237 50-243 (339)
137 COG1100 GTPase SAR1 and relate 99.9 3.7E-21 8E-26 158.9 14.6 152 52-217 6-192 (219)
138 cd01890 LepA LepA subfamily. 99.9 3.4E-21 7.5E-26 154.0 11.1 139 53-209 2-176 (179)
139 PRK15467 ethanolamine utilizat 99.9 2.7E-21 5.8E-26 152.4 9.5 145 53-212 3-149 (158)
140 TIGR00436 era GTP-binding prot 99.9 3.1E-21 6.6E-26 164.9 10.6 176 53-237 2-191 (270)
141 PRK04213 GTP-binding protein; 99.8 3.7E-21 7.9E-26 157.1 7.2 147 50-211 8-193 (201)
142 cd04171 SelB SelB subfamily. 99.8 3.5E-20 7.5E-25 145.6 12.0 137 53-207 2-163 (164)
143 TIGR03156 GTP_HflX GTP-binding 99.8 1.9E-20 4E-25 165.1 11.1 147 51-208 189-350 (351)
144 KOG0071|consensus 99.8 4.2E-20 9.1E-25 137.8 10.7 147 51-210 17-178 (180)
145 cd01879 FeoB Ferrous iron tran 99.8 9.8E-20 2.1E-24 142.3 12.7 145 56-209 1-156 (158)
146 TIGR02729 Obg_CgtA Obg family 99.8 7.2E-20 1.6E-24 160.0 12.4 147 54-209 160-328 (329)
147 TIGR00231 small_GTP small GTP- 99.8 1.3E-19 2.9E-24 140.2 12.1 139 52-205 2-159 (161)
148 PF02421 FeoB_N: Ferrous iron 99.8 4.4E-20 9.5E-25 144.0 9.2 145 52-205 1-156 (156)
149 cd01881 Obg_like The Obg-like 99.8 7.2E-20 1.6E-24 145.6 10.6 150 56-208 1-175 (176)
150 KOG4423|consensus 99.8 2.4E-21 5.1E-26 151.1 1.5 154 48-214 22-198 (229)
151 PRK03003 GTP-binding protein D 99.8 1.9E-19 4.1E-24 165.1 13.0 160 50-216 210-388 (472)
152 TIGR00450 mnmE_trmE_thdF tRNA 99.8 2.6E-19 5.5E-24 162.2 13.3 139 50-212 202-362 (442)
153 KOG0096|consensus 99.8 1.2E-19 2.7E-24 141.9 8.8 147 49-212 8-171 (216)
154 PRK11058 GTPase HflX; Provisio 99.8 3.2E-19 7E-24 160.8 12.6 150 52-211 198-363 (426)
155 cd04164 trmE TrmE (MnmE, ThdF, 99.8 4.2E-19 9.2E-24 138.2 11.1 143 52-209 2-156 (157)
156 cd00882 Ras_like_GTPase Ras-li 99.8 7.7E-19 1.7E-23 134.4 11.7 139 56-206 1-156 (157)
157 PRK00089 era GTPase Era; Revie 99.8 3E-19 6.6E-24 154.2 10.2 182 49-236 3-197 (292)
158 PRK12297 obgE GTPase CgtA; Rev 99.8 1.1E-18 2.5E-23 156.5 14.1 148 54-213 161-330 (424)
159 KOG0075|consensus 99.8 1.5E-19 3.2E-24 135.9 6.7 144 51-209 20-181 (186)
160 PF08477 Miro: Miro-like prote 99.8 3E-19 6.6E-24 133.5 8.1 99 53-164 1-119 (119)
161 cd01891 TypA_BipA TypA (tyrosi 99.8 4.8E-19 1E-23 144.0 9.8 133 53-201 4-173 (194)
162 PRK05291 trmE tRNA modificatio 99.8 7.7E-19 1.7E-23 159.7 11.4 145 51-211 215-371 (449)
163 PRK03003 GTP-binding protein D 99.8 8.3E-19 1.8E-23 160.8 11.5 175 52-238 39-236 (472)
164 PRK12298 obgE GTPase CgtA; Rev 99.8 3E-18 6.5E-23 152.9 14.0 180 54-238 162-361 (390)
165 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3E-18 6.5E-23 135.3 12.4 136 53-209 2-165 (168)
166 cd01894 EngA1 EngA1 subfamily. 99.8 1.6E-18 3.5E-23 135.0 10.2 142 55-208 1-156 (157)
167 KOG0076|consensus 99.8 3.1E-19 6.7E-24 137.8 5.0 152 46-212 15-189 (197)
168 COG1159 Era GTPase [General fu 99.8 3.8E-18 8.3E-23 143.4 11.5 185 48-238 3-200 (298)
169 PRK12296 obgE GTPase CgtA; Rev 99.8 7.5E-18 1.6E-22 153.2 13.6 151 54-213 162-343 (500)
170 KOG1673|consensus 99.8 8.7E-18 1.9E-22 127.6 11.5 154 46-212 15-188 (205)
171 TIGR03594 GTPase_EngA ribosome 99.8 2.2E-17 4.7E-22 149.9 16.5 157 50-214 171-348 (429)
172 cd01895 EngA2 EngA2 subfamily. 99.8 1.3E-17 2.8E-22 131.6 12.7 150 51-207 2-172 (174)
173 cd00881 GTP_translation_factor 99.7 1.3E-17 2.7E-22 134.0 10.2 139 54-210 2-187 (189)
174 TIGR00437 feoB ferrous iron tr 99.7 1.8E-17 3.9E-22 155.2 12.5 143 58-209 1-154 (591)
175 cd04163 Era Era subfamily. Er 99.7 2.3E-17 5E-22 129.0 11.0 149 51-208 3-167 (168)
176 PRK00454 engB GTP-binding prot 99.7 3.3E-17 7.3E-22 132.9 10.4 157 48-210 21-194 (196)
177 PRK09518 bifunctional cytidyla 99.7 9.2E-17 2E-21 153.9 14.7 156 50-214 449-625 (712)
178 KOG0072|consensus 99.7 3.1E-17 6.8E-22 123.1 8.5 149 50-211 17-180 (182)
179 cd01889 SelB_euk SelB subfamil 99.7 3.9E-17 8.6E-22 132.5 9.9 146 52-211 1-187 (192)
180 cd04105 SR_beta Signal recogni 99.7 1.1E-16 2.4E-21 131.1 12.3 102 53-167 2-123 (203)
181 PRK09554 feoB ferrous iron tra 99.7 1.9E-16 4.1E-21 151.8 14.6 150 51-209 3-167 (772)
182 PRK00093 GTP-binding protein D 99.7 9.2E-17 2E-21 146.1 11.9 173 52-238 2-198 (435)
183 KOG0074|consensus 99.7 6.3E-17 1.4E-21 121.1 7.6 149 48-208 14-177 (185)
184 TIGR03594 GTPase_EngA ribosome 99.7 1.3E-16 2.9E-21 144.8 11.4 171 53-237 1-196 (429)
185 TIGR01393 lepA GTP-binding pro 99.7 1.5E-16 3.3E-21 148.9 12.1 142 53-212 5-182 (595)
186 cd00880 Era_like Era (E. coli 99.7 3E-16 6.4E-21 121.4 11.0 145 56-208 1-162 (163)
187 cd01896 DRG The developmentall 99.7 6.3E-16 1.4E-20 129.3 13.6 146 53-209 2-225 (233)
188 PRK00093 GTP-binding protein D 99.7 2.4E-16 5.3E-21 143.3 11.9 155 50-213 172-347 (435)
189 TIGR03598 GTPase_YsxC ribosome 99.7 1.7E-16 3.6E-21 127.4 8.5 145 49-199 16-179 (179)
190 TIGR00487 IF-2 translation ini 99.7 5.7E-16 1.2E-20 144.6 13.3 134 50-207 86-247 (587)
191 PRK09518 bifunctional cytidyla 99.7 4.3E-16 9.4E-21 149.3 12.4 176 51-238 275-475 (712)
192 KOG1707|consensus 99.7 1.6E-16 3.5E-21 143.1 7.4 154 48-212 6-177 (625)
193 COG1160 Predicted GTPases [Gen 99.6 3.2E-15 6.9E-20 132.3 14.7 161 50-216 177-357 (444)
194 COG1160 Predicted GTPases [Gen 99.6 1.1E-15 2.4E-20 135.2 11.5 173 53-238 5-203 (444)
195 cd01888 eIF2_gamma eIF2-gamma 99.6 8.7E-16 1.9E-20 125.8 9.4 109 88-211 83-200 (203)
196 PF10662 PduV-EutP: Ethanolami 99.6 1.3E-15 2.7E-20 116.6 9.2 139 53-206 3-142 (143)
197 TIGR00475 selB selenocysteine- 99.6 1.9E-15 4E-20 141.5 12.1 140 53-211 2-167 (581)
198 cd01876 YihA_EngB The YihA (En 99.6 1.7E-15 3.8E-20 118.7 9.5 147 54-208 2-169 (170)
199 CHL00189 infB translation init 99.6 2.3E-15 4.9E-20 142.8 11.8 138 50-209 243-409 (742)
200 TIGR00491 aIF-2 translation in 99.6 3.4E-15 7.4E-20 139.2 12.7 138 52-208 5-214 (590)
201 TIGR00483 EF-1_alpha translati 99.6 2.5E-15 5.4E-20 136.3 9.7 143 47-202 3-199 (426)
202 PRK05306 infB translation init 99.6 6.1E-15 1.3E-19 141.0 12.4 135 50-208 289-450 (787)
203 COG0486 ThdF Predicted GTPase 99.6 4E-15 8.7E-20 132.0 10.3 150 50-212 216-378 (454)
204 PRK05433 GTP-binding protein L 99.6 6.8E-15 1.5E-19 138.0 11.9 142 53-212 9-186 (600)
205 COG2229 Predicted GTPase [Gene 99.5 1.1E-13 2.3E-18 108.6 12.1 144 48-208 7-176 (187)
206 PRK04004 translation initiatio 99.5 6.2E-14 1.4E-18 131.2 12.6 140 50-208 5-216 (586)
207 PRK12317 elongation factor 1-a 99.5 4.4E-14 9.5E-19 128.2 11.2 142 49-202 4-197 (425)
208 COG0370 FeoB Fe2+ transport sy 99.5 6E-14 1.3E-18 129.5 12.1 153 52-213 4-167 (653)
209 COG2262 HflX GTPases [General 99.5 2.1E-13 4.5E-18 119.2 13.1 151 52-212 193-358 (411)
210 KOG1423|consensus 99.5 5.9E-14 1.3E-18 118.1 9.2 168 47-219 68-280 (379)
211 cd04166 CysN_ATPS CysN_ATPS su 99.5 5.2E-14 1.1E-18 115.7 8.8 136 53-201 1-185 (208)
212 TIGR03680 eif2g_arch translati 99.5 5.8E-14 1.3E-18 126.6 9.8 144 51-210 4-196 (406)
213 PRK10512 selenocysteinyl-tRNA- 99.5 1.3E-13 2.9E-18 129.6 11.8 141 53-210 2-166 (614)
214 KOG0077|consensus 99.5 8.3E-14 1.8E-18 107.1 7.1 145 50-207 19-190 (193)
215 PF00009 GTP_EFTU: Elongation 99.5 1.7E-13 3.7E-18 110.8 9.3 146 51-210 3-187 (188)
216 smart00010 small_GTPase Small 99.5 1.6E-13 3.4E-18 102.7 8.4 114 52-199 1-115 (124)
217 TIGR01394 TypA_BipA GTP-bindin 99.5 1.8E-13 3.8E-18 128.2 10.3 144 53-212 3-193 (594)
218 cd04104 p47_IIGP_like p47 (47- 99.5 6.2E-13 1.3E-17 108.4 12.2 148 52-213 2-187 (197)
219 PRK04000 translation initiatio 99.5 3.6E-13 7.7E-18 121.5 10.5 145 50-210 8-201 (411)
220 KOG1489|consensus 99.4 1E-12 2.2E-17 111.2 11.7 143 54-207 199-364 (366)
221 PRK10218 GTP-binding protein; 99.4 6.7E-13 1.4E-17 124.4 11.5 145 52-212 6-197 (607)
222 COG0218 Predicted GTPase [Gene 99.4 7.8E-13 1.7E-17 105.8 9.9 150 54-210 27-197 (200)
223 cd04167 Snu114p Snu114p subfam 99.4 4.8E-13 1E-17 110.4 8.4 98 53-166 2-136 (213)
224 COG0536 Obg Predicted GTPase [ 99.4 3E-12 6.4E-17 109.6 11.5 152 54-213 162-336 (369)
225 cd04165 GTPBP1_like GTPBP1-lik 99.4 5.7E-12 1.2E-16 104.7 12.8 107 89-206 85-219 (224)
226 cd04168 TetM_like Tet(M)-like 99.4 3.3E-12 7.3E-17 107.0 11.5 97 54-166 2-129 (237)
227 TIGR00157 ribosome small subun 99.4 2.8E-12 6.1E-17 108.0 10.3 116 100-236 27-143 (245)
228 KOG1532|consensus 99.4 1.3E-11 2.8E-16 102.7 13.6 139 89-231 117-285 (366)
229 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 5.7E-12 1.2E-16 104.7 10.9 154 53-212 1-178 (232)
230 cd01899 Ygr210 Ygr210 subfamil 99.3 5.2E-12 1.1E-16 109.9 9.6 56 153-212 214-271 (318)
231 cd01883 EF1_alpha Eukaryotic e 99.3 2.5E-12 5.3E-17 106.6 7.2 99 89-199 78-194 (219)
232 COG1084 Predicted GTPase [Gene 99.3 1.1E-11 2.4E-16 105.7 10.1 151 52-211 169-337 (346)
233 cd01884 EF_Tu EF-Tu subfamily. 99.3 2.9E-11 6.2E-16 98.5 11.3 134 51-198 2-171 (195)
234 PRK09866 hypothetical protein; 99.3 6.1E-11 1.3E-15 109.7 14.3 137 91-239 233-376 (741)
235 KOG1191|consensus 99.3 6.5E-12 1.4E-16 111.8 7.5 163 50-214 267-454 (531)
236 COG1163 DRG Predicted GTPase [ 99.3 1E-10 2.2E-15 99.6 14.2 149 53-210 65-289 (365)
237 TIGR00485 EF-Tu translation el 99.3 3.9E-11 8.5E-16 107.9 11.7 137 46-196 7-179 (394)
238 PRK12736 elongation factor Tu; 99.3 4.2E-11 9.1E-16 107.6 11.6 150 47-210 8-201 (394)
239 PRK12735 elongation factor Tu; 99.3 4.7E-11 1E-15 107.4 11.7 150 46-209 7-202 (396)
240 PF09439 SRPRB: Signal recogni 99.3 1.1E-11 2.5E-16 98.8 6.6 106 54-167 6-126 (181)
241 cd04169 RF3 RF3 subfamily. Pe 99.2 3E-11 6.5E-16 103.0 9.3 98 54-167 5-137 (267)
242 cd01850 CDC_Septin CDC/Septin. 99.2 2.8E-11 6.1E-16 103.6 9.1 134 51-193 4-185 (276)
243 COG4917 EutP Ethanolamine util 99.2 1.4E-11 2.9E-16 90.8 5.9 140 53-207 3-143 (148)
244 PRK13351 elongation factor G; 99.2 5.3E-11 1.2E-15 114.2 11.5 100 51-166 8-138 (687)
245 PF01926 MMR_HSR1: 50S ribosom 99.2 4.5E-11 9.7E-16 88.9 7.1 100 53-162 1-116 (116)
246 cd01885 EF2 EF2 (for archaea a 99.2 9E-11 1.9E-15 97.3 8.9 107 54-176 3-149 (222)
247 cd00066 G-alpha G protein alph 99.2 1.8E-10 3.8E-15 100.7 11.1 115 89-213 162-314 (317)
248 PRK00741 prfC peptide chain re 99.2 1.5E-10 3.2E-15 107.3 10.5 99 52-166 11-144 (526)
249 TIGR00101 ureG urease accessor 99.2 3E-10 6.6E-15 92.7 11.0 82 120-210 113-196 (199)
250 KOG1490|consensus 99.2 2.4E-10 5.3E-15 102.0 11.1 162 54-219 171-350 (620)
251 PRK13768 GTPase; Provisional 99.2 1.8E-10 3.8E-15 97.5 9.8 113 89-210 98-247 (253)
252 PRK05124 cysN sulfate adenylyl 99.2 1.1E-10 2.4E-15 107.1 9.1 141 48-201 24-216 (474)
253 CHL00071 tufA elongation facto 99.1 3.6E-10 7.8E-15 102.1 11.2 138 47-198 8-181 (409)
254 PRK09602 translation-associate 99.1 3.2E-10 6.8E-15 101.7 10.6 55 153-211 217-272 (396)
255 TIGR02034 CysN sulfate adenyly 99.1 1.7E-10 3.8E-15 104.0 8.9 136 52-200 1-187 (406)
256 PLN00043 elongation factor 1-a 99.1 2.7E-10 5.9E-15 103.8 10.1 136 48-200 4-203 (447)
257 TIGR00073 hypB hydrogenase acc 99.1 5.2E-10 1.1E-14 91.9 10.7 56 153-208 148-205 (207)
258 cd01852 AIG1 AIG1 (avrRpt2-ind 99.1 2.3E-09 5E-14 87.2 14.0 155 53-211 2-185 (196)
259 cd04170 EF-G_bact Elongation f 99.1 5.3E-10 1.1E-14 95.5 10.2 127 54-198 2-161 (268)
260 PRK05506 bifunctional sulfate 99.1 3.4E-10 7.3E-15 107.6 9.8 138 50-200 23-211 (632)
261 smart00275 G_alpha G protein a 99.1 7.8E-10 1.7E-14 97.5 10.9 115 89-213 185-337 (342)
262 PLN03126 Elongation factor Tu; 99.1 4.8E-10 1E-14 102.7 9.8 137 48-198 78-250 (478)
263 cd01886 EF-G Elongation factor 99.1 2.8E-10 6E-15 97.2 7.7 98 54-167 2-130 (270)
264 COG3596 Predicted GTPase [Gene 99.1 5.8E-10 1.3E-14 93.2 9.2 156 48-210 36-222 (296)
265 KOG0090|consensus 99.1 2.8E-09 6.1E-14 85.7 12.2 146 54-208 41-237 (238)
266 KOG1707|consensus 99.1 1.3E-09 2.8E-14 99.0 11.4 156 49-213 423-586 (625)
267 PRK09435 membrane ATPase/prote 99.1 2.9E-09 6.3E-14 93.0 13.3 107 89-215 150-265 (332)
268 COG0532 InfB Translation initi 99.1 4.5E-09 9.7E-14 95.1 14.1 137 53-211 7-171 (509)
269 PRK14845 translation initiatio 99.0 2.4E-09 5.2E-14 105.2 13.2 101 90-208 528-671 (1049)
270 PRK00049 elongation factor Tu; 99.0 2.6E-09 5.7E-14 96.1 12.4 137 46-196 7-179 (396)
271 PLN03127 Elongation factor Tu; 99.0 2.6E-09 5.6E-14 97.3 12.3 151 45-209 55-251 (447)
272 KOG0705|consensus 99.0 1.4E-09 3E-14 98.1 8.5 160 45-215 24-194 (749)
273 TIGR00484 EF-G translation elo 99.0 2.8E-09 6.1E-14 102.3 11.0 126 52-195 11-171 (689)
274 KOG3905|consensus 99.0 1.2E-08 2.5E-13 87.1 12.2 151 54-212 55-292 (473)
275 TIGR00991 3a0901s02IAP34 GTP-b 98.9 3.6E-09 7.9E-14 91.0 8.6 117 48-166 35-166 (313)
276 PRK12740 elongation factor G; 98.9 4.6E-09 9.9E-14 100.6 10.1 94 57-166 1-125 (668)
277 TIGR00750 lao LAO/AO transport 98.9 6.6E-09 1.4E-13 90.1 9.7 83 119-210 147-238 (300)
278 PTZ00141 elongation factor 1- 98.9 1.1E-08 2.4E-13 93.3 11.0 140 48-200 4-203 (446)
279 TIGR00503 prfC peptide chain r 98.9 4.4E-09 9.6E-14 97.6 7.7 101 51-167 11-146 (527)
280 cd01855 YqeH YqeH. YqeH is an 98.9 5.5E-09 1.2E-13 84.5 6.8 111 119-238 34-152 (190)
281 PRK12739 elongation factor G; 98.9 1.9E-08 4.1E-13 96.6 11.4 103 50-166 7-138 (691)
282 cd01853 Toc34_like Toc34-like 98.9 7.7E-09 1.7E-13 87.2 7.5 116 49-166 29-162 (249)
283 KOG1145|consensus 98.8 5.6E-08 1.2E-12 88.0 13.1 137 50-209 152-315 (683)
284 PRK12288 GTPase RsgA; Reviewed 98.8 7.9E-09 1.7E-13 91.1 7.6 110 119-238 120-230 (347)
285 PF05783 DLIC: Dynein light in 98.8 8.9E-08 1.9E-12 87.3 14.6 152 54-213 28-267 (472)
286 PTZ00327 eukaryotic translatio 98.8 1.8E-08 3.9E-13 91.9 9.7 151 47-210 30-233 (460)
287 PF03029 ATP_bind_1: Conserved 98.8 1.9E-09 4.1E-14 90.4 3.0 117 89-209 92-236 (238)
288 PTZ00258 GTP-binding protein; 98.8 3.5E-08 7.5E-13 87.9 11.1 78 49-129 19-125 (390)
289 KOG0410|consensus 98.8 1.9E-09 4.1E-14 91.8 2.9 142 54-210 181-341 (410)
290 cd01854 YjeQ_engC YjeQ/EngC. 98.8 2E-08 4.3E-13 86.6 8.8 83 119-207 78-161 (287)
291 PRK00098 GTPase RsgA; Reviewed 98.8 1.8E-08 4E-13 87.3 8.2 109 118-237 79-188 (298)
292 PRK12289 GTPase RsgA; Reviewed 98.8 3.4E-08 7.3E-13 87.2 9.1 109 118-238 88-197 (352)
293 PF05049 IIGP: Interferon-indu 98.8 5.1E-08 1.1E-12 86.1 10.1 152 50-215 34-223 (376)
294 cd01882 BMS1 Bms1. Bms1 is an 98.7 3.7E-08 8E-13 82.0 7.9 129 52-197 40-183 (225)
295 KOG3886|consensus 98.7 3.1E-07 6.7E-12 75.0 12.5 142 52-206 5-174 (295)
296 COG0378 HypB Ni2+-binding GTPa 98.7 1.8E-07 3.9E-12 74.7 11.0 55 155-209 144-200 (202)
297 PRK10463 hydrogenase nickel in 98.7 9.4E-08 2E-12 81.8 9.9 56 153-208 230-287 (290)
298 PF04548 AIG1: AIG1 family; I 98.7 8.4E-08 1.8E-12 79.1 8.7 158 52-213 1-189 (212)
299 TIGR00490 aEF-2 translation el 98.7 1.8E-08 3.8E-13 97.2 5.3 100 51-166 19-151 (720)
300 TIGR02836 spore_IV_A stage IV 98.7 4.7E-07 1E-11 80.4 13.3 151 51-208 17-235 (492)
301 KOG0462|consensus 98.7 2E-07 4.3E-12 84.5 11.1 145 53-216 62-241 (650)
302 PRK00007 elongation factor G; 98.7 2.1E-07 4.5E-12 89.5 11.6 130 50-195 9-171 (693)
303 COG5256 TEF1 Translation elong 98.6 6.5E-08 1.4E-12 85.2 7.1 141 49-200 5-201 (428)
304 KOG0082|consensus 98.6 4.3E-07 9.3E-12 79.4 12.0 115 89-213 196-347 (354)
305 COG0481 LepA Membrane GTPase L 98.6 2E-07 4.4E-12 83.2 9.2 145 54-215 12-191 (603)
306 PRK09601 GTP-binding protein Y 98.6 6.6E-07 1.4E-11 79.0 12.3 45 154-198 200-245 (364)
307 cd01859 MJ1464 MJ1464. This f 98.6 1E-07 2.2E-12 74.6 6.4 112 119-237 12-125 (156)
308 COG0012 Predicted GTPase, prob 98.6 8.6E-07 1.9E-11 77.5 11.3 71 52-130 3-108 (372)
309 PF03308 ArgK: ArgK protein; 98.5 1.2E-07 2.6E-12 79.3 5.2 82 119-210 142-230 (266)
310 cd01858 NGP_1 NGP-1. Autoanti 98.5 3.2E-07 7E-12 71.9 6.7 117 116-238 5-127 (157)
311 TIGR00993 3a0901s04IAP86 chlor 98.5 5.1E-07 1.1E-11 84.4 8.8 115 51-166 118-249 (763)
312 TIGR03597 GTPase_YqeH ribosome 98.5 4.7E-07 1E-11 80.5 8.0 110 119-238 63-179 (360)
313 PF00350 Dynamin_N: Dynamin fa 98.5 2.6E-07 5.6E-12 72.9 5.7 67 89-163 102-168 (168)
314 KOG1144|consensus 98.4 1.8E-06 4E-11 80.8 11.1 144 49-211 473-688 (1064)
315 smart00053 DYNc Dynamin, GTPas 98.4 7.4E-07 1.6E-11 74.7 7.2 74 89-167 126-206 (240)
316 cd01849 YlqF_related_GTPase Yl 98.4 2.1E-06 4.5E-11 67.2 8.6 113 121-238 1-125 (155)
317 COG1703 ArgK Putative periplas 98.4 4.1E-06 8.9E-11 71.2 10.8 102 89-211 145-255 (323)
318 COG2895 CysN GTPases - Sulfate 98.3 4.5E-06 9.7E-11 72.3 9.4 135 50-199 5-192 (431)
319 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 2.1E-06 4.6E-11 66.0 5.9 74 117-197 9-84 (141)
320 cd01856 YlqF YlqF. Proteins o 98.2 3.2E-06 6.9E-11 67.2 6.6 86 116-210 16-101 (171)
321 COG5257 GCD11 Translation init 98.2 3.6E-06 7.8E-11 72.1 6.8 149 51-215 10-207 (415)
322 KOG1486|consensus 98.2 4.9E-05 1.1E-09 63.2 13.2 147 52-210 63-288 (364)
323 PTZ00416 elongation factor 2; 98.1 6E-06 1.3E-10 81.0 7.3 100 53-166 21-157 (836)
324 TIGR03596 GTPase_YlqF ribosome 98.1 1.3E-05 2.8E-10 68.8 8.3 112 118-238 20-143 (276)
325 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 3E-06 6.6E-11 65.1 4.0 45 53-98 85-138 (141)
326 PLN00116 translation elongatio 98.1 5.9E-06 1.3E-10 81.2 6.7 102 51-166 19-163 (843)
327 PRK13796 GTPase YqeH; Provisio 98.1 2.1E-05 4.5E-10 70.1 9.2 108 119-236 68-183 (365)
328 PF00735 Septin: Septin; Inte 98.1 4.2E-05 9.1E-10 65.7 10.4 108 51-165 4-154 (281)
329 PRK01889 GTPase RsgA; Reviewed 98.1 2.8E-05 6.1E-10 69.1 9.6 82 118-206 111-193 (356)
330 PRK09563 rbgA GTPase YlqF; Rev 98.0 1.9E-05 4E-10 68.2 8.1 112 118-238 23-146 (287)
331 KOG0458|consensus 98.0 1.4E-05 3E-10 73.3 7.1 140 50-201 176-373 (603)
332 cd01858 NGP_1 NGP-1. Autoanti 98.0 7.4E-06 1.6E-10 64.1 4.4 24 51-75 102-125 (157)
333 cd01900 YchF YchF subfamily. 98.0 9.8E-06 2.1E-10 69.3 5.2 73 54-129 1-102 (274)
334 KOG3887|consensus 98.0 0.00013 2.8E-09 60.4 11.3 146 54-214 30-206 (347)
335 KOG0461|consensus 98.0 6.6E-05 1.4E-09 65.1 9.9 142 52-212 8-195 (522)
336 PRK07560 elongation factor EF- 98.0 1E-05 2.2E-10 78.4 5.6 100 53-166 22-152 (731)
337 cd01859 MJ1464 MJ1464. This f 97.9 1E-05 2.3E-10 63.1 4.1 46 51-97 101-155 (156)
338 cd04178 Nucleostemin_like Nucl 97.9 8.7E-06 1.9E-10 64.9 3.6 45 52-97 118-171 (172)
339 COG1217 TypA Predicted membran 97.9 0.00013 2.8E-09 65.6 10.7 144 54-213 8-198 (603)
340 PRK09563 rbgA GTPase YlqF; Rev 97.9 1.5E-05 3.2E-10 68.8 4.4 49 50-99 120-177 (287)
341 cd01856 YlqF YlqF. Proteins o 97.8 1.9E-05 4.1E-10 62.7 4.1 47 51-98 115-170 (171)
342 TIGR03596 GTPase_YlqF ribosome 97.8 2.1E-05 4.5E-10 67.5 4.1 49 50-99 117-174 (276)
343 TIGR03348 VI_IcmF type VI secr 97.8 3.3E-05 7.1E-10 78.5 5.6 109 54-166 114-256 (1169)
344 KOG0468|consensus 97.7 5.3E-05 1.1E-09 70.5 5.9 103 49-165 126-261 (971)
345 KOG2486|consensus 97.7 4.2E-05 9.1E-10 64.4 4.7 143 50-207 135-313 (320)
346 cd01855 YqeH YqeH. YqeH is an 97.7 2.3E-05 5E-10 63.3 3.0 22 52-74 128-149 (190)
347 PRK10416 signal recognition pa 97.7 0.00045 9.7E-09 60.5 10.7 70 119-202 232-302 (318)
348 COG1161 Predicted GTPases [Gen 97.7 3.5E-05 7.6E-10 67.5 3.7 50 49-99 130-188 (322)
349 PRK14974 cell division protein 97.7 0.0003 6.4E-09 61.9 9.3 100 89-204 224-324 (336)
350 PF03193 DUF258: Protein of un 97.7 2E-05 4.4E-10 61.8 1.8 21 54-75 38-58 (161)
351 KOG1954|consensus 97.6 0.00014 3.1E-09 63.6 6.9 72 89-166 148-224 (532)
352 KOG0448|consensus 97.6 0.00037 7.9E-09 65.3 9.4 46 119-169 232-277 (749)
353 KOG1491|consensus 97.5 0.0001 2.2E-09 63.8 4.5 73 49-129 18-124 (391)
354 TIGR00064 ftsY signal recognit 97.5 0.00047 1E-08 59.0 8.5 71 119-203 190-261 (272)
355 cd01849 YlqF_related_GTPase Yl 97.5 0.0001 2.2E-09 57.5 3.9 24 51-75 100-123 (155)
356 COG1162 Predicted GTPases [Gen 97.4 0.0019 4.2E-08 55.5 11.1 89 119-211 79-168 (301)
357 COG4108 PrfC Peptide chain rel 97.4 0.00055 1.2E-08 61.2 7.7 100 53-167 14-147 (528)
358 COG3276 SelB Selenocysteine-sp 97.4 0.001 2.2E-08 59.5 9.4 140 54-210 3-162 (447)
359 KOG1143|consensus 97.4 0.0024 5.3E-08 56.1 11.3 80 119-203 274-381 (591)
360 PRK12288 GTPase RsgA; Reviewed 97.4 0.00011 2.3E-09 65.1 3.0 21 54-75 208-228 (347)
361 KOG0099|consensus 97.4 0.00041 8.8E-09 58.1 6.1 66 90-165 204-281 (379)
362 KOG4273|consensus 97.4 0.00086 1.9E-08 55.9 7.7 144 54-207 7-219 (418)
363 PF00503 G-alpha: G-protein al 97.4 0.00079 1.7E-08 60.6 8.1 109 90-208 238-388 (389)
364 COG0480 FusA Translation elong 97.3 0.00038 8.3E-09 66.6 5.7 100 53-166 12-141 (697)
365 PRK12289 GTPase RsgA; Reviewed 97.3 0.00019 4.1E-09 63.6 3.3 21 54-75 175-195 (352)
366 TIGR00157 ribosome small subun 97.3 0.00017 3.7E-09 60.8 2.7 22 53-75 122-143 (245)
367 cd01851 GBP Guanylate-binding 97.3 0.0011 2.4E-08 55.1 7.4 80 50-133 6-105 (224)
368 TIGR03597 GTPase_YqeH ribosome 97.3 0.00021 4.6E-09 63.6 3.3 21 53-74 156-176 (360)
369 TIGR01425 SRP54_euk signal rec 97.3 0.0019 4.2E-08 58.5 9.4 89 89-190 184-272 (429)
370 TIGR00092 GTP-binding protein 97.2 0.00055 1.2E-08 60.7 5.7 71 52-130 3-108 (368)
371 COG5019 CDC3 Septin family pro 97.2 0.0027 5.8E-08 55.7 9.6 23 52-75 24-46 (373)
372 KOG0447|consensus 97.2 0.005 1.1E-07 56.7 11.5 89 89-182 413-508 (980)
373 COG3523 IcmF Type VI protein s 97.2 0.00061 1.3E-08 68.3 5.8 109 54-166 128-269 (1188)
374 cd03112 CobW_like The function 97.1 0.00074 1.6E-08 53.0 4.8 20 54-74 3-22 (158)
375 PF00448 SRP54: SRP54-type pro 97.1 0.0014 3.1E-08 53.3 6.5 66 119-198 113-179 (196)
376 COG0050 TufB GTPases - transla 97.1 0.0022 4.7E-08 54.8 7.6 148 47-211 8-202 (394)
377 KOG1547|consensus 97.1 0.0018 3.9E-08 53.7 6.8 151 51-207 46-240 (336)
378 PF06858 NOG1: Nucleolar GTP-b 97.0 0.0026 5.6E-08 40.8 5.7 44 119-164 13-58 (58)
379 PRK13796 GTPase YqeH; Provisio 97.0 0.00052 1.1E-08 61.3 3.5 21 53-74 162-182 (365)
380 COG3640 CooC CO dehydrogenase 97.0 0.012 2.5E-07 48.9 10.7 57 119-186 155-212 (255)
381 COG1162 Predicted GTPases [Gen 97.0 0.00044 9.6E-09 59.4 2.5 21 54-75 167-187 (301)
382 PRK14722 flhF flagellar biosyn 97.0 0.0065 1.4E-07 54.2 9.8 75 119-199 245-321 (374)
383 COG5258 GTPBP1 GTPase [General 97.0 0.0083 1.8E-07 53.1 10.1 25 49-74 115-139 (527)
384 KOG2655|consensus 97.0 0.0086 1.9E-07 52.8 10.2 22 52-74 22-43 (366)
385 PRK00098 GTPase RsgA; Reviewed 97.0 0.00065 1.4E-08 59.0 3.2 21 54-75 167-187 (298)
386 PRK00771 signal recognition pa 96.9 0.0043 9.2E-08 56.6 8.5 90 89-192 177-267 (437)
387 PRK14721 flhF flagellar biosyn 96.9 0.0036 7.8E-08 56.7 7.8 65 120-198 300-365 (420)
388 KOG1487|consensus 96.9 0.0093 2E-07 50.1 9.5 79 52-134 60-151 (358)
389 PRK12727 flagellar biosynthesi 96.9 0.0055 1.2E-07 56.8 8.8 64 122-198 460-523 (559)
390 TIGR00959 ffh signal recogniti 96.9 0.0061 1.3E-07 55.4 9.0 91 89-192 184-274 (428)
391 cd01854 YjeQ_engC YjeQ/EngC. 96.8 0.00081 1.8E-08 58.0 2.9 22 53-75 163-184 (287)
392 PRK10867 signal recognition pa 96.8 0.0057 1.2E-07 55.7 8.3 63 119-192 213-275 (433)
393 COG1419 FlhF Flagellar GTP-bin 96.7 0.013 2.7E-07 52.5 9.7 94 89-198 283-377 (407)
394 PRK11889 flhF flagellar biosyn 96.7 0.0096 2.1E-07 53.4 8.7 97 89-200 322-418 (436)
395 cd01983 Fer4_NifH The Fer4_Nif 96.7 0.007 1.5E-07 42.2 6.6 95 54-161 2-99 (99)
396 COG5192 BMS1 GTP-binding prote 96.6 0.0082 1.8E-07 55.5 7.8 99 52-167 70-177 (1077)
397 PF11111 CENP-M: Centromere pr 96.5 0.043 9.2E-07 43.4 10.3 137 51-211 15-154 (176)
398 cd03114 ArgK-like The function 96.5 0.0072 1.6E-07 46.9 6.0 16 54-69 2-17 (148)
399 cd03115 SRP The signal recogni 96.5 0.015 3.3E-07 45.9 7.8 16 54-69 3-18 (173)
400 cd00009 AAA The AAA+ (ATPases 96.5 0.0057 1.2E-07 45.8 5.1 20 54-74 22-41 (151)
401 KOG0466|consensus 96.5 0.0046 1E-07 53.1 4.8 59 154-212 180-243 (466)
402 PRK14723 flhF flagellar biosyn 96.4 0.021 4.6E-07 55.3 9.3 69 119-198 293-362 (767)
403 PRK06995 flhF flagellar biosyn 96.4 0.019 4.1E-07 53.0 8.6 62 123-198 368-430 (484)
404 KOG1424|consensus 96.4 0.0029 6.3E-08 57.7 3.2 47 51-98 314-369 (562)
405 PRK12726 flagellar biosynthesi 96.3 0.021 4.7E-07 51.0 8.5 68 119-199 315-382 (407)
406 cd02038 FleN-like FleN is a me 96.3 0.016 3.5E-07 44.2 6.8 94 55-165 4-109 (139)
407 PF13207 AAA_17: AAA domain; P 96.3 0.0021 4.5E-08 47.5 1.7 21 53-74 1-21 (121)
408 PF09547 Spore_IV_A: Stage IV 96.3 0.08 1.7E-06 47.8 11.7 81 120-206 146-233 (492)
409 KOG0085|consensus 96.3 0.007 1.5E-07 50.1 4.6 62 152-213 265-352 (359)
410 KOG0463|consensus 96.2 0.036 7.8E-07 49.0 9.2 23 47-69 129-151 (641)
411 PRK05703 flhF flagellar biosyn 96.2 0.036 7.9E-07 50.5 9.5 64 121-198 332-396 (424)
412 KOG2485|consensus 96.2 0.0047 1E-07 53.1 3.5 21 52-73 144-164 (335)
413 PRK08099 bifunctional DNA-bind 96.1 0.0071 1.5E-07 54.6 4.5 24 50-74 218-241 (399)
414 COG1116 TauB ABC-type nitrate/ 96.1 0.0033 7.2E-08 52.5 2.1 20 54-74 32-51 (248)
415 PRK08118 topology modulation p 96.1 0.003 6.4E-08 50.1 1.7 21 53-74 3-23 (167)
416 COG1136 SalX ABC-type antimicr 96.1 0.0036 7.8E-08 51.9 2.1 16 54-69 34-49 (226)
417 PRK12723 flagellar biosynthesi 96.0 0.04 8.7E-07 49.6 8.8 95 89-198 256-351 (388)
418 PF13671 AAA_33: AAA domain; P 96.0 0.0036 7.7E-08 47.6 1.8 20 54-74 2-21 (143)
419 COG0563 Adk Adenylate kinase a 96.0 0.003 6.6E-08 50.6 1.4 22 52-74 1-22 (178)
420 PRK07261 topology modulation p 96.0 0.0039 8.5E-08 49.5 2.0 21 53-74 2-22 (171)
421 cd02042 ParA ParA and ParB of 96.0 0.028 6.1E-07 40.3 6.3 77 54-143 2-84 (104)
422 cd03110 Fer4_NifH_child This p 95.9 0.043 9.4E-07 43.5 7.8 82 89-188 94-175 (179)
423 cd02036 MinD Bacterial cell di 95.9 0.079 1.7E-06 41.6 9.2 84 89-188 64-147 (179)
424 PF13521 AAA_28: AAA domain; P 95.9 0.0037 8E-08 49.0 1.3 21 53-74 1-21 (163)
425 PRK12724 flagellar biosynthesi 95.8 0.03 6.6E-07 50.7 7.0 22 52-74 224-245 (432)
426 KOG1533|consensus 95.8 0.014 2.9E-07 48.5 4.3 16 54-69 5-20 (290)
427 KOG2484|consensus 95.7 0.0048 1E-07 54.7 1.6 48 50-98 251-307 (435)
428 PF00005 ABC_tran: ABC transpo 95.7 0.0067 1.5E-07 45.8 2.2 20 54-74 14-33 (137)
429 cd03111 CpaE_like This protein 95.6 0.033 7.1E-07 40.5 5.4 93 57-162 6-106 (106)
430 COG0523 Putative GTPases (G3E 95.6 0.1 2.3E-06 45.7 9.3 66 119-192 116-184 (323)
431 cd02019 NK Nucleoside/nucleoti 95.5 0.0071 1.5E-07 40.4 1.5 20 54-74 2-21 (69)
432 COG1161 Predicted GTPases [Gen 95.5 0.032 6.8E-07 49.0 6.0 119 119-245 34-164 (322)
433 PF13555 AAA_29: P-loop contai 95.5 0.0083 1.8E-07 39.3 1.8 16 54-69 26-41 (62)
434 TIGR00150 HI0065_YjeE ATPase, 95.5 0.014 3.1E-07 44.3 3.4 40 54-94 25-64 (133)
435 KOG1534|consensus 95.5 0.043 9.3E-07 44.9 6.0 16 54-69 6-21 (273)
436 PRK06217 hypothetical protein; 95.5 0.0089 1.9E-07 47.9 2.1 22 52-74 2-23 (183)
437 COG3840 ThiQ ABC-type thiamine 95.4 0.0086 1.9E-07 48.0 1.9 20 54-74 28-47 (231)
438 COG4525 TauB ABC-type taurine 95.4 0.0081 1.8E-07 48.6 1.8 20 54-74 34-53 (259)
439 PF00004 AAA: ATPase family as 95.4 0.0077 1.7E-07 44.8 1.5 20 54-74 1-20 (132)
440 COG3638 ABC-type phosphate/pho 95.4 0.009 2E-07 49.6 2.0 15 54-68 33-47 (258)
441 cd00071 GMPK Guanosine monopho 95.4 0.0088 1.9E-07 45.7 1.8 20 54-74 2-21 (137)
442 TIGR02322 phosphon_PhnN phosph 95.4 0.0081 1.8E-07 47.8 1.6 20 54-74 4-23 (179)
443 PRK10078 ribose 1,5-bisphospho 95.4 0.0089 1.9E-07 48.0 1.9 21 53-74 4-24 (186)
444 COG1126 GlnQ ABC-type polar am 95.4 0.0086 1.9E-07 49.1 1.7 23 189-211 163-185 (240)
445 PF13238 AAA_18: AAA domain; P 95.3 0.0097 2.1E-07 44.1 1.8 20 54-74 1-20 (129)
446 PF03266 NTPase_1: NTPase; In 95.3 0.0092 2E-07 47.3 1.7 39 152-198 124-163 (168)
447 PRK01889 GTPase RsgA; Reviewed 95.2 0.01 2.2E-07 52.9 2.0 21 53-74 197-217 (356)
448 TIGR03263 guanyl_kin guanylate 95.2 0.011 2.4E-07 47.0 1.9 21 53-74 3-23 (180)
449 smart00382 AAA ATPases associa 95.2 0.012 2.6E-07 43.5 2.0 21 53-74 4-24 (148)
450 COG4639 Predicted kinase [Gene 95.2 0.011 2.5E-07 45.8 1.8 16 54-69 5-20 (168)
451 PF07728 AAA_5: AAA domain (dy 95.2 0.011 2.4E-07 44.9 1.7 20 54-74 2-21 (139)
452 COG3839 MalK ABC-type sugar tr 95.2 0.012 2.6E-07 51.7 2.1 20 54-74 32-51 (338)
453 KOG2423|consensus 95.1 0.022 4.7E-07 50.7 3.6 47 50-97 306-361 (572)
454 cd00820 PEPCK_HprK Phosphoenol 95.1 0.012 2.6E-07 42.9 1.8 19 54-73 18-36 (107)
455 PRK14738 gmk guanylate kinase; 95.1 0.02 4.2E-07 46.9 3.2 24 50-74 12-35 (206)
456 PRK06731 flhF flagellar biosyn 95.1 0.096 2.1E-06 44.8 7.4 68 119-199 184-251 (270)
457 COG1618 Predicted nucleotide k 95.1 0.013 2.7E-07 45.9 1.8 23 51-74 5-27 (179)
458 PRK14737 gmk guanylate kinase; 95.1 0.016 3.4E-07 46.8 2.4 22 53-75 6-27 (186)
459 PF01580 FtsK_SpoIIIE: FtsK/Sp 95.1 0.059 1.3E-06 43.8 5.9 42 54-99 41-82 (205)
460 cd03238 ABC_UvrA The excision 95.0 0.014 3E-07 46.7 2.0 19 54-73 24-42 (176)
461 KOG0467|consensus 95.0 0.052 1.1E-06 51.9 5.9 91 54-164 12-135 (887)
462 PRK03839 putative kinase; Prov 95.0 0.012 2.5E-07 46.9 1.4 21 53-74 2-22 (180)
463 PF03205 MobB: Molybdopterin g 95.0 0.012 2.7E-07 45.1 1.5 20 54-74 3-22 (140)
464 KOG0066|consensus 94.9 0.073 1.6E-06 48.3 6.4 22 53-75 615-636 (807)
465 PF13401 AAA_22: AAA domain; P 94.9 0.014 3E-07 43.5 1.6 20 54-74 7-26 (131)
466 PF13191 AAA_16: AAA ATPase do 94.9 0.013 2.9E-07 46.3 1.5 20 54-74 27-46 (185)
467 PF04665 Pox_A32: Poxvirus A32 94.8 0.015 3.2E-07 48.7 1.7 22 52-74 14-35 (241)
468 TIGR01360 aden_kin_iso1 adenyl 94.8 0.016 3.4E-07 46.2 1.7 21 53-74 5-25 (188)
469 PRK14530 adenylate kinase; Pro 94.8 0.017 3.7E-07 47.5 2.0 21 53-74 5-25 (215)
470 COG1117 PstB ABC-type phosphat 94.8 0.015 3.3E-07 47.7 1.5 15 54-68 36-50 (253)
471 TIGR00960 3a0501s02 Type II (G 94.7 0.019 4.2E-07 47.1 2.2 20 54-74 32-51 (216)
472 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.7 0.019 4.2E-07 47.1 2.1 20 54-74 33-52 (218)
473 COG4962 CpaF Flp pilus assembl 94.7 0.031 6.8E-07 48.9 3.4 38 52-97 174-211 (355)
474 cd03222 ABC_RNaseL_inhibitor T 94.7 0.019 4.1E-07 45.9 1.9 20 54-74 28-47 (177)
475 PRK08233 hypothetical protein; 94.7 0.017 3.8E-07 45.7 1.7 22 52-74 4-25 (182)
476 cd03225 ABC_cobalt_CbiO_domain 94.7 0.018 4E-07 47.0 1.9 20 54-74 30-49 (211)
477 cd02023 UMPK Uridine monophosp 94.7 0.016 3.5E-07 46.9 1.5 20 54-74 2-21 (198)
478 cd03226 ABC_cobalt_CbiO_domain 94.7 0.021 4.5E-07 46.5 2.2 20 54-74 29-48 (205)
479 TIGR00235 udk uridine kinase. 94.6 0.016 3.6E-07 47.3 1.5 22 52-74 7-28 (207)
480 TIGR01166 cbiO cobalt transpor 94.6 0.02 4.3E-07 46.0 1.9 20 54-74 21-40 (190)
481 PRK13695 putative NTPase; Prov 94.6 0.017 3.6E-07 45.8 1.5 21 52-73 1-21 (174)
482 PRK05480 uridine/cytidine kina 94.6 0.02 4.3E-07 46.8 1.9 23 51-74 6-28 (209)
483 PRK00300 gmk guanylate kinase; 94.6 0.018 3.9E-07 46.7 1.7 20 54-74 8-27 (205)
484 COG0552 FtsY Signal recognitio 94.6 0.23 5E-06 43.4 8.4 68 120-201 258-326 (340)
485 cd03261 ABC_Org_Solvent_Resist 94.6 0.022 4.7E-07 47.4 2.2 20 54-74 29-48 (235)
486 cd03264 ABC_drug_resistance_li 94.6 0.02 4.4E-07 46.8 1.9 21 53-74 27-47 (211)
487 COG3842 PotA ABC-type spermidi 94.6 0.021 4.6E-07 50.5 2.1 20 54-74 34-53 (352)
488 PF05729 NACHT: NACHT domain 94.6 0.019 4.2E-07 44.3 1.7 20 54-74 3-22 (166)
489 COG0194 Gmk Guanylate kinase [ 94.6 0.019 4.2E-07 45.9 1.6 21 54-75 7-27 (191)
490 PRK13949 shikimate kinase; Pro 94.5 0.02 4.3E-07 45.4 1.7 21 53-74 3-23 (169)
491 cd03269 ABC_putative_ATPase Th 94.5 0.021 4.6E-07 46.6 1.9 20 54-74 29-48 (210)
492 PF00910 RNA_helicase: RNA hel 94.5 0.059 1.3E-06 39.2 4.1 20 54-74 1-20 (107)
493 cd03292 ABC_FtsE_transporter F 94.5 0.023 5E-07 46.4 2.1 20 54-74 30-49 (214)
494 cd03265 ABC_DrrA DrrA is the A 94.5 0.023 5E-07 46.8 2.1 20 54-74 29-48 (220)
495 TIGR02315 ABC_phnC phosphonate 94.5 0.023 5E-07 47.5 2.1 20 54-74 31-50 (243)
496 PRK14532 adenylate kinase; Pro 94.5 0.02 4.4E-07 45.9 1.7 21 53-74 2-22 (188)
497 TIGR03608 L_ocin_972_ABC putat 94.5 0.024 5.1E-07 46.1 2.1 20 54-74 27-46 (206)
498 COG1936 Predicted nucleotide k 94.5 0.02 4.4E-07 45.2 1.6 21 52-73 1-21 (180)
499 PF13173 AAA_14: AAA domain 94.5 0.022 4.7E-07 42.8 1.8 20 54-74 5-24 (128)
500 cd03224 ABC_TM1139_LivF_branch 94.5 0.022 4.8E-07 46.8 1.9 20 54-74 29-48 (222)
No 1
>KOG0084|consensus
Probab=100.00 E-value=4.4e-40 Score=258.24 Aligned_cols=158 Identities=20% Similarity=0.319 Sum_probs=141.9
Q ss_pred cccE-EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccc
Q psy5810 48 TYHH-VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCS 109 (250)
Q Consensus 48 ~~~~-~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~ 109 (250)
.+++ +||+|+|++|||||+|+. ||.+ +.|.+.+..|++ +++||||+||+ +.++..||+
T Consensus 5 ~~dylFKiiliGds~VGKtCL~~-Rf~~--~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR- 80 (205)
T KOG0084|consen 5 EYDYLFKIILIGDSGVGKTCLLL-RFKD--DTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYR- 80 (205)
T ss_pred ccceEEEEEEECCCCcChhhhhh-hhcc--CCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhcc-
Confidence 4444 689999999999999997 8999 777777777765 78999999997 788999999
Q ss_pred ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EE
Q psy5810 110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FV 188 (250)
Q Consensus 110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~ 188 (250)
+|||+|+|||+|+.+||+++..|+.++.++ ...++|.+|||||+|+.+.+.++.++++.|+.+++++ |+
T Consensus 81 ---------~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~-~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ 150 (205)
T KOG0084|consen 81 ---------GAHGIIFVYDITKQESFNNVKRWIQEIDRY-ASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFL 150 (205)
T ss_pred ---------CCCeEEEEEEcccHHHhhhHHHHHHHhhhh-ccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCccee
Confidence 999999999999999999999999999876 4567899999999999999999999999999999999 99
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGLNKKRNKLL 219 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~ 219 (250)
|+||+++.|+++.|..|+..+..+.......
T Consensus 151 ETSAK~~~NVe~~F~~la~~lk~~~~~~~~~ 181 (205)
T KOG0084|consen 151 ETSAKDSTNVEDAFLTLAKELKQRKGLHVKW 181 (205)
T ss_pred ecccCCccCHHHHHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999988766554433
No 2
>KOG0092|consensus
Probab=100.00 E-value=1.8e-38 Score=248.30 Aligned_cols=155 Identities=23% Similarity=0.349 Sum_probs=141.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+++|+.|||||||+. ||.. +.|.+...+|++ ++.||||+||| +++.++||+
T Consensus 4 ~~~KvvLLG~~~VGKSSlV~-Rfvk--~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyR---- 76 (200)
T KOG0092|consen 4 REFKVVLLGDSGVGKSSLVL-RFVK--DQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYR---- 76 (200)
T ss_pred ceEEEEEECCCCCCchhhhh-hhhh--CccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceec----
Confidence 45789999999999999997 8999 777777667765 67799999998 799999999
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
+|+++|+|||+++.+||..++.|++++.+. ..+++-+.|||||+||.+.|.|..+++..+|+..|+.|+|+||
T Consensus 77 ------gA~AAivvYDit~~~SF~~aK~WvkeL~~~-~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSA 149 (200)
T KOG0092|consen 77 ------GANAAIVVYDITDEESFEKAKNWVKELQRQ-ASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSA 149 (200)
T ss_pred ------CCcEEEEEEecccHHHHHHHHHHHHHHHhh-CCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEec
Confidence 999999999999999999999999999765 4477889999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKRNKL 218 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~~~~ 218 (250)
++|.||+++|..|++.+.........
T Consensus 150 KTg~Nv~~if~~Ia~~lp~~~~~~~~ 175 (200)
T KOG0092|consen 150 KTGENVNEIFQAIAEKLPCSDPQERQ 175 (200)
T ss_pred ccccCHHHHHHHHHHhccCccccccc
Confidence 99999999999999999887666554
No 3
>KOG0094|consensus
Probab=100.00 E-value=5.6e-38 Score=245.65 Aligned_cols=163 Identities=24% Similarity=0.354 Sum_probs=149.0
Q ss_pred ccccCCccccccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cc
Q psy5810 39 CSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RC 101 (250)
Q Consensus 39 ~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~ 101 (250)
|+.+.......+..|++++|+.+|||||||+ ||+. +.|..+|.+|++ .+++|||+||| ++
T Consensus 10 ~~~~~~~~~~~k~~KlVflGdqsVGKTslIt-Rf~y--d~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrs 86 (221)
T KOG0094|consen 10 CQTMATFGAPLKKYKLVFLGDQSVGKTSLIT-RFMY--DKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRS 86 (221)
T ss_pred HHhccccCccceEEEEEEEccCccchHHHHH-HHHH--hhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhh
Confidence 4455555667777889999999999999999 8999 888888888887 68899999998 89
Q ss_pred cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH
Q psy5810 102 LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY 181 (250)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 181 (250)
+.+.|++ +++++|+|||++|..||++..+|++++...++..++-++|||||.||.+.|+++.+++...|+
T Consensus 87 lipsY~R----------ds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAk 156 (221)
T KOG0094|consen 87 LIPSYIR----------DSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAK 156 (221)
T ss_pred hhhhhcc----------CCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHH
Confidence 9999999 999999999999999999999999999998877789999999999999999999999999999
Q ss_pred HhCCeEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 182 AWGVKFVETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 182 ~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
+++..|+|+||+.|+||.++|..++..+.....
T Consensus 157 el~a~f~etsak~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 157 ELNAEFIETSAKAGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred HhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence 999999999999999999999998888776544
No 4
>KOG0078|consensus
Probab=100.00 E-value=5.1e-37 Score=244.18 Aligned_cols=155 Identities=25% Similarity=0.395 Sum_probs=139.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+++|++|||||+|+. +|.. +.|..++..+++ .+++|||+||+ +.++..||+
T Consensus 11 ~~~kvlliGDs~vGKt~~l~-rf~d--~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr---- 83 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLL-RFSD--DSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR---- 83 (207)
T ss_pred eEEEEEEECCCCCchhHhhh-hhhh--ccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh----
Confidence 45789999999999999997 8998 666666666655 67899999998 788899999
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
+|+++++|||+++..||+++..|++.+.++ ..+++|++|||||+|+...|+|+.+.++++|.++|++|+|+||
T Consensus 84 ------gA~gi~LvyDitne~Sfeni~~W~~~I~e~-a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSA 156 (207)
T KOG0078|consen 84 ------GAMGILLVYDITNEKSFENIRNWIKNIDEH-ASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSA 156 (207)
T ss_pred ------hcCeeEEEEEccchHHHHHHHHHHHHHHhh-CCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccc
Confidence 999999999999999999999999999776 4558999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKRNKL 218 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~~~~ 218 (250)
++|.||.+.|..|++.+..+......
T Consensus 157 k~~~NI~eaF~~La~~i~~k~~~~~~ 182 (207)
T KOG0078|consen 157 KTNFNIEEAFLSLARDILQKLEDAEL 182 (207)
T ss_pred cCCCCHHHHHHHHHHHHHhhcchhhh
Confidence 99999999999999999986555433
No 5
>KOG0098|consensus
Probab=100.00 E-value=9.1e-37 Score=237.08 Aligned_cols=155 Identities=22% Similarity=0.324 Sum_probs=142.3
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+|++++|+.|||||+|+. ||++ ..|.+.+..|++ +++||||+||+ ++++..||+
T Consensus 5 ~~fKyIiiGd~gVGKSclll-rf~~--krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr---- 77 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLL-RFTD--KRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYR---- 77 (216)
T ss_pred ceEEEEEECCCCccHHHHHH-HHhc--cCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhc----
Confidence 45789999999999999997 8999 788877777765 78899999998 789999999
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
+|.+++||||+++++||+.+..|+.++.++ ..+++.++|+|||+||+..|.|+.+|+++||+++|+.|+|+||
T Consensus 78 ------~a~GalLVydit~r~sF~hL~~wL~D~rq~-~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSa 150 (216)
T KOG0098|consen 78 ------GAAGALLVYDITRRESFNHLTSWLEDARQH-SNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSA 150 (216)
T ss_pred ------cCcceEEEEEccchhhHHHHHHHHHHHHHh-cCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhh
Confidence 999999999999999999999999999776 4689999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKRNKL 218 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~~~~ 218 (250)
++++||+|.|......++...+..-.
T Consensus 151 kt~~~VEEaF~nta~~Iy~~~q~g~~ 176 (216)
T KOG0098|consen 151 KTAENVEEAFINTAKEIYRKIQDGVF 176 (216)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999987666544
No 6
>KOG0080|consensus
Probab=100.00 E-value=1.1e-35 Score=225.64 Aligned_cols=153 Identities=22% Similarity=0.203 Sum_probs=138.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
-.+||++||++|||||||+- +|.. ..|.+....+++ ++-||||+||+ +.+++.||+
T Consensus 10 ~t~KiLlIGeSGVGKSSLll-rFv~--~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyR---- 82 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLL-RFVS--NTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYR---- 82 (209)
T ss_pred eeEEEEEEccCCccHHHHHH-HHHh--cccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhc----
Confidence 35789999999999999996 8998 666655555444 66789999998 899999999
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
+|.++|+|||++.+++|..+..|+.++..+...+++..++||||+|.+++|.|+.+++.+||+++++.|+|+||
T Consensus 83 ------gaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SA 156 (209)
T KOG0080|consen 83 ------GAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSA 156 (209)
T ss_pred ------cCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcch
Confidence 99999999999999999999999999998888888999999999999888999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
++.+|++..|++|+.+|.+.+.-
T Consensus 157 kt~~~V~~~FeelveKIi~tp~l 179 (209)
T KOG0080|consen 157 KTRENVQCCFEELVEKIIETPSL 179 (209)
T ss_pred hhhccHHHHHHHHHHHHhcCcch
Confidence 99999999999999999876544
No 7
>KOG0394|consensus
Probab=100.00 E-value=2e-34 Score=223.66 Aligned_cols=155 Identities=23% Similarity=0.305 Sum_probs=137.2
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQ 110 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~ 110 (250)
.-..+||+++|++|||||||++ +|++ ..|...|..+++ .++||||+||+ +++.-.+|+
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn-~yv~--~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYR-- 80 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMN-QYVN--KKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYR-- 80 (210)
T ss_pred cccceEEEEeCCCCccHHHHHH-HHHH--HHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceec--
Confidence 4566899999999999999999 8998 777777776665 67899999998 788999999
Q ss_pred cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCC---CCcEEEEeeCCCccC--CCccCHHHHHHHHHHhC-
Q psy5810 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIG---EKAVILVANKADLER--RRQVTHSDGKKLAYAWG- 184 (250)
Q Consensus 111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~---~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~~- 184 (250)
+||++++|||++++.||+.+..|.+++..+.... .-|+||+|||+|+++ .|+|+...++.||...|
T Consensus 81 --------gaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn 152 (210)
T KOG0394|consen 81 --------GADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN 152 (210)
T ss_pred --------CCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC
Confidence 9999999999999999999999999998775533 479999999999965 38999999999998875
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 185 VKFVETSVGLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 185 ~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
+||+|+|||++.||.+.|..+++.++.....
T Consensus 153 ipyfEtSAK~~~NV~~AFe~ia~~aL~~E~~ 183 (210)
T KOG0394|consen 153 IPYFETSAKEATNVDEAFEEIARRALANEDR 183 (210)
T ss_pred ceeEEecccccccHHHHHHHHHHHHHhccch
Confidence 8999999999999999999999988876543
No 8
>KOG0079|consensus
Probab=100.00 E-value=3.5e-35 Score=220.08 Aligned_cols=150 Identities=21% Similarity=0.313 Sum_probs=135.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+|.+|||++|||||+|+. +|.+ +.|...|..+++ +++||||+||| +.++..||+
T Consensus 9 fkllIigDsgVGKssLl~-rF~d--dtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyr------ 79 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLL-RFAD--DTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYR------ 79 (198)
T ss_pred HHHHeecCCcccHHHHHH-HHhh--cccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHcc------
Confidence 569999999999999996 8988 677777776665 78899999998 788899999
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
+.+++++|||++|.+||.++..|++++... .+.+|-+|||||+|+++.+.|..++++.||...|+.++|+||+.
T Consensus 80 ----gthgv~vVYDVTn~ESF~Nv~rWLeei~~n--cdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe 153 (198)
T KOG0079|consen 80 ----GTHGVIVVYDVTNGESFNNVKRWLEEIRNN--CDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKE 153 (198)
T ss_pred ----CCceEEEEEECcchhhhHhHHHHHHHHHhc--CccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhh
Confidence 999999999999999999999999999654 46899999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhh
Q psy5810 195 VYKTDELLVGIARQAGLNKKRN 216 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~~~ 216 (250)
+.|+++.|.-|.++..+.....
T Consensus 154 ~~NvE~mF~cit~qvl~~k~r~ 175 (198)
T KOG0079|consen 154 NENVEAMFHCITKQVLQAKLRE 175 (198)
T ss_pred cccchHHHHHHHHHHHHHHHhh
Confidence 9999999999999888766333
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.6e-34 Score=230.99 Aligned_cols=151 Identities=18% Similarity=0.190 Sum_probs=129.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+++|+.|||||||+. +|.+ ..|.+.+.++++ .+++|||+|++ ..+++.+++
T Consensus 5 ~~~KivviG~~~vGKTsll~-~~~~--~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~---- 77 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILA-SLQD--GSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSR---- 77 (189)
T ss_pred ceeEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc----
Confidence 35889999999999999997 8887 444443333221 56789999987 566777888
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++|+|||+++++||+++..|+.++.+. .+++|++|||||.|+.+.+.++.++++.+++.++++|+||||
T Consensus 78 ------~ad~illVfD~t~~~Sf~~~~~w~~~i~~~--~~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SA 149 (189)
T cd04121 78 ------GAQGIILVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSP 149 (189)
T ss_pred ------CCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecC
Confidence 999999999999999999999999999664 368999999999999888889999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
++|.||+++|.++++.+...+..
T Consensus 150 k~g~~V~~~F~~l~~~i~~~~~~ 172 (189)
T cd04121 150 LCNFNITESFTELARIVLMRHGR 172 (189)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999888755443
No 10
>KOG0091|consensus
Probab=100.00 E-value=7.6e-34 Score=216.25 Aligned_cols=152 Identities=25% Similarity=0.307 Sum_probs=136.4
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee----------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF----------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~----------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
.+++++||++-||||||+. +|.. +.|..--+|+++ ++++|||+||+ ++++..||+
T Consensus 8 qfrlivigdstvgkssll~-~ft~--gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyr---- 80 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLR-YFTE--GKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYR---- 80 (213)
T ss_pred EEEEEEEcCCcccHHHHHH-HHhc--CcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhh----
Confidence 3569999999999999996 8888 666665566665 88999999998 899999999
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCC-CCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++-++++|||++|++||+.+..|+++...+...+ .+.+.|||+|+||...|+|+.++++.+++.+|+.|+|+|
T Consensus 81 ------nsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETS 154 (213)
T KOG0091|consen 81 ------NSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETS 154 (213)
T ss_pred ------cccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEec
Confidence 9999999999999999999999999987665534 455899999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
|++|.|+++.|..|++.+.....+
T Consensus 155 ak~g~NVeEAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 155 AKNGCNVEEAFDMLAQEIFQAIQQ 178 (213)
T ss_pred ccCCCcHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999877665
No 11
>KOG0087|consensus
Probab=100.00 E-value=2.5e-33 Score=222.29 Aligned_cols=158 Identities=24% Similarity=0.283 Sum_probs=138.9
Q ss_pred ccccE-EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccc
Q psy5810 47 QTYHH-VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFC 108 (250)
Q Consensus 47 ~~~~~-~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~ 108 (250)
..|++ +||++||++|||||-|+. ||.. +.|...--+|++ +.+||||+||| +.++..||+
T Consensus 9 ~~~dylFKiVliGDS~VGKsnLls-Rftr--nEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 9 EEYDYLFKIVLIGDSAVGKSNLLS-RFTR--NEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred cccceEEEEEEeCCCccchhHHHH-Hhcc--cccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhc
Confidence 46655 569999999999999997 8888 566544444443 67899999998 788999999
Q ss_pred cccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEE
Q psy5810 109 SQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFV 188 (250)
Q Consensus 109 ~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 188 (250)
+|.++++|||+++..+|+++..|+.++..+ .+++++++|||||+||...|.|..+++..+++..++.++
T Consensus 86 ----------gAvGAllVYDITr~~Tfenv~rWL~ELRdh-ad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~ 154 (222)
T KOG0087|consen 86 ----------GAVGALLVYDITRRQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFL 154 (222)
T ss_pred ----------ccceeEEEEechhHHHHHHHHHHHHHHHhc-CCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEE
Confidence 999999999999999999999999999765 567999999999999999999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGLNKKRNKL 218 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~~~~~~~~ 218 (250)
|+||+++.|+++.|..++..|.........
T Consensus 155 EtSAl~~tNVe~aF~~~l~~I~~~vs~k~~ 184 (222)
T KOG0087|consen 155 ETSALDATNVEKAFERVLTEIYKIVSKKQL 184 (222)
T ss_pred EecccccccHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998876555443
No 12
>KOG0093|consensus
Probab=100.00 E-value=1.4e-33 Score=211.26 Aligned_cols=152 Identities=19% Similarity=0.300 Sum_probs=133.1
Q ss_pred EEEEEEcCCCCchhhhchhhhccc--cccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~ 116 (250)
.|++|+|++.||||||+. ++++. +..|..|.|..+. ++++|||+||| +.++..||+
T Consensus 22 fKlliiGnssvGKTSfl~-ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR-------- 92 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLF-RYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR-------- 92 (193)
T ss_pred eeEEEEccCCccchhhhH-HhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh--------
Confidence 479999999999999995 89983 2334455554443 78899999998 678888999
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
+|+++|++||++|.+||+.++.|.-.|.-+ .-.++|+|+||||||++++|.++.+.++.+++++|+.|+|+||+.+.
T Consensus 93 --gamgfiLmyDitNeeSf~svqdw~tqIkty-sw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Ni 169 (193)
T KOG0093|consen 93 --GAMGFILMYDITNEESFNSVQDWITQIKTY-SWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENI 169 (193)
T ss_pred --ccceEEEEEecCCHHHHHHHHHHHHHheee-eccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccc
Confidence 999999999999999999999999998554 44689999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhhhh
Q psy5810 197 KTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~~~~ 215 (250)
|++++|+.++..|.++...
T Consensus 170 nVk~~Fe~lv~~Ic~kmse 188 (193)
T KOG0093|consen 170 NVKQVFERLVDIICDKMSE 188 (193)
T ss_pred cHHHHHHHHHHHHHHHhhh
Confidence 9999999999888765443
No 13
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=5.7e-33 Score=222.68 Aligned_cols=145 Identities=21% Similarity=0.376 Sum_probs=125.6
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||+. +|.. +.|...+.++++ ++++|||+|++ +.+.+.+++
T Consensus 2 ~kivv~G~~~vGKTsli~-~~~~--~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~------- 71 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLI-CYTS--NKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYR------- 71 (176)
T ss_pred eEEEEECCCCCcHHHHHH-HHhc--CCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcC-------
Confidence 689999999999999997 8888 566665666653 56799999987 567788888
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccCCC----------ccCHHHHHHHHHHhC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERRR----------QVTHSDGKKLAYAWG 184 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~----------~v~~~~~~~~~~~~~ 184 (250)
++|++|+|||+++++||+++ ..|+.++.+.. +++|++|||||+|+.+.+ .++.+++.++++.++
T Consensus 72 ---~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~ 146 (176)
T cd04133 72 ---GADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG 146 (176)
T ss_pred ---CCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC
Confidence 99999999999999999998 68999996653 579999999999996543 589999999999999
Q ss_pred C-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 185 V-KFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 185 ~-~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
+ +|+||||++|.||+++|+.+++.+.+
T Consensus 147 ~~~~~E~SAk~~~nV~~~F~~~~~~~~~ 174 (176)
T cd04133 147 AAAYIECSSKTQQNVKAVFDAAIKVVLQ 174 (176)
T ss_pred CCEEEECCCCcccCHHHHHHHHHHHHhc
Confidence 8 59999999999999999999987643
No 14
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=6.9e-33 Score=223.40 Aligned_cols=146 Identities=18% Similarity=0.289 Sum_probs=125.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
..+||+++|++|||||||+. +|.. ..|.+.+.|+++ .+++|||+|++ ..+++.+|+
T Consensus 4 ~~~KivvvGd~~vGKTsli~-~~~~--~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~----- 75 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLH-VFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP----- 75 (182)
T ss_pred ceEEEEEECCCCCCHHHHHH-HHHh--CCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcC-----
Confidence 35679999999999999997 8888 566666665554 57789999986 567788888
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHHH
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKLA 180 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~ 180 (250)
++|++|+|||++++.||+++ ..|+.++.+.. ++.|++|||||+|+.+ .+.++.+++.++|
T Consensus 76 -----~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a 148 (182)
T cd04172 76 -----DSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMA 148 (182)
T ss_pred -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHH
Confidence 99999999999999999997 79999997653 6799999999999853 3569999999999
Q ss_pred HHhCC-eEEEEecCCCCC-HHHHHHHHHHHHH
Q psy5810 181 YAWGV-KFVETSVGLVYK-TDELLVGIARQAG 210 (250)
Q Consensus 181 ~~~~~-~~~evSa~~~~~-I~~lf~~l~~~i~ 210 (250)
+.+++ +|+||||++|.| |+++|..+++.++
T Consensus 149 ~~~~~~~~~E~SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 149 KQIGAATYIECSALQSENSVRDIFHVATLACV 180 (182)
T ss_pred HHcCCCEEEECCcCCCCCCHHHHHHHHHHHHh
Confidence 99996 899999999998 9999999998644
No 15
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=9.9e-33 Score=229.11 Aligned_cols=187 Identities=28% Similarity=0.433 Sum_probs=142.9
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccccc-ccccCce---------------eEEEEEeCCCCccccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDV---------------FFIVYSDTNHTQRCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~---------------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ +|..+ .+. ..+.++. ..+.+|||+|++..+...++.
T Consensus 1 ~KI~lvG~~gvGKTsLi~-~~~~~--~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~~------- 70 (221)
T cd04148 1 YRVVMLGSPGVGKSSLAS-QFTSG--EYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMWTEDSCMQ------- 70 (221)
T ss_pred CEEEEECCCCCcHHHHHH-HHhcC--CcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcchHHHhHHhh-------
Confidence 379999999999999998 78652 322 2222221 157789999998322222221
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
+++|++++|||++++.||+.+..|+..+.+.....++|+++|+||+|+.+.+.++.+++.+++..++++|+|+||+++
T Consensus 71 --~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~ 148 (221)
T cd04148 71 --YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQ 148 (221)
T ss_pred --cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence 058999999999999999999999999877654568999999999999877888888899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhHH------------HHHhhhhhhhhhhhhccC------CcCcCcccccccC
Q psy5810 196 YKTDELLVGIARQAGLNKKRNKLL------------AKKQKKMASYINNIKQFK------WFSKVSCENLLVL 250 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 250 (250)
.||+++|+++++.+.......... ....++++.++.++..++ +.+++||+||+||
T Consensus 149 ~gv~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (221)
T cd04148 149 HNVDELLEGIVRQIRLRRDSKEKNERRSRRAYRGRRESLTSKAKRFLGKLVAKNNKGMAFKSKSKSCHDLSVL 221 (221)
T ss_pred CCHHHHHHHHHHHHHhhhccccccCccccccccCccchHHHHHHHHHHHHhccccchhhhhhccCCccccccC
Confidence 999999999999886433221111 111157777888887763 3578999999998
No 16
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.1e-32 Score=225.61 Aligned_cols=146 Identities=20% Similarity=0.327 Sum_probs=126.6
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
.|+++|+.|||||||+. +|.. +.|...+.++++ .+++|||+|++ +.++..|++
T Consensus 2 ~vvvlG~~gVGKTSli~-r~~~--~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~------- 71 (202)
T cd04120 2 QVIIIGSRGVGKTSLMR-RFTD--DTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR------- 71 (202)
T ss_pred EEEEECcCCCCHHHHHH-HHHh--CCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhc-------
Confidence 59999999999999997 8887 556555544442 56789999997 567888888
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-CCeEEEEecCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETSVGL 194 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~evSa~~ 194 (250)
++|++|+|||+++++||+++..|+..+.+. ...++|++|||||+|+...+.++.+++.++++.. ++.|+||||++
T Consensus 72 ---~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~-~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAkt 147 (202)
T cd04120 72 ---SAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKD 147 (202)
T ss_pred ---CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCC
Confidence 999999999999999999999999987654 3467999999999999878899999999999885 78999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy5810 195 VYKTDELLVGIARQAGLN 212 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~ 212 (250)
|.||+++|.++++.+...
T Consensus 148 g~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 148 NFNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999887654
No 17
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=9.4e-33 Score=229.91 Aligned_cols=152 Identities=15% Similarity=0.241 Sum_probs=129.8
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
...+||+++|++|||||||+. +|.. ..|..++.++++ .+++|||+|++ +.+++.+|+
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~-r~~~--~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~---- 83 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQ-VLAK--DCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYS---- 83 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHH-HHhc--CCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcC----
Confidence 356789999999999999997 8888 566666666653 57799999987 567788888
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHH
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKL 179 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~ 179 (250)
+||++|+|||+++++||+.+ ..|+.++.+.. ++.|++|||||+|+.+ .+.|+.++++++
T Consensus 84 ------~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~ 155 (232)
T cd04174 84 ------DSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAL 155 (232)
T ss_pred ------CCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHH
Confidence 99999999999999999985 79999997643 5789999999999964 367999999999
Q ss_pred HHHhCC-eEEEEecCCCC-CHHHHHHHHHHHHHhhhhh
Q psy5810 180 AYAWGV-KFVETSVGLVY-KTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 180 ~~~~~~-~~~evSa~~~~-~I~~lf~~l~~~i~~~~~~ 215 (250)
|+.+++ .|+||||++|. ||+++|..++..+.+....
T Consensus 156 a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~~~~~ 193 (232)
T cd04174 156 AKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLNKLSP 193 (232)
T ss_pred HHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHHhccc
Confidence 999998 69999999998 8999999999988765333
No 18
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=1.6e-32 Score=219.42 Aligned_cols=149 Identities=26% Similarity=0.382 Sum_probs=127.9
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
.+||+++|++|||||||++ +|.. ..|...+.++++ .+.+|||+|++ ..+++.+++
T Consensus 2 ~~ki~vvG~~~vGKTsL~~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~------ 72 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTM-QFIS--HSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMR------ 72 (172)
T ss_pred ceEEEEECCCCCcHHHHHH-HHHh--CCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhh------
Confidence 3679999999999999997 7887 455444433332 56789999986 567777787
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++|+|||++++.||+.+..|...+.+.....++|+++||||+|+.+.+.++.+++.++++.++++|+||||++
T Consensus 73 ----~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~ 148 (172)
T cd04141 73 ----CGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAAL 148 (172)
T ss_pred ----cCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCC
Confidence 8999999999999999999999988887655556899999999999987788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy5810 195 VYKTDELLVGIARQAGLN 212 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~ 212 (250)
|.||+++|++|++.+.+.
T Consensus 149 ~~~v~~~f~~l~~~~~~~ 166 (172)
T cd04141 149 RHYIDDAFHGLVREIRRK 166 (172)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999887754
No 19
>KOG0088|consensus
Probab=100.00 E-value=2.5e-33 Score=212.45 Aligned_cols=154 Identities=19% Similarity=0.257 Sum_probs=134.2
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQ 110 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~ 110 (250)
..-.+|++++|..-||||||+- ||+. ..|....-.++ ..+.||||+||+ ..+.|.||+
T Consensus 10 ~s~~FK~VLLGEGCVGKtSLVL-Ry~E--nkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYR-- 84 (218)
T KOG0088|consen 10 KSFKFKIVLLGEGCVGKTSLVL-RYVE--NKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYR-- 84 (218)
T ss_pred CceeeEEEEEcCCccchhHHHH-HHHH--hhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEe--
Confidence 3344889999999999999997 8888 55543222221 267899999998 789999999
Q ss_pred cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET 190 (250)
Q Consensus 111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev 190 (250)
+++++++|||++|++||+.+++|..++.+. ....+.+++||||+||+++|.|+.++++.+++..|..|+|+
T Consensus 85 --------gSnGalLVyDITDrdSFqKVKnWV~Elr~m-lGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eT 155 (218)
T KOG0088|consen 85 --------GSNGALLVYDITDRDSFQKVKNWVLELRTM-LGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMET 155 (218)
T ss_pred --------CCCceEEEEeccchHHHHHHHHHHHHHHHH-hCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheec
Confidence 999999999999999999999999999776 45778899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 191 SVGLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
||+.+.||.++|..|...+++....
T Consensus 156 SAk~N~Gi~elFe~Lt~~MiE~~s~ 180 (218)
T KOG0088|consen 156 SAKDNVGISELFESLTAKMIEHSSQ 180 (218)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999988776533
No 20
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=2.3e-32 Score=219.72 Aligned_cols=144 Identities=19% Similarity=0.276 Sum_probs=124.0
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ +|.. ..|..++.++++ .+.+|||+|++ ..+.+.+++
T Consensus 2 ~Kiv~vG~~~vGKTsli~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~------- 71 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQ-VFAK--DCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYP------- 71 (178)
T ss_pred eEEEEECCCCCCHHHHHH-HHHh--CcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcC-------
Confidence 689999999999999997 8888 556666655543 56789999986 567788888
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHHHHH
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKLAYA 182 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~ 182 (250)
++|++|+|||+++++||+++ ..|+.++.+.. +++|++|||||+|+.+ .+.++.+++.+++++
T Consensus 72 ---~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~ 146 (178)
T cd04131 72 ---DSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQ 146 (178)
T ss_pred ---CCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHH
Confidence 99999999999999999996 78999997653 6899999999999953 346999999999999
Q ss_pred hCC-eEEEEecCCCCC-HHHHHHHHHHHHH
Q psy5810 183 WGV-KFVETSVGLVYK-TDELLVGIARQAG 210 (250)
Q Consensus 183 ~~~-~~~evSa~~~~~-I~~lf~~l~~~i~ 210 (250)
+++ +|+||||++|+| |+++|..+++..+
T Consensus 147 ~~~~~~~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 147 LGAEIYLECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred hCCCEEEECccCcCCcCHHHHHHHHHHHHh
Confidence 997 799999999995 9999999998544
No 21
>KOG0081|consensus
Probab=100.00 E-value=9e-34 Score=214.95 Aligned_cols=157 Identities=20% Similarity=0.302 Sum_probs=140.3
Q ss_pred cccE-EEEEEEcCCCCchhhhchhhhccc--cccccccccCcee--------------------EEEEEeCCCCc--ccc
Q psy5810 48 TYHH-VFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQTYHPDVF--------------------FIVYSDTNHTQ--RCL 102 (250)
Q Consensus 48 ~~~~-~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~~~~~~~--------------------~i~i~Dt~g~~--~~~ 102 (250)
.|++ +|++.+|++||||||+++ +|.++ ..+|.+|+|.++. .+++|||+||+ +++
T Consensus 5 dydylikfLaLGDSGVGKTs~Ly-~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 5 DYDYLIKFLALGDSGVGKTSFLY-QYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred cHHHHHHHHhhccCCCCceEEEE-EecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 3444 579999999999999998 89885 4456667666653 67899999998 789
Q ss_pred CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH
Q psy5810 103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182 (250)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 182 (250)
+..+|+ +|-+++++||+++..||-++++|+.++..+....+..+|++|||+||++.|+|+.+++.++|.+
T Consensus 84 TTAFfR----------DAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k 153 (219)
T KOG0081|consen 84 TTAFFR----------DAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK 153 (219)
T ss_pred HHHHHH----------hhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH
Confidence 999999 9999999999999999999999999998888888888999999999999999999999999999
Q ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
+|+||+|+||.+|.||++..+.|+..+.+....
T Consensus 154 yglPYfETSA~tg~Nv~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 154 YGLPYFETSACTGTNVEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred hCCCeeeeccccCcCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888776554
No 22
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.4e-32 Score=219.84 Aligned_cols=146 Identities=21% Similarity=0.322 Sum_probs=124.2
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
.+||+++|++|||||||+. +|.. +.|...+.++++ .+.+|||+|++ +.+++.+++
T Consensus 3 ~~ki~~vG~~~vGKTsli~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~------ 73 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLI-CYTT--NAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYP------ 73 (191)
T ss_pred cEEEEEECCCCCCHHHHHH-HHHh--CCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcc------
Confidence 3689999999999999997 8887 555555555553 46789999997 677888888
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHH
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAY 181 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~ 181 (250)
++|++|+|||++++.||+.+. .|+.++.+. .+++|++|||||+|+.+. +.++.+++.++++
T Consensus 74 ----~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~ 147 (191)
T cd01875 74 ----QTNVFIICFSIASPSSYENVRHKWHPEVCHH--CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK 147 (191)
T ss_pred ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence 999999999999999999997 698888653 358999999999999653 3478889999999
Q ss_pred HhC-CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 182 AWG-VKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 182 ~~~-~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
.++ ++|+|+||++|.||+++|.++++.+..
T Consensus 148 ~~~~~~~~e~SAk~g~~v~e~f~~l~~~~~~ 178 (191)
T cd01875 148 QIHAVKYLECSALNQDGVKEVFAEAVRAVLN 178 (191)
T ss_pred HcCCcEEEEeCCCCCCCHHHHHHHHHHHHhc
Confidence 998 589999999999999999999987754
No 23
>KOG0086|consensus
Probab=100.00 E-value=1.2e-32 Score=207.60 Aligned_cols=160 Identities=23% Similarity=0.262 Sum_probs=139.9
Q ss_pred cccccE-EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcc
Q psy5810 46 VQTYHH-VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPF 107 (250)
Q Consensus 46 ~~~~~~-~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~ 107 (250)
..+|++ +|++++|+.|.|||+|++ +|+. .+|.+....+++ +++||||+||+ ++.+..||
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh-~Fie--~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYY 79 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLH-QFIE--NKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYY 79 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHH-HHHH--hhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHh
Confidence 456766 579999999999999997 8888 455444333333 78999999998 78889999
Q ss_pred ccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeE
Q psy5810 108 CSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKF 187 (250)
Q Consensus 108 ~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 187 (250)
+ +|-++++|||+++++||+.+.+|+.++... ..+++-++|+|||.||.++|+|+..++..||++..+.+
T Consensus 80 R----------GAAGAlLVYD~TsrdsfnaLtnWL~DaR~l-As~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~f 148 (214)
T KOG0086|consen 80 R----------GAAGALLVYDITSRDSFNALTNWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMF 148 (214)
T ss_pred c----------cccceEEEEeccchhhHHHHHHHHHHHHhh-CCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceee
Confidence 9 999999999999999999999999998654 56788999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810 188 VETSVGLVYKTDELLVGIARQAGLNKKRNKLL 219 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~ 219 (250)
.|+||++|+|++|.|-..++.|+.+.......
T Consensus 149 lETSa~TGeNVEEaFl~c~~tIl~kIE~GElD 180 (214)
T KOG0086|consen 149 LETSALTGENVEEAFLKCARTILNKIESGELD 180 (214)
T ss_pred eeecccccccHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999998877665443
No 24
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.1e-31 Score=218.59 Aligned_cols=146 Identities=18% Similarity=0.245 Sum_probs=119.7
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc---cccccccccCce------------------------eEEEEEeCCCCccccC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ---VENFVQTYHPDV------------------------FFIVYSDTNHTQRCLT 103 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~---~~~~~~~~~~~~------------------------~~i~i~Dt~g~~~~~~ 103 (250)
.+||+++|++|||||||+.+++.+. ...|.+.+.|++ ..+.+|||+|+++.+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~~~ 81 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDKDR 81 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhhhh
Confidence 3689999999999999996455542 112222222222 2567999999987677
Q ss_pred CCccccccccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC---------------
Q psy5810 104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER--------------- 167 (250)
Q Consensus 104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~--------------- 167 (250)
..+|+ ++|++|+|||++++.||+.+. .|+.++.+. .+++|++|||||+|+..
T Consensus 82 ~~~~~----------~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~--~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~ 149 (195)
T cd01873 82 RFAYG----------RSDVVLLCFSIASPNSLRNVKTMWYPEIRHF--CPRVPVILVGCKLDLRYADLDEVNRARRPLAR 149 (195)
T ss_pred cccCC----------CCCEEEEEEECCChhHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhccccccchhhhccccccc
Confidence 77888 999999999999999999997 599988654 25789999999999853
Q ss_pred ----CCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 168 ----RRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 168 ----~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
.+.|+.++++++|++++++|+||||++|.||+++|..+++.
T Consensus 150 ~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 150 PIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred ccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 47899999999999999999999999999999999999864
No 25
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.98 E-value=1.2e-31 Score=219.48 Aligned_cols=155 Identities=17% Similarity=0.154 Sum_probs=128.0
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee----------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF----------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~----------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
+||+++|++|||||||++ +|.+ ..+...+.++++ .+.+|||+|++ +.++..+++
T Consensus 1 ~KivivG~~~vGKTsli~-~l~~--~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~----- 72 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIK-RYVH--GIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYR----- 72 (201)
T ss_pred CEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhC-----
Confidence 479999999999999998 8887 344333333321 46789999986 556677777
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh---CCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEE
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK---YIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVE 189 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e 189 (250)
++|++|+|||+++++||+.+..|+.++.... ...++|++|||||+|+.+.+.++.+++.++++..+ ..|++
T Consensus 73 -----~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e 147 (201)
T cd04107 73 -----GAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFE 147 (201)
T ss_pred -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEE
Confidence 8999999999999999999999999886432 23678999999999997667888999999999998 68999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810 190 TSVGLVYKTDELLVGIARQAGLNKKRNKLL 219 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~~~~~~~~~~ 219 (250)
+||++|.||+++|++|++.+.+.......+
T Consensus 148 ~Sak~~~~v~e~f~~l~~~l~~~~~~~~~~ 177 (201)
T cd04107 148 TSAKEGINIEEAMRFLVKNILANDKNLQQA 177 (201)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhchhhHhh
Confidence 999999999999999999988765544444
No 26
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.98 E-value=8.4e-32 Score=218.46 Aligned_cols=151 Identities=24% Similarity=0.393 Sum_probs=126.9
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~ 116 (250)
||+++|++|||||||++ +|+. +.|...+.++++ .+++|||+|++ ..++..+++
T Consensus 1 ki~ivG~~~vGKTsli~-~l~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~-------- 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTI-QLCL--NHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIR-------- 69 (190)
T ss_pred CEEEECCCCCCHHHHHH-HHHh--CCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHH--------
Confidence 58999999999999998 8887 455554444432 47789999986 455666777
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++|+|||+++++||+.+..|+..+..... ..++|+++||||+|+...+.++..++.++++.++++|+++||++
T Consensus 70 --~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~ 147 (190)
T cd04144 70 --EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKT 147 (190)
T ss_pred --hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCC
Confidence 89999999999999999999999998876543 35789999999999977788888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhh
Q psy5810 195 VYKTDELLVGIARQAGLNKKRN 216 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~~~ 216 (250)
|.|++++|.++++.+...+...
T Consensus 148 ~~~v~~l~~~l~~~l~~~~~~~ 169 (190)
T cd04144 148 NVNVERAFYTLVRALRQQRQGG 169 (190)
T ss_pred CCCHHHHHHHHHHHHHHhhccc
Confidence 9999999999998887555544
No 27
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.98 E-value=2.4e-31 Score=220.07 Aligned_cols=152 Identities=22% Similarity=0.204 Sum_probs=124.9
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccccc---ccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFV---QTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~---~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+||+|+|++|||||||++ +|.. ..|. ++++..+. .+.+|||+|++ +.++..+++ +
T Consensus 1 ~KIvivG~~~vGKTSLi~-r~~~--~~f~~~~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~----------~ 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLH-RYME--RRFKDTVSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCR----------G 67 (220)
T ss_pred CEEEEECCCCCcHHHHHH-HHhc--CCCCCCCCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhc----------c
Confidence 479999999999999998 7887 3443 33333222 57789999986 456666777 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC-------------------CCccCHHHHHHHH
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER-------------------RRQVTHSDGKKLA 180 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-------------------~~~v~~~~~~~~~ 180 (250)
+|++|+|||+++++||+++..|+..+.+. ...++|++|||||+|+.+ .+.++.+++.+++
T Consensus 68 ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~-~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a 146 (220)
T cd04126 68 AAAVILTYDVSNVQSLEELEDRFLGLTDT-ANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFY 146 (220)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHH
Confidence 99999999999999999999988887654 346789999999999965 6889999999999
Q ss_pred HHhC--------------CeEEEEecCCCCCHHHHHHHHHHHHHhhhhhhh
Q psy5810 181 YAWG--------------VKFVETSVGLVYKTDELLVGIARQAGLNKKRNK 217 (250)
Q Consensus 181 ~~~~--------------~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~ 217 (250)
++.+ ++|+||||++|.||+++|..+++.+........
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~~~~ 197 (220)
T cd04126 147 KRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLILAQR 197 (220)
T ss_pred HHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHHhhh
Confidence 9876 689999999999999999999998875444333
No 28
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.98 E-value=2.7e-31 Score=210.56 Aligned_cols=147 Identities=22% Similarity=0.300 Sum_probs=125.5
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
.+||+++|++|||||||++ +|.. ..|.+.+.++++ .+.+|||+|++ ..++..+++
T Consensus 2 ~~ki~iiG~~~vGKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~----- 73 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLH-QFTE--KKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYR----- 73 (166)
T ss_pred ceEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc-----
Confidence 3789999999999999998 8887 455544443321 56799999986 455666777
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++|++|+|||+++++||+.+..|+..+... ..++.|+++||||+|+.+.+.++.+++.++++..+++|+|+||+
T Consensus 74 -----~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 147 (166)
T cd04122 74 -----GAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAK 147 (166)
T ss_pred -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECC
Confidence 899999999999999999999999988654 34678999999999998888899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy5810 194 LVYKTDELLVGIARQAGL 211 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~ 211 (250)
+|.||.++|.+++..+.+
T Consensus 148 ~~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 148 TGENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987754
No 29
>PTZ00369 Ras-like protein; Provisional
Probab=99.98 E-value=3.2e-31 Score=214.89 Aligned_cols=153 Identities=25% Similarity=0.392 Sum_probs=128.5
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
.+||+++|++|||||||++ +|.+ ..|...+.++.+ .+.+|||+|++ ..++..+++
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~------ 75 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTI-QFIQ--NHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMR------ 75 (189)
T ss_pred ceEEEEECCCCCCHHHHHH-HHhc--CCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhh------
Confidence 3679999999999999998 8887 444444433321 46789999986 556667777
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++++|+.+..|+..+.+.....++|+++||||+|+.+.+.++.+++..+++.++++|+++||++
T Consensus 76 ----~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~ 151 (189)
T PTZ00369 76 ----TGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQ 151 (189)
T ss_pred ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCC
Confidence 8999999999999999999999999987665556899999999999977778888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhh
Q psy5810 195 VYKTDELLVGIARQAGLNKKRN 216 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~~~ 216 (250)
|.||.++|.++++.+.+..+..
T Consensus 152 ~~gi~~~~~~l~~~l~~~~~~~ 173 (189)
T PTZ00369 152 RVNVDEAFYELVREIRKYLKED 173 (189)
T ss_pred CCCHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999887654433
No 30
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.98 E-value=1.4e-31 Score=221.68 Aligned_cols=149 Identities=20% Similarity=0.301 Sum_probs=124.1
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+|+|++|||||||+. +|.. ..|...|.|++. .+.+|||+|++ ..+++.+|+
T Consensus 2 ~KIvvvGd~~vGKTsLi~-~~~~--~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~------- 71 (222)
T cd04173 2 CKIVVVGDAECGKTALLQ-VFAK--DAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYP------- 71 (222)
T ss_pred eEEEEECCCCCCHHHHHH-HHHc--CCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhcc-------
Confidence 689999999999999997 8887 555555555543 56789999986 667788888
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHH
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYA 182 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~ 182 (250)
++|++|+|||+++++||+.+ ..|..++.. ..+++|++|||||+|+... ..++.+++..+++.
T Consensus 72 ---~~d~illvfdis~~~Sf~~i~~~w~~~~~~--~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~ 146 (222)
T cd04173 72 ---DSDAVLICFDISRPETLDSVLKKWQGETQE--FCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQ 146 (222)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHh--hCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHH
Confidence 99999999999999999999 468877644 3468999999999998542 24888999999999
Q ss_pred hCC-eEEEEecCCCCC-HHHHHHHHHHHHHhhhhh
Q psy5810 183 WGV-KFVETSVGLVYK-TDELLVGIARQAGLNKKR 215 (250)
Q Consensus 183 ~~~-~~~evSa~~~~~-I~~lf~~l~~~i~~~~~~ 215 (250)
.++ +|+||||+++.+ |+++|..++.....+...
T Consensus 147 ~~~~~y~E~SAk~~~~~V~~~F~~~~~~~~~~~~~ 181 (222)
T cd04173 147 VGAVSYVECSSRSSERSVRDVFHVATVASLGRGHR 181 (222)
T ss_pred cCCCEEEEcCCCcCCcCHHHHHHHHHHHHHhccCC
Confidence 996 899999999985 999999999987765443
No 31
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.97 E-value=4.9e-31 Score=211.36 Aligned_cols=143 Identities=24% Similarity=0.388 Sum_probs=121.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ +|.. +.|.+.+.|+++ .+.+|||+|++ ..++..+++
T Consensus 2 ~ki~vvG~~~vGKTsl~~-~~~~--~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------- 71 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLI-SYTT--NKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYP------- 71 (175)
T ss_pred eEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcc-------
Confidence 689999999999999998 8887 556555555553 46689999987 456777888
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHH
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYA 182 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~ 182 (250)
++|++|+|||+++++||+.+. .|+.++.+. .+++|++|||||+|+.+. +.++.+++.+++++
T Consensus 72 ---~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~ 146 (175)
T cd01874 72 ---QTDVFLVCFSVVSPSSFENVKEKWVPEITHH--CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARD 146 (175)
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHH
Confidence 899999999999999999997 599888654 357999999999998543 67889999999998
Q ss_pred hC-CeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 183 WG-VKFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 183 ~~-~~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
.+ +.|+|+||++|.|++++|+.+++.+
T Consensus 147 ~~~~~~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 147 LKAVKYVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred hCCcEEEEecCCCCCCHHHHHHHHHHHh
Confidence 87 6899999999999999999999754
No 32
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.97 E-value=5.2e-31 Score=211.38 Aligned_cols=149 Identities=21% Similarity=0.340 Sum_probs=126.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCce-------------------------eEEEEEeCCCCc--ccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-------------------------FFIVYSDTNHTQ--RCL 102 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-------------------------~~i~i~Dt~g~~--~~~ 102 (250)
..+||+++|++|||||||++ +|.++ .|.+.+.+++ ..+.+|||+|++ ..+
T Consensus 3 ~~~ki~ivG~~~vGKTsli~-~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 79 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLY-QYTDN--KFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSL 79 (180)
T ss_pred ceEEEEEECCCCCCHHHHHH-HHhcC--CCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHH
Confidence 34899999999999999998 78773 3333222221 246799999987 456
Q ss_pred CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH
Q psy5810 103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182 (250)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 182 (250)
+..+++ ++|++++|||+++++||+++..|+.++.......+.|+++||||+|+.+.+.++.+++.++++.
T Consensus 80 ~~~~~~----------~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~ 149 (180)
T cd04127 80 TTAFFR----------DAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK 149 (180)
T ss_pred HHHHhC----------CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH
Confidence 677777 8999999999999999999999999997665556889999999999987788899999999999
Q ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 183 WGVKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
++++++++||++|.|++++|++|++.+.+
T Consensus 150 ~~~~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 150 YGIPYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred cCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999987764
No 33
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.97 E-value=4.8e-31 Score=215.62 Aligned_cols=155 Identities=22% Similarity=0.275 Sum_probs=127.4
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
..+||+|+|++|||||||++ +|.+.. ..+.++.+..+. .+.+|||+|++ ..++..+++
T Consensus 5 ~~~kivvvG~~~vGKTsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~------ 77 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLL-RFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYR------ 77 (199)
T ss_pred ceeEEEEECCCCCCHHHHHH-HHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhC------
Confidence 35789999999999999998 887731 122334332221 56799999986 456666777
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
+++++++|||+++++||+.+..|+..+... ....|++|||||+|+.+.+.++.+++..+++.++++|+++||++
T Consensus 78 ----~a~~iilv~D~~~~~s~~~~~~~~~~i~~~--~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 151 (199)
T cd04110 78 ----GTHGVIVVYDVTNGESFVNVKRWLQEIEQN--CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKE 151 (199)
T ss_pred ----CCcEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCC
Confidence 899999999999999999999999998653 36789999999999987778888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhh
Q psy5810 195 VYKTDELLVGIARQAGLNKKRNK 217 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~~~~ 217 (250)
|.||.++|+++++.+........
T Consensus 152 ~~gi~~lf~~l~~~~~~~~~~~~ 174 (199)
T cd04110 152 NINVEEMFNCITELVLRAKKDNL 174 (199)
T ss_pred CcCHHHHHHHHHHHHHHhhhccC
Confidence 99999999999998876544443
No 34
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=5.7e-31 Score=217.09 Aligned_cols=153 Identities=25% Similarity=0.344 Sum_probs=128.5
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCce----------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV----------------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~----------------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
.+||+|+|++|||||||++ +|.+ ..+...+.+++ ..+++|||+|++ ..++..+++
T Consensus 2 ~~KIvvvG~~~vGKTsLi~-~l~~--~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---- 74 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLK-RFTE--GRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYR---- 74 (211)
T ss_pred ceEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhc----
Confidence 4789999999999999998 7887 33333333322 257799999987 455566777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++++|||+++++||+++..|+.++.+......+|++|||||+|+.+.+.++.+++.++++.++++|+|+||
T Consensus 75 ------~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa 148 (211)
T cd04111 75 ------NSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSA 148 (211)
T ss_pred ------CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeC
Confidence 89999999999999999999999999977655556889999999999877889999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKRN 216 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~~ 216 (250)
++|.||+++|++|++.+.+.....
T Consensus 149 k~g~~v~e~f~~l~~~~~~~~~~~ 172 (211)
T cd04111 149 RTGDNVEEAFELLTQEIYERIKRG 172 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999887664443
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.97 E-value=5.7e-31 Score=207.36 Aligned_cols=145 Identities=28% Similarity=0.453 Sum_probs=123.6
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ ++.. +.|..++.+++. .+.+|||+|++ ..++..+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------- 71 (163)
T cd04136 2 YKVVVLGSGGVGKSALTV-QFVQ--GIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIK------- 71 (163)
T ss_pred eEEEEECCCCCCHHHHHH-HHHh--CCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhh-------
Confidence 579999999999999998 7887 445444444432 46789999986 456667777
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
++|++++|||++++++|+.+..|+..+.+.....++|+++||||+|+.+.+.++.+++..+++.++.+++++||++|
T Consensus 72 ---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd04136 72 ---NGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSK 148 (163)
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCC
Confidence 89999999999999999999999999977655568999999999999777778888888899988999999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQA 209 (250)
Q Consensus 196 ~~I~~lf~~l~~~i 209 (250)
.|+.++|.++++.+
T Consensus 149 ~~v~~l~~~l~~~~ 162 (163)
T cd04136 149 INVDEVFADLVRQI 162 (163)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998754
No 36
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.97 E-value=5.9e-31 Score=207.96 Aligned_cols=146 Identities=29% Similarity=0.460 Sum_probs=125.0
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ +++. +.+.+.+.+++. .+.+|||+|++ ..++..+++
T Consensus 2 ~ki~~~G~~~~GKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------- 71 (164)
T cd04175 2 YKLVVLGSGGVGKSALTV-QFVQ--GIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMK------- 71 (164)
T ss_pred cEEEEECCCCCCHHHHHH-HHHh--CCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHh-------
Confidence 579999999999999998 7876 444444444432 46689999986 566777777
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
++|++++|||++++.+|+.+.+|+..+.......+.|+++||||+|+.+.+.++.+++.++++.++++|+++||++|
T Consensus 72 ---~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (164)
T cd04175 72 ---NGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAK 148 (164)
T ss_pred ---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCC
Confidence 89999999999999999999999999977655678999999999999877788888888999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQAG 210 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~ 210 (250)
.|++++|.++++.+.
T Consensus 149 ~~v~~~~~~l~~~l~ 163 (164)
T cd04175 149 INVNEIFYDLVRQIN 163 (164)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999997653
No 37
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.97 E-value=1.2e-30 Score=215.70 Aligned_cols=148 Identities=20% Similarity=0.212 Sum_probs=125.9
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee----------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF----------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~----------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
+||+++|++|||||||++ +|.+ ..|...+.++++ .+.+|||+|++ ..++..+++
T Consensus 1 ~Ki~ivG~~~vGKSsLi~-~l~~--~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~----- 72 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCR-RFAK--EGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIY----- 72 (215)
T ss_pred CEEEEECcCCCCHHHHHH-HHhc--CCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhh-----
Confidence 479999999999999998 8887 444444444432 56789999986 566677777
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++|++|+|||+++++||+.+..|+..+.+... ..++|+++||||+|+.+.+.++.+++.++++.++++++++|
T Consensus 73 -----~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iS 147 (215)
T cd04109 73 -----GAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVS 147 (215)
T ss_pred -----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEE
Confidence 89999999999999999999999999976543 24578999999999987788999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~ 212 (250)
|++|.||+++|+++++.+...
T Consensus 148 Aktg~gv~~lf~~l~~~l~~~ 168 (215)
T cd04109 148 AKTGDRVNLLFQQLAAELLGV 168 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999988764
No 38
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.97 E-value=1.1e-30 Score=206.37 Aligned_cols=143 Identities=22% Similarity=0.311 Sum_probs=122.8
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ +|.+ ..|.+++.++++ .+++|||+|++ ..++..+++
T Consensus 1 ~ki~vvG~~~~GKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~------ 71 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLC-RFTD--NEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYR------ 71 (161)
T ss_pred CEEEEECcCCCCHHHHHH-HHhc--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhc------
Confidence 379999999999999998 7887 555555555443 46789999986 455666777
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||+++++||+.+..|+.++.+. ...++|+++||||.|+.+.+.++.+++..+++.++++|+|+||++
T Consensus 72 ----~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~-~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 146 (161)
T cd04117 72 ----RAQGIFLVYDISSERSYQHIMKWVSDVDEY-APEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACT 146 (161)
T ss_pred ----CCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 899999999999999999999999998654 345799999999999988788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy5810 195 VYKTDELLVGIARQ 208 (250)
Q Consensus 195 ~~~I~~lf~~l~~~ 208 (250)
|.|++++|.+|++.
T Consensus 147 ~~~v~~~f~~l~~~ 160 (161)
T cd04117 147 NSNIKESFTRLTEL 160 (161)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999864
No 39
>KOG0083|consensus
Probab=99.97 E-value=4.6e-32 Score=200.16 Aligned_cols=149 Identities=26% Similarity=0.403 Sum_probs=133.1
Q ss_pred EEEcCCCCchhhhchhhhccc---cccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810 55 IVHSDTNHTQRCLTSMPFCSQ---VENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 55 ~iiG~~~vGKSsLi~~~~~~~---~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~ 118 (250)
+++|++++|||+|+- ||-++ ...|.+++|.++. ++++|||+||+ ++.+..||+
T Consensus 1 mllgds~~gktclli-r~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyr---------- 69 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLI-RFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYR---------- 69 (192)
T ss_pred CccccCccCceEEEE-EeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhc----------
Confidence 478999999999997 76654 4678888887765 78999999998 788999999
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
+||+++++||++|..||++++.|+.+|.++ ....+.+.++|||+|+..+|.|..++++++++.+++||+|+||++|.|+
T Consensus 70 da~allllydiankasfdn~~~wlsei~ey-~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nv 148 (192)
T KOG0083|consen 70 DADALLLLYDIANKASFDNCQAWLSEIHEY-AKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNV 148 (192)
T ss_pred ccceeeeeeecccchhHHHHHHHHHHHHHH-HHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccH
Confidence 999999999999999999999999999776 3456889999999999888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhh
Q psy5810 199 DELLVGIARQAGLNKKR 215 (250)
Q Consensus 199 ~~lf~~l~~~i~~~~~~ 215 (250)
+-.|..+++.+.+....
T Consensus 149 d~af~~ia~~l~k~~~~ 165 (192)
T KOG0083|consen 149 DLAFLAIAEELKKLKMG 165 (192)
T ss_pred hHHHHHHHHHHHHhccC
Confidence 99999999988765433
No 40
>KOG0095|consensus
Probab=99.97 E-value=2.2e-31 Score=200.09 Aligned_cols=156 Identities=21% Similarity=0.290 Sum_probs=137.7
Q ss_pred cccE-EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccc
Q psy5810 48 TYHH-VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCS 109 (250)
Q Consensus 48 ~~~~-~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~ 109 (250)
.|+. +||+++|+.|||||+|+ |+|.. +-|.+..+.+++ +++||||+||+ ++++..||+
T Consensus 3 dykflfkivlvgnagvgktclv-rrftq--glfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyr- 78 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLV-RRFTQ--GLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYR- 78 (213)
T ss_pred ccceeEEEEEEccCCcCcchhh-hhhhc--cCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhh-
Confidence 4555 57999999999999999 58988 777777777765 78899999998 789999999
Q ss_pred ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810 110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVE 189 (250)
Q Consensus 110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 189 (250)
.|+++|+|||++...||+-+.+|+.+|.++. ...+-.||||||.|+.+.|+++..-+++|++....-|+|
T Consensus 79 ---------sahalilvydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfle 148 (213)
T KOG0095|consen 79 ---------SAHALILVYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLE 148 (213)
T ss_pred ---------hcceEEEEEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhh
Confidence 8999999999999999999999999998773 456778999999999988999999999999998888999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhhhhh
Q psy5810 190 TSVGLVYKTDELLVGIARQAGLNKKRNK 217 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~~~~~~~~ 217 (250)
+||+...|++.+|..++..+........
T Consensus 149 tsakea~nve~lf~~~a~rli~~ar~~d 176 (213)
T KOG0095|consen 149 TSAKEADNVEKLFLDLACRLISEARQND 176 (213)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999988876554443
No 41
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=1.4e-30 Score=205.38 Aligned_cols=141 Identities=14% Similarity=0.255 Sum_probs=116.8
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce-------------eEEEEEeCCCCccccCCCccccccccccccC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-------------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-------------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~ 118 (250)
+||+++|++|||||||+. +|.. ..|.+.+.++. ..+.+|||+|++. ..+++
T Consensus 1 ~ki~vvG~~gvGKTsli~-~~~~--~~f~~~~~~~~~~~~~~i~~~~~~~~l~i~D~~g~~~---~~~~~---------- 64 (158)
T cd04103 1 LKLGIVGNLQSGKSALVH-RYLT--GSYVQLESPEGGRFKKEVLVDGQSHLLLIRDEGGAPD---AQFAS---------- 64 (158)
T ss_pred CEEEEECCCCCcHHHHHH-HHHh--CCCCCCCCCCccceEEEEEECCEEEEEEEEECCCCCc---hhHHh----------
Confidence 479999999999999997 7876 33333332211 1578899999974 24555
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc--CCCccCHHHHHHHHHHh-CCeEEEEecCCC
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE--RRRQVTHSDGKKLAYAW-GVKFVETSVGLV 195 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~evSa~~~ 195 (250)
++|++++|||+++++||+++..|+.++.+.....++|+++||||.|+. ..+.++.+++.++++.. ++.|+||||++|
T Consensus 65 ~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 144 (158)
T cd04103 65 WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYG 144 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCC
Confidence 899999999999999999999999999876555679999999999985 35789999999999876 489999999999
Q ss_pred CCHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQ 208 (250)
Q Consensus 196 ~~I~~lf~~l~~~ 208 (250)
.||+++|..+++.
T Consensus 145 ~~i~~~f~~~~~~ 157 (158)
T cd04103 145 LNVERVFQEAAQK 157 (158)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999864
No 42
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.97 E-value=4e-30 Score=203.71 Aligned_cols=146 Identities=18% Similarity=0.291 Sum_probs=123.2
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ ++.+ ..|...+.++.+ .+++|||+|++ ..++..+++
T Consensus 2 ~ki~i~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~------ 72 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLF-RYAD--DSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYR------ 72 (165)
T ss_pred eEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHcc------
Confidence 689999999999999998 8888 444433333221 57789999986 455666777
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++++|+.+..|+..+.+. ...+.|+++||||+|+.+.+.++.+++.++++.++++++++||++
T Consensus 73 ----~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (165)
T cd01865 73 ----GAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKE 147 (165)
T ss_pred ----CCcEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCC
Confidence 899999999999999999999999998654 345789999999999987778888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy5810 195 VYKTDELLVGIARQAGL 211 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~ 211 (250)
|.|+.++|++++..+..
T Consensus 148 ~~gv~~l~~~l~~~~~~ 164 (165)
T cd01865 148 NINVKQVFERLVDIICD 164 (165)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987653
No 43
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=4.1e-30 Score=208.04 Aligned_cols=151 Identities=17% Similarity=0.240 Sum_probs=125.2
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ +|.+ ..|...+.++++ .+++|||+|++ ..++..+++
T Consensus 1 ~ki~v~G~~~vGKSsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~------ 71 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLK-RFTE--DEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYR------ 71 (188)
T ss_pred CEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHcc------
Confidence 479999999999999998 8887 444332322221 45789999986 445666777
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||+++++||+.+..|+.++.... ..+.|+++||||+|+.+.+.++.+++..+++..+++|+++||++
T Consensus 72 ----~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 146 (188)
T cd04125 72 ----GAHGYLLVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQ 146 (188)
T ss_pred ----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCC
Confidence 8999999999999999999999999987642 34689999999999987788889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhh
Q psy5810 195 VYKTDELLVGIARQAGLNKKRN 216 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~~~ 216 (250)
|.|++++|.+|++.+.......
T Consensus 147 ~~~i~~~f~~l~~~~~~~~~~~ 168 (188)
T cd04125 147 SINVEEAFILLVKLIIKRLEEQ 168 (188)
T ss_pred CCCHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999887544333
No 44
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.97 E-value=2.8e-30 Score=203.78 Aligned_cols=145 Identities=30% Similarity=0.468 Sum_probs=123.6
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ ++.. +.+.+++.+++. .+++|||+|++ ..++..+++
T Consensus 2 ~ki~i~G~~~vGKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------- 71 (163)
T cd04176 2 YKVVVLGSGGVGKSALTV-QFVS--GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK------- 71 (163)
T ss_pred eEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHh-------
Confidence 579999999999999998 7887 455444444421 46789999986 566777777
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
++|++++|||+++++||+++..|+..+.+.....++|+++||||+|+...+.+...++..+++.++++++++||++|
T Consensus 72 ---~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (163)
T cd04176 72 ---NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSK 148 (163)
T ss_pred ---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCC
Confidence 89999999999999999999999999977655578999999999999776778888889999888999999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQA 209 (250)
Q Consensus 196 ~~I~~lf~~l~~~i 209 (250)
.|+.++|.++++.+
T Consensus 149 ~~v~~l~~~l~~~l 162 (163)
T cd04176 149 TMVNELFAEIVRQM 162 (163)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998754
No 45
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.97 E-value=4.1e-30 Score=205.84 Aligned_cols=142 Identities=23% Similarity=0.374 Sum_probs=119.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||+. +|.. ..|...+.+++. .+.+|||+|++ ..+++.+++
T Consensus 2 ~ki~iiG~~~vGKSsli~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------- 71 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLI-SYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP------- 71 (174)
T ss_pred eEEEEECCCCCCHHHHHH-HHhc--CCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcC-------
Confidence 689999999999999997 8887 455555544432 56789999986 567777887
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHH
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYA 182 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~ 182 (250)
++|++|+|||+++++||+++. .|+..+... .+++|++|||||+|+.+. +.++.+++.+++++
T Consensus 72 ---~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 146 (174)
T cd01871 72 ---QTDVFLICFSLVSPASFENVRAKWYPEVRHH--CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE 146 (174)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 899999999999999999996 698888654 357999999999999542 35889999999999
Q ss_pred hCC-eEEEEecCCCCCHHHHHHHHHHH
Q psy5810 183 WGV-KFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 183 ~~~-~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
++. +|+||||++|.|++++|+.+++.
T Consensus 147 ~~~~~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 147 IGAVKYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred cCCcEEEEecccccCCHHHHHHHHHHh
Confidence 985 89999999999999999999864
No 46
>PLN03110 Rab GTPase; Provisional
Probab=99.97 E-value=3.6e-30 Score=213.03 Aligned_cols=151 Identities=21% Similarity=0.248 Sum_probs=127.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+++|++|||||||++ +|.+ ..+...+.++++ .+++|||+|++ ..++..+++
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~-~l~~--~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~---- 83 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILS-RFTR--NEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR---- 83 (216)
T ss_pred ceeEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhC----
Confidence 34789999999999999998 7877 344333333322 67799999986 455666777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
+++++|+|||++++.+|+.+..|+..+.+. ...++|+++||||+|+.+.+.++.+++..++..++++|+++||
T Consensus 84 ------~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA 156 (216)
T PLN03110 84 ------GAVGALLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSA 156 (216)
T ss_pred ------CCCEEEEEEECCChHHHHHHHHHHHHHHHh-CCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 899999999999999999999999988654 3467999999999999887888999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
++|.|++++|++++..+.+...
T Consensus 157 ~~g~~v~~lf~~l~~~i~~~~~ 178 (216)
T PLN03110 157 LEATNVEKAFQTILLEIYHIIS 178 (216)
T ss_pred CCCCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999998877433
No 47
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=5.2e-30 Score=207.79 Aligned_cols=146 Identities=24% Similarity=0.335 Sum_probs=121.0
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~ 116 (250)
||+++|++|||||||++ +|.+ ..|...+.++++ .+.+|||+|++ ..+++.+++
T Consensus 2 kivivG~~~vGKTsli~-~~~~--~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~-------- 70 (189)
T cd04134 2 KVVVLGDGACGKTSLLN-VFTR--GYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYA-------- 70 (189)
T ss_pred EEEEECCCCCCHHHHHH-HHhc--CCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhcccccccccc--------
Confidence 79999999999999998 8887 455444444432 56789999986 567777888
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCC------------ccCHHHHHHHHHHh
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRR------------QVTHSDGKKLAYAW 183 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~~~ 183 (250)
++|++|+|||+++++||+.+. .|+..+.+. ..+.|++|||||+|+.+.+ .++.+++.++++..
T Consensus 71 --~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~--~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 146 (189)
T cd04134 71 --DTDVIMLCFSVDSPDSLENVESKWLGEIREH--CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRI 146 (189)
T ss_pred --CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence 899999999999999999986 699988654 3589999999999996533 46778888999888
Q ss_pred C-CeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 184 G-VKFVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 184 ~-~~~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
+ ++|+||||++|.||+++|.++++.+....
T Consensus 147 ~~~~~~e~SAk~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 147 NALRYLECSAKLNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred CCCEEEEccCCcCCCHHHHHHHHHHHHhccc
Confidence 7 68999999999999999999998887433
No 48
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.97 E-value=4.6e-30 Score=203.78 Aligned_cols=147 Identities=22% Similarity=0.391 Sum_probs=124.3
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
.+||+++|++|||||||++ ++.+ ..|.+.+.++.+ .+.+|||+|++ ..++..+++
T Consensus 3 ~~ki~vvG~~~~GKSsl~~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~----- 74 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLL-RFSE--DSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYR----- 74 (167)
T ss_pred ceEEEEECCCCCCHHHHHH-HHhh--CcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhC-----
Confidence 4789999999999999998 8887 444444433322 56799999986 444555666
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++|++++|||++++++|+.+..|+..+.+. ...++|+++||||+|+.+.+.+..+++..+++.++++++++||+
T Consensus 75 -----~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (167)
T cd01867 75 -----GAMGIILVYDITDEKSFENIRNWMRNIEEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAK 148 (167)
T ss_pred -----CCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 899999999999999999999999999764 34678999999999998777888889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy5810 194 LVYKTDELLVGIARQAGL 211 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~ 211 (250)
+|.|++++|+++++.+..
T Consensus 149 ~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 149 ANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999988764
No 49
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.97 E-value=2.1e-30 Score=204.15 Aligned_cols=144 Identities=22% Similarity=0.349 Sum_probs=126.4
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
||+++|++|||||||++ +|.+ ..|.+.+.++.+ .+.+||++|++ ..+...+++
T Consensus 1 Ki~vvG~~~vGKtsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~------- 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLIN-RLIN--GEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYR------- 70 (162)
T ss_dssp EEEEEESTTSSHHHHHH-HHHH--SSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHT-------
T ss_pred CEEEECCCCCCHHHHHH-HHHh--hcccccccccccccccccccccccccccccccccccccccccccccccc-------
Confidence 79999999999999998 8888 566666666652 57899999986 344456666
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
++|++|+|||+++++||+.+..|+..+..... .++|++|||||.|+.+.+.++.+++++++++++.+|+|+||+++
T Consensus 71 ---~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~ 146 (162)
T PF00071_consen 71 ---NSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNG 146 (162)
T ss_dssp ---TESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTT
T ss_pred ---cccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCC
Confidence 89999999999999999999999999977643 57999999999999888899999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQAG 210 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~ 210 (250)
.||.++|..+++.+.
T Consensus 147 ~~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 147 ENVKEIFQELIRKIL 161 (162)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999875
No 50
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.97 E-value=4.8e-30 Score=202.59 Aligned_cols=146 Identities=21% Similarity=0.338 Sum_probs=122.9
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ ++++ ..+...+.++++ .+.+|||+|++ ..+++.+++
T Consensus 1 ~ki~~vG~~~vGKTsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------ 71 (168)
T cd04119 1 IKVISMGNSGVGKSCIIK-RYCE--GRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYK------ 71 (168)
T ss_pred CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhc------
Confidence 479999999999999998 8887 444433333321 56799999986 445566666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC----CCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI----GEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET 190 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~----~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev 190 (250)
++|++|+|||++++++|+.+..|+.++.+.... .+.|+++|+||+|+.+.+.++.+++..++...+++++++
T Consensus 72 ----~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (168)
T cd04119 72 ----DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFET 147 (168)
T ss_pred ----cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEE
Confidence 899999999999999999999999999776442 578999999999997667788899999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy5810 191 SVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~ 210 (250)
||++|.|+.++|++|++.+.
T Consensus 148 Sa~~~~gi~~l~~~l~~~l~ 167 (168)
T cd04119 148 SACTGEGVNEMFQTLFSSIV 167 (168)
T ss_pred ECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999998775
No 51
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.97 E-value=8.7e-30 Score=205.68 Aligned_cols=148 Identities=22% Similarity=0.342 Sum_probs=121.1
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+|+|++|||||||++ +|.+ ..+..++.++++ .+.+|||+|++ ..+++.+++
T Consensus 1 ~ki~vvG~~~vGKTsli~-~l~~--~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------ 71 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLI-VYSQ--GKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYP------ 71 (187)
T ss_pred CeEEEECCCCCCHHHHHH-HHHh--CcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCC------
Confidence 489999999999999998 8887 444433333321 57789999986 455666777
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC----CccCHHHHHHHHHHhCC-eEE
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR----RQVTHSDGKKLAYAWGV-KFV 188 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~----~~v~~~~~~~~~~~~~~-~~~ 188 (250)
++|++|+|||+++++||+++. .|+..+... .+++|+++||||+|+... +.++.+++.+++..+++ +++
T Consensus 72 ----~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 145 (187)
T cd04132 72 ----DVDVLLICYAVDNPTSLDNVEDKWFPEVNHF--CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYL 145 (187)
T ss_pred ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEE
Confidence 899999999999999999996 598887543 367999999999998543 36788899999999998 899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
++||++|.||.++|..+++.+.....
T Consensus 146 e~Sa~~~~~v~~~f~~l~~~~~~~~~ 171 (187)
T cd04132 146 ECSAKTMENVEEVFDTAIEEALKKEG 171 (187)
T ss_pred EccCCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999988875433
No 52
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.97 E-value=6.7e-30 Score=206.04 Aligned_cols=146 Identities=12% Similarity=0.115 Sum_probs=118.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ +|.. ..|.+.+.++++ .+++|||+|++ ..+++.+++
T Consensus 1 ~Ki~vlG~~~vGKTsLi~-~~~~--~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~------ 71 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMV-KYVE--GEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCN------ 71 (182)
T ss_pred CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCc------
Confidence 479999999999999997 8887 455444444432 56789999986 566777777
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC-----CCccCHHHHHHHHHHhCCeEEE
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER-----RRQVTHSDGKKLAYAWGVKFVE 189 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-----~~~v~~~~~~~~~~~~~~~~~e 189 (250)
++|++++|||+++++||+++..|+.++.+.. ....| ++||||+|+.. .+....+++.++++.+++++++
T Consensus 72 ----~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e 145 (182)
T cd04128 72 ----DAVAILFMFDLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIF 145 (182)
T ss_pred ----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEE
Confidence 8999999999999999999999999987652 34566 68899999842 1222346788899999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhh
Q psy5810 190 TSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
+||++|.|++++|+++++.+.+.
T Consensus 146 ~SAk~g~~v~~lf~~l~~~l~~~ 168 (182)
T cd04128 146 CSTSHSINVQKIFKIVLAKAFDL 168 (182)
T ss_pred EeCCCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999988753
No 53
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.97 E-value=7e-30 Score=207.32 Aligned_cols=152 Identities=22% Similarity=0.351 Sum_probs=124.5
Q ss_pred EEEEEEcCCCCchhhhchhhhccccc---cccccccCcee-----------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVE---NFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~---~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ +|.+... .+.++.+.++. .+.+|||+|++ ..++..+++
T Consensus 1 ~Ki~vvG~~~vGKTSli~-~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------- 72 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLV-RFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYR------- 72 (191)
T ss_pred CEEEEECCCCCCHHHHHH-HHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHcc-------
Confidence 479999999999999998 7877311 22233332221 56799999986 344556666
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
++|++|+|||++++++|+++..|+..+.+. ...++|+++||||+|+...+.+..+++..+++.++++|+|+||++|
T Consensus 73 ---~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~ 148 (191)
T cd04112 73 ---DAHALLLLYDITNKASFDNIRAWLTEIKEY-AQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTG 148 (191)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 899999999999999999999999998765 3457899999999999776788888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhh
Q psy5810 196 YKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~~~~ 215 (250)
.|++++|.++++.+......
T Consensus 149 ~~v~~l~~~l~~~~~~~~~~ 168 (191)
T cd04112 149 LNVELAFTAVAKELKHRKYE 168 (191)
T ss_pred CCHHHHHHHHHHHHHHhccc
Confidence 99999999999988766433
No 54
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.97 E-value=1.3e-29 Score=200.85 Aligned_cols=143 Identities=22% Similarity=0.396 Sum_probs=118.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ ++++ +.|..++.++.. .+.+|||+|++ ..++..++.
T Consensus 2 ~kv~~vG~~~vGKTsli~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------- 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVL-RFVK--GTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSIS------- 71 (165)
T ss_pred eEEEEECCCCCCHHHHHH-HHHh--CCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhh-------
Confidence 579999999999999998 8887 444444444322 56799999987 333444555
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++|++++|||+++++||+.+..|+..+.+... ..++|+++||||+|+.+.+.+..+++..++..++++|+|+||+
T Consensus 72 ---~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~ 148 (165)
T cd04140 72 ---KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAK 148 (165)
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecC
Confidence 89999999999999999999999888765432 2579999999999997767888888999999999999999999
Q ss_pred CCCCHHHHHHHHHH
Q psy5810 194 LVYKTDELLVGIAR 207 (250)
Q Consensus 194 ~~~~I~~lf~~l~~ 207 (250)
+|.|++++|++|++
T Consensus 149 ~g~~v~~~f~~l~~ 162 (165)
T cd04140 149 TNHNVQELFQELLN 162 (165)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999999985
No 55
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.97 E-value=1.6e-29 Score=201.57 Aligned_cols=146 Identities=18% Similarity=0.279 Sum_probs=122.4
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
||+++|++|||||||++ +|+. ..|...|.++++ .+.+|||+|++ ..++..+++
T Consensus 2 ki~ivG~~~vGKTsli~-~~~~--~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------- 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLIN-RFCK--DVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYR------- 71 (170)
T ss_pred EEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhc-------
Confidence 79999999999999998 8888 556555555543 46799999986 456667777
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC--ccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR--QVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++|++++|||++++++|+.+..|+.++.+.....+.|+++||||.|+.+.+ .+..+++.++++.++.+|+++||+
T Consensus 72 ---~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 148 (170)
T cd04108 72 ---GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSAL 148 (170)
T ss_pred ---CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECC
Confidence 899999999999999999999999998766545568899999999985533 345677888888889999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy5810 194 LVYKTDELLVGIARQAGL 211 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~ 211 (250)
+|.|++++|+.+++.+.+
T Consensus 149 ~g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 149 SGENVREFFFRVAALTFE 166 (170)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987753
No 56
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.97 E-value=1.5e-29 Score=200.29 Aligned_cols=146 Identities=23% Similarity=0.350 Sum_probs=122.2
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccc----cccCcee-----------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
.+||+++|++|||||||++ ++.+ ..+.. +.+.++. .+++|||+|++ ..++..+++
T Consensus 2 ~~ki~i~G~~~vGKSsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----- 73 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLL-RFAD--DTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR----- 73 (166)
T ss_pred eEEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhC-----
Confidence 3689999999999999998 7887 33333 3332221 57889999986 344555666
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++|++++|||+++++||+.+..|+..+.+.. ..+.|+++||||+|+.+.+.++.+++..+++.++++|+++||+
T Consensus 74 -----~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (166)
T cd01869 74 -----GAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAK 147 (166)
T ss_pred -----cCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECC
Confidence 8999999999999999999999999986642 3578999999999998777888899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy5810 194 LVYKTDELLVGIARQAG 210 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~ 210 (250)
+|.|++++|.++++.+.
T Consensus 148 ~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 148 NATNVEQAFMTMAREIK 164 (166)
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999998775
No 57
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.97 E-value=1.3e-29 Score=198.92 Aligned_cols=144 Identities=22% Similarity=0.362 Sum_probs=121.6
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ +|++ ..+...+.++.+ .+.+|||+|++ +.++..+++
T Consensus 2 ~ki~iiG~~~vGKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~------- 71 (162)
T cd04138 2 YKLVVVGAGGVGKSALTI-QLIQ--NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR------- 71 (162)
T ss_pred eEEEEECCCCCCHHHHHH-HHHh--CCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHh-------
Confidence 579999999999999998 8887 444444444432 36789999986 456666777
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
++|++++|||++++.+|+++..|+..+.+.....+.|+++|+||+|+.+ +.+...++.++++.++++++++||++|
T Consensus 72 ---~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (162)
T cd04138 72 ---TGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTR 147 (162)
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCC
Confidence 8999999999999999999999999998765556899999999999865 567788888999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQA 209 (250)
Q Consensus 196 ~~I~~lf~~l~~~i 209 (250)
.|++++|+++++.+
T Consensus 148 ~gi~~l~~~l~~~~ 161 (162)
T cd04138 148 QGVEEAFYTLVREI 161 (162)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998654
No 58
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.97 E-value=1.7e-29 Score=209.42 Aligned_cols=147 Identities=18% Similarity=0.270 Sum_probs=121.5
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
...+||+++|++|||||||++ +|.. +.|...+.++++ .+.+|||+|++ ..++..+++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~-~~~~--~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~--- 84 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVK-RHLT--GEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYI--- 84 (219)
T ss_pred CCceEEEEECcCCCCHHHHHH-HHhh--CCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcc---
Confidence 556889999999999999998 7876 334333333322 56789999987 566777788
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++|++|+|||+++++||+.+..|+.++.+. ..++|++|||||+|+.. +.+..+++ ++++..+++|+|+|
T Consensus 85 -------~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~--~~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~S 153 (219)
T PLN03071 85 -------HGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEIS 153 (219)
T ss_pred -------cccEEEEEEeCCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcC
Confidence 899999999999999999999999999764 36799999999999864 45555555 78888889999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~ 212 (250)
|++|.||+++|.+|++.+.+.
T Consensus 154 Ak~~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 154 AKSNYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCCCCHHHHHHHHHHHHHcC
Confidence 999999999999999988754
No 59
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.97 E-value=1.2e-29 Score=200.30 Aligned_cols=145 Identities=27% Similarity=0.456 Sum_probs=122.0
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~ 116 (250)
||+++|++|||||||++ ++.+ ..+...+.++.. .+.+|||+|++ ..++..+++
T Consensus 2 ki~v~G~~~~GKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~-------- 70 (164)
T smart00173 2 KLVVLGSGGVGKSALTI-QFVQ--GHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMR-------- 70 (164)
T ss_pred EEEEECCCCCCHHHHHH-HHHh--CcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHh--------
Confidence 79999999999999998 8887 344433333321 57789999986 344555666
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
++|++++|||++++++|+.+..|...+.+.....+.|+++||||+|+...+.++.+++..+++.++.+|+++||++|.
T Consensus 71 --~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (164)
T smart00173 71 --TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERV 148 (164)
T ss_pred --hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCC
Confidence 899999999999999999999999988776555689999999999998777788888999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy5810 197 KTDELLVGIARQAG 210 (250)
Q Consensus 197 ~I~~lf~~l~~~i~ 210 (250)
|++++|++|++.+.
T Consensus 149 ~i~~l~~~l~~~~~ 162 (164)
T smart00173 149 NVDEAFYDLVREIR 162 (164)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.97 E-value=2e-29 Score=198.77 Aligned_cols=146 Identities=25% Similarity=0.383 Sum_probs=122.0
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
.+||+++|++|||||||++ ++++ ..+...+.++.. .+.+|||+|++ ..++..+++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------ 72 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTI-QFIQ--SYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMR------ 72 (164)
T ss_pred ceEEEEECCCCCcHHHHHH-HHHh--CCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHh------
Confidence 3689999999999999998 7876 333333333321 46789999976 445555666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+...+.++.+++.++++..+++++++||++
T Consensus 73 ----~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (164)
T cd04145 73 ----TGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKD 148 (164)
T ss_pred ----hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCC
Confidence 8999999999999999999999999997765567899999999999987777888889999999899999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy5810 195 VYKTDELLVGIARQA 209 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i 209 (250)
|.|++++|+++++.+
T Consensus 149 ~~~i~~l~~~l~~~~ 163 (164)
T cd04145 149 RLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998754
No 61
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.96 E-value=4.3e-29 Score=198.33 Aligned_cols=143 Identities=17% Similarity=0.214 Sum_probs=115.9
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ ++.. ..+...+.++.+ .+.+|||+|++ ..++..++.
T Consensus 1 ~ki~vvG~~~vGKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------ 71 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVK-RHLT--GEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYI------ 71 (166)
T ss_pred CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhc------
Confidence 479999999999999998 7776 333333333322 46789999987 455566666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++|+|||+++++||+.+..|+.++.+.. .++|+++||||+|+.+ +.+. .+..++++..+++++|+||++
T Consensus 72 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~ 143 (166)
T cd00877 72 ----GGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKS 143 (166)
T ss_pred ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCC
Confidence 8999999999999999999999999997653 3899999999999974 3443 345667777888999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy5810 195 VYKTDELLVGIARQAGL 211 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~ 211 (250)
|.|++++|++|++.+.+
T Consensus 144 ~~~v~~~f~~l~~~~~~ 160 (166)
T cd00877 144 NYNFEKPFLWLARKLLG 160 (166)
T ss_pred CCChHHHHHHHHHHHHh
Confidence 99999999999988875
No 62
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.96 E-value=4.4e-29 Score=198.74 Aligned_cols=146 Identities=23% Similarity=0.302 Sum_probs=123.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCcc---ccCCCccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQR---CLTPMPFCSQVE 112 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~~---~~~~~~~~~~~~ 112 (250)
.+||+++|++|||||||++ ++.. ..+...+.++++ .+.+|||+|+++ .++..+++
T Consensus 2 ~~ki~vvG~~~vGKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~---- 74 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTY-RFCA--GRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYR---- 74 (170)
T ss_pred ceEEEEECCCCCCHHHHHH-HHHh--CCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhc----
Confidence 4689999999999999998 7876 334333333321 577999999872 45666676
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++++|||++++.+|+.+..|+..+.......++|+++||||+|+.+.+.++.+++.++++..+++|+|+||
T Consensus 75 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (170)
T cd04115 75 ------NVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSA 148 (170)
T ss_pred ------CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEec
Confidence 89999999999999999999999999977655578999999999999888888999999999999999999999
Q ss_pred CC---CCCHHHHHHHHHHHH
Q psy5810 193 GL---VYKTDELLVGIARQA 209 (250)
Q Consensus 193 ~~---~~~I~~lf~~l~~~i 209 (250)
++ +.+++++|.++++.+
T Consensus 149 ~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 149 KDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCcCCCCHHHHHHHHHHHh
Confidence 99 899999999998765
No 63
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.96 E-value=5e-29 Score=198.68 Aligned_cols=143 Identities=27% Similarity=0.372 Sum_probs=119.3
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT 117 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~ 117 (250)
|+|+|++|||||||++ +|.+ ..|...+.++.. .+++|||+|++ ..+++.++.
T Consensus 1 i~i~G~~~vGKTsli~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--------- 68 (174)
T smart00174 1 LVVVGDGAVGKTCLLI-SYTT--NAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYP--------- 68 (174)
T ss_pred CEEECCCCCCHHHHHH-HHHh--CCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcC---------
Confidence 6899999999999998 8887 455544444432 47799999986 456666777
Q ss_pred CCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHHhC
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYAWG 184 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~~~ 184 (250)
++|++|+|||+++++||+.+. .|+..+.+. .+++|+++||||+|+... +.++.+++.++++.++
T Consensus 69 -~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (174)
T smart00174 69 -DTDVFLICFSVDSPASFENVKEKWYPEVKHF--CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG 145 (174)
T ss_pred -CCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC
Confidence 899999999999999999996 599988654 368999999999998542 3488899999999999
Q ss_pred C-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 185 V-KFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 185 ~-~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
. +|+|+||++|.||+++|..+++.+.+
T Consensus 146 ~~~~~e~Sa~~~~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 146 AVKYLECSALTQEGVREVFEEAIRAALN 173 (174)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHhcC
Confidence 6 89999999999999999999987653
No 64
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.96 E-value=5.9e-29 Score=195.76 Aligned_cols=142 Identities=20% Similarity=0.316 Sum_probs=119.9
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce-----------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-----------------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-----------------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
+||+++|++|||||||++ ++.+ ..+...+.+++ ..+.+|||+|++ ..++..+++
T Consensus 1 ~kv~~vG~~~~GKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---- 73 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQ-RFVK--GIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYR---- 73 (162)
T ss_pred CEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhc----
Confidence 479999999999999998 7887 33333333332 157899999986 556666777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++++|||++++++|+.+..|+..+.+. ..++|+++|+||+|+..++.++.+++..+++.++++++++||
T Consensus 74 ------~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~--~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 145 (162)
T cd04106 74 ------GAQACILVFSTTDRESFEAIESWKEKVEAE--CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSV 145 (162)
T ss_pred ------CCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEEC
Confidence 899999999999999999999999998653 368999999999999777788889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy5810 193 GLVYKTDELLVGIARQ 208 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~ 208 (250)
++|.|++++|.+|...
T Consensus 146 ~~~~~v~~l~~~l~~~ 161 (162)
T cd04106 146 KDDFNVTELFEYLAEK 161 (162)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999753
No 65
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.96 E-value=3.8e-29 Score=197.88 Aligned_cols=145 Identities=28% Similarity=0.388 Sum_probs=118.9
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCcc---ccCCCcccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQR---CLTPMPFCSQVENFV 115 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~~---~~~~~~~~~~~~~~~ 115 (250)
||+++|++|||||||++ +++. ..|...+.++.. .+.+|||+|+++ .....+++
T Consensus 1 ki~vvG~~~~GKtsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~------- 70 (165)
T cd04146 1 KIAVLGASGVGKSALVV-RFLT--KRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIR------- 70 (165)
T ss_pred CEEEECCCCCcHHHHHH-HHHh--CccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHH-------
Confidence 59999999999999998 7776 334333333321 477999999873 22344455
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++|+|||+++++||+.+..|+..+..... ..++|+++||||+|+.+.+.++.+++.++++..+++|+++||++
T Consensus 71 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~ 147 (165)
T cd04146 71 ---WADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAE 147 (165)
T ss_pred ---hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCC
Confidence 89999999999999999999999998876543 45799999999999977788899999999999999999999999
Q ss_pred CC-CHHHHHHHHHHHHH
Q psy5810 195 VY-KTDELLVGIARQAG 210 (250)
Q Consensus 195 ~~-~I~~lf~~l~~~i~ 210 (250)
|. ||+++|.++++.+.
T Consensus 148 ~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 148 DYDGVHSVFHELCREVR 164 (165)
T ss_pred CchhHHHHHHHHHHHHh
Confidence 95 99999999998654
No 66
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.96 E-value=9.4e-29 Score=196.47 Aligned_cols=145 Identities=16% Similarity=0.197 Sum_probs=120.6
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+++|++|||||||++ +|.+ ..+.+.+.++++ .+++|||+|++ +.++..+++
T Consensus 4 ~~~ki~vvG~~~~GKTsli~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~---- 76 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMN-RYVT--NKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYR---- 76 (170)
T ss_pred eEEEEEEECCCCCCHHHHHH-HHHc--CCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhc----
Confidence 35789999999999999998 8887 444433333321 56789999987 566777777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC---CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEE
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY---IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFV 188 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~ 188 (250)
++|++++|||+++++||+.+..|+.++.+... ..++|+++||||+|+. .+.++.+++.+++++++. +++
T Consensus 77 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 149 (170)
T cd04116 77 ------GSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYF 149 (170)
T ss_pred ------CCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEE
Confidence 89999999999999999999999998876532 2568999999999986 467888999999999884 799
Q ss_pred EEecCCCCCHHHHHHHHHHH
Q psy5810 189 ETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~ 208 (250)
|+||++|.|+.++|.++++.
T Consensus 150 e~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 150 ETSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EEECCCCCCHHHHHHHHHhh
Confidence 99999999999999999875
No 67
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.96 E-value=1.5e-28 Score=200.76 Aligned_cols=159 Identities=17% Similarity=0.257 Sum_probs=120.3
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCccc--cCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQRC--LTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~~~--~~~~~~~~~~~~~ 114 (250)
+||+|+|++|||||||++ +|.+ ..|...+.++.+ .+.+|||+|.... .....+.. ...
T Consensus 1 ~kI~ivG~~~vGKTsLi~-~~~~--~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~--~~~ 75 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVR-QFLA--QEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMD--PRF 75 (198)
T ss_pred CEEEEECCCCCcHHHHHH-HHHc--CCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHH--HHH
Confidence 479999999999999998 8887 344433333321 4668999997521 11110000 011
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh--CCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-HhCCeEEEEe
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK--YIGEKAVILVANKADLERRRQVTHSDGKKLAY-AWGVKFVETS 191 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~evS 191 (250)
..++++|++|+|||+++++||+.+..|+..+.+.. ...++|+++||||+|+...+.++.+++..++. .++++|+|+|
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~S 155 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECS 155 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEec
Confidence 12238999999999999999999999999887654 24679999999999997777788887877764 5689999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
|++|.||+++|+.+++.+....+.
T Consensus 156 ak~g~~v~~lf~~i~~~~~~~~~~ 179 (198)
T cd04142 156 AKYNWHILLLFKELLISATTRGRS 179 (198)
T ss_pred CCCCCCHHHHHHHHHHHhhccCCC
Confidence 999999999999999988765444
No 68
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.96 E-value=1.3e-28 Score=194.64 Aligned_cols=145 Identities=23% Similarity=0.275 Sum_probs=120.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
.+||+++|++|||||||++ ++.+. .+...+.++.+ .+.+||++|++ ..+++.+++
T Consensus 3 ~~ki~vvG~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~----- 74 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLS-RFTRN--EFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYR----- 74 (165)
T ss_pred ceEEEEECCCCCCHHHHHH-HHhcC--CCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHC-----
Confidence 3689999999999999998 78763 33322222221 56799999986 455566666
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
+++++|+|||++++.+|+++.+|+..+.+. ...++|+++||||+|+...+.+..++...++...+++|+|+||+
T Consensus 75 -----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (165)
T cd01868 75 -----GAVGALLVYDITKKQTFENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSAL 148 (165)
T ss_pred -----CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECC
Confidence 899999999999999999999999998665 33468999999999998777888889999999889999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy5810 194 LVYKTDELLVGIARQA 209 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i 209 (250)
+|.|++++|++++..+
T Consensus 149 ~~~~v~~l~~~l~~~i 164 (165)
T cd01868 149 DGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 69
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.96 E-value=1.8e-28 Score=194.92 Aligned_cols=146 Identities=24% Similarity=0.367 Sum_probs=121.4
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCc----e-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD----V-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~----~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+|+|++|||||||++ ++.+. .+...+.++ . ..+.+|||+|++ ..+...+++
T Consensus 5 ~ki~vvG~~~vGKSsLl~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------ 75 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLL-QFTDK--RFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYR------ 75 (168)
T ss_pred eEEEEECCCCCCHHHHHH-HHHcC--CCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc------
Confidence 679999999999999998 78873 333222222 1 157799999986 344455566
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||+++++||+.+..|+.++.+.. .+++|+++||||.|+.+.+.++.+++..++...+++|+|+||++
T Consensus 76 ----~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 150 (168)
T cd01866 76 ----GAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKT 150 (168)
T ss_pred ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 8999999999999999999999999986653 46799999999999976677888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy5810 195 VYKTDELLVGIARQAGL 211 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~ 211 (250)
+.|++++|.++++.+.+
T Consensus 151 ~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 151 ASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988754
No 70
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.96 E-value=1.8e-28 Score=199.04 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=120.0
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccc-cccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
+||+|+|++|||||||++ +|.+ ..|.. .+.++++ .+.+|||+|++ ..++..+++
T Consensus 1 ~ki~vvG~~~vGKSsLi~-~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~----- 72 (193)
T cd04118 1 VKVVMLGKESVGKTSLVE-RYVH--HRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYR----- 72 (193)
T ss_pred CEEEEECCCCCCHHHHHH-HHHh--CCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcC-----
Confidence 479999999999999998 7887 33332 2333321 45689999986 455666676
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC----CCccCHHHHHHHHHHhCCeEEE
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER----RRQVTHSDGKKLAYAWGVKFVE 189 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~----~~~v~~~~~~~~~~~~~~~~~e 189 (250)
++|++++|||++++.+|+.+..|+..+.+. ..+.|+++|+||+|+.+ .+.++.+++.+++..+++++++
T Consensus 73 -----~~d~iilv~d~~~~~s~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 145 (193)
T cd04118 73 -----GAKAAIVCYDLTDSSSFERAKFWVKELQNL--EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFE 145 (193)
T ss_pred -----CCCEEEEEEECCCHHHHHHHHHHHHHHHhc--CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEE
Confidence 899999999999999999999999998653 35789999999999843 2466777888899988999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 190 TSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
+||++|.|++++|+++++.+.+..
T Consensus 146 ~Sa~~~~gv~~l~~~i~~~~~~~~ 169 (193)
T cd04118 146 TSSKTGQNVDELFQKVAEDFVSRA 169 (193)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999887544
No 71
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.96 E-value=1.9e-28 Score=194.61 Aligned_cols=146 Identities=28% Similarity=0.419 Sum_probs=124.6
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ +|.+ ..+..++.++.. .+++|||+|++ ..++..+++
T Consensus 2 ~ki~liG~~~~GKTsli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------- 71 (168)
T cd04177 2 YKIVVLGAGGVGKSALTV-QFVQ--NVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIK------- 71 (168)
T ss_pred eEEEEECCCCCCHHHHHH-HHHh--CCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHh-------
Confidence 579999999999999998 8887 444444444432 45789999976 566677777
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEEEecCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVETSVGL 194 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~evSa~~ 194 (250)
.++++++|||++++++|+.+..|...+.+.....+.|++++|||.|+.+.+.++.+++..+++.++ ++++++||++
T Consensus 72 ---~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 148 (168)
T cd04177 72 ---SGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARK 148 (168)
T ss_pred ---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCC
Confidence 899999999999999999999999999776556789999999999998777888888888988888 7899999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy5810 195 VYKTDELLVGIARQAG 210 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~ 210 (250)
+.|++++|.+++.++.
T Consensus 149 ~~~i~~~f~~i~~~~~ 164 (168)
T cd04177 149 RTNVDEVFIDLVRQII 164 (168)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998765
No 72
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.96 E-value=1.5e-28 Score=193.97 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=119.0
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce----------------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV----------------FFIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~----------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
+||+++|++|||||||++ ++......|.+.+.+++ ..+.+|||+|++ ..++..++.
T Consensus 1 ~ki~vvG~~~~GKtsl~~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~----- 74 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQ-MFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWE----- 74 (164)
T ss_pred CEEEEECCCCCCHHHHHH-HHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhC-----
Confidence 489999999999999998 77653223444433332 156799999986 344455555
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++|++++|||++++++|+.+..|+..+.+.. .++|+++||||+|+.+.+.++..++..++..++++++++||+
T Consensus 75 -----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 147 (164)
T cd04101 75 -----SPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSAL 147 (164)
T ss_pred -----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCC
Confidence 8999999999999999999999999986643 579999999999997777788888888888888999999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy5810 194 LVYKTDELLVGIARQA 209 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i 209 (250)
++.|++++|+.+++.+
T Consensus 148 ~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 148 RGVGYEEPFESLARAF 163 (164)
T ss_pred CCCChHHHHHHHHHHh
Confidence 9999999999999765
No 73
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.96 E-value=1.8e-28 Score=194.02 Aligned_cols=144 Identities=22% Similarity=0.295 Sum_probs=119.7
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
.+||+++|++|||||||++ ++.. ..+..++.++.+ .+.+|||+|++ ..++..+++
T Consensus 3 ~~kv~vvG~~~~GKTsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~----- 74 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQ-RFKS--GTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYR----- 74 (165)
T ss_pred eeEEEEECCCCCCHHHHHH-HHhh--CCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhc-----
Confidence 4789999999999999998 7876 344333333321 56799999986 445556666
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEec
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSV 192 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa 192 (250)
++|++++|||++++.||+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++.++++.++. .++|+||
T Consensus 75 -----~~d~~llv~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa 148 (165)
T cd01864 75 -----SANGAIIAYDITRRSSFESVPHWIEEVEKY-GASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSA 148 (165)
T ss_pred -----cCCEEEEEEECcCHHHHHhHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEEC
Confidence 899999999999999999999999999654 346899999999999987778888899999998886 5899999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy5810 193 GLVYKTDELLVGIARQ 208 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~ 208 (250)
++|.|++++|+++++.
T Consensus 149 ~~~~~v~~~~~~l~~~ 164 (165)
T cd01864 149 KESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999865
No 74
>PLN03108 Rab family protein; Provisional
Probab=99.96 E-value=2.6e-28 Score=201.08 Aligned_cols=150 Identities=22% Similarity=0.326 Sum_probs=125.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
.+||+|+|++|||||||++ ++.. ..+...+.++++ .+.+|||+|++ ..++..+++
T Consensus 6 ~~kivivG~~gvGKStLi~-~l~~--~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~----- 77 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLL-QFTD--KRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYR----- 77 (210)
T ss_pred ceEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc-----
Confidence 4789999999999999998 7877 333333322221 46799999986 445566677
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++|++|+|||++++++|+.+..|+..+.+. ...+.|+++|+||+|+.+.+.++.+++.++++.++++|+++||+
T Consensus 78 -----~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~-~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~ 151 (210)
T PLN03108 78 -----GAAGALLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAK 151 (210)
T ss_pred -----cCCEEEEEEECCcHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCC
Confidence 899999999999999999999999988654 33579999999999998878899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhh
Q psy5810 194 LVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~~~ 214 (250)
++.||+++|.++++.+.++..
T Consensus 152 ~~~~v~e~f~~l~~~~~~~~~ 172 (210)
T PLN03108 152 TAQNVEEAFIKTAAKIYKKIQ 172 (210)
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999998876544
No 75
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.96 E-value=1.7e-28 Score=193.20 Aligned_cols=143 Identities=24% Similarity=0.330 Sum_probs=119.4
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ ++.+. .+...+.++. ..+++||++|++ ..++..+++
T Consensus 1 ~ki~v~G~~~vGKTsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~------ 71 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLH-RFVEN--KFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYR------ 71 (161)
T ss_pred CEEEEECCCCCCHHHHHH-HHHhC--CCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhc------
Confidence 479999999999999998 78763 3332222221 257799999986 444555666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++++|+.+..|+..+... ..+++|+++|+||+|+.+.+.++.+++..+++.++++++++||++
T Consensus 72 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 146 (161)
T cd04113 72 ----GAAGALLVYDITNRTSFEALPTWLSDARAL-ASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALT 146 (161)
T ss_pred ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCC
Confidence 899999999999999999999999988554 346899999999999987778889999999999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy5810 195 VYKTDELLVGIARQ 208 (250)
Q Consensus 195 ~~~I~~lf~~l~~~ 208 (250)
+.|+.++|+++++.
T Consensus 147 ~~~i~~~~~~~~~~ 160 (161)
T cd04113 147 GENVEEAFLKCARS 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 76
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.96 E-value=2.7e-28 Score=192.62 Aligned_cols=143 Identities=17% Similarity=0.197 Sum_probs=116.6
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ ++.. ..|.+.+.++. ..+.+|||+|++ ..++..+++
T Consensus 1 ~ki~vvG~~~vGKTsli~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------ 71 (161)
T cd04124 1 VKIILLGDSAVGKSKLVE-RFLM--DGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYH------ 71 (161)
T ss_pred CEEEEECCCCCCHHHHHH-HHHh--CCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhC------
Confidence 479999999999999998 7877 44444333221 156799999987 466677777
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++.+|+.+..|+..+.+. .++.|+++|+||+|+... + .++..++++..+++++++||++
T Consensus 72 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~ 142 (161)
T cd04124 72 ----KAHACILVFDVTRKITYKNLSKWYEELREY--RPEIPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAAD 142 (161)
T ss_pred ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCC
Confidence 899999999999999999999999999653 357999999999998531 2 3456677888889999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy5810 195 VYKTDELLVGIARQAGLN 212 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~ 212 (250)
|.|++++|+.+++.+.+.
T Consensus 143 ~~gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 143 GTNVVKLFQDAIKLAVSY 160 (161)
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999887754
No 77
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.96 E-value=1.7e-28 Score=200.44 Aligned_cols=139 Identities=16% Similarity=0.198 Sum_probs=117.1
Q ss_pred EcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 57 HSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 57 iG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+|++|||||||++ +|+. ..|...+.++++ .+.+|||+|++ ..+++.+|+ +
T Consensus 1 vG~~~vGKTsLi~-r~~~--~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~----------~ 67 (200)
T smart00176 1 VGDGGTGKTTFVK-RHLT--GEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYI----------Q 67 (200)
T ss_pred CCCCCCCHHHHHH-HHhc--CCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhc----------C
Confidence 6999999999998 8887 455555555543 56689999987 567778888 9
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD 199 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~ 199 (250)
+|++|+|||++++.||+.+..|+.++.+.. .++|++|||||+|+.. +.+..++ ..+++..++.|+||||++|.||.
T Consensus 68 ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~~~~~~~e~SAk~~~~v~ 143 (200)
T smart00176 68 GQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRKKNLQYYDISAKSNYNFE 143 (200)
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccc-ccCCHHH-HHHHHHcCCEEEEEeCCCCCCHH
Confidence 999999999999999999999999997653 6899999999999854 4565554 46888889999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy5810 200 ELLVGIARQAGLN 212 (250)
Q Consensus 200 ~lf~~l~~~i~~~ 212 (250)
++|.+|++.+.+.
T Consensus 144 ~~F~~l~~~i~~~ 156 (200)
T smart00176 144 KPFLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 78
>KOG0097|consensus
Probab=99.96 E-value=6e-29 Score=185.50 Aligned_cols=154 Identities=23% Similarity=0.311 Sum_probs=134.1
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccc----cccCcee-----------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
.+|.+|||+-|||||+|++ +|.. ..|.. ++|..++ +++||||+||+ +..+..||+
T Consensus 11 ifkyiiigdmgvgkscllh-qfte--kkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyr----- 82 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLH-QFTE--KKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYR----- 82 (215)
T ss_pred eEEEEEEccccccHHHHHH-HHHH--HHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhc-----
Confidence 3679999999999999998 8887 44433 3333322 78899999998 677889999
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++-+.++|||++++.+++.+..|+...... ..++..++++|||.|++..|.|+.+++.+|+++.|+.|+|+||+
T Consensus 83 -----gaagalmvyditrrstynhlsswl~dar~l-tnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~sak 156 (215)
T KOG0097|consen 83 -----GAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAK 156 (215)
T ss_pred -----cccceeEEEEehhhhhhhhHHHHHhhhhcc-CCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEeccc
Confidence 999999999999999999999999987543 55778899999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810 194 LVYKTDELLVGIARQAGLNKKRNKL 218 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~~~~~~~ 218 (250)
+|.|+++.|-+.++++.+.......
T Consensus 157 tg~nvedafle~akkiyqniqdgsl 181 (215)
T KOG0097|consen 157 TGQNVEDAFLETAKKIYQNIQDGSL 181 (215)
T ss_pred ccCcHHHHHHHHHHHHHHhhhcCcc
Confidence 9999999999999999988776553
No 79
>KOG0395|consensus
Probab=99.96 E-value=4.5e-28 Score=196.91 Aligned_cols=151 Identities=31% Similarity=0.528 Sum_probs=135.1
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
.||+++|.+|||||+|+. +|.. ..|.+.|.|+++ .+.|+||+|++ ..+...+.+
T Consensus 4 ~kvvvlG~~gVGKSal~~-qf~~--~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~------- 73 (196)
T KOG0395|consen 4 YKVVVLGAGGVGKSALTI-QFLT--GRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIR------- 73 (196)
T ss_pred eEEEEECCCCCCcchhee-eecc--cccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhc-------
Confidence 459999999999999996 8988 889999999987 45689999964 444555666
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
++|++++||+++++.||+.+..++..|.+......+|+++||||+|+...|.|+.+++..++..++++|+|+||+.+
T Consensus 74 ---~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~ 150 (196)
T KOG0395|consen 74 ---NGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLN 150 (196)
T ss_pred ---cCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCC
Confidence 89999999999999999999999999977777788999999999999988999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhh
Q psy5810 196 YKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~~~~ 215 (250)
.+++++|..|++.+......
T Consensus 151 ~~v~~~F~~L~r~~~~~~~~ 170 (196)
T KOG0395|consen 151 YNVDEVFYELVREIRLPREG 170 (196)
T ss_pred cCHHHHHHHHHHHHHhhhcc
Confidence 99999999999988774443
No 80
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.96 E-value=9.3e-28 Score=191.63 Aligned_cols=141 Identities=21% Similarity=0.358 Sum_probs=117.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||+. ++.+ ..|...+.++.. .+++|||+|++ ..+++.+++
T Consensus 1 ~k~~i~G~~~~GKtsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------- 70 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIV-SYTT--NGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYP------- 70 (173)
T ss_pred CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccC-------
Confidence 479999999999999997 7877 455555555432 56789999986 556667777
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHHHHH
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKLAYA 182 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~~~~ 182 (250)
++|++|+|||+++++||+.+. .|+..+.+. .++.|+++||||+|+.. .+.++.+++..+++.
T Consensus 71 ---~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~ 145 (173)
T cd04130 71 ---DTDVFLLCFSVVNPSSFQNISEKWIPEIRKH--NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEK 145 (173)
T ss_pred ---CCcEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHH
Confidence 899999999999999999985 699888643 35799999999999853 467888999999999
Q ss_pred hCC-eEEEEecCCCCCHHHHHHHHHH
Q psy5810 183 WGV-KFVETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 183 ~~~-~~~evSa~~~~~I~~lf~~l~~ 207 (250)
.+. +|+|+||++|.|++++|+.++.
T Consensus 146 ~~~~~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 146 IGACEYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred hCCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 987 8999999999999999998874
No 81
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.96 E-value=4.9e-28 Score=203.87 Aligned_cols=150 Identities=19% Similarity=0.296 Sum_probs=121.2
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ +|++ ..|...+.++++ .+.+|||+|++ ..+...++.
T Consensus 1 ~KVvvlG~~gvGKTSLi~-r~~~--~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~------- 70 (247)
T cd04143 1 YRMVVLGASKVGKTAIVS-RFLG--GRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSIL------- 70 (247)
T ss_pred CEEEEECcCCCCHHHHHH-HHHc--CCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhc-------
Confidence 369999999999999998 8887 445444444442 56789999986 344555566
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh--------CCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-hCCe
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK--------YIGEKAVILVANKADLERRRQVTHSDGKKLAYA-WGVK 186 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~--------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~ 186 (250)
++|++|+|||+++++||+++..|+.++.... ...++|+++||||+|+...+.+..+++.+++.. .++.
T Consensus 71 ---~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~ 147 (247)
T cd04143 71 ---TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCA 147 (247)
T ss_pred ---cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCE
Confidence 8999999999999999999999999986542 235789999999999977677888888888764 4678
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 187 FVETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 187 ~~evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
|+++||++|.||+++|.+|+..+.....
T Consensus 148 ~~evSAktg~gI~elf~~L~~~~~~p~e 175 (247)
T cd04143 148 YFEVSAKKNSNLDEMFRALFSLAKLPNE 175 (247)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhccccc
Confidence 9999999999999999999987644433
No 82
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.96 E-value=8.7e-28 Score=189.20 Aligned_cols=146 Identities=25% Similarity=0.363 Sum_probs=121.2
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ ++.+. .+...+.++. ..+.+||++|+. ..++..++.
T Consensus 1 ~kv~v~G~~~~GKTtli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~------ 71 (164)
T smart00175 1 FKIILIGDSGVGKSSLLS-RFTDG--KFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYR------ 71 (164)
T ss_pred CEEEEECCCCCCHHHHHH-HHhcC--CCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhC------
Confidence 479999999999999998 78773 3333222221 156799999975 344555666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++.+|+.+..|+..+.++. .+++|+++|+||+|+.+.+.+..+++.++++..+++++|+||++
T Consensus 72 ----~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 146 (164)
T smart00175 72 ----GAVGALLVYDITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKT 146 (164)
T ss_pred ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCC
Confidence 8999999999999999999999999987653 35899999999999977677888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy5810 195 VYKTDELLVGIARQAGL 211 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~ 211 (250)
+.|++++|+++.+.+.+
T Consensus 147 ~~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 147 NTNVEEAFEELAREILK 163 (164)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=5.3e-28 Score=192.61 Aligned_cols=146 Identities=21% Similarity=0.341 Sum_probs=117.8
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccccc-ccccCcee---------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
+.+||+++|++|||||||++ +|.+ ..|. ..+.++++ .+.+||++|++ ..++..++.
T Consensus 3 ~~~kv~~vG~~~vGKTsli~-~~~~--~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~--- 76 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLR-AFLG--RSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELA--- 76 (169)
T ss_pred eEEEEEEECCCCCcHHHHHH-HHhC--CCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhh---
Confidence 45789999999999999998 8888 4444 33333321 46689999987 456677777
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEE
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVET 190 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~ev 190 (250)
++|++++|||++++.+|+.+..|+..+.. ..++|+++|+||+|+.+.+.+...+..++++.+++. ++++
T Consensus 77 -------~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (169)
T cd01892 77 -------ACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHF 146 (169)
T ss_pred -------cCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEE
Confidence 89999999999999999999999987632 247999999999999665555556677888888874 7999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy5810 191 SVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~ 211 (250)
||++|.|+.++|+.+++.+..
T Consensus 147 Sa~~~~~v~~lf~~l~~~~~~ 167 (169)
T cd01892 147 SSKLGDSSNELFTKLATAAQY 167 (169)
T ss_pred EeccCccHHHHHHHHHHHhhC
Confidence 999999999999999987753
No 84
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.96 E-value=1.5e-27 Score=190.13 Aligned_cols=143 Identities=24% Similarity=0.389 Sum_probs=118.5
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ +|.. ..|.+.+.++.. .+.+|||+|+. ..+++.++.
T Consensus 1 ~ki~i~G~~~~GKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------- 70 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLM-SYAN--DAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP------- 70 (174)
T ss_pred CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCC-------
Confidence 479999999999999998 8887 444444444332 46789999986 566777777
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHH
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYA 182 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~ 182 (250)
++|++++|||++++.+|+.+. .|+..+.+. .++.|+++||||+|+.+. +.++.+++..+++.
T Consensus 71 ---~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~--~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 145 (174)
T cd04135 71 ---MTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKE 145 (174)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHH
Confidence 899999999999999999996 688888654 578999999999998532 36888899999999
Q ss_pred hCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 183 WGV-KFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 183 ~~~-~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
.+. +|+|+||++|.||+++|+.++..+
T Consensus 146 ~~~~~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 146 IGAHCYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCEEEEecCCcCCCHHHHHHHHHHHh
Confidence 986 699999999999999999999865
No 85
>PLN03118 Rab family protein; Provisional
Probab=99.95 E-value=2.6e-27 Score=195.19 Aligned_cols=153 Identities=24% Similarity=0.255 Sum_probs=122.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCce-----------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
..+||+|+|++|||||||++ +|.+.. ....++.+.+. ..+.+|||+|++ ..++..+++
T Consensus 13 ~~~kv~ivG~~~vGKTsli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~------- 84 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLV-SFISSSVEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYR------- 84 (211)
T ss_pred cceEEEEECcCCCCHHHHHH-HHHhCCCCCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh-------
Confidence 35789999999999999998 777631 11222222211 156799999986 455566777
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHH-HHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAED-MLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++|+|||++++++|+++.. |...+.......+.|+++||||+|+...+.++.+++..++...+++|+|+||++
T Consensus 85 ---~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~ 161 (211)
T PLN03118 85 ---NAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKT 161 (211)
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 8999999999999999999976 766665443345689999999999987778888889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q psy5810 195 VYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~ 213 (250)
+.|++++|++|+..+....
T Consensus 162 ~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 162 RENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCHHHHHHHHHHHHHhhh
Confidence 9999999999999887643
No 86
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.95 E-value=1.8e-27 Score=187.48 Aligned_cols=144 Identities=26% Similarity=0.375 Sum_probs=120.4
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ ++.+ ..+...+.++.+ .+.+||++|++ ..++..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~------ 72 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVL-RFVK--NEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYR------ 72 (163)
T ss_pred eEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhc------
Confidence 689999999999999998 7887 333332222221 56799999986 444555666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++++|+.+..|+..+.+.. ...+|+++++||+|+...+.++.++...++..++++++++||++
T Consensus 73 ----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (163)
T cd01860 73 ----GAAAAIVVYDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKT 147 (163)
T ss_pred ----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCC
Confidence 8999999999999999999999999987653 36799999999999976677888899999999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy5810 195 VYKTDELLVGIARQA 209 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i 209 (250)
|.|+.++|+++++.+
T Consensus 148 ~~~v~~l~~~l~~~l 162 (163)
T cd01860 148 GENVNELFTEIAKKL 162 (163)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999875
No 87
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.95 E-value=2.7e-27 Score=186.10 Aligned_cols=142 Identities=25% Similarity=0.405 Sum_probs=117.1
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
||+++|++|||||||++ ++.+. .+...+.++. ..+.+|||+|+. ..++..+++
T Consensus 2 ki~liG~~~~GKSsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~------- 71 (161)
T cd01861 2 KLVFLGDQSVGKTSIIT-RFMYD--TFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIR------- 71 (161)
T ss_pred EEEEECCCCCCHHHHHH-HHHcC--CCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc-------
Confidence 69999999999999998 78773 3332222221 147799999986 344555566
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
++|++++|||++++++|+.+..|+..+.+.. ..+.|+++++||+|+.+.+.++.++...+++..+++++++||+++
T Consensus 72 ---~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (161)
T cd01861 72 ---DSSVAVVVYDITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAG 147 (161)
T ss_pred ---cCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCC
Confidence 8999999999999999999999999986543 247999999999999766778888899999998999999999999
Q ss_pred CCHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQ 208 (250)
Q Consensus 196 ~~I~~lf~~l~~~ 208 (250)
.|++++|+++.+.
T Consensus 148 ~~v~~l~~~i~~~ 160 (161)
T cd01861 148 HNVKELFRKIASA 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 88
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.95 E-value=5.8e-27 Score=191.30 Aligned_cols=154 Identities=23% Similarity=0.312 Sum_probs=122.9
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~ 116 (250)
||+++|++|||||||++ +|++ ..+...+.++. ..+.+||++|++ ..++..++.
T Consensus 1 kv~vvG~~~vGKTsll~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~-------- 69 (198)
T cd04147 1 RLVFMGAAGVGKTALIQ-RFLY--DTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQ-------- 69 (198)
T ss_pred CEEEECCCCCCHHHHHH-HHHh--CCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhh--------
Confidence 59999999999999998 7887 44544444443 156789999986 345556666
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC-CCccCHHHHHHHHH-HhCCeEEEEecCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER-RRQVTHSDGKKLAY-AWGVKFVETSVGL 194 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~-~~~~~~~evSa~~ 194 (250)
++|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+ .+.+..++..+... .++.+++++||++
T Consensus 70 --~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 147 (198)
T cd04147 70 --NSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKD 147 (198)
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCC
Confidence 8999999999999999999999999998776556899999999999855 45666666655543 4567899999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810 195 VYKTDELLVGIARQAGLNKKRNKLL 219 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~~~~~~ 219 (250)
|.|++++|+++++.+.......+..
T Consensus 148 g~gv~~l~~~l~~~~~~~~~~~~~~ 172 (198)
T cd04147 148 NENVLEVFKELLRQANLPYNLSPAL 172 (198)
T ss_pred CCCHHHHHHHHHHHhhcccccchhh
Confidence 9999999999999887655555543
No 89
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.95 E-value=5.2e-27 Score=184.09 Aligned_cols=144 Identities=22% Similarity=0.360 Sum_probs=119.5
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ ++.+. .+.+.+.++. ..+.+||++|++ ..+++.++.
T Consensus 1 ~ki~i~G~~~~GKStli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------ 71 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVL-RYVEN--KFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYR------ 71 (162)
T ss_pred CEEEEECCCCCCHHHHHH-HHHhC--CCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhc------
Confidence 479999999999999998 77763 3322221111 146789999986 566666776
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++++|+.+..|+.++.+... .++|+++|+||+|+...+.+..++..++++..+++++++||++
T Consensus 72 ----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 146 (162)
T cd04123 72 ----DADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKT 146 (162)
T ss_pred ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCC
Confidence 89999999999999999999999999876543 4799999999999987777888888889999999999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy5810 195 VYKTDELLVGIARQA 209 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i 209 (250)
+.|+.++|+++.+.+
T Consensus 147 ~~gi~~~~~~l~~~~ 161 (162)
T cd04123 147 GKGIEELFLSLAKRM 161 (162)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 90
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.95 E-value=1.5e-27 Score=189.83 Aligned_cols=144 Identities=11% Similarity=0.027 Sum_probs=111.9
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a 120 (250)
.+||+++|++|||||||++ ++..+ .....++.+.++. .+++|||+|++ +.+++.++. ++
T Consensus 9 ~~kv~i~G~~~~GKTsli~-~l~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----------~a 77 (168)
T cd04149 9 EMRILMLGLDAAGKTTILY-KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYT----------GT 77 (168)
T ss_pred ccEEEEECcCCCCHHHHHH-HHccCCCccccCCcccceEEEEECCEEEEEEECCCCHHHHHHHHHHhc----------cC
Confidence 3679999999999999998 77652 1122334443332 57899999986 456677777 89
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-----hCCeEEEEecCCC
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA-----WGVKFVETSVGLV 195 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~evSa~~~ 195 (250)
|++|+|||++++.+|+++..|+.++.......++|++||+||+|+.+ .++.+++..++.. ..++++++||++|
T Consensus 78 ~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 78 QGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred CEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 99999999999999999998888876543446789999999999864 3566777665431 2356899999999
Q ss_pred CCHHHHHHHHHH
Q psy5810 196 YKTDELLVGIAR 207 (250)
Q Consensus 196 ~~I~~lf~~l~~ 207 (250)
.|++++|++|.+
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999975
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.95 E-value=5.8e-27 Score=184.32 Aligned_cols=146 Identities=25% Similarity=0.388 Sum_probs=120.8
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ ++.. ..+...+.++. ..+.+|||+|++ ..++..+++
T Consensus 1 ~ki~~~G~~~~GKTsl~~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~------- 70 (164)
T cd04139 1 YKVIVVGAGGVGKSALTL-QFMY--DEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHR------- 70 (164)
T ss_pred CEEEEECCCCCCHHHHHH-HHHh--CCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhh-------
Confidence 379999999999999998 7876 44443333332 157789999986 344455555
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
.++++++|||++++.+|+.+..|+..+.......++|+++|+||+|+...+.....+...+++.++++++++||++|
T Consensus 71 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (164)
T cd04139 71 ---SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTR 147 (164)
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCC
Confidence 89999999999999999999999999877655568999999999999765567778888899999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQAG 210 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~ 210 (250)
.|+.++|+++++.+.
T Consensus 148 ~gi~~l~~~l~~~~~ 162 (164)
T cd04139 148 QNVEKAFYDLVREIR 162 (164)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998765
No 92
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.95 E-value=7.8e-27 Score=183.59 Aligned_cols=145 Identities=24% Similarity=0.299 Sum_probs=118.3
Q ss_pred EEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~ 116 (250)
+||+++|++|||||||++ ++.+.. ....++.+.+. ..+.+|||+|++ ..++..+++
T Consensus 1 ~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-------- 71 (161)
T cd01863 1 LKILLIGDSGVGKSSLLL-RFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYR-------- 71 (161)
T ss_pred CEEEEECCCCCCHHHHHH-HHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhC--------
Confidence 479999999999999998 787731 11222222221 257899999986 344455566
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
++|++++|||++++.+|+.+..|+..+.+.....+.|+++||||+|+.. +.+..++...+++..+++++++||++|.
T Consensus 72 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 148 (161)
T cd01863 72 --GAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRD 148 (161)
T ss_pred --CCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCC
Confidence 8999999999999999999999999998776667899999999999863 4667788899999999999999999999
Q ss_pred CHHHHHHHHHHH
Q psy5810 197 KTDELLVGIARQ 208 (250)
Q Consensus 197 ~I~~lf~~l~~~ 208 (250)
|++++|+++++.
T Consensus 149 gi~~~~~~~~~~ 160 (161)
T cd01863 149 GVQQAFEELVEK 160 (161)
T ss_pred CHHHHHHHHHHh
Confidence 999999998864
No 93
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.95 E-value=9e-27 Score=188.44 Aligned_cols=149 Identities=26% Similarity=0.366 Sum_probs=117.8
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCcc--ccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQR--CLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~ 115 (250)
.||+|+|++|||||||++ ++.. ..+.+.+.++.. .+.+|||+|++. ...+.++.
T Consensus 2 ~Ki~ivG~~g~GKStLl~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~------- 71 (187)
T cd04129 2 RKLVIVGDGACGKTSLLS-VFTL--GEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYS------- 71 (187)
T ss_pred eEEEEECCCCCCHHHHHH-HHHh--CCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcC-------
Confidence 479999999999999998 7765 333333333221 467899999862 23334455
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC----------CCccCHHHHHHHHHHhC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER----------RRQVTHSDGKKLAYAWG 184 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~----------~~~v~~~~~~~~~~~~~ 184 (250)
++|++++|||++++++|+.+. .|+..+.+. .+++|+++||||+|+.+ .+.++.+++..+++.++
T Consensus 72 ---~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~--~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (187)
T cd04129 72 ---KAHVILIGFAVDTPDSLENVRTKWIEEVRRY--CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG 146 (187)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC
Confidence 899999999999999999996 699988654 25799999999999853 35677788999999998
Q ss_pred C-eEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 185 V-KFVETSVGLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 185 ~-~~~evSa~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
. +|+||||++|.||+++|+++++.+...++.
T Consensus 147 ~~~~~e~Sa~~~~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 147 AKKYMECSALTGEGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred CcEEEEccCCCCCCHHHHHHHHHHHHhcccCc
Confidence 5 799999999999999999999887655443
No 94
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.95 E-value=3.4e-27 Score=187.85 Aligned_cols=147 Identities=14% Similarity=0.041 Sum_probs=114.7
Q ss_pred EEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCcE
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDV 122 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~ 122 (250)
||+++|++|||||||++ ++.+.. ....+|.+..+. .+.+|||+|+. +.++..+++ ++|+
T Consensus 1 ~vvlvG~~~~GKTsl~~-~l~~~~~~~~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~----------~ad~ 69 (169)
T cd04158 1 RVVTLGLDGAGKTTILF-KLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYL----------NTQA 69 (169)
T ss_pred CEEEECCCCCCHHHHHH-HHhcCCCCCcCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhc----------cCCE
Confidence 58999999999999998 787731 112233332222 57799999986 445566677 8999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC------CeEEEEecCCCC
Q psy5810 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG------VKFVETSVGLVY 196 (250)
Q Consensus 123 iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~------~~~~evSa~~~~ 196 (250)
+++|||++++++|+++..|+.++.+.....+.|++||+||+|+.+ .++.+++.++++..+ +.++++||++|.
T Consensus 70 ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 147 (169)
T cd04158 70 VVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGM 147 (169)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCC
Confidence 999999999999999999999997654455789999999999864 466777777664322 368899999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy5810 197 KTDELLVGIARQAGLN 212 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~ 212 (250)
||+++|++|++.+...
T Consensus 148 gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 148 GLYEGLDWLSRQLVAA 163 (169)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999877654
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.95 E-value=2.1e-26 Score=183.68 Aligned_cols=143 Identities=22% Similarity=0.358 Sum_probs=114.5
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
.||+++|++|||||||++ +|.+ ..|...+.+++. .+.+|||+|++ ..++..++.
T Consensus 2 ~ki~iiG~~~~GKTsl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------- 71 (175)
T cd01870 2 KKLVIVGDGACGKTCLLI-VFSK--DQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYP------- 71 (175)
T ss_pred cEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccC-------
Confidence 479999999999999997 8887 444433333321 56789999986 445555666
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHHHH
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLAYA 182 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~~~ 182 (250)
++|++++|||++++++|+.+. .|+..+.+. ..+.|+++|+||+|+.+. ..+...+++++++.
T Consensus 72 ---~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~ 146 (175)
T cd01870 72 ---DTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANK 146 (175)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHH
Confidence 899999999999999999985 588887553 358999999999998532 34667888899988
Q ss_pred hCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 183 WGV-KFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 183 ~~~-~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
.+. ++++|||++|.|++++|.++++.+
T Consensus 147 ~~~~~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 147 IGAFGYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred cCCcEEEEeccccCcCHHHHHHHHHHHh
Confidence 875 699999999999999999998754
No 96
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.95 E-value=1.6e-26 Score=183.51 Aligned_cols=148 Identities=22% Similarity=0.301 Sum_probs=119.3
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccc----cccCce-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ ++.+. .+.. +.+.++ ..+.+||++|++ ..++..+++
T Consensus 1 ~ki~viG~~~~GKSsl~~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~------ 71 (172)
T cd01862 1 LKVIILGDSGVGKTSLMN-QYVNK--KFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYR------ 71 (172)
T ss_pred CEEEEECCCCCCHHHHHH-HHhcC--CCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhc------
Confidence 479999999999999998 78773 3332 222211 146689999986 445555666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC---CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEEE
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY---IGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVET 190 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~ev 190 (250)
++|++|+|||++++++|+.+..|...+.+... ..++|+++|+||+|+...+.++.++...+++..+ .+++++
T Consensus 72 ----~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (172)
T cd01862 72 ----GADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFET 147 (172)
T ss_pred ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEE
Confidence 89999999999999999999999888765433 2379999999999997556677888888988887 789999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhh
Q psy5810 191 SVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~~ 212 (250)
||++|.|++++|+++++.+.+.
T Consensus 148 Sa~~~~gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 148 SAKEAINVEQAFETIARKALEQ 169 (172)
T ss_pred ECCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999988765
No 97
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.95 E-value=7.3e-27 Score=188.18 Aligned_cols=149 Identities=13% Similarity=0.040 Sum_probs=111.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a 120 (250)
.+||+++|++|||||||++ ++..+ .....++.+.++. .+.+||++|++ +.++..+|+ ++
T Consensus 17 ~~ki~ivG~~~~GKTsl~~-~l~~~~~~~~~pt~g~~~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~----------~a 85 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILY-KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ----------NT 85 (181)
T ss_pred ccEEEEECCCCCCHHHHHH-HHccCCCccccCCcceeEEEEEECCEEEEEEECCCCHHHHHHHHHHhc----------cC
Confidence 4679999999999999998 78652 1122344443332 57789999986 567778888 89
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-----CCeEEEEecCCC
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-----GVKFVETSVGLV 195 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~evSa~~~ 195 (250)
|++|+|||++++++|+++..|+..+.......++|++|||||+|+.+. +..++......-. .+.++++||++|
T Consensus 86 ~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g 163 (181)
T PLN00223 86 QGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGLHSLRQRHWYIQSTCATSG 163 (181)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCceEEEeccCCCC
Confidence 999999999999999999888888755434467999999999998653 3333333322111 123568999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy5810 196 YKTDELLVGIARQAGLN 212 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~ 212 (250)
+||.++|++|+..+..+
T Consensus 164 ~gv~e~~~~l~~~~~~~ 180 (181)
T PLN00223 164 EGLYEGLDWLSNNIANK 180 (181)
T ss_pred CCHHHHHHHHHHHHhhc
Confidence 99999999999877643
No 98
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.94 E-value=1.2e-26 Score=187.03 Aligned_cols=155 Identities=15% Similarity=0.057 Sum_probs=118.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccccc---ccccCce------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV---QTYHPDV------------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~---~~~~~~~------------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
+.+||+++|++|||||||++ ++... .+. ++.+.+. ..+.+|||+|++ ..++..+++
T Consensus 2 ~~~kv~~vG~~~~GKTsli~-~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~---- 74 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLY-RLKFN--EFVNTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTR---- 74 (183)
T ss_pred CceEEEEECCCCCCHHHHHH-HHhcC--CcCCcCCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhc----
Confidence 46889999999999999998 77763 332 2222221 157789999986 456666777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH--H----hCCe
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY--A----WGVK 186 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~--~----~~~~ 186 (250)
++|++++|||++++.+++.+..|+.++.+.....+.|+++|+||+|+.+ .+..++...+.. . .+++
T Consensus 75 ------~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~ 146 (183)
T cd04152 75 ------CTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLALHELSASTPWH 146 (183)
T ss_pred ------cCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCccccCCCCceE
Confidence 8999999999999999999999999887665556899999999999864 344455554442 1 1246
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810 187 FVETSVGLVYKTDELLVGIARQAGLNKKRNKLL 219 (250)
Q Consensus 187 ~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~ 219 (250)
++++||++|.|++++|++|++.+.+.++.....
T Consensus 147 ~~~~SA~~~~gi~~l~~~l~~~l~~~~~~~~~~ 179 (183)
T cd04152 147 VQPACAIIGEGLQEGLEKLYEMILKRRKMLRQQ 179 (183)
T ss_pred EEEeecccCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 889999999999999999999987666655444
No 99
>KOG0393|consensus
Probab=99.94 E-value=9.7e-27 Score=186.02 Aligned_cols=150 Identities=25% Similarity=0.381 Sum_probs=130.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+|++|+|+.++|||+|+. .|.. +.|...|.|++. .+.+|||+||+ ..+++..|.
T Consensus 3 ~~~K~VvVGDga~GKT~ll~-~~t~--~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~---- 75 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVGKTCLLI-SYTT--NAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYP---- 75 (198)
T ss_pred eeeEEEEECCCCcCceEEEE-Eecc--CcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCC----
Confidence 46889999999999999996 7777 688888888775 36689999997 457777888
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHH
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKL 179 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~ 179 (250)
++|+++++|++.+++||+++. .|+.++..+ .+++|+||||+|.||.. ...|+.+++..+
T Consensus 76 ------~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~--cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~l 147 (198)
T KOG0393|consen 76 ------QTDVFLLCFSVVSPESFENVKSKWIPEIKHH--CPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLEL 147 (198)
T ss_pred ------CCCEEEEEEEcCChhhHHHHHhhhhHHHHhh--CCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHH
Confidence 899999999999999999985 699999665 48999999999999953 236899999999
Q ss_pred HHHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 180 AYAWGV-KFVETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 180 ~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
+++.|. .|+||||++..|++++|+..++.++...+
T Consensus 148 A~~iga~~y~EcSa~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 148 AKEIGAVKYLECSALTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred HHHhCcceeeeehhhhhCCcHHHHHHHHHHHhcccc
Confidence 999995 59999999999999999999998886654
No 100
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.94 E-value=2e-27 Score=187.46 Aligned_cols=143 Identities=14% Similarity=0.086 Sum_probs=106.4
Q ss_pred EEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPD 121 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad 121 (250)
+||+++|++|||||||++ ++..+ ...+.++.+..+. .+.+|||+|++ ..++..+|+ ++|
T Consensus 1 ~kv~~~G~~~~GKTsli~-~l~~~~~~~~~pt~g~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~----------~ad 69 (159)
T cd04150 1 MRILMVGLDAAGKTTILY-KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ----------NTQ 69 (159)
T ss_pred CEEEEECCCCCCHHHHHH-HHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------CCC
Confidence 479999999999999998 77552 1112333333222 57899999986 456677778 999
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH-HHHH----HHhCCeEEEEecCCCC
Q psy5810 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG-KKLA----YAWGVKFVETSVGLVY 196 (250)
Q Consensus 122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~evSa~~~~ 196 (250)
++|+|||++++.+|+.+.+|+..+.......++|++|++||+|+.+. +..++. ..+. ...++.++++||++|.
T Consensus 70 ~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~ 147 (159)
T cd04150 70 GLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGLHSLRNRNWYIQATCATSGD 147 (159)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCccccCCCCEEEEEeeCCCCC
Confidence 99999999999999999998888765444457899999999998642 223332 2222 1223457899999999
Q ss_pred CHHHHHHHHHH
Q psy5810 197 KTDELLVGIAR 207 (250)
Q Consensus 197 ~I~~lf~~l~~ 207 (250)
||+++|++|.+
T Consensus 148 gv~~~~~~l~~ 158 (159)
T cd04150 148 GLYEGLDWLSN 158 (159)
T ss_pred CHHHHHHHHhc
Confidence 99999999864
No 101
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.94 E-value=3.2e-27 Score=189.16 Aligned_cols=146 Identities=12% Similarity=0.053 Sum_probs=109.2
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a 120 (250)
.+||+++|++|||||||++ ++..+ .....+|.+..+. .+.+|||+|++ +.++..+++ ++
T Consensus 13 ~~ki~l~G~~~~GKTsL~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~----------~a 81 (175)
T smart00177 13 EMRILMVGLDAAGKTTILY-KLKLGESVTTIPTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHYYT----------NT 81 (175)
T ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCCCCcCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhC----------CC
Confidence 4789999999999999998 78652 1122333333222 57789999986 456677778 89
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecCCC
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVGLV 195 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~~ 195 (250)
|++|+|||++++++|+.+.+|+..+.+.....++|++|||||+|+.+. ++.++..+.. +...+.++++||++|
T Consensus 82 d~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 159 (175)
T smart00177 82 QGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEKLGLHSIRDRNWYIQPTCATSG 159 (175)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence 999999999999999999999988865433467899999999998653 2333332222 122345779999999
Q ss_pred CCHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQA 209 (250)
Q Consensus 196 ~~I~~lf~~l~~~i 209 (250)
.|+.++|++|.+.+
T Consensus 160 ~gv~e~~~~l~~~~ 173 (175)
T smart00177 160 DGLYEGLTWLSNNL 173 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 102
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.94 E-value=2.5e-27 Score=187.80 Aligned_cols=139 Identities=16% Similarity=0.157 Sum_probs=111.7
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a 120 (250)
|+++|++|||||||++ +|.+. .+...+.++++ .+.+|||+|++ +.++..+++ ++
T Consensus 2 i~ivG~~~vGKTsli~-~~~~~--~~~~~~~pt~g~~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~----------~a 68 (164)
T cd04162 2 ILVLGLDGAGKTSLLH-SLSSE--RSLESVVPTTGFNSVAIPTQDAIMELLEIGGSQNLRKYWKRYLS----------GS 68 (164)
T ss_pred EEEECCCCCCHHHHHH-HHhcC--CCcccccccCCcceEEEeeCCeEEEEEECCCCcchhHHHHHHHh----------hC
Confidence 8999999999999998 88873 34333434432 57899999986 566677777 89
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCH----HHHHHHHHHhCCeEEEEecCC--
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH----SDGKKLAYAWGVKFVETSVGL-- 194 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~----~~~~~~~~~~~~~~~evSa~~-- 194 (250)
|++|+|||.+++.+|+.++.|+.++.+. ..++|+++||||+|+...+.++. .++..++++.++.++++||++
T Consensus 69 d~ii~V~D~t~~~s~~~~~~~l~~~~~~--~~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~ 146 (164)
T cd04162 69 QGLIFVVDSADSERLPLARQELHQLLQH--PPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDG 146 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhC--CCCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCC
Confidence 9999999999999999999999988543 26899999999999976655432 234566777788899999998
Q ss_pred ----CCCHHHHHHHHHH
Q psy5810 195 ----VYKTDELLVGIAR 207 (250)
Q Consensus 195 ----~~~I~~lf~~l~~ 207 (250)
++||+++|..++.
T Consensus 147 s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 147 SPSRMEAVKDLLSQLIN 163 (164)
T ss_pred ChhHHHHHHHHHHHHhc
Confidence 9999999999874
No 103
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.94 E-value=6.1e-26 Score=182.01 Aligned_cols=149 Identities=26% Similarity=0.380 Sum_probs=122.3
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
.||+++|++|||||||++ ++.+ ..+...+.++. ..+.+|||+|+. ..++..++.
T Consensus 2 ~kv~l~G~~g~GKTtl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~------- 71 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTV-QFVE--GHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSI------- 71 (180)
T ss_pred eEEEEECCCCCCHHHHHH-HHHh--CCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHh-------
Confidence 479999999999999998 8887 33433333322 146789999986 344555555
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
.++++++|||+++..+|+.+..|+..+.+.....+.|+++|+||+|+...+.+..++...+++.++++++++||+++
T Consensus 72 ---~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 148 (180)
T cd04137 72 ---GIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSAREN 148 (180)
T ss_pred ---hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 89999999999999999999999888877655567899999999999766777777888888888999999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q psy5810 196 YKTDELLVGIARQAGLNK 213 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~~ 213 (250)
.|+.++|.++.+.+....
T Consensus 149 ~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 149 ENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999998876543
No 104
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.94 E-value=3.9e-26 Score=184.08 Aligned_cols=149 Identities=12% Similarity=0.058 Sum_probs=111.0
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a 120 (250)
.+||+++|++|||||||++ ++..+ .....+|.+..+. .+.+|||+|++ +.++..+++ ++
T Consensus 17 ~~kv~lvG~~~vGKTsli~-~~~~~~~~~~~~T~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~----------~a 85 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILY-KLKLGEVVTTIPTIGFNVETVEYKNLKFTMWDVGGQDKLRPLWRHYYQ----------NT 85 (182)
T ss_pred ccEEEEEcCCCCCHHHHHH-HHhcCCccccCCccccceEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------CC
Confidence 4679999999999999998 77552 1122344443322 57789999986 556777888 89
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecCCC
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVGLV 195 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~~ 195 (250)
|++|+|||++++++|+++..|+.++.+.....++|++||+||.|+.+ .++.++..... ....+.++++||++|
T Consensus 86 d~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg 163 (182)
T PTZ00133 86 NGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPN--AMSTTEVTEKLGLHSVRQRNWYIQGCCATTA 163 (182)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC--CCCHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence 99999999999999999988888775543345789999999999864 22333332221 122245779999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy5810 196 YKTDELLVGIARQAGLN 212 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~ 212 (250)
.|++++|++|.+.+.++
T Consensus 164 ~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 164 QGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999877654
No 105
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.94 E-value=1.4e-25 Score=177.82 Aligned_cols=145 Identities=19% Similarity=0.284 Sum_probs=118.0
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
..||+++|++|||||||++ ++.. ..+.+.++++++ .+.+||++|+. ...+..++.
T Consensus 7 ~~~v~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~----- 78 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVR-RFTQ--GLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYR----- 78 (169)
T ss_pred eeEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhc-----
Confidence 4779999999999999998 7876 333333333321 46789999975 344455566
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
.+|++++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+....+.+....+++++||+
T Consensus 79 -----~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~ 152 (169)
T cd04114 79 -----SANALILTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAK 152 (169)
T ss_pred -----CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCC
Confidence 899999999999999999999999888654 34579999999999998777788777888888878889999999
Q ss_pred CCCCHHHHHHHHHHHH
Q psy5810 194 LVYKTDELLVGIARQA 209 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i 209 (250)
+|.|+.++|+++.+.+
T Consensus 153 ~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 153 ESDNVEKLFLDLACRL 168 (169)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999999764
No 106
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.94 E-value=6.6e-26 Score=177.45 Aligned_cols=143 Identities=28% Similarity=0.457 Sum_probs=118.5
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~ 116 (250)
||+|+|++|||||||++ ++.+. .+...+.++.. .+.+||++|++ ..+...++.
T Consensus 1 ki~i~G~~~~GKTsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~-------- 69 (160)
T cd00876 1 KVVVLGAGGVGKSAITI-QFVKG--TFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIR-------- 69 (160)
T ss_pred CEEEECCCCCCHHHHHH-HHHhC--CCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHh--------
Confidence 59999999999999998 77763 23333333321 57789999976 444445555
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
++|++++|||++++++++++..|...+.+.......|+++|+||+|+...+.++.+++.++++.++.+++++||+++.
T Consensus 70 --~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~ 147 (160)
T cd00876 70 --QGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNI 147 (160)
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCC
Confidence 899999999999999999999999988776544689999999999997767788899999999999999999999999
Q ss_pred CHHHHHHHHHHH
Q psy5810 197 KTDELLVGIARQ 208 (250)
Q Consensus 197 ~I~~lf~~l~~~ 208 (250)
|++++|++|++.
T Consensus 148 ~i~~l~~~l~~~ 159 (160)
T cd00876 148 NIDEVFKLLVRE 159 (160)
T ss_pred CHHHHHHHHHhh
Confidence 999999999875
No 107
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.94 E-value=6.6e-26 Score=180.93 Aligned_cols=146 Identities=12% Similarity=0.086 Sum_probs=111.8
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~ 118 (250)
...+||+++|++|||||||++ ++.+. .....++.+..+. .+.+|||+|++ +.++..+++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~-~l~~~~~~~~~~t~g~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~---------- 80 (173)
T cd04154 12 EREMRILILGLDNAGKTTILK-KLLGEDIDTISPTLGFQIKTLEYEGYKLNIWDVGGQKTLRPYWRNYFE---------- 80 (173)
T ss_pred CCccEEEEECCCCCCHHHHHH-HHccCCCCCcCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC----------
Confidence 345679999999999999998 78764 1122233332222 56789999997 445566666
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-----HhCCeEEEEecC
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-----AWGVKFVETSVG 193 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~ 193 (250)
++|++++|||++++.+|+++..|+..+.+.....++|+++|+||+|+.+. ...++...+.. ..+++++++||+
T Consensus 81 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 158 (173)
T cd04154 81 STDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGA--LSEEEIREALELDKISSHHWRIQPCSAV 158 (173)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHHHHHHhCccccCCCceEEEeccCC
Confidence 89999999999999999999999888865444468999999999998653 24555555543 345789999999
Q ss_pred CCCCHHHHHHHHHH
Q psy5810 194 LVYKTDELLVGIAR 207 (250)
Q Consensus 194 ~~~~I~~lf~~l~~ 207 (250)
+|.|++++|++++.
T Consensus 159 ~g~gi~~l~~~l~~ 172 (173)
T cd04154 159 TGEGLLQGIDWLVD 172 (173)
T ss_pred CCcCHHHHHHHHhc
Confidence 99999999999874
No 108
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.94 E-value=1.1e-25 Score=184.07 Aligned_cols=133 Identities=11% Similarity=0.080 Sum_probs=107.3
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------------EEEEEeCCCCc--cccCCCcccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------------FIVYSDTNHTQ--RCLTPMPFCS 109 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------------~i~i~Dt~g~~--~~~~~~~~~~ 109 (250)
+||+++|++|||||||++ +|++ ..|...+.++++ .+++|||+|++ +.+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~-~~~~--~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr- 76 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVH-LICK--NQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYN- 76 (202)
T ss_pred CEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhC-
Confidence 479999999999999998 8887 444444433332 46799999986 567778888
Q ss_pred ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh------------------CCCCCcEEEEeeCCCccCCCcc
Q psy5810 110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK------------------YIGEKAVILVANKADLERRRQV 171 (250)
Q Consensus 110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~------------------~~~~~piilv~nK~Dl~~~~~v 171 (250)
++|++|+|||++++.||+++..|+.++.+.. ...++|++|||||+|+.+++.+
T Consensus 77 ---------~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~ 147 (202)
T cd04102 77 ---------QVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES 147 (202)
T ss_pred ---------cCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc
Confidence 9999999999999999999999999997642 2347899999999999776766
Q ss_pred CHHH----HHHHHHHhCCeEEEEecCCCCC
Q psy5810 172 THSD----GKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 172 ~~~~----~~~~~~~~~~~~~evSa~~~~~ 197 (250)
+.+. ...+|++.+++.++.++.++..
T Consensus 148 ~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~ 177 (202)
T cd04102 148 SGNLVLTARGFVAEQGNAEEINLNCTNGRL 177 (202)
T ss_pred chHHHhhHhhhHHHhcCCceEEEecCCccc
Confidence 6654 4457888999999999997654
No 109
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.93 E-value=2.6e-25 Score=176.37 Aligned_cols=141 Identities=26% Similarity=0.405 Sum_probs=112.5
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCcc--ccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQR--CLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~ 115 (250)
+||+++|++|||||||++ +|.+ ..+...+.++.. .+++|||+|++. .+...+++
T Consensus 1 iki~i~G~~~~GKSsli~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~------- 70 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLI-SYTT--GKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYP------- 70 (171)
T ss_pred CEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcC-------
Confidence 589999999999999998 7887 333222222221 578999999873 44555555
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCC-----------ccCHHHHHHHHHHh
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRR-----------QVTHSDGKKLAYAW 183 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-----------~v~~~~~~~~~~~~ 183 (250)
.+|++++|||++++.+|.... .|+..+... ..+.|+++||||+|+.+.. .+..+++.+++..+
T Consensus 71 ---~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 145 (171)
T cd00157 71 ---NTDVFLICFSVDSPSSFENVKTKWIPEIRHY--CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEI 145 (171)
T ss_pred ---CCCEEEEEEECCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHh
Confidence 899999999999999998875 588877553 2489999999999985433 45678888999988
Q ss_pred CC-eEEEEecCCCCCHHHHHHHHHH
Q psy5810 184 GV-KFVETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 184 ~~-~~~evSa~~~~~I~~lf~~l~~ 207 (250)
++ +|+++||++|.|++++|.++++
T Consensus 146 ~~~~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 146 GAIGYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred CCeEEEEeecCCCCCHHHHHHHHhh
Confidence 88 8999999999999999999875
No 110
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.93 E-value=1.9e-25 Score=177.07 Aligned_cols=145 Identities=18% Similarity=0.181 Sum_probs=107.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce-------------eEEEEEeCCCCcc--ccCCCccccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-------------FFIVYSDTNHTQR--CLTPMPFCSQVENFVQ 116 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-------------~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~ 116 (250)
+||+++|++|||||||++ +|.+ +.|...+..+. ..+.+|||+|++. ..+..++.
T Consensus 1 ~kv~ivG~~~vGKTsl~~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-------- 69 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIM-SLVS--EEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIR-------- 69 (166)
T ss_pred CEEEEECCCCCCHHHHHH-HHHh--CcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcc--------
Confidence 479999999999999998 7877 44433322211 1577999999863 22333444
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHHHHHHHHHHhC--CeEEEEe
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQV--THSDGKKLAYAWG--VKFVETS 191 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~--~~~~evS 191 (250)
++|++++|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+.+.. ..++...+++.++ .+++++|
T Consensus 70 --~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~S 145 (166)
T cd01893 70 --KANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECS 145 (166)
T ss_pred --cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEec
Confidence 899999999999999999985 6888775532 48999999999999664432 1233444444443 3799999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy5810 192 VGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~ 211 (250)
|+++.|++++|+.+.+.+..
T Consensus 146 a~~~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 146 AKTLINVSEVFYYAQKAVLH 165 (166)
T ss_pred cccccCHHHHHHHHHHHhcC
Confidence 99999999999999887653
No 111
>KOG4252|consensus
Probab=99.93 E-value=1.8e-26 Score=178.60 Aligned_cols=152 Identities=17% Similarity=0.253 Sum_probs=133.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
.-+|++|+|..+|||||+|. +||. +.|...|..+++ .+.+|||+||+ ..++..||+
T Consensus 19 ~aiK~vivGng~VGKssmiq-ryCk--gifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyr---- 91 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQ-RYCK--GIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYR---- 91 (246)
T ss_pred hhEEEEEECCCccchHHHHH-HHhc--cccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhc----
Confidence 34789999999999999995 9998 555555555544 34469999997 677889999
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
+|.+.+|||+.+|+.||+.+..|.+++.. ....+|.++|-||+|+.++.+++..+++.+++..+..++.+|+
T Consensus 92 ------gaqa~vLVFSTTDr~SFea~~~w~~kv~~--e~~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSv 163 (246)
T KOG4252|consen 92 ------GAQASVLVFSTTDRYSFEATLEWYNKVQK--ETERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSV 163 (246)
T ss_pred ------cccceEEEEecccHHHHHHHHHHHHHHHH--HhccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhh
Confidence 99999999999999999999999999954 5689999999999999888999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKRN 216 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~~ 216 (250)
+...|+.++|.+|+..+.+...++
T Consensus 164 ked~NV~~vF~YLaeK~~q~~kq~ 187 (246)
T KOG4252|consen 164 KEDFNVMHVFAYLAEKLTQQKKQS 187 (246)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988776663
No 112
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.93 E-value=5.5e-25 Score=171.22 Aligned_cols=141 Identities=27% Similarity=0.362 Sum_probs=115.2
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccc----cccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|++|||||||++ ++.+. .+.. +.+.+.. .+.+||++|++ ..++..++.
T Consensus 1 ~~i~~~G~~~~GKStl~~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~------ 71 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLL-RFVDG--KFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYR------ 71 (159)
T ss_pred CeEEEECCCCCCHHHHHH-HHHhC--cCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhc------
Confidence 479999999999999998 78773 3332 2232222 56789999986 344455555
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|+|++++++++.+..|+..+... .....|+++++||+|+.....+..++..+++...+.+++++||++
T Consensus 72 ----~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~ 146 (159)
T cd00154 72 ----GAHGAILVYDITNRESFENLDKWLKELKEY-APENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKT 146 (159)
T ss_pred ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCC
Confidence 899999999999999999999999988665 235799999999999965567788899999998899999999999
Q ss_pred CCCHHHHHHHHH
Q psy5810 195 VYKTDELLVGIA 206 (250)
Q Consensus 195 ~~~I~~lf~~l~ 206 (250)
+.|++++|.+++
T Consensus 147 ~~~i~~~~~~i~ 158 (159)
T cd00154 147 GENVEELFQSLA 158 (159)
T ss_pred CCCHHHHHHHHh
Confidence 999999999986
No 113
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.92 E-value=1.4e-25 Score=178.35 Aligned_cols=144 Identities=14% Similarity=0.056 Sum_probs=108.3
Q ss_pred EEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCcE
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDV 122 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~ 122 (250)
+|+++|++|||||||++ ++.+. .....++.+.+.. .+.+||++|++ +.++..+++ ++|+
T Consensus 1 ~i~~~G~~~~GKTsl~~-~l~~~~~~~~~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----------~a~~ 69 (167)
T cd04161 1 TLLTVGLDNAGKTTLVS-ALQGEIPKKVAPTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYA----------EAHG 69 (167)
T ss_pred CEEEECCCCCCHHHHHH-HHhCCCCccccCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHc----------CCCE
Confidence 38999999999999998 78773 1223334333322 57799999986 566777777 8999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCH-H---HHHHHHHHhC--CeEEEEecCCC-
Q psy5810 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH-S---DGKKLAYAWG--VKFVETSVGLV- 195 (250)
Q Consensus 123 iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~-~---~~~~~~~~~~--~~~~evSa~~~- 195 (250)
+|+|||++++.+|+++..|+..+.+.....++|+++|+||+|+++.+.... . ....++++.+ +.+++|||++|
T Consensus 70 ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~ 149 (167)
T cd04161 70 LVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGL 149 (167)
T ss_pred EEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCC
Confidence 999999999999999999999987654446899999999999976442111 1 1223343333 45788999998
Q ss_pred -----CCHHHHHHHHHH
Q psy5810 196 -----YKTDELLVGIAR 207 (250)
Q Consensus 196 -----~~I~~lf~~l~~ 207 (250)
.|+.+.|+||..
T Consensus 150 ~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 150 GKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCccccCHHHHHHHHhc
Confidence 899999999974
No 114
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.92 E-value=2e-24 Score=178.42 Aligned_cols=150 Identities=17% Similarity=0.237 Sum_probs=118.3
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQ 110 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~ 110 (250)
....+||+++|++|||||||++ ++.. ..+...+.+++ ..+.+|||+|++ ..++..++.
T Consensus 6 ~~~~~kv~liG~~g~GKTtLi~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~-- 80 (215)
T PTZ00132 6 EVPEFKLILVGDGGVGKTTFVK-RHLT--GEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYI-- 80 (215)
T ss_pred CCCCceEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhc--
Confidence 3344789999999999999997 6766 33333333332 167789999986 455566666
Q ss_pred cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET 190 (250)
Q Consensus 111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev 190 (250)
+++++++|||++++.+|..+..|+..+... ..++|++++|||+|+.+ +.+..+ ...+++..++.|+++
T Consensus 81 --------~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~i~lv~nK~Dl~~-~~~~~~-~~~~~~~~~~~~~e~ 148 (215)
T PTZ00132 81 --------KGQCAIIMFDVTSRITYKNVPNWHRDIVRV--CENIPIVLVGNKVDVKD-RQVKAR-QITFHRKKNLQYYDI 148 (215)
T ss_pred --------cCCEEEEEEECcCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECccCcc-ccCCHH-HHHHHHHcCCEEEEE
Confidence 899999999999999999999999998654 35789999999999864 334433 346777888999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 191 SVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
||++|.|+++.|.++++.+.....
T Consensus 149 Sa~~~~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 149 SAKSNYNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred eCCCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999998876544
No 115
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.92 E-value=1.9e-25 Score=175.61 Aligned_cols=142 Identities=15% Similarity=0.043 Sum_probs=105.9
Q ss_pred EEEEEcCCCCchhhhchhhhcccc---ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQV---ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~---~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a 120 (250)
+|+++|++|||||||++ ++.+.. ..+.++.+.+.. .+.+|||+|++ +.++..+++ ++
T Consensus 1 ~i~~vG~~~~GKTsl~~-~l~~~~~~~~~~~~t~g~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----------~~ 69 (162)
T cd04157 1 NILVVGLDNSGKTTIIN-QLKPENAQSQIIVPTVGFNVESFEKGNLSFTAFDMSGQGKYRGLWEHYYK----------NI 69 (162)
T ss_pred CEEEECCCCCCHHHHHH-HHcccCCCcceecCccccceEEEEECCEEEEEEECCCCHhhHHHHHHHHc----------cC
Confidence 38999999999999998 788741 123344443332 57899999986 456666777 89
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecC
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVG 193 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~ 193 (250)
|++|+|+|++++.+|+.+..|+..+.+... ..++|+++|+||+|+.+.. ..++..... ....++++++||+
T Consensus 70 d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l~~~~~~~~~~~~~~~Sa~ 147 (162)
T cd04157 70 QGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLLGLENIKDKPWHIFASNAL 147 (162)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHhCCccccCceEEEEEeeCC
Confidence 999999999999999999999988865422 2579999999999986532 222222211 1123458999999
Q ss_pred CCCCHHHHHHHHHH
Q psy5810 194 LVYKTDELLVGIAR 207 (250)
Q Consensus 194 ~~~~I~~lf~~l~~ 207 (250)
+|.|++++|++|.+
T Consensus 148 ~g~gv~~~~~~l~~ 161 (162)
T cd04157 148 TGEGLDEGVQWLQA 161 (162)
T ss_pred CCCchHHHHHHHhc
Confidence 99999999999875
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.92 E-value=6.3e-25 Score=177.66 Aligned_cols=146 Identities=16% Similarity=0.141 Sum_probs=113.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+..||+++|++|||||||++ ++.+. ...+.++.+++.. .+.+||++|++ +.++..++. +
T Consensus 18 ~~~ki~ilG~~~~GKStLi~-~l~~~~~~~~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~~~----------~ 86 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLH-MLKDDRLAQHVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDYFP----------E 86 (190)
T ss_pred CCCEEEEECCCCCCHHHHHH-HHhcCCCcccCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhc----------c
Confidence 35669999999999999998 77763 1123334444433 56789999986 444555666 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH----------------h
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA----------------W 183 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----------------~ 183 (250)
+|++++|+|+++..+|+....|+.++.+.....+.|+++++||+|+.. .++.++..++... .
T Consensus 87 ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T cd00879 87 VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCce
Confidence 999999999999999999999999887654456799999999999854 5667777766642 2
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 184 GVKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 184 ~~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
.+++++|||++|.|++++|++|++.
T Consensus 165 ~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred eEEEEEeEecCCCChHHHHHHHHhh
Confidence 2468999999999999999999865
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.92 E-value=7.2e-25 Score=175.26 Aligned_cols=144 Identities=16% Similarity=0.111 Sum_probs=108.8
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a 120 (250)
..||+++|++|||||||++ ++..+ .....++.+.++. .+.+|||+|++ ...+..+++ ++
T Consensus 15 ~~kv~~~G~~~~GKTsl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~----------~~ 83 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILY-QFLLGEVVHTSPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYT----------NT 83 (174)
T ss_pred ccEEEEECCCCCCHHHHHH-HHccCCCCCcCCccccceEEEEECCeEEEEEECCCCHHHHHHHHHHhh----------cC
Confidence 4579999999999999998 78763 1112333333332 57889999986 445566676 89
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH-HHHH----HHhCCeEEEEecCCC
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG-KKLA----YAWGVKFVETSVGLV 195 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~----~~~~~~~~evSa~~~ 195 (250)
|++++|+|++++++|..+..|+..+.+.....++|+++++||+|+.+ .++.++. ..+. +..+++++++||++|
T Consensus 84 d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~--~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 84 DAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC--CCCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 99999999999999999988888886654446799999999999864 2334432 2222 234567999999999
Q ss_pred CCHHHHHHHHHH
Q psy5810 196 YKTDELLVGIAR 207 (250)
Q Consensus 196 ~~I~~lf~~l~~ 207 (250)
.||+++|++|++
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999974
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.92 E-value=6.3e-25 Score=172.53 Aligned_cols=142 Identities=15% Similarity=0.074 Sum_probs=105.4
Q ss_pred EEEEEcCCCCchhhhchhhhccccc-cccccccCcee--------EEEEEeCCCCc--cccCCCccccccccccccCCCc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF--------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPD 121 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~--------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad 121 (250)
+|+++|++|||||||++ +|.+... ...++.+.++. .+.+|||+|++ ...+..++. ++|
T Consensus 1 ~i~i~G~~~~GKTsl~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~----------~~~ 69 (160)
T cd04156 1 QVLLLGLDSAGKSTLLY-KLKHAELVTTIPTVGFNVEMLQLEKHLSLTVWDVGGQEKMRTVWKCYLE----------NTD 69 (160)
T ss_pred CEEEEcCCCCCHHHHHH-HHhcCCcccccCccCcceEEEEeCCceEEEEEECCCCHhHHHHHHHHhc----------cCC
Confidence 48999999999999998 7877411 11223322221 57789999986 344555666 899
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH------HHHHhCCeEEEEecCCC
Q psy5810 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK------LAYAWGVKFVETSVGLV 195 (250)
Q Consensus 122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~------~~~~~~~~~~evSa~~~ 195 (250)
++|+|+|.+++.+|+.+..|+.++.+.....+.|+++|+||+|+... ...++... ++...+++++++||++|
T Consensus 70 ~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~ 147 (160)
T cd04156 70 GLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKLKKYCSDRDWYVQPCSAVTG 147 (160)
T ss_pred EEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCCcccCCCCcEEEEecccccC
Confidence 99999999999999999999998876544468999999999998542 22333322 22223457999999999
Q ss_pred CCHHHHHHHHHH
Q psy5810 196 YKTDELLVGIAR 207 (250)
Q Consensus 196 ~~I~~lf~~l~~ 207 (250)
.|++++|++|++
T Consensus 148 ~gv~~~~~~i~~ 159 (160)
T cd04156 148 EGLAEAFRKLAS 159 (160)
T ss_pred CChHHHHHHHhc
Confidence 999999999864
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.92 E-value=1e-24 Score=171.41 Aligned_cols=142 Identities=14% Similarity=0.087 Sum_probs=103.5
Q ss_pred EEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCcE
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDV 122 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~ 122 (250)
||+++|++|||||||++ ++..+ .....++.+.++. .+.+|||+|++ +.++..++. ++|+
T Consensus 1 kv~lvG~~~~GKTsl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~~~~ 69 (158)
T cd04151 1 RILILGLDNAGKTTILY-RLQLGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYS----------NTDA 69 (158)
T ss_pred CEEEECCCCCCHHHHHH-HHccCCCcCcCCccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhc----------CCCE
Confidence 58999999999999998 77653 1112233333321 67899999986 555666777 8999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-HH----HHhCCeEEEEecCCCCC
Q psy5810 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-LA----YAWGVKFVETSVGLVYK 197 (250)
Q Consensus 123 iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~evSa~~~~~ 197 (250)
+++|+|++++.++....+|+..+.+.....+.|+++|+||+|+.+.. ...+... +. ...+++++++||++|.|
T Consensus 70 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd04151 70 IIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEG 147 (158)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCC
Confidence 99999999999998877777665443334579999999999986432 2232222 11 11235699999999999
Q ss_pred HHHHHHHHHH
Q psy5810 198 TDELLVGIAR 207 (250)
Q Consensus 198 I~~lf~~l~~ 207 (250)
+.++|++|++
T Consensus 148 i~~l~~~l~~ 157 (158)
T cd04151 148 LDEGMDWLVN 157 (158)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 120
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.92 E-value=2.1e-24 Score=170.76 Aligned_cols=142 Identities=12% Similarity=0.129 Sum_probs=107.4
Q ss_pred EEEEEcCCCCchhhhchhhhcccc--------ccccccccCce-------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQV--------ENFVQTYHPDV-------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~--------~~~~~~~~~~~-------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
+|+++|++|||||||++ ++.... ....++.+..+ ..+.+|||+|++ ..++..++.
T Consensus 1 ~i~~vG~~~~GKstLi~-~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------- 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLE-QLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYA------- 72 (167)
T ss_pred CEEEEecCCCCHHHHHH-HHhhhcccccCCcccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhC-------
Confidence 48999999999999998 676421 11222323222 267899999986 344445555
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-------hCCeEE
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA-------WGVKFV 188 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-------~~~~~~ 188 (250)
++|++++|+|.+++++++.+..|+..+.+.....++|+++++||+|+.+ .+..++..++.+. .+++++
T Consensus 73 ---~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (167)
T cd04160 73 ---ECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPD--ALSVEEIKEVFQDKAEEIGRRDCLVL 147 (167)
T ss_pred ---CCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEcccccc--CCCHHHHHHHhccccccccCCceEEE
Confidence 8999999999999999999999999887655556899999999999865 3444555555433 245799
Q ss_pred EEecCCCCCHHHHHHHHHH
Q psy5810 189 ETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~ 207 (250)
++||++|.|+++++++|++
T Consensus 148 ~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 148 PVSALEGTGVREGIEWLVE 166 (167)
T ss_pred EeeCCCCcCHHHHHHHHhc
Confidence 9999999999999999974
No 121
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.91 E-value=1.9e-24 Score=169.61 Aligned_cols=142 Identities=14% Similarity=0.041 Sum_probs=109.2
Q ss_pred EEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCcE
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDV 122 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~ 122 (250)
||+++|.+|||||||++ ++++.. ....++.+.+.. .+.+||++|++ ..++..++. ++|+
T Consensus 1 ki~iiG~~~~GKssli~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----------~~~~ 69 (158)
T cd00878 1 RILILGLDGAGKTTILY-KLKLGEVVTTIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYE----------NTNG 69 (158)
T ss_pred CEEEEcCCCCCHHHHHH-HHhcCCCCCCCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhc----------cCCE
Confidence 59999999999999998 787742 223334444332 67899999986 445555666 8999
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-----HhCCeEEEEecCCCCC
Q psy5810 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-----AWGVKFVETSVGLVYK 197 (250)
Q Consensus 123 iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~~~~~ 197 (250)
+++|||++++++|..+..|+..+.+.....+.|+++|+||+|+.... +.++..+... ...++++++||++|.|
T Consensus 70 ~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 147 (158)
T cd00878 70 IIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDG 147 (158)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCC
Confidence 99999999999999999999888765545689999999999986533 3334433322 2346799999999999
Q ss_pred HHHHHHHHHH
Q psy5810 198 TDELLVGIAR 207 (250)
Q Consensus 198 I~~lf~~l~~ 207 (250)
+.++|++|..
T Consensus 148 v~~~~~~l~~ 157 (158)
T cd00878 148 LDEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 122
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.91 E-value=5.4e-24 Score=171.83 Aligned_cols=146 Identities=14% Similarity=0.085 Sum_probs=112.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+.+||+++|.+|||||||++ ++.+.. ....++.+++.+ .+.+||++|+. +.++..++. +
T Consensus 16 ~~~~i~ivG~~~~GKTsli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~----------~ 84 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLH-MLKNDRLAQHQPTQHPTSEELAIGNIKFTTFDLGGHQQARRLWKDYFP----------E 84 (184)
T ss_pred ccCEEEEECCCCCCHHHHHH-HHhcCCCcccCCccccceEEEEECCEEEEEEECCCCHHHHHHHHHHhC----------C
Confidence 34669999999999999998 787731 122345666554 46789999986 456677777 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH------------hCCeE
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA------------WGVKF 187 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~------------~~~~~ 187 (250)
+|++++|+|++++.+|.....|+.++.+.....++|+++|+||+|+.. .++.++..+...- ..+.+
T Consensus 85 ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i 162 (184)
T smart00178 85 VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEE
Confidence 999999999999999999998988886544446799999999999854 4566665544311 12348
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q psy5810 188 VETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~~ 208 (250)
++|||++|.|++++++||.+.
T Consensus 163 ~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEeecccCCChHHHHHHHHhh
Confidence 999999999999999999864
No 123
>PTZ00099 rab6; Provisional
Probab=99.90 E-value=3.5e-23 Score=165.96 Aligned_cols=114 Identities=24% Similarity=0.310 Sum_probs=101.7
Q ss_pred EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
.+.+|||+|++ +.+++.+++ +||++|+|||+++++||+.+..|+..+.+.. ..++|++|||||+|+.
T Consensus 30 ~l~iwDt~G~e~~~~~~~~~~~----------~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~ 98 (176)
T PTZ00099 30 RLQLWDTAGQERFRSLIPSYIR----------DSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLG 98 (176)
T ss_pred EEEEEECCChHHhhhccHHHhC----------CCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccc
Confidence 67799999987 567778888 9999999999999999999999999997653 3578999999999997
Q ss_pred CCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 167 RRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 167 ~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
+.+.++.+++..+++.+++.|+|+||++|.||.++|.+|++.+.+..
T Consensus 99 ~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 99 DLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred cccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence 77788999999999999999999999999999999999999886543
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.90 E-value=3.1e-23 Score=166.12 Aligned_cols=149 Identities=15% Similarity=0.137 Sum_probs=121.0
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT 117 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~ 117 (250)
..+.+||+++|..|||||||++ ++... .....+|.|..++ .+.+||.+|+. +.+|+.||.
T Consensus 11 ~~~~~~ililGl~~sGKTtll~-~l~~~~~~~~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~~y~~--------- 80 (175)
T PF00025_consen 11 KKKEIKILILGLDGSGKTTLLN-RLKNGEISETIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWKSYFQ--------- 80 (175)
T ss_dssp TTSEEEEEEEESTTSSHHHHHH-HHHSSSEEEEEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGGGGHT---------
T ss_pred cCcEEEEEEECCCccchHHHHH-HhhhccccccCcccccccceeeeCcEEEEEEeccccccccccceeecc---------
Confidence 3566789999999999999998 77653 2345566666665 56789999985 789999999
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH------HhCCeEEEEe
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY------AWGVKFVETS 191 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~------~~~~~~~evS 191 (250)
++|++|+|+|.++++.+.+..+.+.++.......++|+++++||+|+.+ .++.++...... ...+.++.||
T Consensus 81 -~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~~l~~~~~~~v~~~s 157 (175)
T PF00025_consen 81 -NADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLEKLKNKRPWSVFSCS 157 (175)
T ss_dssp -TESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGGGTTSSSCEEEEEEB
T ss_pred -ccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhhhcccCCceEEEeee
Confidence 8999999999999999999999888887765667899999999999865 345555554432 2345589999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy5810 192 VGLVYKTDELLVGIARQA 209 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i 209 (250)
|.+|+|+.+.|+||.+++
T Consensus 158 a~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 158 AKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp TTTTBTHHHHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHhcC
Confidence 999999999999999865
No 125
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.90 E-value=5e-24 Score=164.45 Aligned_cols=139 Identities=16% Similarity=0.067 Sum_probs=99.9
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER 132 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~ 132 (250)
||+++|++|||||||++ +|.+......++.+.... ..+|||+|++.. ...+++..... ++++|++++|||++++
T Consensus 2 kv~liG~~~vGKSsL~~-~l~~~~~~~~~t~~~~~~-~~~iDt~G~~~~-~~~~~~~~~~~---~~~ad~vilv~d~~~~ 75 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQ-ALQGEEILYKKTQAVEYN-DGAIDTPGEYVE-NRRLYSALIVT---AADADVIALVQSATDP 75 (142)
T ss_pred eEEEECCCCCCHHHHHH-HHcCCccccccceeEEEc-CeeecCchhhhh-hHHHHHHHHHH---hhcCCEEEEEecCCCC
Confidence 69999999999999998 888853333333332222 268999998411 11122222111 2289999999999999
Q ss_pred HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHH
Q psy5810 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVYKTDELLVGIA 206 (250)
Q Consensus 133 ~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~I~~lf~~l~ 206 (250)
.++.. ..|.... ..|+++|+||+|+.+ +....+++.++++..+. +++++||++|.|++++|+++.
T Consensus 76 ~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 76 ESRFP-PGFASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYLN 141 (142)
T ss_pred CcCCC-hhHHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHHh
Confidence 99865 3454422 239999999999864 34566777888888776 799999999999999999874
No 126
>PLN00023 GTP-binding protein; Provisional
Probab=99.90 E-value=2.5e-23 Score=178.81 Aligned_cols=127 Identities=15% Similarity=0.149 Sum_probs=100.1
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccc--cccccccccCce------------------------eEEEEEeCCCCc--
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQTYHPDV------------------------FFIVYSDTNHTQ-- 99 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~~~~~~------------------------~~i~i~Dt~g~~-- 99 (250)
....+||+|+|+.|||||||++ +|.++ .....+|++.++ ..++||||+|++
T Consensus 18 ~~~~iKIVLLGdsGVGKTSLI~-rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErf 96 (334)
T PLN00023 18 PCGQVRVLVVGDSGVGKSSLVH-LIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERY 96 (334)
T ss_pred CccceEEEEECCCCCcHHHHHH-HHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhh
Confidence 4555789999999999999997 88873 112233333321 126799999986
Q ss_pred cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-----------CCCCcEEEEeeCCCccCC
Q psy5810 100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-----------IGEKAVILVANKADLERR 168 (250)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-----------~~~~piilv~nK~Dl~~~ 168 (250)
+.+++.+|+ +++++|+|||++++.||+++..|+.++.+... ..++|++|||||+||...
T Consensus 97 rsL~~~yyr----------~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 97 KDCRSLFYS----------QINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred hhhhHHhcc----------CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 678888999 99999999999999999999999999976531 135899999999999654
Q ss_pred C---c---cCHHHHHHHHHHhCC
Q psy5810 169 R---Q---VTHSDGKKLAYAWGV 185 (250)
Q Consensus 169 ~---~---v~~~~~~~~~~~~~~ 185 (250)
+ . +..+++++||+++++
T Consensus 167 ~~~r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 167 EGTRGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred ccccccccccHHHHHHHHHHcCC
Confidence 2 3 368899999999884
No 127
>KOG3883|consensus
Probab=99.90 E-value=3.7e-23 Score=156.28 Aligned_cols=159 Identities=19% Similarity=0.155 Sum_probs=135.3
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc---cccCCCcccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ---RCLTPMPFCSQV 111 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~---~~~~~~~~~~~~ 111 (250)
+..||+++|..+||||+++. +++.+.......+.+|++ .+.++||+|.. ..+...|+.
T Consensus 8 k~~kVvVcG~k~VGKTaile-Ql~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q--- 83 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILE-QLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQ--- 83 (198)
T ss_pred cceEEEEECCccccHHHHHH-HHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhc---
Confidence 44679999999999999997 676654555666667666 45689999953 456677777
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
-+|++++|||..|++||+.+...-++|.+..+...+||+++|||+|+.+.+.++.+.+..||+...+..+|++
T Consensus 84 -------~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVt 156 (198)
T KOG3883|consen 84 -------FADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVT 156 (198)
T ss_pred -------cCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEE
Confidence 7999999999999999999887777777777778899999999999988899999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810 192 VGLVYKTDELLVGIARQAGLNKKRNKLL 219 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~~~~~~~ 219 (250)
|.+...+.+.|..+...+......+...
T Consensus 157 a~dR~sL~epf~~l~~rl~~pqskS~Fp 184 (198)
T KOG3883|consen 157 AMDRPSLYEPFTYLASRLHQPQSKSTFP 184 (198)
T ss_pred eccchhhhhHHHHHHHhccCCcccccCc
Confidence 9999999999999999887766555544
No 128
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.89 E-value=8.3e-23 Score=161.69 Aligned_cols=150 Identities=13% Similarity=0.062 Sum_probs=102.4
Q ss_pred EEEEEcCCCCchhhhchhhhcccccccc----ccccCce-------eEEEEEeCCCCcc-ccCCCc-cc-cccccccccC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDV-------FFIVYSDTNHTQR-CLTPMP-FC-SQVENFVQTY 118 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~-------~~i~i~Dt~g~~~-~~~~~~-~~-~~~~~~~~~~ 118 (250)
+|+++|++|||||||++ ++.+...... .+..... ..+.+|||+|+.. ...... +. ....... .
T Consensus 2 ~i~~~G~~~~GKssli~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~--~ 78 (168)
T cd01897 2 TLVIAGYPNVGKSSLVN-KLTRAKPEVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALA--H 78 (168)
T ss_pred eEEEEcCCCCCHHHHHH-HHhcCCCccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHHHH--h
Confidence 59999999999999998 8887422111 1222221 2678999999852 111110 00 0000000 1
Q ss_pred CCcEEEEEEeCCCHHhH--HHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 119 HPDVFVIVYSVIERKTF--KKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
.+|++++|+|++++.++ +....|+..+.+. ..+.|+++|+||+|+.+.+.+.. ..++....+++++++||++|.
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~--~~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPL--FKNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEE 154 (168)
T ss_pred ccCcEEEEEeCCcccccchHHHHHHHHHHHhh--cCcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccC
Confidence 36899999999987654 6666788887543 24799999999999865444332 455556567889999999999
Q ss_pred CHHHHHHHHHHHH
Q psy5810 197 KTDELLVGIARQA 209 (250)
Q Consensus 197 ~I~~lf~~l~~~i 209 (250)
|++++|+++.+.+
T Consensus 155 gi~~l~~~l~~~~ 167 (168)
T cd01897 155 GVDEVKNKACELL 167 (168)
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998865
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.89 E-value=4.4e-23 Score=160.61 Aligned_cols=139 Identities=15% Similarity=0.109 Sum_probs=104.2
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a 120 (250)
|+++|++|||||||++ ++.+ ..+...+.++.+ .+.+||++|+. +.++..++. ++
T Consensus 2 i~i~G~~~~GKssl~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~----------~~ 68 (159)
T cd04159 2 ITLVGLQNSGKTTLVN-VIAG--GQFSEDTIPTVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCR----------GV 68 (159)
T ss_pred EEEEcCCCCCHHHHHH-HHcc--CCCCcCccCCCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHh----------cC
Confidence 8999999999999998 8887 333333333321 57799999985 444555666 89
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH-----HHHhCCeEEEEecCCC
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL-----AYAWGVKFVETSVGLV 195 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~evSa~~~ 195 (250)
|++++|+|++++.++.....|+..+.+.....++|+++|+||+|+.+... ..+.... ....+++++++||++|
T Consensus 69 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (159)
T cd04159 69 NAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEK 146 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccC
Confidence 99999999999999999888888876544446789999999999865332 2222111 1123467899999999
Q ss_pred CCHHHHHHHHHH
Q psy5810 196 YKTDELLVGIAR 207 (250)
Q Consensus 196 ~~I~~lf~~l~~ 207 (250)
.|+.++|+++++
T Consensus 147 ~gi~~l~~~l~~ 158 (159)
T cd04159 147 TNIDIVLDWLIK 158 (159)
T ss_pred CChHHHHHHHhh
Confidence 999999999875
No 130
>KOG0073|consensus
Probab=99.89 E-value=3.7e-22 Score=152.57 Aligned_cols=151 Identities=14% Similarity=0.102 Sum_probs=124.0
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT 117 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~ 117 (250)
+.+.++|+|+|..|+|||++++ +|.+. .+...++.+..+. .+.+||.+||. +++|+.||.
T Consensus 13 kerE~riLiLGLdNsGKTti~~-kl~~~~~~~i~pt~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~nYfe--------- 82 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVK-KLLGEDTDTISPTLGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKNYFE--------- 82 (185)
T ss_pred hhheeEEEEEecCCCCchhHHH-HhcCCCccccCCccceeeEEEEecceEEEEEEcCCcchhHHHHHHhhh---------
Confidence 3457889999999999999998 78875 3334455555443 67899999996 899999999
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHH------HHHHHHHhCCeEEEEe
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSD------GKKLAYAWGVKFVETS 191 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~------~~~~~~~~~~~~~evS 191 (250)
.+|++|+|+|.+|+..|++....+.++.........|+++++||.|+.. .++.++ ...+++...++.+-||
T Consensus 83 -stdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~~l~ks~~~~l~~cs 159 (185)
T KOG0073|consen 83 -STDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLEELAKSHHWRLVKCS 159 (185)
T ss_pred -ccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHHHhccccCceEEEEe
Confidence 8999999999999999999988888877665556789999999999973 333333 2345577889999999
Q ss_pred cCCCCCHHHHHHHHHHHHHh
Q psy5810 192 VGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~ 211 (250)
|.+|+++.+.+.||...+..
T Consensus 160 ~~tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 160 AVTGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccccHHHHHHHHHHHHHH
Confidence 99999999999999998876
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.88 E-value=2e-22 Score=159.65 Aligned_cols=146 Identities=19% Similarity=0.105 Sum_probs=104.6
Q ss_pred EEEEcCCCCchhhhchhhhcccccc----ccccccCce--------eEEEEEeCCCCccc------cCCCcccccccccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDV--------FFIVYSDTNHTQRC------LTPMPFCSQVENFV 115 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~--------~~i~i~Dt~g~~~~------~~~~~~~~~~~~~~ 115 (250)
|+++|++|||||||++ ++.+.... ...++.+.+ ..+.+|||+|+... +...+++
T Consensus 3 v~ivG~~~~GKStl~~-~l~~~~~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~------- 74 (170)
T cd01898 3 VGLVGLPNAGKSTLLS-AISNAKPKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLGHRFLR------- 74 (170)
T ss_pred eEEECCCCCCHHHHHH-HHhcCCccccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCchHHHHH-------
Confidence 8999999999999998 78764211 112222222 26789999997421 1111111
Q ss_pred ccCCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-hCCeEEEEec
Q psy5810 116 QTYHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYA-WGVKFVETSV 192 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~evSa 192 (250)
.+..+|++++|+|++++ ++++.+..|++++..... ....|+++|+||+|+.+...+ .+....+... .+.+++++||
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa 153 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISA 153 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEec
Confidence 11269999999999999 899999999998865422 246899999999998654443 3344445555 3678999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy5810 193 GLVYKTDELLVGIARQ 208 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~ 208 (250)
+++.|+.++|+++.+.
T Consensus 154 ~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 154 LTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 9999999999999864
No 132
>KOG0070|consensus
Probab=99.88 E-value=6.8e-22 Score=154.63 Aligned_cols=150 Identities=13% Similarity=0.050 Sum_probs=122.0
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcc-ccccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCS-QVENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~-~~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~ 118 (250)
.+.++|+++|..|+||||+++ ++-- +.....+|+|..++ .+.+||.+||+ +.+|..||.
T Consensus 15 ~~e~~IlmlGLD~AGKTTILy-kLk~~E~vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~Y~~---------- 83 (181)
T KOG0070|consen 15 KKEMRILMVGLDAAGKTTILY-KLKLGEIVTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKHYFQ---------- 83 (181)
T ss_pred cceEEEEEEeccCCCceeeeE-eeccCCcccCCCccccceeEEEEcceEEEEEecCCCcccccchhhhcc----------
Confidence 345669999999999999998 5544 34445777777777 56689999997 789999999
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH-----HHHhCCeEEEEecC
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL-----AYAWGVKFVETSVG 193 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~evSa~ 193 (250)
+.+++|+|.|.+|++-+.+.+..+..+.......+.|+++.+||.|+++. .+..+..+. .....+.+..|+|.
T Consensus 84 ~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~L~l~~l~~~~w~iq~~~a~ 161 (181)
T KOG0070|consen 84 NTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNKLGLHSLRSRNWHIQSTCAI 161 (181)
T ss_pred CCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhHhhhhccCCCCcEEeecccc
Confidence 99999999999999999999988888877766678999999999999763 333333332 23345678899999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy5810 194 LVYKTDELLVGIARQAGL 211 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~ 211 (250)
+|+|+.|.++|+...+..
T Consensus 162 ~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 162 SGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred ccccHHHHHHHHHHHHhc
Confidence 999999999999988764
No 133
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.88 E-value=7.4e-22 Score=157.08 Aligned_cols=143 Identities=15% Similarity=0.112 Sum_probs=104.6
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~ 118 (250)
...++|+++|++|||||||++ ++.+... ...++.+.++. .+.+||++|+. ...+..++.
T Consensus 12 ~~~~~v~i~G~~g~GKStLl~-~l~~~~~~~~~~t~g~~~~~i~~~~~~~~~~D~~G~~~~~~~~~~~~~---------- 80 (173)
T cd04155 12 SEEPRILILGLDNAGKTTILK-QLASEDISHITPTQGFNIKTVQSDGFKLNVWDIGGQRAIRPYWRNYFE---------- 80 (173)
T ss_pred CCccEEEEEccCCCCHHHHHH-HHhcCCCcccCCCCCcceEEEEECCEEEEEEECCCCHHHHHHHHHHhc----------
Confidence 345779999999999999998 7877311 12233332222 56789999985 334445555
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--------CeEEEE
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--------VKFVET 190 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--------~~~~ev 190 (250)
++|++++|+|+++..+|.....|+..+.+.....++|+++++||+|+.+.. ..+ .+.+..+ ++++++
T Consensus 81 ~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~--~~~---~i~~~l~~~~~~~~~~~~~~~ 155 (173)
T cd04155 81 NTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA--PAE---EIAEALNLHDLRDRTWHIQAC 155 (173)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC--CHH---HHHHHcCCcccCCCeEEEEEe
Confidence 899999999999999999988888877655444679999999999985422 222 2233333 247899
Q ss_pred ecCCCCCHHHHHHHHHH
Q psy5810 191 SVGLVYKTDELLVGIAR 207 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~ 207 (250)
||++|.|++++|+||++
T Consensus 156 Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 156 SAKTGEGLQEGMNWVCK 172 (173)
T ss_pred ECCCCCCHHHHHHHHhc
Confidence 99999999999999975
No 134
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=1.3e-21 Score=171.24 Aligned_cols=150 Identities=17% Similarity=0.059 Sum_probs=112.4
Q ss_pred EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCcc------ccCCCcccccccccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQR------CLTPMPFCSQVENFV 115 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~------~~~~~~~~~~~~~~~ 115 (250)
|+|||.+|||||||++ ++.+.... ..+|..|.++ .+.+||++|..+ .+...+++
T Consensus 161 VglVG~PNaGKSTLln-~ls~a~~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flr------- 232 (335)
T PRK12299 161 VGLVGLPNAGKSTLIS-AVSAAKPKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLK------- 232 (335)
T ss_pred EEEEcCCCCCHHHHHH-HHHcCCCccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHH-------
Confidence 9999999999999998 78764211 1234444443 578999999742 12222222
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
.+..++++++|+|+++.++++++..|..++..+.. ..+.|+++|+||+|+.+...+..++...+++..+++++++||++
T Consensus 233 hie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAkt 312 (335)
T PRK12299 233 HIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVT 312 (335)
T ss_pred HhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 11268999999999998899999999999976532 24789999999999865444444455556666778899999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy5810 195 VYKTDELLVGIARQAGL 211 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~ 211 (250)
+.||++++++|.+.+.+
T Consensus 313 g~GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 313 GEGLDELLRALWELLEE 329 (335)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987754
No 135
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.87 E-value=6.7e-22 Score=161.90 Aligned_cols=151 Identities=19% Similarity=0.079 Sum_probs=103.4
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCccccCCCccccccccccccC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQRCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~ 118 (250)
.++|+|+|++|||||||++ ++.+.... ..++..+... .+.+|||+|...................+.
T Consensus 41 ~~~I~iiG~~g~GKStLl~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 119 (204)
T cd01878 41 IPTVALVGYTNAGKSTLFN-ALTGADVYAEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVA 119 (204)
T ss_pred CCeEEEECCCCCCHHHHHH-HHhcchhccCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHHHHHHHHHHHHHh
Confidence 3579999999999999998 78774211 1122222211 677899999753222211111111111123
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
++|++++|+|.+++.++..+..|...+... ...++|+++|+||+|+.+...+. .+....+.+++++||+++.|+
T Consensus 120 ~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~-~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~~gi 193 (204)
T cd01878 120 EADLLLHVVDASDPDYEEQIETVEKVLKEL-GAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTGEGL 193 (204)
T ss_pred cCCeEEEEEECCCCChhhHHHHHHHHHHHc-CcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCCCCH
Confidence 799999999999999998887777766443 34578999999999986533221 344555678999999999999
Q ss_pred HHHHHHHHHH
Q psy5810 199 DELLVGIARQ 208 (250)
Q Consensus 199 ~~lf~~l~~~ 208 (250)
.+++++|...
T Consensus 194 ~~l~~~L~~~ 203 (204)
T cd01878 194 DELLEAIEEL 203 (204)
T ss_pred HHHHHHHHhh
Confidence 9999999865
No 136
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=7.5e-22 Score=173.50 Aligned_cols=179 Identities=13% Similarity=0.056 Sum_probs=120.7
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccccc-ccccccCce-----------eEEEEEeCCCCccccCCCccccccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~ 116 (250)
.+.+||+++|++|||||||+| +|++.... ..+.++.|. ..+.+|||+|+...............+..
T Consensus 50 ~k~~kV~ivG~~nvGKSTLin-~l~~~k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~ 128 (339)
T PRK15494 50 QKTVSVCIIGRPNSGKSTLLN-RIIGEKLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEKAMVRCAWSS 128 (339)
T ss_pred cceeEEEEEcCCCCCHHHHHH-HHhCCceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHHHHHHHHHHH
Confidence 456789999999999999999 78874211 112222221 16779999998532211111111111222
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEecC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSVG 193 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa~ 193 (250)
+.++|++++|+|.++ +|+.+. .|+..+.. .+.|.++|+||+|+.+. ...+..+++...+ ..++++||+
T Consensus 129 l~~aDvil~VvD~~~--s~~~~~~~il~~l~~----~~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iSAk 199 (339)
T PRK15494 129 LHSADLVLLIIDSLK--SFDDITHNILDKLRS----LNIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPISAL 199 (339)
T ss_pred hhhCCEEEEEEECCC--CCCHHHHHHHHHHHh----cCCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEecc
Confidence 338999999999765 455554 35555533 34677889999998642 2445666665554 569999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccC
Q psy5810 194 LVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFK 237 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (250)
+|.|++++|++|...+.......+....+....+.++.++.|++
T Consensus 200 tg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~ 243 (339)
T PRK15494 200 SGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQ 243 (339)
T ss_pred CccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Confidence 99999999999999988877777766666667777777777765
No 137
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.87 E-value=3.7e-21 Score=158.89 Aligned_cols=152 Identities=20% Similarity=0.198 Sum_probs=117.5
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|+.|||||||++ +|.. ..+...+.+++. ++.+|||+||+ +.+++.|+.
T Consensus 6 ~kivv~G~~g~GKTtl~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~------ 76 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLN-RLVG--DEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYR------ 76 (219)
T ss_pred EEEEEEcCCCccHHHHHH-HHhc--CcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhc------
Confidence 789999999999999998 8888 666665655543 37899999997 678889999
Q ss_pred cccCCCcEEEEEEeCCC-HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC------------ccCHHHHHHHHH
Q psy5810 115 VQTYHPDVFVIVYSVIE-RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR------------QVTHSDGKKLAY 181 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~~~~ 181 (250)
+++++++|||.++ ..+++....|...+.... ....|+++++||+|+...+ .+........+.
T Consensus 77 ----~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (219)
T COG1100 77 ----GANGILIVYDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAV 151 (219)
T ss_pred ----CCCEEEEEEecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHh
Confidence 9999999999999 556666788999886542 2579999999999997643 333333333332
Q ss_pred Hh---CCeEEEEecC--CCCCHHHHHHHHHHHHHhhhhhhh
Q psy5810 182 AW---GVKFVETSVG--LVYKTDELLVGIARQAGLNKKRNK 217 (250)
Q Consensus 182 ~~---~~~~~evSa~--~~~~I~~lf~~l~~~i~~~~~~~~ 217 (250)
.. ...++++|++ .+.++.++|..++..+........
T Consensus 152 ~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (219)
T COG1100 152 LPEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEKLV 192 (219)
T ss_pred hhhhcccceeEeecccCCCcCHHHHHHHHHHHHHHhhhhhh
Confidence 22 3348999999 999999999999998876544433
No 138
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.86 E-value=3.4e-21 Score=154.04 Aligned_cols=139 Identities=12% Similarity=0.149 Sum_probs=99.5
Q ss_pred EEEEEcCCCCchhhhchhhhccccc---------ccccc------ccCc----------------eeEEEEEeCCCCcc-
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVE---------NFVQT------YHPD----------------VFFIVYSDTNHTQR- 100 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~---------~~~~~------~~~~----------------~~~i~i~Dt~g~~~- 100 (250)
+|+++|++|||||||++ +|++... .+.++ .+.+ -..+.+|||+|+++
T Consensus 2 ni~~vG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLAD-RLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred cEEEEeecCCCHHHHHH-HHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 38999999999999998 7765211 01110 0111 12467999999863
Q ss_pred -ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810 101 -CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179 (250)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 179 (250)
..+..+++ ++|++|+|||+++..+++.+..|.... . .++|+++|+||+|+.+.+ ......++
T Consensus 81 ~~~~~~~~~----------~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~ 143 (179)
T cd01890 81 SYEVSRSLA----------ACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD--PERVKQQI 143 (179)
T ss_pred HHHHHHHHH----------hcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC--HHHHHHHH
Confidence 33444555 899999999999987777777665432 1 468999999999986422 22334566
Q ss_pred HHHhCCe---EEEEecCCCCCHHHHHHHHHHHH
Q psy5810 180 AYAWGVK---FVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 180 ~~~~~~~---~~evSa~~~~~I~~lf~~l~~~i 209 (250)
++.++++ ++++||++|.|++++|+++.+.+
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence 6666664 89999999999999999998765
No 139
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.85 E-value=2.7e-21 Score=152.40 Aligned_cols=145 Identities=13% Similarity=0.011 Sum_probs=100.7
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER 132 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~ 132 (250)
+|+++|.+|||||||++ ++.+.......+.+..+....+|||||++... +..++.+... ++++|++++|+|.++.
T Consensus 3 ~i~~iG~~~~GKstl~~-~l~~~~~~~~~~~~v~~~~~~~iDtpG~~~~~-~~~~~~~~~~---~~~ad~il~v~d~~~~ 77 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFN-ALQGNYTLARKTQAVEFNDKGDIDTPGEYFSH-PRWYHALITT---LQDVDMLIYVHGANDP 77 (158)
T ss_pred EEEEECCCCCCHHHHHH-HHcCCCccCccceEEEECCCCcccCCccccCC-HHHHHHHHHH---HhcCCEEEEEEeCCCc
Confidence 59999999999999998 67763211112222112122369999985222 1122212222 2289999999999998
Q ss_pred HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC--eEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV--KFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 133 ~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~--~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
.++ +..|+..+ ..+.|+++++||+|+.+ ...+...+++++.++ +++++||++|.|++++|+++.+.+.
T Consensus 78 ~s~--~~~~~~~~-----~~~~~ii~v~nK~Dl~~---~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~ 147 (158)
T PRK15467 78 ESR--LPAGLLDI-----GVSKRQIAVISKTDMPD---ADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTK 147 (158)
T ss_pred ccc--cCHHHHhc-----cCCCCeEEEEEccccCc---ccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhch
Confidence 876 33465554 13678999999999854 345667788888875 8999999999999999999988765
Q ss_pred hh
Q psy5810 211 LN 212 (250)
Q Consensus 211 ~~ 212 (250)
+.
T Consensus 148 ~~ 149 (158)
T PRK15467 148 QE 149 (158)
T ss_pred hh
Confidence 44
No 140
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.85 E-value=3.1e-21 Score=164.86 Aligned_cols=176 Identities=16% Similarity=0.001 Sum_probs=113.2
Q ss_pred EEEEEcCCCCchhhhchhhhcccccccccc-ccCc---e--------eEEEEEeCCCCccccCCCccccccc-cccccCC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQT-YHPD---V--------FFIVYSDTNHTQRCLTPMPFCSQVE-NFVQTYH 119 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~-~~~~---~--------~~i~i~Dt~g~~~~~~~~~~~~~~~-~~~~~~~ 119 (250)
+|+++|.+|||||||+| ++++......+. .+.| + ..+.+|||||....... ....+.+ ....+.+
T Consensus 2 ~V~liG~pnvGKSTLln-~L~~~~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~-l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLN-QLHGQKISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHS-LNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHH-HHhCCcEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcch-HHHHHHHHHHHHHhh
Confidence 59999999999999999 888742111111 1111 1 15778999998633111 1111111 1112238
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCCCH
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVYKT 198 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~I 198 (250)
+|++++|+|.++..+++ ..++..+.. .+.|+++|+||+|+.+... ..+....++...+. +++++||++|.|+
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi 152 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNT 152 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCH
Confidence 99999999999987764 334444422 4789999999999854222 22334445554454 6999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccC
Q psy5810 199 DELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFK 237 (250)
Q Consensus 199 ~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (250)
+++++++.+.+.......+....+.......+.++.|++
T Consensus 153 ~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~ 191 (270)
T TIGR00436 153 SFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREK 191 (270)
T ss_pred HHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHH
Confidence 999999999887665555544444445555566665554
No 141
>PRK04213 GTP-binding protein; Provisional
Probab=99.84 E-value=3.7e-21 Score=157.11 Aligned_cols=147 Identities=12% Similarity=-0.038 Sum_probs=92.4
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccc--cCce-------eEEEEEeCCCCc-------------cccCCCcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY--HPDV-------FFIVYSDTNHTQ-------------RCLTPMPF 107 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~--~~~~-------~~i~i~Dt~g~~-------------~~~~~~~~ 107 (250)
..++|+++|++|||||||++ ++.+. .+.... +.+. ..+.+|||+|.. +.++..++
T Consensus 8 ~~~~i~i~G~~~~GKSsLin-~l~~~--~~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 84 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVR-ELTGK--KVRVGKRPGVTRKPNHYDWGDFILTDLPGFGFMSGVPKEVQEKIKDEIVRYI 84 (201)
T ss_pred CCCEEEEECCCCCCHHHHHH-HHhCC--CCccCCCCceeeCceEEeecceEEEeCCccccccccCHHHHHHHHHHHHHHH
Confidence 44679999999999999998 78774 232211 1111 157899999942 11111122
Q ss_pred ccccccccccCCCcEEEEEEeCCCHHhHHHHHHHH--------HHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810 108 CSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDML--------KTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179 (250)
Q Consensus 108 ~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~--------~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 179 (250)
.. .+..++++++|.|.+....+. ..|. .++.+.....++|+++|+||+|+.+.+ .+...++
T Consensus 85 ~~------~~~~~~~vi~v~d~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~---~~~~~~~ 153 (201)
T PRK04213 85 ED------NADRILAAVLVVDGKSFIEII--ERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR---DEVLDEI 153 (201)
T ss_pred Hh------hhhhheEEEEEEeCccccccc--cccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH---HHHHHHH
Confidence 10 111467888888876532210 1221 011111112479999999999986432 3455666
Q ss_pred HHHhCC---------eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 180 AYAWGV---------KFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 180 ~~~~~~---------~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
++.+++ +++++||++| ||+++|++|++.+..
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 154 AERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred HHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 666665 4799999999 999999999987654
No 142
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=3.5e-20 Score=145.60 Aligned_cols=137 Identities=15% Similarity=0.079 Sum_probs=89.9
Q ss_pred EEEEEcCCCCchhhhchhhhcccc-ccccc------cccCc--------eeEEEEEeCCCCcccc--CCCcccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQV-ENFVQ------TYHPD--------VFFIVYSDTNHTQRCL--TPMPFCSQVENFV 115 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~------~~~~~--------~~~i~i~Dt~g~~~~~--~~~~~~~~~~~~~ 115 (250)
-|+++|++|||||||++ +|.+.. ..+.. +.... -..+.+|||+|+++.. ...++.
T Consensus 2 ~i~i~G~~~~GKssl~~-~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~------- 73 (164)
T cd04171 2 IIGTAGHIDHGKTTLIK-ALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGAG------- 73 (164)
T ss_pred EEEEEecCCCCHHHHHH-HHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhhh-------
Confidence 38999999999999998 887531 11211 11111 1267899999986321 122333
Q ss_pred ccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc--cCHHHHHHHHHH---hCCeE
Q psy5810 116 QTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ--VTHSDGKKLAYA---WGVKF 187 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~~~~~~---~~~~~ 187 (250)
++|++++|+|+++ +++++.+. + +... ...|+++++||+|+.+... ...++..+..+. .+.++
T Consensus 74 ---~ad~ii~V~d~~~~~~~~~~~~~~-~---~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (164)
T cd04171 74 ---GIDLVLLVVAADEGIMPQTREHLE-I---LELL---GIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPI 143 (164)
T ss_pred ---cCCEEEEEEECCCCccHhHHHHHH-H---HHHh---CCCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcE
Confidence 7999999999987 44554433 1 2111 2248999999999864321 112333444443 35789
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q psy5810 188 VETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~ 207 (250)
+++||+++.|++++|+.+..
T Consensus 144 ~~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 144 FPVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEEeCCCCcCHHHHHHHHhh
Confidence 99999999999999998753
No 143
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.83 E-value=1.9e-20 Score=165.11 Aligned_cols=147 Identities=20% Similarity=0.124 Sum_probs=101.1
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccc----cccccccCcee--------EEEEEeCCCCccccCCCc---ccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVE----NFVQTYHPDVF--------FIVYSDTNHTQRCLTPMP---FCSQVENFV 115 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~----~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~~---~~~~~~~~~ 115 (250)
.++|+++|.+|||||||+| ++++... ...+|.+++.. .+.+|||+|..+.+.... ++...+.
T Consensus 189 ~~~ValvG~~NvGKSSLln-~L~~~~~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~lie~f~~tle~-- 265 (351)
T TIGR03156 189 VPTVALVGYTNAGKSTLFN-ALTGADVYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHELVAAFRATLEE-- 265 (351)
T ss_pred CcEEEEECCCCCCHHHHHH-HHhCCceeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHHHHHHHHHHHH--
Confidence 3779999999999999999 8887421 11223333322 677899999853332221 2222222
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
+++||++++|+|++++.+++.+..|...+... ...+.|+++|+||+|+.+...+ ... .....+++++||++|
T Consensus 266 -~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~~~~piIlV~NK~Dl~~~~~v-----~~~-~~~~~~~i~iSAktg 337 (351)
T TIGR03156 266 -VREADLLLHVVDASDPDREEQIEAVEKVLEEL-GAEDIPQLLVYNKIDLLDEPRI-----ERL-EEGYPEAVFVSAKTG 337 (351)
T ss_pred -HHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-ccCCCCEEEEEEeecCCChHhH-----HHH-HhCCCCEEEEEccCC
Confidence 23899999999999999888887776655433 3357899999999998542221 111 112346899999999
Q ss_pred CCHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQ 208 (250)
Q Consensus 196 ~~I~~lf~~l~~~ 208 (250)
.|++++++++.+.
T Consensus 338 ~GI~eL~~~I~~~ 350 (351)
T TIGR03156 338 EGLDLLLEAIAER 350 (351)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999998753
No 144
>KOG0071|consensus
Probab=99.83 E-value=4.2e-20 Score=137.83 Aligned_cols=147 Identities=11% Similarity=0.034 Sum_probs=123.5
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a 120 (250)
.++|+++|..++||||+++ .+..+ .....+|.|..++ ++.+||.+||. +.+|..||. +.
T Consensus 17 E~~ilmlGLd~aGKTtiLy-KLkl~~~~~~ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy~----------gt 85 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILY-KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYT----------GT 85 (180)
T ss_pred cceEEEEecccCCceehhh-HHhcCCCcccccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhcc----------CC
Confidence 4559999999999999998 66553 5567788888877 56789999997 899999999 99
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecCCC
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVGLV 195 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~~ 195 (250)
.++|||.|..+.+..++.++.+..+.+.+...+.|+++.+||.|++..+ ++.++..+. +...+-..++||.+|
T Consensus 86 qglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~g 163 (180)
T KOG0071|consen 86 QGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSG 163 (180)
T ss_pred ceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccc
Confidence 9999999999999999999888888888888899999999999998643 455555443 334566889999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQAG 210 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~ 210 (250)
.++.|-|.||.+.+.
T Consensus 164 dgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 164 DGLKEGLSWLSNNLK 178 (180)
T ss_pred hhHHHHHHHHHhhcc
Confidence 999999999987654
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.83 E-value=9.8e-20 Score=142.28 Aligned_cols=145 Identities=20% Similarity=0.079 Sum_probs=95.9
Q ss_pred EEcCCCCchhhhchhhhccccccccccccCce-----------eEEEEEeCCCCccccCCCccccccccccccCCCcEEE
Q psy5810 56 VHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFV 124 (250)
Q Consensus 56 iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~ii 124 (250)
|+|++|||||||++ ++.+.........+.+. ..+.+|||+|++.......-......+....++|+++
T Consensus 1 l~G~~~~GKssl~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi 79 (158)
T cd01879 1 LVGNPNVGKTTLFN-ALTGARQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHH-HHhcCcccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEE
Confidence 58999999999998 78774211111111111 1578999999863221100000011111112799999
Q ss_pred EEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy5810 125 IVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVG 204 (250)
Q Consensus 125 lV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~ 204 (250)
+|+|.+++++.. .|...+.+ .++|+++|+||+|+.+...+... ...+++.++.+++++||.++.|+.+++++
T Consensus 80 ~v~d~~~~~~~~---~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~-~~~~~~~~~~~~~~iSa~~~~~~~~l~~~ 151 (158)
T cd01879 80 NVVDATNLERNL---YLTLQLLE----LGLPVVVALNMIDEAEKRGIKID-LDKLSELLGVPVVPTSARKGEGIDELKDA 151 (158)
T ss_pred EEeeCCcchhHH---HHHHHHHH----cCCCEEEEEehhhhcccccchhh-HHHHHHhhCCCeEEEEccCCCCHHHHHHH
Confidence 999999865532 34444433 36899999999999664444333 45777778899999999999999999999
Q ss_pred HHHHH
Q psy5810 205 IARQA 209 (250)
Q Consensus 205 l~~~i 209 (250)
+...+
T Consensus 152 l~~~~ 156 (158)
T cd01879 152 IAELA 156 (158)
T ss_pred HHHHh
Confidence 98753
No 146
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.82 E-value=7.2e-20 Score=160.04 Aligned_cols=147 Identities=20% Similarity=0.087 Sum_probs=107.7
Q ss_pred EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCccc------cCCCcccccccccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQRC------LTPMPFCSQVENFV 115 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~~------~~~~~~~~~~~~~~ 115 (250)
|+|+|.+|||||||++ ++...... ..+|..|+++ .+.+|||||..+. +...+++
T Consensus 160 V~lvG~pnaGKSTLl~-~lt~~~~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flr------- 231 (329)
T TIGR02729 160 VGLVGLPNAGKSTLIS-AVSAAKPKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLK------- 231 (329)
T ss_pred EEEEcCCCCCHHHHHH-HHhcCCccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHH-------
Confidence 9999999999999998 88874221 1234444443 5778999997521 2222222
Q ss_pred ccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 116 QTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
.+..++++++|+|+++. ++++++..|.+++..+.. ..+.|+++|+||+|+.+... ..+....+++.++.+++++|
T Consensus 232 hierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iS 310 (329)
T TIGR02729 232 HIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPIS 310 (329)
T ss_pred HHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEE
Confidence 11258999999999987 688888888888866532 24789999999999865432 23445556667788899999
Q ss_pred cCCCCCHHHHHHHHHHHH
Q psy5810 192 VGLVYKTDELLVGIARQA 209 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i 209 (250)
|+++.||+++++++.+.+
T Consensus 311 Aktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 311 ALTGEGLDELLYALAELL 328 (329)
T ss_pred ccCCcCHHHHHHHHHHHh
Confidence 999999999999998754
No 147
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.82 E-value=1.3e-19 Score=140.20 Aligned_cols=139 Identities=16% Similarity=0.206 Sum_probs=101.0
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+||+++|.+|+|||||++ ++... .+...+.++. ..+.+||++|+. ..++..++.
T Consensus 2 ~ki~~~G~~~~GKstl~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~------ 72 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLN-RLLGN--KFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYR------ 72 (161)
T ss_pred eEEEEECCCCCCHHHHHH-HHhCC--CCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHh------
Confidence 579999999999999998 77774 2333332222 146779999975 334444455
Q ss_pred cccCCCcEEEEEEeCCCH-HhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 115 VQTYHPDVFVIVYSVIER-KTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~-~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
.+++++.++|+... .++.... .|...+...... +.|+++++||+|+.... +.......+......+++++||
T Consensus 73 ----~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa 146 (161)
T TIGR00231 73 ----AVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSA 146 (161)
T ss_pred ----hhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeec
Confidence 78999999999887 7777765 677777655322 88999999999986533 3333344444444567999999
Q ss_pred CCCCCHHHHHHHH
Q psy5810 193 GLVYKTDELLVGI 205 (250)
Q Consensus 193 ~~~~~I~~lf~~l 205 (250)
+++.|+.++|++|
T Consensus 147 ~~~~gv~~~~~~l 159 (161)
T TIGR00231 147 ETGKNIDSAFKIV 159 (161)
T ss_pred CCCCCHHHHHHHh
Confidence 9999999999886
No 148
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.82 E-value=4.4e-20 Score=143.98 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=96.5
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCCC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~a 120 (250)
++|+++|.||||||||+| ++++.........|.|++ .+.++|+||.+.......-...-..+....++
T Consensus 1 i~ialvG~PNvGKStLfN-~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~ 79 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFN-ALTGAKQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKP 79 (156)
T ss_dssp -EEEEEESTTSSHHHHHH-HHHTTSEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHH-HHHCCCceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCC
Confidence 579999999999999999 899875554455555554 67789999976321111111111112212379
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE 200 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~ 200 (250)
|+++.|.|.++.+.-.. ...++.+ -++|++++.||+|+...+.+.. ....+.+.+|+|++++||++++|+++
T Consensus 80 D~ii~VvDa~~l~r~l~---l~~ql~e----~g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~~sa~~~~g~~~ 151 (156)
T PF02421_consen 80 DLIIVVVDATNLERNLY---LTLQLLE----LGIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIPVSARTGEGIDE 151 (156)
T ss_dssp SEEEEEEEGGGHHHHHH---HHHHHHH----TTSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEEEBTTTTBTHHH
T ss_pred CEEEEECCCCCHHHHHH---HHHHHHH----cCCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEEEEeCCCcCHHH
Confidence 99999999998653323 3333433 3699999999999865444433 36678888999999999999999999
Q ss_pred HHHHH
Q psy5810 201 LLVGI 205 (250)
Q Consensus 201 lf~~l 205 (250)
+++.+
T Consensus 152 L~~~I 156 (156)
T PF02421_consen 152 LKDAI 156 (156)
T ss_dssp HHHHH
T ss_pred HHhhC
Confidence 98764
No 149
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.82 E-value=7.2e-20 Score=145.56 Aligned_cols=150 Identities=20% Similarity=0.126 Sum_probs=100.5
Q ss_pred EEcCCCCchhhhchhhhccccc---c-ccccccCc--------eeEEEEEeCCCCccccCCCccccccccc-cccCCCcE
Q psy5810 56 VHSDTNHTQRCLTSMPFCSQVE---N-FVQTYHPD--------VFFIVYSDTNHTQRCLTPMPFCSQVENF-VQTYHPDV 122 (250)
Q Consensus 56 iiG~~~vGKSsLi~~~~~~~~~---~-~~~~~~~~--------~~~i~i~Dt~g~~~~~~~~~~~~~~~~~-~~~~~ad~ 122 (250)
++|++|||||||++ ++.+... . ...+..+. -..+.+|||+|........ +.....+ ..++++|+
T Consensus 1 iiG~~~~GKStll~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~--~~~~~~~~~~~~~~d~ 77 (176)
T cd01881 1 LVGLPNVGKSTLLN-ALTNAKPKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG--RGLGNQFLAHIRRADA 77 (176)
T ss_pred CCCCCCCcHHHHHH-HHhcCCccccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC--CCccHHHHHHHhccCE
Confidence 58999999999998 7877421 1 11122222 2256899999974221110 0000010 11227999
Q ss_pred EEEEEeCCCH------HhHHHHHHHHHHHHhhhCC------CCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810 123 FVIVYSVIER------KTFKKAEDMLKTLWDSKYI------GEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET 190 (250)
Q Consensus 123 iilV~D~~~~------~Sf~~~~~~~~~i~~~~~~------~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev 190 (250)
+++|+|.+++ .+++.+..|..++...... .+.|+++|+||+|+.....+............+.+++++
T Consensus 78 ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (176)
T cd01881 78 ILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPI 157 (176)
T ss_pred EEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEE
Confidence 9999999998 5888888888888644321 478999999999986544433332334444556779999
Q ss_pred ecCCCCCHHHHHHHHHHH
Q psy5810 191 SVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~ 208 (250)
||+++.|++++++++...
T Consensus 158 Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 158 SAKTEEGLDELIRAIYEL 175 (176)
T ss_pred ehhhhcCHHHHHHHHHhh
Confidence 999999999999998754
No 150
>KOG4423|consensus
Probab=99.82 E-value=2.4e-21 Score=151.08 Aligned_cols=154 Identities=17% Similarity=0.148 Sum_probs=127.7
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee----------------EEEEEeCCCCc--cccCCCcccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF----------------FIVYSDTNHTQ--RCLTPMPFCS 109 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~----------------~i~i~Dt~g~~--~~~~~~~~~~ 109 (250)
..+..|+.|+|+.|+|||++++ +++. ..|...|..+++ ++++||.+||+ ..++..||+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~-ryv~--~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyyk- 97 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIK-RYVH--QNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYK- 97 (229)
T ss_pred hhhhhhhheeeeccccchhHHH-HHHH--HHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEec-
Confidence 4566779999999999999998 7887 566666666665 56789999998 567788999
Q ss_pred ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhh---hCCCCCcEEEEeeCCCccCCCccC-HHHHHHHHHHhCC
Q psy5810 110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS---KYIGEKAVILVANKADLERRRQVT-HSDGKKLAYAWGV 185 (250)
Q Consensus 110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~---~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~~~~~ 185 (250)
.|++.++|||+++..+|+....|..++... .....+|+++.+||||.+...... .....++++++|+
T Consensus 98 ---------ea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf 168 (229)
T KOG4423|consen 98 ---------EAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGF 168 (229)
T ss_pred ---------CCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCc
Confidence 899999999999999999999999988532 334468899999999986533222 4677889999998
Q ss_pred e-EEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 186 K-FVETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 186 ~-~~evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
. ++|+|++.+.||.|.-..|++.+..+..
T Consensus 169 ~gwtets~Kenkni~Ea~r~lVe~~lvnd~ 198 (229)
T KOG4423|consen 169 EGWTETSAKENKNIPEAQRELVEKILVNDE 198 (229)
T ss_pred cceeeeccccccChhHHHHHHHHHHHhhcc
Confidence 7 9999999999999999999998876653
No 151
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.81 E-value=1.9e-19 Score=165.07 Aligned_cols=160 Identities=15% Similarity=0.089 Sum_probs=104.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccc-cccccCce-----------eEEEEEeCCCCccccC----CCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENF-VQTYHPDV-----------FFIVYSDTNHTQRCLT----PMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~-~~~~~~~~-----------~~i~i~Dt~g~~~~~~----~~~~~~~~~~ 113 (250)
..+||+++|.+|||||||++ ++++..... .+..+.+. ..+.+|||+|..+... ..++.. ...
T Consensus 210 ~~~kI~iiG~~nvGKSSLin-~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~-~~~ 287 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLN-KLAGEERSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYAS-LRT 287 (472)
T ss_pred cceEEEEECCCCCCHHHHHH-HHhCCCcccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHH-HHH
Confidence 45889999999999999999 788742111 11112211 1567999999753221 122211 111
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc--cCHHHHH-HHHHHhCCeEEEE
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ--VTHSDGK-KLAYAWGVKFVET 190 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~-~~~~~~~~~~~ev 190 (250)
...++++|++++|||++++.+++++. |+..+.. .+.|+|+|+||+|+.+... ....+.. .+......+++++
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 11223899999999999998888774 4454432 5789999999999854211 1111121 1222234679999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810 191 SVGLVYKTDELLVGIARQAGLNKKRN 216 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~~~~~~ 216 (250)
||++|.||+++|+.+.+.+......-
T Consensus 363 SAk~g~gv~~lf~~i~~~~~~~~~~i 388 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALESWDTRI 388 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcccC
Confidence 99999999999999998776544443
No 152
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.81 E-value=2.6e-19 Score=162.21 Aligned_cols=139 Identities=16% Similarity=0.089 Sum_probs=101.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCc-ee-----------EEEEEeCCCCcccc----------CCCcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD-VF-----------FIVYSDTNHTQRCL----------TPMPF 107 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~-~~-----------~i~i~Dt~g~~~~~----------~~~~~ 107 (250)
..+||+++|++|||||||+| ++++....+.+.+..+ .. .+.+|||+|+.... ...++
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN-~L~~~~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~ 280 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLN-ALLKQDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVERLGIEKSFKAI 280 (442)
T ss_pred cCCEEEEECCCCCcHHHHHH-HHhCCCCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHHHHHHHHHHHH
Confidence 34679999999999999999 8887432223222222 11 56799999985211 11223
Q ss_pred ccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeE
Q psy5810 108 CSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKF 187 (250)
Q Consensus 108 ~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~ 187 (250)
. ++|++++|||.+++.+++.. |+..+.. .+.|+++|+||+|+... +...+++.++.++
T Consensus 281 ~----------~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~ 338 (442)
T TIGR00450 281 K----------QADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN------SLEFFVSSKVLNS 338 (442)
T ss_pred h----------hCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc------chhhhhhhcCCce
Confidence 3 89999999999999888775 7766632 46899999999998542 2244566778889
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 188 VETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
+++||++ .||+++|+.+.+.+.+.
T Consensus 339 ~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 339 SNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred EEEEEec-CCHHHHHHHHHHHHHHH
Confidence 9999998 69999999999877654
No 153
>KOG0096|consensus
Probab=99.80 E-value=1.2e-19 Score=141.93 Aligned_cols=147 Identities=16% Similarity=0.204 Sum_probs=121.7
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
.-..|++++|+.|.|||++++ +... ..|..+|.++++ ++..|||+||+ ..+...||-
T Consensus 8 ~~~fklvlvGdgg~gKtt~vk-r~lt--geFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI--- 81 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVK-RHLT--GEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYI--- 81 (216)
T ss_pred cceEEEEEecCCcccccchhh-hhhc--ccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEE---
Confidence 345679999999999999998 6666 677777777765 56689999998 466777888
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++.++|++||++.+-++.++..|.+++.+.. .++||++.|||.|.+. +.+ ......+-+..++.|+++|
T Consensus 82 -------~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~-r~~-k~k~v~~~rkknl~y~~iS 150 (216)
T KOG0096|consen 82 -------QGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKA-RKV-KAKPVSFHRKKNLQYYEIS 150 (216)
T ss_pred -------ecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccc-ccc-ccccceeeecccceeEEee
Confidence 8999999999999999999999999997654 6799999999999865 222 2334446667788999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~ 212 (250)
|+.+.|.+.-|.|+++.+...
T Consensus 151 aksn~NfekPFl~LarKl~G~ 171 (216)
T KOG0096|consen 151 AKSNYNFERPFLWLARKLTGD 171 (216)
T ss_pred cccccccccchHHHhhhhcCC
Confidence 999999999999999987643
No 154
>PRK11058 GTPase HflX; Provisional
Probab=99.80 E-value=3.2e-19 Score=160.75 Aligned_cols=150 Identities=16% Similarity=0.058 Sum_probs=101.8
Q ss_pred EEEEEEcCCCCchhhhchhhhcccc----ccccccccCcee--------EEEEEeCCCCccccCCCc---cccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQV----ENFVQTYHPDVF--------FIVYSDTNHTQRCLTPMP---FCSQVENFVQ 116 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~----~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~~---~~~~~~~~~~ 116 (250)
.+|+++|.+|||||||+| ++++.. +....|.+++.. .+.+|||+|..+.+.... +....+.
T Consensus 198 p~ValVG~~NaGKSSLlN-~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lve~f~~tl~~--- 273 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFN-RITEARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQE--- 273 (426)
T ss_pred CEEEEECCCCCCHHHHHH-HHhCCceeeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHHHHHHHHHHH---
Confidence 579999999999999999 788742 122234444432 567899999854322211 1112222
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLV 195 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~ 195 (250)
+++||++++|+|++++.+++.+..|...+... ...++|+++|+||+|+..... .... ....+.+ ++++||++|
T Consensus 274 ~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el-~~~~~pvIiV~NKiDL~~~~~---~~~~--~~~~~~~~~v~ISAktG 347 (426)
T PRK11058 274 TRQATLLLHVVDAADVRVQENIEAVNTVLEEI-DAHEIPTLLVMNKIDMLDDFE---PRID--RDEENKPIRVWLSAQTG 347 (426)
T ss_pred hhcCCEEEEEEeCCCccHHHHHHHHHHHHHHh-ccCCCCEEEEEEcccCCCchh---HHHH--HHhcCCCceEEEeCCCC
Confidence 23899999999999998888876554444322 235789999999999854211 1111 1123555 589999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy5810 196 YKTDELLVGIARQAGL 211 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~ 211 (250)
.|++++++++...+..
T Consensus 348 ~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 348 AGIPLLFQALTERLSG 363 (426)
T ss_pred CCHHHHHHHHHHHhhh
Confidence 9999999999988754
No 155
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.80 E-value=4.2e-19 Score=138.16 Aligned_cols=143 Identities=15% Similarity=0.097 Sum_probs=95.1
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccc-cccCc-----------eeEEEEEeCCCCccccCCCccccccccccccCC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPD-----------VFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~-----------~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ 119 (250)
++|+++|++|+|||||++ ++.+....... ..+.+ -..+.+|||+|................+.....
T Consensus 2 ~~i~l~G~~~~GKstli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~ 80 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLN-ALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred cEEEEECCCCCCHHHHHH-HHHCCceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHHHHHHHHHhh
Confidence 479999999999999998 77764211111 11111 126789999997532211000000001111127
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD 199 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~ 199 (250)
+|++++|+|++++.+......|.. ....|+++|+||+|+.+.... .....+.+++++||+++.|+.
T Consensus 81 ~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 999999999999888777654432 257899999999998653322 334446789999999999999
Q ss_pred HHHHHHHHHH
Q psy5810 200 ELLVGIARQA 209 (250)
Q Consensus 200 ~lf~~l~~~i 209 (250)
+++.+|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988653
No 156
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.80 E-value=7.7e-19 Score=134.35 Aligned_cols=139 Identities=26% Similarity=0.332 Sum_probs=100.0
Q ss_pred EEcCCCCchhhhchhhhccccc---cccccccCc-----------eeEEEEEeCCCCcc--ccCCCccccccccccccCC
Q psy5810 56 VHSDTNHTQRCLTSMPFCSQVE---NFVQTYHPD-----------VFFIVYSDTNHTQR--CLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 56 iiG~~~vGKSsLi~~~~~~~~~---~~~~~~~~~-----------~~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~ 119 (250)
|+|.+|+|||||++ ++.+... ....+. .. ...+.+||++|+.. ..+..++. .
T Consensus 1 iiG~~~~GKStl~~-~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~----------~ 68 (157)
T cd00882 1 VVGDSGVGKTSLLN-RLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYR----------G 68 (157)
T ss_pred CCCcCCCcHHHHHH-HHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhc----------C
Confidence 58999999999998 7776322 111111 11 11577999999762 22233444 7
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHH-HHHHHHHhCCeEEEEecCCCCCH
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSD-GKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~-~~~~~~~~~~~~~evSa~~~~~I 198 (250)
+|++++|+|.+++.+++....|.............|+++++||+|+.......... ........+.+++++|+.++.|+
T Consensus 69 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 148 (157)
T cd00882 69 ADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENV 148 (157)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCCh
Confidence 99999999999999999998884444444456789999999999986533332222 34455566788999999999999
Q ss_pred HHHHHHHH
Q psy5810 199 DELLVGIA 206 (250)
Q Consensus 199 ~~lf~~l~ 206 (250)
.++++++.
T Consensus 149 ~~~~~~l~ 156 (157)
T cd00882 149 EELFEELA 156 (157)
T ss_pred HHHHHHHh
Confidence 99999986
No 157
>PRK00089 era GTPase Era; Reviewed
Probab=99.79 E-value=3e-19 Score=154.18 Aligned_cols=182 Identities=16% Similarity=0.091 Sum_probs=109.1
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccc----cccCc--------eeEEEEEeCCCCccccCCCccccccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPD--------VFFIVYSDTNHTQRCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~--------~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~ 116 (250)
++..+|+|+|.+|||||||+| ++++......+ +.... -..+.+|||+|...................
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin-~L~g~~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLN-ALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHH-HHhCCceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 455679999999999999999 78774211111 10000 026778999997532211100000011112
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEEEecCCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVETSVGLV 195 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~evSa~~~ 195 (250)
+.++|++++|+|+++..+ ....++....+ ..+.|+++|+||+|+...+.........+.+..+ .+++++||+++
T Consensus 82 ~~~~D~il~vvd~~~~~~--~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~ 156 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIG--PGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKG 156 (292)
T ss_pred HhcCCEEEEEEeCCCCCC--hhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCC
Confidence 238999999999998322 22233322222 2468999999999986332223334455555444 56999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810 196 YKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF 236 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (250)
.|+.++++++...+.......+....+....+.++..+.|+
T Consensus 157 ~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe 197 (292)
T PRK00089 157 DNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIRE 197 (292)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999988765444333333333444445554444
No 158
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.79 E-value=1.1e-18 Score=156.49 Aligned_cols=148 Identities=20% Similarity=0.104 Sum_probs=108.8
Q ss_pred EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCcc------ccCCCcccccccccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQR------CLTPMPFCSQVENFV 115 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~------~~~~~~~~~~~~~~~ 115 (250)
|+++|.+||||||||+ ++++.... ..+|..|.++ .+.+||+||... .+...+++
T Consensus 161 VglVG~pNaGKSTLLn-~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLr------- 232 (424)
T PRK12297 161 VGLVGFPNVGKSTLLS-VVSNAKPKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLR------- 232 (424)
T ss_pred EEEEcCCCCCHHHHHH-HHHcCCCccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHH-------
Confidence 9999999999999998 88875322 1234444433 578899999742 12222222
Q ss_pred ccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 116 QTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
.+.+++++++|+|+++. +.++++..|..++..+.. ..+.|+++|+||+|+.. ..+....+.+.++.+++++|
T Consensus 233 hier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----~~e~l~~l~~~l~~~i~~iS 308 (424)
T PRK12297 233 HIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----AEENLEEFKEKLGPKVFPIS 308 (424)
T ss_pred HHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----CHHHHHHHHHHhCCcEEEEe
Confidence 11258999999999865 678888888888866532 24789999999999843 23445667777778899999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~ 213 (250)
|+++.|++++++++.+.+...+
T Consensus 309 A~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 309 ALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCCCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999998776543
No 159
>KOG0075|consensus
Probab=99.79 E-value=1.5e-19 Score=135.92 Aligned_cols=144 Identities=14% Similarity=0.084 Sum_probs=113.9
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT 117 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~ 117 (250)
.+.+.++|..++|||||+| .... +.+...++|+++ .+.+||.+||. +.+|..|++
T Consensus 20 emel~lvGLq~sGKtt~Vn-~ia~--g~~~edmiptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR--------- 87 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVN-VIAR--GQYLEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR--------- 87 (186)
T ss_pred eeeEEEEeeccCCcceEEE-EEee--ccchhhhcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhh---------
Confidence 4559999999999999998 5554 466666666665 57799999996 788999999
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-----HHHHhCCeEEEEec
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-----LAYAWGVKFVETSV 192 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~evSa 192 (250)
+++++++|.|..+++.++..++.+..+.....-..+|++++|||.|+++ .++..+... -..+..+..|.+|+
T Consensus 88 -~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~sitdREvcC~siSc 164 (186)
T KOG0075|consen 88 -GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLSSITDREVCCFSISC 164 (186)
T ss_pred -cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCccccccceEEEEEEEE
Confidence 9999999999999999988888888776655667899999999999875 333332211 12233455799999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy5810 193 GLVYKTDELLVGIARQA 209 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i 209 (250)
++..||+.+..||++.-
T Consensus 165 ke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 165 KEKVNIDITLDWLIEHS 181 (186)
T ss_pred cCCccHHHHHHHHHHHh
Confidence 99999999999998753
No 160
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.79 E-value=3e-19 Score=133.51 Aligned_cols=99 Identities=17% Similarity=0.225 Sum_probs=69.3
Q ss_pred EEEEEcCCCCchhhhchhhhcccccc----ccccccCcee-----------EEEEEeCCCCcc--ccCCCcccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF-----------FIVYSDTNHTQR--CLTPMPFCSQVENFV 115 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~-----------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~ 115 (250)
||+|+|++|||||||++ +|++.... ..+..+.++. .+.+||++|++. ..+.....
T Consensus 1 kI~V~G~~g~GKTsLi~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~------- 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIR-RLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLK------- 72 (119)
T ss_dssp EEEEECSTTSSHHHHHH-HHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHH-------
T ss_pred CEEEECcCCCCHHHHHH-HHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhh-------
Confidence 69999999999999997 88874222 1112222221 567899999862 22222344
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHH---HHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAED---MLKTLWDSKYIGEKAVILVANKAD 164 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~---~~~~i~~~~~~~~~piilv~nK~D 164 (250)
++|++++|||+++++||+.+.+ |+..+... ..++|++|||||.|
T Consensus 73 ---~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~--~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 ---KADAVILVYDLSDPESLEYLSQLLKWLKNIRKR--DKNIPIILVGNKSD 119 (119)
T ss_dssp ---HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHH--SSCSEEEEEEE-TC
T ss_pred ---cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHcc--CCCCCEEEEEeccC
Confidence 7999999999999999999855 55555432 35699999999998
No 161
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.79 E-value=4.8e-19 Score=144.02 Aligned_cols=133 Identities=15% Similarity=0.072 Sum_probs=88.8
Q ss_pred EEEEEcCCCCchhhhchhhhcccccccccc----------------ccCce-----------eEEEEEeCCCCc--cccC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQT----------------YHPDV-----------FFIVYSDTNHTQ--RCLT 103 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~----------------~~~~~-----------~~i~i~Dt~g~~--~~~~ 103 (250)
+|+++|++|||||||++ +|+.....|... .+.++ ..+.+|||+|++ ...+
T Consensus 4 ~i~ivG~~~~GKTsL~~-~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~ 82 (194)
T cd01891 4 NIAIIAHVDHGKTTLVD-ALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGEV 82 (194)
T ss_pred EEEEEecCCCCHHHHHH-HHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHHH
Confidence 49999999999999998 777521222211 22221 167899999986 3344
Q ss_pred CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc-cCHHHHHHHHHH
Q psy5810 104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ-VTHSDGKKLAYA 182 (250)
Q Consensus 104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~~~~ 182 (250)
..+++ ++|++++|||+++.. +.....|+..+.. .++|+++|+||+|+...+. ...++..++...
T Consensus 83 ~~~~~----------~~d~~ilV~d~~~~~-~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~ 147 (194)
T cd01891 83 ERVLS----------MVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFIE 147 (194)
T ss_pred HHHHH----------hcCEEEEEEECCCCc-cHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 45555 899999999998742 3333445554432 4789999999999864332 123344444422
Q ss_pred -------hCCeEEEEecCCCCCHHHH
Q psy5810 183 -------WGVKFVETSVGLVYKTDEL 201 (250)
Q Consensus 183 -------~~~~~~evSa~~~~~I~~l 201 (250)
.+++++++||++|.|+.++
T Consensus 148 ~~~~~~~~~~~iv~~Sa~~g~~~~~~ 173 (194)
T cd01891 148 LGATEEQLDFPVLYASAKNGWASLNL 173 (194)
T ss_pred hCCccccCccCEEEeehhcccccccc
Confidence 3678999999999887443
No 162
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.78 E-value=7.7e-19 Score=159.74 Aligned_cols=145 Identities=18% Similarity=0.098 Sum_probs=98.3
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccc-cccCce-----------eEEEEEeCCCCccccCCCccccccccccccC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~ 118 (250)
.++|+++|.+|||||||+| ++++....+.. ..+.+. ..+.+|||+|...................++
T Consensus 215 ~~kV~ivG~~nvGKSSLln-~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~ 293 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLN-ALLGEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIE 293 (449)
T ss_pred CCEEEEECCCCCCHHHHHH-HHhCCCCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHH
Confidence 3679999999999999999 78774221222 222221 1578999999753110000000000011122
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
++|++++|+|.+++.++++...|.. ..+.|+++|+||+|+.+...+. ...+.+++++||++|.|+
T Consensus 294 ~aD~il~VvD~s~~~s~~~~~~l~~-------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI 358 (449)
T PRK05291 294 EADLVLLVLDASEPLTEEDDEILEE-------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGI 358 (449)
T ss_pred hCCEEEEEecCCCCCChhHHHHHHh-------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCH
Confidence 8999999999999988886655543 2578999999999986533221 334567999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy5810 199 DELLVGIARQAGL 211 (250)
Q Consensus 199 ~~lf~~l~~~i~~ 211 (250)
+++++++.+.+..
T Consensus 359 ~~L~~~L~~~l~~ 371 (449)
T PRK05291 359 DELREAIKELAFG 371 (449)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 163
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=8.3e-19 Score=160.82 Aligned_cols=175 Identities=17% Similarity=0.067 Sum_probs=109.2
Q ss_pred EEEEEEcCCCCchhhhchhhhccccc-cccccccCcee-----------EEEEEeCCCCccccCCC--cccccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF-----------FIVYSDTNHTQRCLTPM--PFCSQVENFVQT 117 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~--~~~~~~~~~~~~ 117 (250)
.+|+|+|.+|||||||+| ++++... ....+.+.+.. .+.+|||+|.+...... .+...... .+
T Consensus 39 ~~V~IvG~~nvGKSSL~n-rl~~~~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~--~~ 115 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVN-RILGRREAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQASVAEQAEV--AM 115 (472)
T ss_pred CEEEEEcCCCCCHHHHHH-HHhCcCcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHHHHHHHHHH--HH
Confidence 469999999999999999 7887421 12333343322 47789999976211110 01100111 12
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
+.||++|+|+|+++..++.. ..|...+.. .++|+++|+||+|+... ..+....+...++ ..+++||++|.|
T Consensus 116 ~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~---~~~~~~~~~~g~~-~~~~iSA~~g~g 186 (472)
T PRK03003 116 RTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERG---EADAAALWSLGLG-EPHPVSALHGRG 186 (472)
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCcc---chhhHHHHhcCCC-CeEEEEcCCCCC
Confidence 28999999999999866543 334444432 47999999999998542 1222222333333 257999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHH---------HHhhhhhhhhhhhhccCC
Q psy5810 198 TDELLVGIARQAGLNKKRNKLLA---------KKQKKMASYINNIKQFKW 238 (250)
Q Consensus 198 I~~lf~~l~~~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~ 238 (250)
++++|++++..+.+......... ......+++++++.+...
T Consensus 187 i~eL~~~i~~~l~~~~~~~~~~~~~~kI~iiG~~nvGKSSLin~l~~~~~ 236 (472)
T PRK03003 187 VGDLLDAVLAALPEVPRVGSASGGPRRVALVGKPNVGKSSLLNKLAGEER 236 (472)
T ss_pred cHHHHHHHHhhcccccccccccccceEEEEECCCCCCHHHHHHHHhCCCc
Confidence 99999999988765221111000 111367788888887653
No 164
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=3e-18 Score=152.86 Aligned_cols=180 Identities=14% Similarity=0.056 Sum_probs=119.5
Q ss_pred EEEEcCCCCchhhhchhhhccccccc----cccccCcee--------EEEEEeCCCCccccCCC--ccccccccccccCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENF----VQTYHPDVF--------FIVYSDTNHTQRCLTPM--PFCSQVENFVQTYH 119 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~----~~~~~~~~~--------~i~i~Dt~g~~~~~~~~--~~~~~~~~~~~~~~ 119 (250)
|+|+|.||||||||+| ++++..... .+|..+..+ .+.++||||..+..... .-..+.. .+.+
T Consensus 162 ValVG~PNaGKSTLln-~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~---~i~r 237 (390)
T PRK12298 162 VGLLGLPNAGKSTFIR-AVSAAKPKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK---HLER 237 (390)
T ss_pred EEEEcCCCCCHHHHHH-HHhCCcccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH---HHHh
Confidence 9999999999999999 788752221 122233322 47889999975321110 0001111 1227
Q ss_pred CcEEEEEEeCC---CHHhHHHHHHHHHHHHhhh-CCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEecC
Q psy5810 120 PDVFVIVYSVI---ERKTFKKAEDMLKTLWDSK-YIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSVG 193 (250)
Q Consensus 120 ad~iilV~D~~---~~~Sf~~~~~~~~~i~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa~ 193 (250)
++++++|+|++ +.+.++.+..|++++..+. ...+.|+++|+||+|+.....+ .+....+.+.++ .+++.+||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999998 5567788888888886542 1246899999999998643332 233444555544 368999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810 194 LVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (250)
++.|++++++++...+.+.....+....+.+..+.++..+.|++-
T Consensus 317 tg~GIdeLl~~I~~~L~~~~~~~~~~~~td~~~~~~~~EiiRE~~ 361 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQL 361 (390)
T ss_pred CCcCHHHHHHHHHHHhhhCcccCCcccccCccHHHHHHHHHHHHh
Confidence 999999999999998876554434333334455566667776653
No 165
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.78 E-value=3e-18 Score=135.29 Aligned_cols=136 Identities=19% Similarity=0.160 Sum_probs=89.3
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccc------cccC-----c-----eeEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQ------TYHP-----D-----VFFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~------~~~~-----~-----~~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
.|+|+|++|||||||++ ++... .+.. +... . -..+.+|||+|++ ..++...+.
T Consensus 2 ~i~iiG~~~~GKtsli~-~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~------ 72 (168)
T cd01887 2 VVTVMGHVDHGKTTLLD-KIRKT--NVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGAS------ 72 (168)
T ss_pred EEEEEecCCCCHHHHHH-HHHhc--ccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHh------
Confidence 38999999999999998 78764 2211 1100 0 1257899999985 233333444
Q ss_pred cccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC-HHHHHHHHH----H--hC
Q psy5810 115 VQTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT-HSDGKKLAY----A--WG 184 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~----~--~~ 184 (250)
.+|++++|+|+++. ++++.+. .+.. .++|+++|+||+|+.....-. .++...+.. . ..
T Consensus 73 ----~~d~il~v~d~~~~~~~~~~~~~~----~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (168)
T cd01887 73 ----LTDIAILVVAADDGVMPQTIEAIK----LAKA----ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGD 140 (168)
T ss_pred ----hcCEEEEEEECCCCccHHHHHHHH----HHHH----cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCc
Confidence 79999999999884 3343322 2222 468999999999986422100 111111111 1 13
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 185 VKFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 185 ~~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
++++++||++|.|+.++++++.+..
T Consensus 141 ~~~~~~Sa~~~~gi~~l~~~l~~~~ 165 (168)
T cd01887 141 VQIVPTSAKTGEGIDDLLEAILLLA 165 (168)
T ss_pred CcEEEeecccCCCHHHHHHHHHHhh
Confidence 5799999999999999999998754
No 166
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.77 E-value=1.6e-18 Score=135.02 Aligned_cols=142 Identities=19% Similarity=0.100 Sum_probs=89.8
Q ss_pred EEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCccccCCCcccccccc-ccccCCCc
Q psy5810 55 IVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRCLTPMPFCSQVEN-FVQTYHPD 121 (250)
Q Consensus 55 ~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~~~~~~~~~~~~~-~~~~~~ad 121 (250)
+++|.+|||||||++ ++.+....+.....++. ..+.+|||+|...... ......... ...++++|
T Consensus 1 ~l~G~~~~GKssl~~-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~-~~~~~~~~~~~~~~~~~d 78 (157)
T cd01894 1 AIVGRPNVGKSTLFN-RLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE-GISKEIREQAELAIEEAD 78 (157)
T ss_pred CccCCCCCCHHHHHH-HHhCCcEEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh-HHHHHHHHHHHHHHHhCC
Confidence 589999999999998 78764222222221111 1577999999863221 000000000 01112799
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCCCHHH
Q psy5810 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVYKTDE 200 (250)
Q Consensus 122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~I~~ 200 (250)
++++|+|..++.+.... .+...+ +. .+.|+++|+||+|+.+.... .......+. +++++||+++.|+++
T Consensus 79 ~ii~v~d~~~~~~~~~~-~~~~~~-~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 79 VILFVVDGREGLTPADE-EIAKYL-RK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred EEEEEEeccccCCccHH-HHHHHH-Hh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence 99999999876554432 122222 21 35899999999998653221 223344566 689999999999999
Q ss_pred HHHHHHHH
Q psy5810 201 LLVGIARQ 208 (250)
Q Consensus 201 lf~~l~~~ 208 (250)
+|+++++.
T Consensus 149 l~~~l~~~ 156 (157)
T cd01894 149 LLDAILEL 156 (157)
T ss_pred HHHHHHhh
Confidence 99999865
No 167
>KOG0076|consensus
Probab=99.77 E-value=3.1e-19 Score=137.84 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=118.8
Q ss_pred cccccEEEEEEEcCCCCchhhhchhh---hccc-----cccccccccCcee-------EEEEEeCCCCc--cccCCCccc
Q psy5810 46 VQTYHHVFFIVHSDTNHTQRCLTSMP---FCSQ-----VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFC 108 (250)
Q Consensus 46 ~~~~~~~ki~iiG~~~vGKSsLi~~~---~~~~-----~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~ 108 (250)
...|. |+|+|..++|||||+... |... .....++.|..++ .+.+||.+||+ +++|..||.
T Consensus 15 Ke~y~---vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~yY~ 91 (197)
T KOG0076|consen 15 KEDYS---VLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKKYYW 91 (197)
T ss_pred hhhhh---heeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeeccceeEEEEcCChHHHHHHHHHHHH
Confidence 34556 999999999999999611 2211 1233455555555 56689999998 899999999
Q ss_pred cccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH---HHH---
Q psy5810 109 SQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL---AYA--- 182 (250)
Q Consensus 109 ~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~---~~~--- 182 (250)
.+|++|+++|.+|++-|+....-++.+..+....++|+++.+||.|+.+.. ...+.... ++.
T Consensus 92 ----------~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~--~~~El~~~~~~~e~~~~ 159 (197)
T KOG0076|consen 92 ----------LAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAM--EAAELDGVFGLAELIPR 159 (197)
T ss_pred ----------HhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhh--hHHHHHHHhhhhhhcCC
Confidence 899999999999999999998888888887777899999999999997633 22333222 222
Q ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 183 WGVKFVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
...++.++||.+|+||++...|+++.+.+.
T Consensus 160 rd~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 160 RDNPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred ccCccccchhhhcccHHHHHHHHHHHHhhc
Confidence 246799999999999999999999988766
No 168
>COG1159 Era GTPase [General function prediction only]
Probab=99.77 E-value=3.8e-18 Score=143.36 Aligned_cols=185 Identities=15% Similarity=0.030 Sum_probs=128.8
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCccccCCCcccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRCLTPMPFCSQVENFV 115 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~ 115 (250)
..+..+|+|+|.||||||||+| ++++..-...+....|. ..+.+.||||-.+.-....-......+.
T Consensus 3 ~~ksGfVaIiGrPNvGKSTLlN-~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 3 KFKSGFVAIIGRPNVGKSTLLN-ALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred CceEEEEEEEcCCCCcHHHHHH-HHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 3566779999999999999999 88886222222221111 1677899999875543343333444555
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGL 194 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~ 194 (250)
++.++|+++||.|.+++..- -.+|+-+..+. .+.|++++.||+|.......-......+...... ..+++||++
T Consensus 82 sl~dvDlilfvvd~~~~~~~--~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~ 156 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP--GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALK 156 (298)
T ss_pred HhccCcEEEEEEeccccCCc--cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccc
Confidence 66699999999999885432 22333333222 4689999999999755333112222222233333 489999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810 195 VYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (250)
|.|+..+.+.+...+.+.....+....+.+..+..+..+.|++-
T Consensus 157 g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~ 200 (298)
T COG1159 157 GDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKL 200 (298)
T ss_pred cCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHH
Confidence 99999999999999999888888888888888888888888753
No 169
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.76 E-value=7.5e-18 Score=153.23 Aligned_cols=151 Identities=15% Similarity=0.065 Sum_probs=103.6
Q ss_pred EEEEcCCCCchhhhchhhhccccccc----cccccCcee-------EEEEEeCCCCcc------ccCCCccccccccccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENF----VQTYHPDVF-------FIVYSDTNHTQR------CLTPMPFCSQVENFVQ 116 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~----~~~~~~~~~-------~i~i~Dt~g~~~------~~~~~~~~~~~~~~~~ 116 (250)
|+|||.+|||||||++ ++++..... .+|..+..+ .+.+|||+|... .+...+++ .
T Consensus 162 V~LVG~PNAGKSTLln-~Ls~akpkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~gLg~~fLr-------h 233 (500)
T PRK12296 162 VGLVGFPSAGKSSLIS-ALSAAKPKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGKGLGLDFLR-------H 233 (500)
T ss_pred EEEEEcCCCCHHHHHH-HHhcCCccccccCcccccceEEEEEECCeEEEEEECCCCccccchhhHHHHHHHH-------H
Confidence 9999999999999998 887752221 233333333 677899999642 11112221 1
Q ss_pred cCCCcEEEEEEeCCCH----HhHHHHHHHHHHHHhhh----------CCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH
Q psy5810 117 TYHPDVFVIVYSVIER----KTFKKAEDMLKTLWDSK----------YIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~----~Sf~~~~~~~~~i~~~~----------~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 182 (250)
+..+|++|+|+|+++. +.++++..|..++..+. ...+.|+|+|+||+|+.+.+.+. +........
T Consensus 234 ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~ 312 (500)
T PRK12296 234 IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEA 312 (500)
T ss_pred HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHH
Confidence 1269999999999863 35566666666665543 22468999999999986533321 222233345
Q ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 183 WGVKFVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
.+++++++||+++.|+++++.+|.+.+...+
T Consensus 313 ~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 313 RGWPVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 5789999999999999999999998876544
No 170
>KOG1673|consensus
Probab=99.76 E-value=8.7e-18 Score=127.58 Aligned_cols=154 Identities=12% Similarity=0.119 Sum_probs=115.4
Q ss_pred cccccEEEEEEEcCCCCchhhhchhhhccc--cccccccccCcee-----------EEEEEeCCCCcc--ccCCCccccc
Q psy5810 46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQTYHPDVF-----------FIVYSDTNHTQR--CLTPMPFCSQ 110 (250)
Q Consensus 46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~~~~~~~-----------~i~i~Dt~g~~~--~~~~~~~~~~ 110 (250)
.+..-.+||.++||+..|||||+- .|+++ +..+..+.|...- .+.|||.+||++ .+.+..-.
T Consensus 15 ~~n~Vslkv~llGD~qiGKTs~mv-kYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~-- 91 (205)
T KOG1673|consen 15 VSNLVSLKVGLLGDAQIGKTSLMV-KYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACK-- 91 (205)
T ss_pred cccceEEEEEeecccccCceeeeh-hhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeec--
Confidence 445567899999999999999997 88874 1223333333322 466899999983 33455445
Q ss_pred cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc-----CCCccCHHHHHHHHHHhCC
Q psy5810 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE-----RRRQVTHSDGKKLAYAWGV 185 (250)
Q Consensus 111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-----~~~~v~~~~~~~~~~~~~~ 185 (250)
++-+++|+||++.+.+++.+.+|+.+....+ ..-+ -|+||+|.|+- +.+.--..+++.+|+.++.
T Consensus 92 --------dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAi-PilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA 161 (205)
T KOG1673|consen 92 --------DSVAILFMFDLTRRSTLNSIKEWYRQARGLN-KTAI-PILVGTKYDLFIDLPPELQETISRQARKYAKVMNA 161 (205)
T ss_pred --------CcEEEEEEEecCchHHHHHHHHHHHHHhccC-Cccc-eEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 8999999999999999999999999875542 2233 46789999971 1111123457889999999
Q ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 186 KFVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 186 ~~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
+.+.+|+....||+.+|..+..++..-
T Consensus 162 sL~F~Sts~sINv~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 162 SLFFCSTSHSINVQKIFKIVLAKLFNL 188 (205)
T ss_pred cEEEeeccccccHHHHHHHHHHHHhCC
Confidence 999999999999999999998887653
No 171
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.76 E-value=2.2e-17 Score=149.86 Aligned_cols=157 Identities=18% Similarity=0.097 Sum_probs=100.4
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccccc-ccccCce-----------eEEEEEeCCCCcccc--CC--Ccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDV-----------FFIVYSDTNHTQRCL--TP--MPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~-----------~~i~i~Dt~g~~~~~--~~--~~~~~~~~~ 113 (250)
..++|+++|.+|||||||++ ++++...... +..+.+. ..+.+|||+|..+.. .. ..+. ....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin-~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~-~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVN-ALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYS-VLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHH-HHHCCCeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHH-HHHH
Confidence 45789999999999999998 7876422111 1111111 157899999975221 10 0110 1111
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-HH----hCCeEE
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-YA----WGVKFV 188 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-~~----~~~~~~ 188 (250)
...++.+|++|+|+|.+++.+..+.. ++..+.+ .+.|+++|+||+|+... ....++..... .. .+++++
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~vi 322 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKD-EKTREEFKKELRRKLPFLDFAPIV 322 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCC-HHHHHHHHHHHHHhcccCCCCceE
Confidence 11223899999999999988877653 3343322 46899999999998621 11122222222 22 246899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
++||++|.|++++|+++.+.+.....
T Consensus 323 ~~SA~~g~~v~~l~~~i~~~~~~~~~ 348 (429)
T TIGR03594 323 FISALTGQGVDKLLDAIDEVYENANR 348 (429)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999987665433
No 172
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.76 E-value=1.3e-17 Score=131.65 Aligned_cols=150 Identities=18% Similarity=0.113 Sum_probs=94.5
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccccccccccc-C-----------ceeEEEEEeCCCCccccCCC----ccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYH-P-----------DVFFIVYSDTNHTQRCLTPM----PFCSQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~-~-----------~~~~i~i~Dt~g~~~~~~~~----~~~~~~~~~ 114 (250)
.++|+++|++|+|||||++ ++.+.......... . .-..+.+|||+|........ .+. .....
T Consensus 2 ~~~i~i~G~~~~GKstli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~-~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVN-ALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYS-VLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHH-HHhCccceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHH-HHHHH
Confidence 4679999999999999998 78774211111100 0 01257799999975321100 000 01111
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-HHh----CCeEEE
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-YAW----GVKFVE 189 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-~~~----~~~~~e 189 (250)
..+.++|++++|+|.+++.+..... ++..+.. .+.|+++++||+|+.+......++..+.. +.+ +.++++
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLR-IAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHH-HHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 1122799999999999987765543 3333322 36899999999998654322233322222 333 367999
Q ss_pred EecCCCCCHHHHHHHHHH
Q psy5810 190 TSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~ 207 (250)
+||+++.|+.++++++.+
T Consensus 155 ~Sa~~~~~i~~~~~~l~~ 172 (174)
T cd01895 155 ISALTGQGVDKLFDAIDE 172 (174)
T ss_pred EeccCCCCHHHHHHHHHH
Confidence 999999999999999875
No 173
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.74 E-value=1.3e-17 Score=133.99 Aligned_cols=139 Identities=17% Similarity=0.064 Sum_probs=95.0
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccc------------------cCc-----------eeEEEEEeCCCCcc--cc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTY------------------HPD-----------VFFIVYSDTNHTQR--CL 102 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~------------------~~~-----------~~~i~i~Dt~g~~~--~~ 102 (250)
|+|+|.+|+|||||++ .+++. ...... +.+ -..+.+|||+|... ..
T Consensus 2 v~v~G~~~~GKStlln-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~ 78 (189)
T cd00881 2 VGIAGHVDHGKTTLTE-RLLYV--TGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSE 78 (189)
T ss_pred EEEEeCCCCCHHHHHH-HHHHh--cCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHH
Confidence 8999999999999998 77663 211111 111 12678999999752 33
Q ss_pred CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHHHHHHHH
Q psy5810 103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV--THSDGKKLA 180 (250)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~ 180 (250)
+..++. .+|++++|+|.+++.+... ..++..+.. .+.|+++|+||+|+.....+ ..++..+..
T Consensus 79 ~~~~~~----------~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~ 143 (189)
T cd00881 79 VIRGLS----------VSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELL 143 (189)
T ss_pred HHHHHH----------hcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHH
Confidence 334444 7999999999998765543 334444432 57999999999998642211 123333333
Q ss_pred HH--------------hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 181 YA--------------WGVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 181 ~~--------------~~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+. ...+++++||++|.|++++|.++.+.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 144 GLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred ccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 33 3467999999999999999999998763
No 174
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.74 E-value=1.8e-17 Score=155.16 Aligned_cols=143 Identities=17% Similarity=0.072 Sum_probs=97.6
Q ss_pred cCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCCCcEEEEE
Q psy5810 58 SDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIV 126 (250)
Q Consensus 58 G~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV 126 (250)
|++|||||||+| ++.+.........+.+++ .+.+|||+|+++.............+....++|++++|
T Consensus 1 G~pNvGKSSL~N-~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~V 79 (591)
T TIGR00437 1 GNPNVGKSTLFN-ALTGANQTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVVNV 79 (591)
T ss_pred CCCCCCHHHHHH-HHhCCCCeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEEEE
Confidence 899999999999 888753222222223322 56799999987422111001111122222378999999
Q ss_pred EeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy5810 127 YSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIA 206 (250)
Q Consensus 127 ~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~ 206 (250)
+|.++.+. ...+..++.+ .++|+++|+||+|+.+.+.+. .+.+.+++..+++++++||++|.|++++++++.
T Consensus 80 vDat~ler---~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~ 151 (591)
T TIGR00437 80 VDASNLER---NLYLTLQLLE----LGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAIR 151 (591)
T ss_pred ecCCcchh---hHHHHHHHHh----cCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHH
Confidence 99997532 2233333322 478999999999986655554 346788889999999999999999999999998
Q ss_pred HHH
Q psy5810 207 RQA 209 (250)
Q Consensus 207 ~~i 209 (250)
+.+
T Consensus 152 ~~~ 154 (591)
T TIGR00437 152 KAI 154 (591)
T ss_pred HHh
Confidence 753
No 175
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.73 E-value=2.3e-17 Score=129.04 Aligned_cols=149 Identities=19% Similarity=0.138 Sum_probs=91.7
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCc------------eeEEEEEeCCCCccccC--CCccccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD------------VFFIVYSDTNHTQRCLT--PMPFCSQVENFVQ 116 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~------------~~~i~i~Dt~g~~~~~~--~~~~~~~~~~~~~ 116 (250)
..+|+++|.+|+|||||++ ++.+...........+ ...+.+|||+|...... ...+..... ..
T Consensus 3 ~~~i~~~G~~g~GKttl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~--~~ 79 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLN-ALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAW--SA 79 (168)
T ss_pred eeEEEEECCCCCCHHHHHH-HHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHH--HH
Confidence 4679999999999999998 7766311111100001 12567999999752111 011000000 01
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHH-HHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC-CeEEEEecCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAED-MLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG-VKFVETSVGL 194 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~-~~~~evSa~~ 194 (250)
+..+|++++|+|.+++.+ .... +...+.. .+.|+++|+||+|+........+....+....+ .+++++|+++
T Consensus 80 ~~~~d~i~~v~d~~~~~~--~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 153 (168)
T cd04163 80 LKDVDLVLFVVDASEPIG--EGDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALK 153 (168)
T ss_pred HHhCCEEEEEEECCCccC--chHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEecc
Confidence 127999999999998722 2222 3333322 368999999999986322222333344444443 5799999999
Q ss_pred CCCHHHHHHHHHHH
Q psy5810 195 VYKTDELLVGIARQ 208 (250)
Q Consensus 195 ~~~I~~lf~~l~~~ 208 (250)
+.|+++++++|.+.
T Consensus 154 ~~~~~~l~~~l~~~ 167 (168)
T cd04163 154 GENVDELLEEIVKY 167 (168)
T ss_pred CCChHHHHHHHHhh
Confidence 99999999999764
No 176
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=3.3e-17 Score=132.85 Aligned_cols=157 Identities=13% Similarity=0.014 Sum_probs=96.1
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce--------eEEEEEeCCCCccccCCC----cccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV--------FFIVYSDTNHTQRCLTPM----PFCSQVEN 113 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~--------~~i~i~Dt~g~~~~~~~~----~~~~~~~~ 113 (250)
....++|+++|++|||||||++ ++++.. ....++.+.+. ..+.+|||+|......+. .+......
T Consensus 21 ~~~~~~v~ivG~~~~GKSsli~-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 21 PDDGPEIAFAGRSNVGKSSLIN-ALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCCCEEEEEcCCCCCHHHHHH-HHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 4466779999999999999998 888731 22223332221 257789999954211110 01111111
Q ss_pred cccc-CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc--cCHHHHHHHHHHhCCeEEEE
Q psy5810 114 FVQT-YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ--VTHSDGKKLAYAWGVKFVET 190 (250)
Q Consensus 114 ~~~~-~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~~~~~~~~~~~~ev 190 (250)
+... ..++++++|+|.+++.+.... .+...+ .. .+.|+++++||+|+.+... ...+++.+.......+++++
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l-~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~ 174 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDL-QMIEWL-KE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILF 174 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHH-HHHHHH-HH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEE
Confidence 1111 145788999998876544331 111222 21 4689999999999854222 11233444444446789999
Q ss_pred ecCCCCCHHHHHHHHHHHHH
Q psy5810 191 SVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~ 210 (250)
||+++.|++++++.+.+.+.
T Consensus 175 Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 175 SSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EcCCCCCHHHHHHHHHHHhc
Confidence 99999999999999886653
No 177
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=9.2e-17 Score=153.90 Aligned_cols=156 Identities=12% Similarity=0.084 Sum_probs=101.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccc-cCcee-----------EEEEEeCCCCccccCC----Ccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY-HPDVF-----------FIVYSDTNHTQRCLTP----MPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~-~~~~~-----------~i~i~Dt~g~~~~~~~----~~~~~~~~~ 113 (250)
..+||+++|.+|||||||+| ++.+....+...+ +.+.. .+.+|||+|..+.... .++. ....
T Consensus 449 ~~~kI~ivG~~nvGKSSLin-~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~-~~r~ 526 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLN-QLTHEERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYS-SLRT 526 (712)
T ss_pred CCcEEEEECCCCCCHHHHHH-HHhCccccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHH-HHHH
Confidence 34789999999999999999 7877422122211 11111 5679999997532211 1221 1111
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-HHHHh----CCeEE
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-LAYAW----GVKFV 188 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~~----~~~~~ 188 (250)
...++++|++++|+|.++..+++++. ++..+.. .+.|+++|+||+|+.+... .+.... +...+ ..+++
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEE
Confidence 12234899999999999998888765 3344432 4789999999999854211 111221 11211 24579
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
++||++|.|+.++|+.+.+.+.....
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999987765433
No 178
>KOG0072|consensus
Probab=99.71 E-value=3.1e-17 Score=123.05 Aligned_cols=149 Identities=14% Similarity=0.030 Sum_probs=114.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcc-ccccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCS-QVENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~-~~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
..+.++++|..|+|||++++ ++.. ......++++..++ ++++||..||- +.+|..||. +
T Consensus 17 ~e~rililgldGaGkttIly-rlqvgevvttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcYy~----------d 85 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILY-RLQVGEVVTTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCYYA----------D 85 (182)
T ss_pred cceEEEEeeccCCCeeEEEE-EcccCcccccCCCCCcCccccccccccceeeEccCcccccHHHHHHhc----------c
Confidence 55679999999999999998 5544 33345566666665 67899999986 889999999 9
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH-----HHHHHHhCCeEEEEecCC
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG-----KKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-----~~~~~~~~~~~~evSa~~ 194 (250)
.|++|+|.|.+|++...-....+-.+.+.....+..++|++||.|.+... +..|+ ..-.++.-+.++++||.+
T Consensus 86 t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~--t~~E~~~~L~l~~Lk~r~~~Iv~tSA~k 163 (182)
T KOG0072|consen 86 TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL--TRSEVLKMLGLQKLKDRIWQIVKTSAVK 163 (182)
T ss_pred cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh--hHHHHHHHhChHHHhhheeEEEeecccc
Confidence 99999999999987665555555555555566778899999999986422 22222 222344457899999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy5810 195 VYKTDELLVGIARQAGL 211 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~ 211 (250)
|+|+++..+||.+.+..
T Consensus 164 g~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 164 GEGLDPAMDWLQRPLKS 180 (182)
T ss_pred ccCCcHHHHHHHHHHhc
Confidence 99999999999987754
No 179
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.71 E-value=3.9e-17 Score=132.51 Aligned_cols=146 Identities=16% Similarity=0.023 Sum_probs=91.9
Q ss_pred EEEEEEcCCCCchhhhchhhhccc------cccc-----cccccCc---------------------eeEEEEEeCCCCc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQ------VENF-----VQTYHPD---------------------VFFIVYSDTNHTQ 99 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~------~~~~-----~~~~~~~---------------------~~~i~i~Dt~g~~ 99 (250)
++|+++|+.|+|||||++ +|+.. .... ..+.+.. -..+.+|||+|+.
T Consensus 1 ~~i~i~G~~~~GKstLi~-~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAK-ALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCCHHHHHH-HHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 469999999999999998 78751 0000 0111111 2267899999985
Q ss_pred cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc--cCHHHHH
Q psy5810 100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ--VTHSDGK 177 (250)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--v~~~~~~ 177 (250)
.. ...++. .+..+|++++|+|.++.........|. +... .+.|+++++||+|+..... ...++..
T Consensus 80 ~~-~~~~~~-------~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~ 146 (192)
T cd01889 80 SL-IRTIIG-------GAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMK 146 (192)
T ss_pred HH-HHHHHH-------HHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHH
Confidence 21 111111 112689999999999854444333332 1111 3579999999999853211 1222232
Q ss_pred HHH-H------HhCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 178 KLA-Y------AWGVKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 178 ~~~-~------~~~~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
+.. . ..+++++++||++|.|++++++++..++.-
T Consensus 147 ~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 147 KKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 221 1 135789999999999999999999987753
No 180
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.71 E-value=1.1e-16 Score=131.13 Aligned_cols=102 Identities=15% Similarity=0.121 Sum_probs=75.0
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCc---e-----------eEEEEEeCCCCc--cccCCCccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD---V-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~---~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~ 116 (250)
.|+++|++|||||+|++ +|... .+..++.++ + ..+.+||++|++ +..+..+++
T Consensus 2 ~vll~G~~~sGKTsL~~-~l~~~--~~~~t~~s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~-------- 70 (203)
T cd04105 2 TVLLLGPSDSGKTALFT-KLTTG--KYRSTVTSIEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLK-------- 70 (203)
T ss_pred eEEEEcCCCCCHHHHHH-HHhcC--CCCCccCcEeecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHh--------
Confidence 38999999999999998 78773 343333221 1 147799999987 333344455
Q ss_pred cCCC-cEEEEEEeCCCH-HhHHHHHHHHHHHHhhh--CCCCCcEEEEeeCCCccC
Q psy5810 117 TYHP-DVFVIVYSVIER-KTFKKAEDMLKTLWDSK--YIGEKAVILVANKADLER 167 (250)
Q Consensus 117 ~~~a-d~iilV~D~~~~-~Sf~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~ 167 (250)
++ +++|+|+|.++. .++..+..|+..+.... ....+|+++++||+|+..
T Consensus 71 --~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 71 --NSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred --ccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 67 999999999998 78888877776664322 235899999999999853
No 181
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.70 E-value=1.9e-16 Score=151.76 Aligned_cols=150 Identities=12% Similarity=0.053 Sum_probs=106.2
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccC--CCcc-cc-cccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLT--PMPF-CS-QVENFV 115 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~--~~~~-~~-~~~~~~ 115 (250)
.++|+++|.+|||||||+| ++.+.........|.|++ ++.+|||||.+.... ..+. .. ....+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN-~Ltg~~~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l 81 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFN-QLTGARQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (772)
T ss_pred ceEEEEECCCCCCHHHHHH-HHhCCCCccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHHH
Confidence 3569999999999999999 888864444444555554 578999999874221 1100 00 001121
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
....+|++++|+|.++.+.- ..|..++.+ .++|++++.||+|+.+.+.+. .+.+++.+.+|++++++||+++
T Consensus 82 ~~~~aD~vI~VvDat~ler~---l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i~-id~~~L~~~LG~pVvpiSA~~g 153 (772)
T PRK09554 82 LSGDADLLINVVDASNLERN---LYLTLQLLE----LGIPCIVALNMLDIAEKQNIR-IDIDALSARLGCPVIPLVSTRG 153 (772)
T ss_pred hccCCCEEEEEecCCcchhh---HHHHHHHHH----cCCCEEEEEEchhhhhccCcH-HHHHHHHHHhCCCEEEEEeecC
Confidence 12278999999999986542 234445533 368999999999986555553 4567788899999999999999
Q ss_pred CCHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQA 209 (250)
Q Consensus 196 ~~I~~lf~~l~~~i 209 (250)
.|++++.+.+....
T Consensus 154 ~GIdeL~~~I~~~~ 167 (772)
T PRK09554 154 RGIEALKLAIDRHQ 167 (772)
T ss_pred CCHHHHHHHHHHhh
Confidence 99999999887654
No 182
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.70 E-value=9.2e-17 Score=146.06 Aligned_cols=173 Identities=17% Similarity=0.085 Sum_probs=104.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccc-cccccCce-----------eEEEEEeCCCCccccCCCcccccccc-ccccC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENF-VQTYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVEN-FVQTY 118 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~-~~~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~-~~~~~ 118 (250)
.+|+|+|.+|||||||+| ++.+..... ....+.+. ..+.+|||+|.+.... .+...+.+. ...++
T Consensus 2 ~~I~ivG~~~vGKStL~n-~l~~~~~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~-~~~~~~~~~~~~~~~ 79 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFN-RLTGKRDAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD-GFEKQIREQAELAIE 79 (435)
T ss_pred CEEEEECCCCCCHHHHHH-HHhCCCceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch-hHHHHHHHHHHHHHH
Confidence 369999999999999999 787742211 11222211 1678999999874111 111111111 11223
Q ss_pred CCcEEEEEEeCCCHHhHH--HHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCC
Q psy5810 119 HPDVFVIVYSVIERKTFK--KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLV 195 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~ 195 (250)
++|++++|+|.+++.+.. .+..|+.. .+.|+++|+||+|+.+. .....++ ..+++. ++++||++|
T Consensus 80 ~ad~il~vvd~~~~~~~~~~~~~~~l~~-------~~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 80 EADVILFVVDGRAGLTPADEEIAKILRK-------SNKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred hCCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCC
Confidence 899999999998864432 33445443 27899999999996431 1222222 345664 899999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhhh-HH-------HHHhhhhhhhhhhhhccCC
Q psy5810 196 YKTDELLVGIARQAGLNKKRNK-LL-------AKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~ 238 (250)
.|+.++|+++............ .. .......+.+++++.+..+
T Consensus 148 ~gv~~l~~~I~~~~~~~~~~~~~~~~~~v~ivG~~n~GKStlin~ll~~~~ 198 (435)
T PRK00093 148 RGIGDLLDAILEELPEEEEEDEEDEPIKIAIIGRPNVGKSSLINALLGEER 198 (435)
T ss_pred CCHHHHHHHHHhhCCccccccccccceEEEEECCCCCCHHHHHHHHhCCCc
Confidence 9999999999874322111100 00 0011366777777776543
No 183
>KOG0074|consensus
Probab=99.69 E-value=6.3e-17 Score=121.10 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=114.2
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee--------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF--------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~--------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~ 116 (250)
+-+.++|+++|-.++|||||+. .+.+. ..+..+|-|..+. ++.+||.+||. +.+|..||.
T Consensus 14 t~rEirilllGldnAGKTT~LK-qL~sED~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr~IRpyWsNYye-------- 84 (185)
T KOG0074|consen 14 TRREIRILLLGLDNAGKTTFLK-QLKSEDPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQRGIRPYWSNYYE-------- 84 (185)
T ss_pred CcceEEEEEEecCCCcchhHHH-HHccCChhhccccCCcceEEEeecCcEEEEEEecCCccccchhhhhhhh--------
Confidence 3566889999999999999997 77765 3334555555554 67789999997 899999999
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH----HHHHhCCeEEEEec
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK----LAYAWGVKFVETSV 192 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~----~~~~~~~~~~evSa 192 (250)
+.|++|+|+|.+|..-|+++..-+-++........+|+++.+||.|+--...+... +.. ..+..-+.+.+|||
T Consensus 85 --nvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~eei-a~klnl~~lrdRswhIq~csa 161 (185)
T KOG0074|consen 85 --NVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVEEI-ALKLNLAGLRDRSWHIQECSA 161 (185)
T ss_pred --ccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchHHH-HHhcchhhhhhceEEeeeCcc
Confidence 99999999999999999998877777766555678999999999997433322211 111 11233466889999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy5810 193 GLVYKTDELLVGIARQ 208 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~ 208 (250)
.+++|+.+-.+|+...
T Consensus 162 ls~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 162 LSLEGSTDGSDWVQSN 177 (185)
T ss_pred ccccCccCcchhhhcC
Confidence 9999999998888754
No 184
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.69 E-value=1.3e-16 Score=144.77 Aligned_cols=171 Identities=18% Similarity=0.102 Sum_probs=105.1
Q ss_pred EEEEEcCCCCchhhhchhhhcccccccc-ccccCcee-----------EEEEEeCCCCccccCCCccccccc-cccccCC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVE-NFVQTYH 119 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~-~~~~~~~ 119 (250)
||+|+|++|||||||+| ++++...... ...+.+.. .+.+|||+|....-.. ......+ ...+++.
T Consensus 1 ~i~ivG~~nvGKStL~n-~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~-~~~~~~~~~~~~~~~ 78 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFN-RLTGKRDAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDG-LDKQIREQAEIAIEE 78 (429)
T ss_pred CEEEECCCCCCHHHHHH-HHhCCCcceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchh-HHHHHHHHHHHHHhh
Confidence 48999999999999999 7887432221 22222211 5789999996411100 0000000 1112238
Q ss_pred CcEEEEEEeCCCHHhHHH--HHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy5810 120 PDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVY 196 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~ 196 (250)
+|++++|+|..+..+..+ +..|+.+ .+.|+++|+||+|+.+.... ..+ ...+++ +++++||+.|.
T Consensus 79 ad~vl~vvD~~~~~~~~d~~i~~~l~~-------~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~ 146 (429)
T TIGR03594 79 ADVILFVVDGREGLTPEDEEIAKWLRK-------SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGR 146 (429)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHH-------hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCC
Confidence 999999999988644433 3334332 36899999999998643221 122 345566 69999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhHHH---------HHhhhhhhhhhhhhccC
Q psy5810 197 KTDELLVGIARQAGLNKKRNKLLA---------KKQKKMASYINNIKQFK 237 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 237 (250)
|+.++++++...+........... ......+++++++.+..
T Consensus 147 gv~~ll~~i~~~l~~~~~~~~~~~~~~~v~ivG~~~~GKSsLin~l~~~~ 196 (429)
T TIGR03594 147 GIGDLLDAILELLPEEEEEEEEEDGPIKIAIIGRPNVGKSTLVNALLGEE 196 (429)
T ss_pred ChHHHHHHHHHhcCcccccccccCCceEEEEECCCCCCHHHHHHHHHCCC
Confidence 999999999987754322111110 00135677777777654
No 185
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.69 E-value=1.5e-16 Score=148.93 Aligned_cols=142 Identities=13% Similarity=0.129 Sum_probs=101.4
Q ss_pred EEEEEcCCCCchhhhchhhhccccc-----cccccc----------cCce----------------eEEEEEeCCCCcc-
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVE-----NFVQTY----------HPDV----------------FFIVYSDTNHTQR- 100 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~-----~~~~~~----------~~~~----------------~~i~i~Dt~g~~~- 100 (250)
+|+|+|..++|||||++ +|+.... .+..++ |.++ ..+.+|||+|+..
T Consensus 5 Ni~IIGh~d~GKTTL~~-rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~dF 83 (595)
T TIGR01393 5 NFSIIAHIDHGKSTLAD-RLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF 83 (595)
T ss_pred EEEEECCCCCCHHHHHH-HHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHHH
Confidence 49999999999999998 7765311 111111 2221 2567999999863
Q ss_pred -ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810 101 -CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179 (250)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 179 (250)
..+..++. .+|++|+|+|+++..+++....|...+. .++|+++|+||+|+.+.. ......++
T Consensus 84 ~~~v~~~l~----------~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~el 146 (595)
T TIGR01393 84 SYEVSRSLA----------ACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSAD--PERVKKEI 146 (595)
T ss_pred HHHHHHHHH----------hCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC--HHHHHHHH
Confidence 33344445 8999999999999877777766655431 468999999999986421 12233456
Q ss_pred HHHhCCe---EEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 180 AYAWGVK---FVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 180 ~~~~~~~---~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
.+.+++. ++++||++|.|+.++|+++++.+...
T Consensus 147 ~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 147 EEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 6666653 89999999999999999999877543
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.68 E-value=3e-16 Score=121.36 Aligned_cols=145 Identities=19% Similarity=0.088 Sum_probs=91.9
Q ss_pred EEcCCCCchhhhchhhhcccccc----ccc-cccCc--------eeEEEEEeCCCCccccCCCcc-ccccccccccCCCc
Q psy5810 56 VHSDTNHTQRCLTSMPFCSQVEN----FVQ-TYHPD--------VFFIVYSDTNHTQRCLTPMPF-CSQVENFVQTYHPD 121 (250)
Q Consensus 56 iiG~~~vGKSsLi~~~~~~~~~~----~~~-~~~~~--------~~~i~i~Dt~g~~~~~~~~~~-~~~~~~~~~~~~ad 121 (250)
|+|..|+|||||++ ++.+.... ... +.... ...+.+|||+|.......... ...... .++.+|
T Consensus 1 i~G~~gsGKstl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~--~~~~~d 77 (163)
T cd00880 1 LFGRTNAGKSSLLN-ALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARR--VLERAD 77 (163)
T ss_pred CcCCCCCCHHHHHH-HHhCccccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHHHH--HHHhCC
Confidence 58999999999998 77764111 110 11111 115789999997632221110 000000 112799
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHH---HHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS---DGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~---~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
++++|+|.++..+..... |..... ..+.|+++|+||+|+......... .........+.+++++||+++.|+
T Consensus 78 ~il~v~~~~~~~~~~~~~-~~~~~~----~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v 152 (163)
T cd00880 78 LILFVVDADLRADEEEEK-LLELLR----ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGI 152 (163)
T ss_pred EEEEEEeCCCCCCHHHHH-HHHHHH----hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCH
Confidence 999999999987776654 444432 258999999999998543322111 112233344678999999999999
Q ss_pred HHHHHHHHHH
Q psy5810 199 DELLVGIARQ 208 (250)
Q Consensus 199 ~~lf~~l~~~ 208 (250)
.++++++.+.
T Consensus 153 ~~l~~~l~~~ 162 (163)
T cd00880 153 DELREALIEA 162 (163)
T ss_pred HHHHHHHHhh
Confidence 9999999864
No 187
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.68 E-value=6.3e-16 Score=129.25 Aligned_cols=146 Identities=15% Similarity=-0.031 Sum_probs=92.8
Q ss_pred EEEEEcCCCCchhhhchhhhcccccccc----ccccCcee-------EEEEEeCCCCccccC--CCccccccccccccCC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVF-------FIVYSDTNHTQRCLT--PMPFCSQVENFVQTYH 119 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~-------~i~i~Dt~g~~~~~~--~~~~~~~~~~~~~~~~ 119 (250)
+|+++|.+|||||||++ ++.+...... .|..+..+ .+++|||+|+.+... ....+..... .++
T Consensus 2 ~v~lvG~~~~GKStLl~-~Ltg~~~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~~~l~~---~~~ 77 (233)
T cd01896 2 RVALVGFPSVGKSTLLS-KLTNTKSEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGRQVIAV---ART 77 (233)
T ss_pred EEEEECCCCCCHHHHHH-HHHCCCccccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHHHHHHh---hcc
Confidence 58999999999999998 8887422111 12222221 578999999753211 1111111111 128
Q ss_pred CcEEEEEEeCCCHH-hHHHHHHHHHHH----------------------------------------Hhhh---------
Q psy5810 120 PDVFVIVYSVIERK-TFKKAEDMLKTL----------------------------------------WDSK--------- 149 (250)
Q Consensus 120 ad~iilV~D~~~~~-Sf~~~~~~~~~i----------------------------------------~~~~--------- 149 (250)
+|++++|+|.++++ ..+.+.+.++.. .+..
T Consensus 78 ad~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~ 157 (233)
T cd01896 78 ADLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLI 157 (233)
T ss_pred CCEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEE
Confidence 99999999998865 333333333211 0000
Q ss_pred -------------C--CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 150 -------------Y--IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 150 -------------~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
. ...+|+++|+||+|+. +.+++..+++. ..++++||+++.|++++|+.+.+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~-----~~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 158 REDITVDDLIDVIEGNRVYIPCLYVYNKIDLI-----SIEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred ccCCCHHHHHHHHhCCceEeeEEEEEECccCC-----CHHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 0 1236999999999974 34555556553 4589999999999999999998765
No 188
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=2.4e-16 Score=143.30 Aligned_cols=155 Identities=17% Similarity=0.094 Sum_probs=98.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccc-cccCce-----------eEEEEEeCCCCcccc--CC--Ccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPDV-----------FFIVYSDTNHTQRCL--TP--MPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~~-----------~~i~i~Dt~g~~~~~--~~--~~~~~~~~~ 113 (250)
..++|+++|.+|||||||++ ++++....... ..+.+. ..+.+|||+|..+.. .. ..+. ....
T Consensus 172 ~~~~v~ivG~~n~GKStlin-~ll~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~-~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLIN-ALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYS-VIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHH-HHhCCCceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHH-HHHH
Confidence 46889999999999999999 77764221111 111111 157799999964211 10 0010 1111
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH-HHHHH----hCCeEE
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK-KLAYA----WGVKFV 188 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-~~~~~----~~~~~~ 188 (250)
...++.+|++|+|+|++++.+..+.. ++..+.+ .+.|+++|+||+|+.+... .++.. .+... ..++++
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~--~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKT--MEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHH--HHHHHHHHHHhcccccCCCEE
Confidence 11223799999999999987776653 3333322 4689999999999853211 11111 11111 246899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
++||++|.|+.++|+.+.+......
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999987665433
No 189
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.67 E-value=1.7e-16 Score=127.43 Aligned_cols=145 Identities=13% Similarity=0.004 Sum_probs=88.6
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee--------EEEEEeCCCCccccCC----Cccccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF--------FIVYSDTNHTQRCLTP----MPFCSQVENF 114 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~----~~~~~~~~~~ 114 (250)
.+..+|+|+|++|+|||||++ ++.+.. ....++.+.+.. .+.+|||+|....... ..+......+
T Consensus 16 ~~~~~i~ivG~~~~GKStlin-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 94 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLIN-ALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEY 94 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHH-HHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCChhHHHHHHHHHHHH
Confidence 445669999999999999999 787742 122223333321 4689999995421110 0111111112
Q ss_pred ccc-CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC--ccCHHHHHHHHHHhC--CeEEE
Q psy5810 115 VQT-YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR--QVTHSDGKKLAYAWG--VKFVE 189 (250)
Q Consensus 115 ~~~-~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~v~~~~~~~~~~~~~--~~~~e 189 (250)
.+. ..++++++|+|.+++.+..+.. ++..+.. .+.|+++++||+|+.... ....++.++.....+ +.+++
T Consensus 95 l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~ 169 (179)
T TIGR03598 95 LEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQL 169 (179)
T ss_pred HHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEE
Confidence 111 1468999999999876555542 2233322 468999999999985321 122344555555544 47999
Q ss_pred EecCCCCCHH
Q psy5810 190 TSVGLVYKTD 199 (250)
Q Consensus 190 vSa~~~~~I~ 199 (250)
+||++|+|++
T Consensus 170 ~Sa~~g~gi~ 179 (179)
T TIGR03598 170 FSSLKKTGID 179 (179)
T ss_pred EECCCCCCCC
Confidence 9999999973
No 190
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.67 E-value=5.7e-16 Score=144.60 Aligned_cols=134 Identities=18% Similarity=0.159 Sum_probs=91.8
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccccccc----ccCce---------e-EEEEEeCCCCcc--ccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQT----YHPDV---------F-FIVYSDTNHTQR--CLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~----~~~~~---------~-~i~i~Dt~g~~~--~~~~~~~~~~~~~ 113 (250)
+..+|+++|..++|||||++ ++.+. .+... +..++ . .+.+|||||++. .++...+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~-~l~~~--~v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~rga~----- 157 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLD-SIRKT--KVAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRARGAK----- 157 (587)
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHhC--CcccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHHhhhc-----
Confidence 44679999999999999998 77663 22211 11111 1 678999999863 33333444
Q ss_pred ccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC------
Q psy5810 114 FVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG------ 184 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~------ 184 (250)
.+|++|+|+|.++ +++++.+. .. ...++|+++++||+|+.+. ..++..+.+...+
T Consensus 158 -----~aDiaILVVda~dgv~~qT~e~i~----~~----~~~~vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~ 221 (587)
T TIGR00487 158 -----VTDIVVLVVAADDGVMPQTIEAIS----HA----KAANVPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDW 221 (587)
T ss_pred -----cCCEEEEEEECCCCCCHhHHHHHH----HH----HHcCCCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhc
Confidence 7999999999987 34444322 12 1247899999999998542 2344444433332
Q ss_pred ---CeEEEEecCCCCCHHHHHHHHHH
Q psy5810 185 ---VKFVETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 185 ---~~~~evSa~~~~~I~~lf~~l~~ 207 (250)
.+++++||++|.|+.++|+++..
T Consensus 222 ~~~~~~v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 222 GGDTIFVPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCCceEEEEECCCCCChHHHHHhhhh
Confidence 46999999999999999999874
No 191
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.67 E-value=4.3e-16 Score=149.29 Aligned_cols=176 Identities=15% Similarity=0.053 Sum_probs=106.4
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee-----------EEEEEeCCCCccccCCC--ccccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF-----------FIVYSDTNHTQRCLTPM--PFCSQVENFVQ 116 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~--~~~~~~~~~~~ 116 (250)
..+|+|+|++|||||||+| ++++... ...+..|.+.. .+.+|||+|.+...... .+.... ...
T Consensus 275 ~~~V~IvG~~nvGKSSL~n-~l~~~~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~--~~~ 351 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVN-RILGRREAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGIDSAIASQA--QIA 351 (712)
T ss_pred CcEEEEECCCCCCHHHHHH-HHhCCCceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHHHHHHHHH--HHH
Confidence 3569999999999999999 8887422 12223333221 57789999976321110 011000 111
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
+..+|++|+|+|.++.....+ ..|...+.. .+.|+++|+||+|+.... ......+...++ ..+++||++|.
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d-~~i~~~Lr~----~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~ 422 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD-ERIVRMLRR----AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGR 422 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH-HHHHHHHHh----cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCC
Confidence 228999999999987432211 235454432 579999999999985421 111222222222 35799999999
Q ss_pred CHHHHHHHHHHHHHhhhhhh----hHH-------HHHhhhhhhhhhhhhccCC
Q psy5810 197 KTDELLVGIARQAGLNKKRN----KLL-------AKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~~~~~----~~~-------~~~~~~~~~~~~~~~~~~~ 238 (250)
||.++|++++..+....... ... .......+++++++.+.+.
T Consensus 423 GI~eLl~~i~~~l~~~~~~~~a~~~~~~~kI~ivG~~nvGKSSLin~l~~~~~ 475 (712)
T PRK09518 423 GVGDLLDEALDSLKVAEKTSGFLTPSGLRRVALVGRPNVGKSSLLNQLTHEER 475 (712)
T ss_pred CchHHHHHHHHhcccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhCccc
Confidence 99999999998876532111 000 0011367788888887753
No 192
>KOG1707|consensus
Probab=99.66 E-value=1.6e-16 Score=143.12 Aligned_cols=154 Identities=19% Similarity=0.166 Sum_probs=110.4
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCceeE-------------EEEEeCCCCccccCCCccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFF-------------IVYSDTNHTQRCLTPMPFCSQVENF 114 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~-------------i~i~Dt~g~~~~~~~~~~~~~~~~~ 114 (250)
.-+.++|+++|+.||||||||- .++. +.|.+.+.+.... ..|.||+...... ... .
T Consensus 6 t~kdVRIvliGD~G~GKtSLIm-SL~~--eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~--~~l------~ 74 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIM-SLLE--EEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDDR--LCL------R 74 (625)
T ss_pred CccceEEEEECCCCccHHHHHH-HHHh--hhccccccccCCccccCCccCcCcCceEEEecccccchh--HHH------H
Confidence 3456779999999999999994 8888 7777777766653 3455665332110 000 0
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCC-CCCcEEEEeeCCCccCCCccCHHH-HHHHHHHhC-Ce-EEE
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYI-GEKAVILVANKADLERRRQVTHSD-GKKLAYAWG-VK-FVE 189 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~-~~~~~~~~~-~~-~~e 189 (250)
..++.||++.+||+++++++.+.+. .|+..+.+..+. .++|+||||||+|......-+.+. ...+..++. +. .++
T Consensus 75 ~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtcie 154 (625)
T KOG1707|consen 75 KEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIE 154 (625)
T ss_pred HHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHh
Confidence 1223799999999999999999996 699999776433 479999999999986543333233 344444442 33 799
Q ss_pred EecCCCCCHHHHHHHHHHHHHhh
Q psy5810 190 TSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
|||++..++.++|...-+.++-.
T Consensus 155 cSA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 155 CSALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred hhhhhhhhhHhhhhhhhheeecc
Confidence 99999999999999998877654
No 193
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=3.2e-15 Score=132.30 Aligned_cols=161 Identities=16% Similarity=0.076 Sum_probs=108.3
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccc-ccccccCcee-----------EEEEEeCCCCcc--ccCC-Cccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDVF-----------FIVYSDTNHTQR--CLTP-MPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~~-----------~i~i~Dt~g~~~--~~~~-~~~~~~~~~~ 114 (250)
+.+||+|+|.||||||||+| +++++... ..+..|.|.+ ++.+.||+|.-+ .... ..+.+.....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN-~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLIN-AILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CceEEEEEeCCCCCchHHHH-HhccCceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhhH
Confidence 57999999999999999999 78876222 2222233322 677899999752 1111 2223344455
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-h----CCeEEE
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA-W----GVKFVE 189 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~----~~~~~e 189 (250)
.++..+|++++|.|.+.+-+-++.+ ....+ .....++++|.||+|+.+....+.++.....+. + ..+.+.
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~-ia~~i----~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~ 330 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLR-IAGLI----EEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVF 330 (444)
T ss_pred hHHhhcCEEEEEEECCCCchHHHHH-HHHHH----HHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEE
Confidence 5556899999999999987655543 22222 336889999999999865433444444333322 2 356899
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810 190 TSVGLVYKTDELLVGIARQAGLNKKRN 216 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~~~~~~~ 216 (250)
+||++|.++.++|..+.........+-
T Consensus 331 iSA~~~~~i~~l~~~i~~~~~~~~~ri 357 (444)
T COG1160 331 ISALTGQGLDKLFEAIKEIYECATRRI 357 (444)
T ss_pred EEecCCCChHHHHHHHHHHHHHhcccc
Confidence 999999999999999987665543333
No 194
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=135.16 Aligned_cols=173 Identities=18% Similarity=0.054 Sum_probs=110.3
Q ss_pred EEEEEcCCCCchhhhchhhhcccccc-ccccccCcee-----------EEEEEeCCCCccccCCCccccccc-cccccCC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVE-NFVQTYH 119 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~-~~~~~~~ 119 (250)
.|+|+|.||||||||+| |+++.... ..++.|.|.. .+.+.||+|-+..-...+...+.+ ...++..
T Consensus 5 ~VAIVGRPNVGKSTLFN-RL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 5 VVAIVGRPNVGKSTLFN-RLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred EEEEECCCCCcHHHHHH-HHhCCeeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHh
Confidence 49999999999999999 88886332 3344454443 677899999763221222222222 2233448
Q ss_pred CcEEEEEEeCCCHHhH--HHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCCC
Q psy5810 120 PDVFVIVYSVIERKTF--KKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLVY 196 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf--~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~ 196 (250)
||+++||.|....-+- +.+.+|+. ..+.|++||+||+|-.. .++.......+|+. .+.+||..|.
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr-------~~~kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~ 151 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILR-------RSKKPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGR 151 (444)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH-------hcCCCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhcc
Confidence 9999999999874332 33344444 15799999999999532 22222223345654 8999999999
Q ss_pred CHHHHHHHHHHHHH-hhhhhhhHH--HHH-------hhhhhhhhhhhhccCC
Q psy5810 197 KTDELLVGIARQAG-LNKKRNKLL--AKK-------QKKMASYINNIKQFKW 238 (250)
Q Consensus 197 ~I~~lf~~l~~~i~-~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~ 238 (250)
|+.++.+.++..+. ......... .-+ .-+.++.+|++.++-+
T Consensus 152 Gi~dLld~v~~~l~~~e~~~~~~~~~~ikiaiiGrPNvGKSsLiN~ilgeeR 203 (444)
T COG1160 152 GIGDLLDAVLELLPPDEEEEEEEETDPIKIAIIGRPNVGKSSLINAILGEER 203 (444)
T ss_pred CHHHHHHHHHhhcCCcccccccccCCceEEEEEeCCCCCchHHHHHhccCce
Confidence 99999999999874 221111111 000 0367777777777655
No 195
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.64 E-value=8.7e-16 Score=125.85 Aligned_cols=109 Identities=20% Similarity=0.197 Sum_probs=70.4
Q ss_pred eEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH----HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810 88 FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----KTFKKAEDMLKTLWDSKYIGEKAVILVANKA 163 (250)
Q Consensus 88 ~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~ 163 (250)
..+.+|||+|++.... .++ ..++.+|++++|+|++++ .+++.+..| . .. ...|+++|+||+
T Consensus 83 ~~i~~iDtPG~~~~~~-~~~-------~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~-~---~~---~~~~iiivvNK~ 147 (203)
T cd01888 83 RHVSFVDCPGHEILMA-TML-------SGAAVMDGALLLIAANEPCPQPQTSEHLAAL-E---IM---GLKHIIIVQNKI 147 (203)
T ss_pred cEEEEEECCChHHHHH-HHH-------HhhhcCCEEEEEEECCCCCCCcchHHHHHHH-H---Hc---CCCcEEEEEEch
Confidence 3678999999763211 111 112268999999999873 344443332 1 11 224799999999
Q ss_pred CccCCCcc--CHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 164 DLERRRQV--THSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 164 Dl~~~~~v--~~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
|+.+.... ..++..++.+.. +++++++||++|.|++++|+++.+.+..
T Consensus 148 Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 148 DLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred hccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 98542211 123334444432 5679999999999999999999876654
No 196
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.63 E-value=1.3e-15 Score=116.56 Aligned_cols=139 Identities=17% Similarity=0.095 Sum_probs=97.7
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER 132 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~ 132 (250)
||++||+.|||||||++ ++.+....+..|....+.. .+.||||.+-.. +.+|+..+.... +||.+++|.|.+++
T Consensus 3 rimliG~~g~GKTTL~q-~L~~~~~~~~KTq~i~~~~-~~IDTPGEyiE~-~~~y~aLi~ta~---dad~V~ll~dat~~ 76 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQ-ALNGEEIRYKKTQAIEYYD-NTIDTPGEYIEN-PRFYHALIVTAQ---DADVVLLLQDATEP 76 (143)
T ss_pred eEEEECCCCCCHHHHHH-HHcCCCCCcCccceeEecc-cEEECChhheeC-HHHHHHHHHHHh---hCCEEEEEecCCCC
Confidence 59999999999999996 7877544454444444332 347999987332 233332222222 79999999999987
Q ss_pred HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCCCCHHHHHHHHH
Q psy5810 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLVYKTDELLVGIA 206 (250)
Q Consensus 133 ~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~I~~lf~~l~ 206 (250)
.+.-. ..+... -+.|+|-|.||+|+... .-..+.++++.+..|+. +|++|+.+|+||+++.++|-
T Consensus 77 ~~~~p-----P~fa~~---f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 77 RSVFP-----PGFASM---FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred CccCC-----chhhcc---cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence 54211 111111 35799999999999731 23467788888888886 89999999999999998874
No 197
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.63 E-value=1.9e-15 Score=141.51 Aligned_cols=140 Identities=15% Similarity=0.119 Sum_probs=96.1
Q ss_pred EEEEEcCCCCchhhhchhhhcccc-cccccc--ccCce-----------eEEEEEeCCCCcccc--CCCccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQV-ENFVQT--YHPDV-----------FFIVYSDTNHTQRCL--TPMPFCSQVENFVQ 116 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~--~~~~~-----------~~i~i~Dt~g~~~~~--~~~~~~~~~~~~~~ 116 (250)
.|+++|..++|||||++ +|.+.. +.+... .+.++ ..+.+||+||.++.. ....+.
T Consensus 2 ~I~iiG~~d~GKTTLi~-aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~-------- 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLK-ALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGG-------- 72 (581)
T ss_pred EEEEECCCCCCHHHHHH-HHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhc--------
Confidence 48999999999999998 887531 222211 11221 257799999986322 122233
Q ss_pred cCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCcc--CHHHHHHHHHHh----CCe
Q psy5810 117 TYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQV--THSDGKKLAYAW----GVK 186 (250)
Q Consensus 117 ~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v--~~~~~~~~~~~~----~~~ 186 (250)
++|++++|+|+++ +++++.+. ++ .. .++| +++|+||+|+.+...+ ..++..++.+.. +++
T Consensus 73 --~aD~aILVVDa~~G~~~qT~ehl~-il----~~---lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ 142 (581)
T TIGR00475 73 --GIDAALLVVDADEGVMTQTGEHLA-VL----DL---LGIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAK 142 (581)
T ss_pred --cCCEEEEEEECCCCCcHHHHHHHH-HH----HH---cCCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCc
Confidence 7999999999998 56665543 22 11 3567 9999999998653322 234455666554 468
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 187 FVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 187 ~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
++++||++|.|+++++..+...+..
T Consensus 143 ii~vSA~tG~GI~eL~~~L~~l~~~ 167 (581)
T TIGR00475 143 IFKTSAKTGQGIGELKKELKNLLES 167 (581)
T ss_pred EEEEeCCCCCCchhHHHHHHHHHHh
Confidence 9999999999999999988766543
No 198
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.63 E-value=1.7e-15 Score=118.73 Aligned_cols=147 Identities=14% Similarity=0.057 Sum_probs=88.0
Q ss_pred EEEEcCCCCchhhhchhhhcc--ccccccccccCcee--------EEEEEeCCCCccccCC----CccccccccccccC-
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS--QVENFVQTYHPDVF--------FIVYSDTNHTQRCLTP----MPFCSQVENFVQTY- 118 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~--~~~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~----~~~~~~~~~~~~~~- 118 (250)
|+++|++|+|||||++ .+.+ .......+.+.+.. .+.+|||+|-.....+ ..+......+...+
T Consensus 2 i~l~G~~g~GKTtL~~-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (170)
T cd01876 2 IAFAGRSNVGKSSLIN-ALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE 80 (170)
T ss_pred EEEEcCCCCCHHHHHH-HHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence 8999999999999998 7883 21222222222221 5678999984211000 01111111222211
Q ss_pred CCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHHHHHHHHH--HhCCeEEEEec
Q psy5810 119 HPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV--THSDGKKLAY--AWGVKFVETSV 192 (250)
Q Consensus 119 ~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~--~~~~~~~evSa 192 (250)
..+++++++|.++.. ....+.+|+... ..|+++|+||+|+...... .........+ ....+++++||
T Consensus 81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-------~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa 153 (170)
T cd01876 81 NLKGVVLLIDSRHGPTEIDLEMLDWLEEL-------GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSS 153 (170)
T ss_pred hhhEEEEEEEcCcCCCHhHHHHHHHHHHc-------CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 468899999998763 223344555433 4799999999998432111 1122222222 23456899999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy5810 193 GLVYKTDELLVGIARQ 208 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~ 208 (250)
+++.++.+++++|.+.
T Consensus 154 ~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 154 LKGQGIDELRALIEKW 169 (170)
T ss_pred CCCCCHHHHHHHHHHh
Confidence 9999999999999864
No 199
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.62 E-value=2.3e-15 Score=142.80 Aligned_cols=138 Identities=16% Similarity=0.178 Sum_probs=93.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccc------ccccccC---------ceeEEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN------FVQTYHP---------DVFFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~------~~~~~~~---------~~~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
+...|+|+|..++|||||++ ++...... ...+++. .-..+.+|||||++ ..++..++.
T Consensus 243 r~p~V~IvGhvdvGKTSLld-~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~---- 317 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLD-KIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGAN---- 317 (742)
T ss_pred cCCEEEEECCCCCCHHHHHH-HHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHH----
Confidence 44569999999999999998 77663111 0001111 11367899999986 333344444
Q ss_pred cccccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH-------HHH
Q psy5810 113 NFVQTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL-------AYA 182 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-------~~~ 182 (250)
.+|++|+|+|+++. ++++.+.. + ...++|+|+++||+|+.+.. .++..+. ...
T Consensus 318 ------~aDiaILVVDA~dGv~~QT~E~I~~----~----k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~ 380 (742)
T CHL00189 318 ------VTDIAILIIAADDGVKPQTIEAINY----I----QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEK 380 (742)
T ss_pred ------HCCEEEEEEECcCCCChhhHHHHHH----H----HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHh
Confidence 79999999999884 45544332 2 12478999999999986421 2222222 223
Q ss_pred hC--CeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 183 WG--VKFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 183 ~~--~~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
++ ++++++||++|.||.++|+++....
T Consensus 381 ~g~~vpvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 381 WGGDTPMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hCCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence 33 6899999999999999999988753
No 200
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.62 E-value=3.4e-15 Score=139.21 Aligned_cols=138 Identities=16% Similarity=0.079 Sum_probs=89.9
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccc------ccccccCce-----------------------eEEEEEeCCCCc--c
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVEN------FVQTYHPDV-----------------------FFIVYSDTNHTQ--R 100 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~------~~~~~~~~~-----------------------~~i~i~Dt~g~~--~ 100 (250)
.-|+++|..++|||||++ ++.+.... ...+++.+. ..+.+|||+|++ .
T Consensus 5 piV~IiG~~d~GKTSLln-~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLD-KIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CEEEEECCCCCCHHHHHH-HHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 349999999999999998 77763110 111111110 127799999986 3
Q ss_pred ccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc------
Q psy5810 101 CLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV------ 171 (250)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v------ 171 (250)
.++..++. .+|++++|+|+++ +++++.+..+ +. .++|+++++||+|+.+....
T Consensus 84 ~l~~~~~~----------~aD~~IlVvD~~~g~~~qt~e~i~~l-----~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f 145 (590)
T TIGR00491 84 NLRKRGGA----------LADLAILIVDINEGFKPQTQEALNIL-----RM---YKTPFVVAANKIDRIPGWRSHEGRPF 145 (590)
T ss_pred HHHHHHHh----------hCCEEEEEEECCcCCCHhHHHHHHHH-----HH---cCCCEEEEEECCCccchhhhccCchH
Confidence 44444555 8999999999997 6666655422 11 37899999999998531100
Q ss_pred ------CHHHH------------HHHHH------------Hh--CCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 172 ------THSDG------------KKLAY------------AW--GVKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 172 ------~~~~~------------~~~~~------------~~--~~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
..+.. .++.+ ++ ..+++++||++|+|+.+++.++...
T Consensus 146 ~e~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l 214 (590)
T TIGR00491 146 MESFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGL 214 (590)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHH
Confidence 00000 01111 12 2579999999999999999988654
No 201
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.61 E-value=2.5e-15 Score=136.34 Aligned_cols=143 Identities=13% Similarity=0.064 Sum_probs=90.3
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhcccccccc-------------------------------ccccCcee-------
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-------------------------------QTYHPDVF------- 88 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-------------------------------~~~~~~~~------- 88 (250)
.+...++|+++|..++|||||+. +++....... ..-+.++.
T Consensus 3 ~~~~~~~v~i~Ghvd~GKSTL~~-~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~ 81 (426)
T TIGR00483 3 KEKEHINVAFIGHVDHGKSTTVG-HLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFE 81 (426)
T ss_pred CCCceeEEEEEeccCCcHHHHHH-HHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEc
Confidence 35566889999999999999998 6764211110 01122211
Q ss_pred ----EEEEEeCCCCccccCC--CccccccccccccCCCcEEEEEEeCCCHHhHHHHHH-HHHHHHhhhCCCCCcEEEEee
Q psy5810 89 ----FIVYSDTNHTQRCLTP--MPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAED-MLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 89 ----~i~i~Dt~g~~~~~~~--~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilv~n 161 (250)
.+.+|||+|+++.... ..+. .+|++++|+|+++.+++...+. +...+.+. ....|+++++|
T Consensus 82 ~~~~~i~iiDtpGh~~f~~~~~~~~~----------~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~--~~~~~iIVviN 149 (426)
T TIGR00483 82 TDKYEVTIVDCPGHRDFIKNMITGAS----------QADAAVLVVAVGDGEFEVQPQTREHAFLART--LGINQLIVAIN 149 (426)
T ss_pred cCCeEEEEEECCCHHHHHHHHHhhhh----------hCCEEEEEEECCCCCcccCCchHHHHHHHHH--cCCCeEEEEEE
Confidence 6789999998632211 1122 7999999999999864322111 11112222 12357999999
Q ss_pred CCCccCCCc----cCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q psy5810 162 KADLERRRQ----VTHSDGKKLAYAWG-----VKFVETSVGLVYKTDELL 202 (250)
Q Consensus 162 K~Dl~~~~~----v~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~lf 202 (250)
|+|+.+... ...++...+++..+ ++++++||++|.|+.+.+
T Consensus 150 K~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 150 KMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred ChhccCccHHHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 999853111 12345666777665 579999999999998744
No 202
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.60 E-value=6.1e-15 Score=141.01 Aligned_cols=135 Identities=20% Similarity=0.191 Sum_probs=90.6
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccc--------cccCc-e----eEEEEEeCCCCcc--ccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ--------TYHPD-V----FFIVYSDTNHTQR--CLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~--------~~~~~-~----~~i~i~Dt~g~~~--~~~~~~~~~~~~~~ 114 (250)
+...|+|+|..++|||||++ ++... .+.. +++.. + ..+.+|||+|++. .++...+.
T Consensus 289 R~pvV~ImGhvd~GKTSLl~-~Lr~~--~v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~rga~------ 359 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLD-AIRKT--NVAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRARGAQ------ 359 (787)
T ss_pred CCCEEEEECCCCCCHHHHHH-HHHhC--CccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHHhhhh------
Confidence 44559999999999999998 77652 1111 11110 0 2678999999863 22222333
Q ss_pred cccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH-------HHHHHhC
Q psy5810 115 VQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK-------KLAYAWG 184 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-------~~~~~~~ 184 (250)
.+|++|||+|.++ +++++.+. .. ...++|+|+++||+|+.+.. .+... .++..++
T Consensus 360 ----~aDiaILVVdAddGv~~qT~e~i~----~a----~~~~vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g 424 (787)
T PRK05306 360 ----VTDIVVLVVAADDGVMPQTIEAIN----HA----KAAGVPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWG 424 (787)
T ss_pred ----hCCEEEEEEECCCCCCHhHHHHHH----HH----HhcCCcEEEEEECccccccC---HHHHHHHHHHhcccHHHhC
Confidence 7899999999988 44544332 11 22578999999999985421 12221 1233444
Q ss_pred --CeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 185 --VKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 185 --~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
++++++||++|.||.++|+++...
T Consensus 425 ~~vp~vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 425 GDTIFVPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred CCceEEEEeCCCCCCchHHHHhhhhh
Confidence 679999999999999999998753
No 203
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.60 E-value=4e-15 Score=132.00 Aligned_cols=150 Identities=15% Similarity=0.096 Sum_probs=98.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee------------EEEEEeCCCCccccCCCccccccc-cccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF------------FIVYSDTNHTQRCLTPMPFCSQVE-NFVQ 116 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~------------~i~i~Dt~g~~~~~~~~~~~~~~~-~~~~ 116 (250)
+-+|++|+|.||||||||+| .+++.....++.+..|.. .+.+.||+|....- ...-+-.++ .+.+
T Consensus 216 ~G~kvvIiG~PNvGKSSLLN-aL~~~d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~-d~VE~iGIeRs~~~ 293 (454)
T COG0486 216 EGLKVVIIGRPNVGKSSLLN-ALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETD-DVVERIGIERAKKA 293 (454)
T ss_pred cCceEEEECCCCCcHHHHHH-HHhcCCceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCc-cHHHHHHHHHHHHH
Confidence 44679999999999999999 888864444444333332 67789999964111 111111111 2233
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
+..||.+++|+|.+.+.+-.+.. .+. ....+.|+++|.||.|+........ .....+.+++.+||++|.
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~~-~~~-----~~~~~~~~i~v~NK~DL~~~~~~~~-----~~~~~~~~~i~iSa~t~~ 362 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDLA-LIE-----LLPKKKPIIVVLNKADLVSKIELES-----EKLANGDAIISISAKTGE 362 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhHH-HHH-----hcccCCCEEEEEechhcccccccch-----hhccCCCceEEEEecCcc
Confidence 34899999999999863222211 111 1236789999999999976332111 111224468999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy5810 197 KTDELLVGIARQAGLN 212 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~ 212 (250)
|++++.+.+.+.+...
T Consensus 363 Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 363 GLDALREAIKQLFGKG 378 (454)
T ss_pred CHHHHHHHHHHHHhhc
Confidence 9999999999877665
No 204
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.60 E-value=6.8e-15 Score=138.01 Aligned_cols=142 Identities=13% Similarity=0.138 Sum_probs=98.5
Q ss_pred EEEEEcCCCCchhhhchhhhcccccc---------ccc------cccCce----------------eEEEEEeCCCCcc-
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVEN---------FVQ------TYHPDV----------------FFIVYSDTNHTQR- 100 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~---------~~~------~~~~~~----------------~~i~i~Dt~g~~~- 100 (250)
+|+|+|..++|||||+. +++...+. +.+ +.+.++ ..+.+|||+|+..
T Consensus 9 Ni~IiGhvd~GKTTL~~-rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~dF 87 (600)
T PRK05433 9 NFSIIAHIDHGKSTLAD-RLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVDF 87 (600)
T ss_pred EEEEECCCCCCHHHHHH-HHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHHH
Confidence 49999999999999998 77542111 110 111111 2577999999863
Q ss_pred -ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810 101 -CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179 (250)
Q Consensus 101 -~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 179 (250)
..+..++. .+|++|+|+|.++....+....|.... . .++|+++|+||+|+.+.. ......++
T Consensus 88 ~~~v~~sl~----------~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~--~~~v~~ei 150 (600)
T PRK05433 88 SYEVSRSLA----------ACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAAD--PERVKQEI 150 (600)
T ss_pred HHHHHHHHH----------HCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCccc--HHHHHHHH
Confidence 33344444 799999999999976666666665432 1 468999999999986422 12223445
Q ss_pred HHHhCCe---EEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 180 AYAWGVK---FVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 180 ~~~~~~~---~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
.+.+++. ++++||++|.|+.++++++...+...
T Consensus 151 ~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 151 EDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 5555654 89999999999999999999877643
No 205
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.54 E-value=1.1e-13 Score=108.61 Aligned_cols=144 Identities=12% Similarity=0.016 Sum_probs=107.1
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccc-----------ccc---ccccCcee--------EEEEEeCCCCc--cccC
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVE-----------NFV---QTYHPDVF--------FIVYSDTNHTQ--RCLT 103 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-----------~~~---~~~~~~~~--------~i~i~Dt~g~~--~~~~ 103 (250)
.....||+|+|+.++||||++. .++.... ... .|...+++ .+.++|||||+ +.+|
T Consensus 7 k~~~~KIvv~G~~~agKtTfv~-~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 7 KMIETKIVVIGPVGAGKTTFVR-ALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMW 85 (187)
T ss_pred cccceeEEEEcccccchhhHHH-HhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHHHHHHH
Confidence 4456789999999999999995 7766411 001 22233333 56788999997 6777
Q ss_pred CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh
Q psy5810 104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183 (250)
Q Consensus 104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~ 183 (250)
..+.+ ++.++|++.|.+++..| .....++.+... ..+|+++.+||.|+.. ..++++..++.+..
T Consensus 86 ~~l~~----------ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~--a~ppe~i~e~l~~~ 149 (187)
T COG2229 86 EILSR----------GAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFD--ALPPEKIREALKLE 149 (187)
T ss_pred HHHhC----------CcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCC--CCCHHHHHHHHHhc
Confidence 88888 99999999999999998 444555544221 2299999999999976 34566666665544
Q ss_pred --CCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 184 --GVKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 184 --~~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
..+.++++|..+++..+.+..+...
T Consensus 150 ~~~~~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 150 LLSVPVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred cCCCceeeeecccchhHHHHHHHHHhh
Confidence 7889999999999999988888765
No 206
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.54 E-value=6.2e-14 Score=131.15 Aligned_cols=140 Identities=15% Similarity=0.099 Sum_probs=89.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc------ccccccccCce--------------e---------EEEEEeCCCCcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV------ENFVQTYHPDV--------------F---------FIVYSDTNHTQR 100 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~------~~~~~~~~~~~--------------~---------~i~i~Dt~g~~~ 100 (250)
+...|+++|..++|||||++ ++.+.. .....+++.+. . .+.+|||||++.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~-~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLD-KIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCcEEEEECCCCCCHHHHHH-HHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 34459999999999999998 776531 00111221111 0 157899999863
Q ss_pred --ccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc----
Q psy5810 101 --CLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV---- 171 (250)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v---- 171 (250)
.++...+. .+|++++|+|.++ +++++.+..+ .. .++|+++++||+|+......
T Consensus 84 f~~~~~~~~~----------~aD~~IlVvDa~~g~~~qt~e~i~~~----~~----~~vpiIvviNK~D~~~~~~~~~~~ 145 (586)
T PRK04004 84 FTNLRKRGGA----------LADIAILVVDINEGFQPQTIEAINIL----KR----RKTPFVVAANKIDRIPGWKSTEDA 145 (586)
T ss_pred HHHHHHHhHh----------hCCEEEEEEECCCCCCHhHHHHHHHH----HH----cCCCEEEEEECcCCchhhhhhcCc
Confidence 22233333 7999999999998 6777665422 11 47899999999998421110
Q ss_pred --------CHH-----------HHHHHHHHh---------------CCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 172 --------THS-----------DGKKLAYAW---------------GVKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 172 --------~~~-----------~~~~~~~~~---------------~~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
... +...+.... .++++++||++|.|+.+++..+...
T Consensus 146 ~~~e~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 146 PFLESIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 000 000111111 2568999999999999999887643
No 207
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.54 E-value=4.4e-14 Score=128.19 Aligned_cols=142 Identities=13% Similarity=0.099 Sum_probs=86.4
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccccccc-------------------------------ccccCcee---------
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-------------------------------QTYHPDVF--------- 88 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-------------------------------~~~~~~~~--------- 88 (250)
...+.|+++|..++|||||++ +++....... ...|.|+.
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~-~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~ 82 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVG-RLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD 82 (425)
T ss_pred CCEEEEEEECCCCCChHHHHH-HHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence 345789999999999999999 6663211110 01222221
Q ss_pred --EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810 89 --FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADL 165 (250)
Q Consensus 89 --~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl 165 (250)
.+.+|||+|++.....+. .. ++.+|++++|+|.+++.++... .+++..+ ... ...|+++++||+|+
T Consensus 83 ~~~i~liDtpG~~~~~~~~~-----~~---~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~-~~~--~~~~iivviNK~Dl 151 (425)
T PRK12317 83 KYYFTIVDCPGHRDFVKNMI-----TG---ASQADAAVLVVAADDAGGVMPQTREHVFLA-RTL--GINQLIVAINKMDA 151 (425)
T ss_pred CeEEEEEECCCcccchhhHh-----hc---hhcCCEEEEEEEcccCCCCCcchHHHHHHH-HHc--CCCeEEEEEEcccc
Confidence 678999999753221111 11 1279999999999873222221 1222222 221 22469999999998
Q ss_pred cCCCc----cCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHH
Q psy5810 166 ERRRQ----VTHSDGKKLAYAWG-----VKFVETSVGLVYKTDELL 202 (250)
Q Consensus 166 ~~~~~----v~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~lf 202 (250)
.+... ...++..++++..+ ++++++||++|.|+.+.+
T Consensus 152 ~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 152 VNYDEKRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred ccccHHHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 54111 12244555665555 469999999999998754
No 208
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.54 E-value=6e-14 Score=129.48 Aligned_cols=153 Identities=18% Similarity=0.065 Sum_probs=108.3
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCCC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~a 120 (250)
.+|+++|+||||||||+| ++++...+...-.|.|++ ++.+.|.||.+.-.....-...-..|..--++
T Consensus 4 ~~valvGNPNvGKTtlFN-~LTG~~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~ 82 (653)
T COG0370 4 LTVALVGNPNVGKTTLFN-ALTGANQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKP 82 (653)
T ss_pred ceEEEecCCCccHHHHHH-HHhccCceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCC
Confidence 349999999999999999 899976666666677776 67899999986221111101011111111268
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE 200 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~ 200 (250)
|++|-|.|.+|.+---.+- -++.+ -+.|++++-|+.|+.+.+.+. -+.+++.+.+|+|.+++||++|.|+++
T Consensus 83 D~ivnVvDAtnLeRnLylt---lQLlE----~g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~~LGvPVv~tvA~~g~G~~~ 154 (653)
T COG0370 83 DLIVNVVDATNLERNLYLT---LQLLE----LGIPMILALNMIDEAKKRGIR-IDIEKLSKLLGVPVVPTVAKRGEGLEE 154 (653)
T ss_pred CEEEEEcccchHHHHHHHH---HHHHH----cCCCeEEEeccHhhHHhcCCc-ccHHHHHHHhCCCEEEEEeecCCCHHH
Confidence 9999999999976322221 12222 378899999999986655443 346678889999999999999999999
Q ss_pred HHHHHHHHHHhhh
Q psy5810 201 LLVGIARQAGLNK 213 (250)
Q Consensus 201 lf~~l~~~i~~~~ 213 (250)
+...+.+....+.
T Consensus 155 l~~~i~~~~~~~~ 167 (653)
T COG0370 155 LKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHhccccc
Confidence 9999886554443
No 209
>COG2262 HflX GTPases [General function prediction only]
Probab=99.52 E-value=2.1e-13 Score=119.24 Aligned_cols=151 Identities=20% Similarity=0.094 Sum_probs=104.0
Q ss_pred EEEEEEcCCCCchhhhchhhhccc----cccccccccCceeE--------EEEEeCCCCccccCCCc---cccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQ----VENFVQTYHPDVFF--------IVYSDTNHTQRCLTPMP---FCSQVENFVQ 116 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~----~~~~~~~~~~~~~~--------i~i~Dt~g~~~~~~~~~---~~~~~~~~~~ 116 (250)
..|.++|.+|+|||||+| ++++. .+..-.|.+|+... +.+-||.|--+.+.+.. |++..|+.
T Consensus 193 p~vaLvGYTNAGKSTL~N-~LT~~~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~-- 269 (411)
T COG2262 193 PLVALVGYTNAGKSTLFN-ALTGADVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV-- 269 (411)
T ss_pred CeEEEEeeccccHHHHHH-HHhccCeeccccccccccCceeEEEeCCCceEEEecCccCcccCChHHHHHHHHHHHHh--
Confidence 449999999999999999 88875 34445666777654 44567888655554443 33344443
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
..||+++.|.|.++|.-.+.+..-..-+ +..+..++|+|+|.||+|+..... .........-..+.+||++|.
T Consensus 270 -~~aDlllhVVDaSdp~~~~~~~~v~~vL-~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~ 342 (411)
T COG2262 270 -KEADLLLHVVDASDPEILEKLEAVEDVL-AEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE 342 (411)
T ss_pred -hcCCEEEEEeecCChhHHHHHHHHHHHH-HHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence 3899999999999997666655443333 223556799999999999643211 111222111148999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy5810 197 KTDELLVGIARQAGLN 212 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~ 212 (250)
|++.+.+.|...+...
T Consensus 343 gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 343 GLDLLRERIIELLSGL 358 (411)
T ss_pred CHHHHHHHHHHHhhhc
Confidence 9999999999887744
No 210
>KOG1423|consensus
Probab=99.51 E-value=5.9e-14 Score=118.05 Aligned_cols=168 Identities=17% Similarity=0.106 Sum_probs=100.4
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhccccc-----cccccccCce-------eEEEEEeCCCCc-cccCC--Ccccccc
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVE-----NFVQTYHPDV-------FFIVYSDTNHTQ-RCLTP--MPFCSQV 111 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-----~~~~~~~~~~-------~~i~i~Dt~g~~-~~~~~--~~~~~~~ 111 (250)
...+.+.|+|||.||||||||.| .+++..- ...+|-.... ..+.++||+|.- +.... +.-.+..
T Consensus 68 e~~k~L~vavIG~PNvGKStLtN-~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~l 146 (379)
T KOG1423|consen 68 EAQKSLYVAVIGAPNVGKSTLTN-QMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVL 146 (379)
T ss_pred hcceEEEEEEEcCCCcchhhhhh-HhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhh
Confidence 35677889999999999999999 7777411 1111111111 167789999953 11110 1001111
Q ss_pred -ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC-------------ccC---HH
Q psy5810 112 -ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR-------------QVT---HS 174 (250)
Q Consensus 112 -~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~-------------~v~---~~ 174 (250)
+.+.++-.||++++|+|+++....-. ...+..+.++ ..+|-+||-||.|....+ +++ .+
T Consensus 147 q~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~ 222 (379)
T KOG1423|consen 147 QNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLE 222 (379)
T ss_pred hCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhh
Confidence 11223338999999999996332211 1223333333 678999999999974322 111 11
Q ss_pred HHHHHHH---------HhCC----eEEEEecCCCCCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810 175 DGKKLAY---------AWGV----KFVETSVGLVYKTDELLVGIARQAGLNKKRNKLL 219 (250)
Q Consensus 175 ~~~~~~~---------~~~~----~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~ 219 (250)
..+++.. ..|+ .+|.+||++|+||+++-++|+.++..........
T Consensus 223 v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~ 280 (379)
T KOG1423|consen 223 VQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPAD 280 (379)
T ss_pred HHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcc
Confidence 1111111 1123 2799999999999999999999988776665543
No 211
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.51 E-value=5.2e-14 Score=115.72 Aligned_cols=136 Identities=13% Similarity=0.093 Sum_probs=80.4
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccc-c------------------------------ccCcee-----------EE
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQ-T------------------------------YHPDVF-----------FI 90 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~------------------------------~~~~~~-----------~i 90 (250)
+|+|+|.+|+|||||++ +++........ . .+.++. .+
T Consensus 1 ~i~iiG~~~~GKStL~~-~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIG-RLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHH-HHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence 48999999999999998 66543111110 0 111111 67
Q ss_pred EEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc
Q psy5810 91 VYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 170 (250)
Q Consensus 91 ~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 170 (250)
.+|||+|+...... +.. .++.+|++++|+|.++...-+. ......+ ... ...++|+|.||+|+.+...
T Consensus 80 ~liDTpG~~~~~~~-----~~~---~~~~ad~~llVvD~~~~~~~~~-~~~~~~~-~~~--~~~~iIvviNK~D~~~~~~ 147 (208)
T cd04166 80 IIADTPGHEQYTRN-----MVT---GASTADLAILLVDARKGVLEQT-RRHSYIL-SLL--GIRHVVVAVNKMDLVDYSE 147 (208)
T ss_pred EEEECCcHHHHHHH-----HHH---hhhhCCEEEEEEECCCCccHhH-HHHHHHH-HHc--CCCcEEEEEEchhcccCCH
Confidence 89999997531111 111 1127999999999987532111 1111112 111 2245788999999854211
Q ss_pred c----CHHHHHHHHHHhCC---eEEEEecCCCCCHHHH
Q psy5810 171 V----THSDGKKLAYAWGV---KFVETSVGLVYKTDEL 201 (250)
Q Consensus 171 v----~~~~~~~~~~~~~~---~~~evSa~~~~~I~~l 201 (250)
- ...+..++.+.++. +++++||++|.|+.+.
T Consensus 148 ~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 148 EVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 1 12344455566664 4899999999998753
No 212
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.51 E-value=5.8e-14 Score=126.56 Aligned_cols=144 Identities=17% Similarity=0.163 Sum_probs=91.1
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccc-ccccc---------------------ccc------C------------ceeEE
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQ---------------------TYH------P------------DVFFI 90 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~---------------------~~~------~------------~~~~i 90 (250)
.++|+++|..++|||||+. ++.+.. +.... +.+ . ....+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~-~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTK-ALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred eEEEEEEccCCCCHHHHHH-HHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4679999999999999997 775420 00000 000 0 02367
Q ss_pred EEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH----HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 91 VYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 91 ~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
.+|||+|+++....+ +. . +..+|++++|+|.++. ++.+.+. .+ ... ...|+++++||+|+.
T Consensus 83 ~liDtPGh~~f~~~~-~~----g---~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l-~~~--gi~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHETLMATM-LS----G---AALMDGALLVIAANEPCPQPQTKEHLM----AL-EII--GIKNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHHHHHHH-HH----H---HHHCCEEEEEEECCCCccccchHHHHH----HH-HHc--CCCeEEEEEEccccC
Confidence 899999986432211 11 1 1168999999999964 3333332 22 111 234689999999986
Q ss_pred CCCc--cCHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 167 RRRQ--VTHSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 167 ~~~~--v~~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+... ...++..++.+.. +++++++||++|.|+++++++|...+.
T Consensus 148 ~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 148 SKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence 4221 1123444444433 578999999999999999999987654
No 213
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.50 E-value=1.3e-13 Score=129.56 Aligned_cols=141 Identities=12% Similarity=0.129 Sum_probs=92.3
Q ss_pred EEEEEcCCCCchhhhchhhhccc-ccccccc--ccCcee------------EEEEEeCCCCccccCCCcccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQ-VENFVQT--YHPDVF------------FIVYSDTNHTQRCLTPMPFCSQVENFVQT 117 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~--~~~~~~------------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~ 117 (250)
-|+++|..++|||||++ ++.+. .+.+... .+.|++ .+.+|||||+++.... +... +
T Consensus 2 ii~~~GhvdhGKTtLi~-aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~-----m~~g---~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQ-AITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSN-----MLAG---V 72 (614)
T ss_pred EEEEECCCCCCHHHHHH-HHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHH-----HHHH---h
Confidence 48999999999999998 88753 1222222 233322 4679999998643211 1111 1
Q ss_pred CCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCccC--HHHHHHHHHHhC---CeEE
Q psy5810 118 YHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVT--HSDGKKLAYAWG---VKFV 188 (250)
Q Consensus 118 ~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~--~~~~~~~~~~~~---~~~~ 188 (250)
.++|++++|+|.++ +.+.+.+. ++. . .++| +++|.||+|+.+...+. .++..++....+ .+++
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~-il~----~---lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii 144 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLA-ILQ----L---TGNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLF 144 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHH-HHH----H---cCCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 17999999999987 45555442 222 1 2355 68999999985422221 234455555544 5799
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q psy5810 189 ETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~ 210 (250)
++||++|.|++++++.|.....
T Consensus 145 ~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 145 VTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred EEeCCCCCCCHHHHHHHHHhhc
Confidence 9999999999999999986543
No 214
>KOG0077|consensus
Probab=99.48 E-value=8.3e-14 Score=107.14 Aligned_cols=145 Identities=14% Similarity=0.128 Sum_probs=110.3
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcc-ccccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCS-QVENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~-~~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+.-|++++|..|+|||||++ .+-+ ......+|.+|+-+ +++..|.+|.. +..|..|+- .
T Consensus 19 K~gKllFlGLDNAGKTTLLH-MLKdDrl~qhvPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdyf~----------~ 87 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLH-MLKDDRLGQHVPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDYFP----------Q 87 (193)
T ss_pred cCceEEEEeecCCchhhHHH-HHccccccccCCCcCCChHHheecCceEEEEccccHHHHHHHHHHHHh----------h
Confidence 34569999999999999998 3443 25567889999887 56668999954 777888888 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH------HHHhC---------
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL------AYAWG--------- 184 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~------~~~~~--------- 184 (250)
+|++++.+|..|.+-|.+.+.-++.+.......++|+++.+||+|.+.. .++++.+.. +...+
T Consensus 88 v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~v~~~~~~~ 165 (193)
T KOG0077|consen 88 VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGKVNLTDSNV 165 (193)
T ss_pred hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhcccccccccCCCC
Confidence 9999999999999999998887777766655678999999999998753 344443221 11111
Q ss_pred --CeEEEEecCCCCCHHHHHHHHHH
Q psy5810 185 --VKFVETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 185 --~~~~evSa~~~~~I~~lf~~l~~ 207 (250)
+..+-||...+.+--+.|.|+..
T Consensus 166 rp~evfmcsi~~~~gy~e~fkwl~q 190 (193)
T KOG0077|consen 166 RPLEVFMCSIVRKMGYGEGFKWLSQ 190 (193)
T ss_pred CeEEEEEEEEEccCccceeeeehhh
Confidence 23577888888887788887764
No 215
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.48 E-value=1.7e-13 Score=110.81 Aligned_cols=146 Identities=17% Similarity=0.116 Sum_probs=89.4
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccccccc------------------cccc-------------CceeEEEEEeCCCCc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFV------------------QTYH-------------PDVFFIVYSDTNHTQ 99 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~------------------~~~~-------------~~~~~i~i~Dt~g~~ 99 (250)
.+.|+++|..++|||||+. +++....... ...+ .....+.++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~-~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLG-ALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHH-HHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeech-hhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4569999999999999998 6664311100 0001 111267889999975
Q ss_pred cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc-cCHHHHH-
Q psy5810 100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ-VTHSDGK- 177 (250)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~- 177 (250)
... ..+.. .+..+|++|+|.|..+...... .+.+..+.. .++|++++.||+|+...+. -..++..
T Consensus 82 ~f~-----~~~~~---~~~~~D~ailvVda~~g~~~~~-~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~ 148 (188)
T PF00009_consen 82 DFI-----KEMIR---GLRQADIAILVVDANDGIQPQT-EEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKE 148 (188)
T ss_dssp HHH-----HHHHH---HHTTSSEEEEEEETTTBSTHHH-HHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHH
T ss_pred cee-----ecccc---eecccccceeeeeccccccccc-ccccccccc----cccceEEeeeeccchhhhHHHHHHHHHH
Confidence 311 11111 1227999999999987543322 222333322 4788999999999852110 0011122
Q ss_pred HHHHHh------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 178 KLAYAW------GVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 178 ~~~~~~------~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
.+.+.. .++++++||++|.|+.++++.+.+.++
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 333333 257999999999999999999987653
No 216
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.48 E-value=1.6e-13 Score=102.72 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=81.8
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccccccccc-CceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYH-PDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVI 130 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~-~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~ 130 (250)
+||+++|+.|||||+|+. ++.. ..|...+. ++++ ...+...+++ .++++++||+.+
T Consensus 1 ~kvv~~G~~gvGKt~l~~-~~~~--~~~~~~~~~~t~~----------~~~~~~~~~~----------s~~~~~~v~~~~ 57 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSA-RFVQ--FPFDYVPTVFTIG----------IDVYDPTSYE----------SFDVVLQCWRVD 57 (124)
T ss_pred CEEEEECCCChhHHHHHH-HHhc--CCccccCceehhh----------hhhccccccC----------CCCEEEEEEEcc
Confidence 379999999999999997 7866 44443322 2322 3334456666 899999999999
Q ss_pred CHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810 131 ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD 199 (250)
Q Consensus 131 ~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~ 199 (250)
++++++.+ |...+... ...+.|.++++||.|+.+.+.+..+++ ..|+++|++++.|+.
T Consensus 58 ~~~s~~~~--~~~~i~~~-~k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~~~~~~~~ 115 (124)
T smart00010 58 DRDSADNK--NVPEVLVG-NKSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSAKTPEEGE 115 (124)
T ss_pred CHHHHHHH--hHHHHHhc-CCCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhCCCcchhh
Confidence 99999876 87776543 345788999999999854334444333 345678889999874
No 217
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.48 E-value=1.8e-13 Score=128.23 Aligned_cols=144 Identities=16% Similarity=0.081 Sum_probs=97.3
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccc----------------cccCcee-----------EEEEEeCCCCcc--ccC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQ----------------TYHPDVF-----------FIVYSDTNHTQR--CLT 103 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----------------~~~~~~~-----------~i~i~Dt~g~~~--~~~ 103 (250)
.|+|+|..++|||||+. +++...+.+.. ..+.++. ++.+|||||... ...
T Consensus 3 NIaIiGHvd~GKTTLv~-~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~ev 81 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVD-ALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGEV 81 (594)
T ss_pred EEEEEcCCCCCHHHHHH-HHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHHH
Confidence 39999999999999998 77653222211 1223332 678999999853 222
Q ss_pred CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc-CHHHHHHHHH-
Q psy5810 104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV-THSDGKKLAY- 181 (250)
Q Consensus 104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~- 181 (250)
..++. .+|++++|+|.++.. ......|+..+.. .++|+++++||+|+.+.+.. ..++...+..
T Consensus 82 ~~~l~----------~aD~alLVVDa~~G~-~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~ 146 (594)
T TIGR01394 82 ERVLG----------MVDGVLLLVDASEGP-MPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFAE 146 (594)
T ss_pred HHHHH----------hCCEEEEEEeCCCCC-cHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHHh
Confidence 33344 799999999998742 3344566666644 46899999999998653321 1233333332
Q ss_pred ------HhCCeEEEEecCCCC----------CHHHHHHHHHHHHHhh
Q psy5810 182 ------AWGVKFVETSVGLVY----------KTDELLVGIARQAGLN 212 (250)
Q Consensus 182 ------~~~~~~~evSa~~~~----------~I~~lf~~l~~~i~~~ 212 (250)
...++++++||++|. |+..+|+.++..+...
T Consensus 147 ~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 147 LGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred hccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 235789999999996 7999999999877644
No 218
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.47 E-value=6.2e-13 Score=108.45 Aligned_cols=148 Identities=13% Similarity=0.046 Sum_probs=86.9
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccc--cc---c----cccC------ceeEEEEEeCCCCccccC--CCccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVEN--FV---Q----TYHP------DVFFIVYSDTNHTQRCLT--PMPFCSQVENF 114 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~--~~---~----~~~~------~~~~i~i~Dt~g~~~~~~--~~~~~~~~~~~ 114 (250)
+||+++|++|||||||+| .+.+.... .. . +... ....+.+|||+|...... ..|.. .
T Consensus 2 ~kI~i~G~~g~GKSSLin-~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~-----~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFIN-ALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLE-----E 75 (197)
T ss_pred eEEEEECCCCCCHHHHHH-HHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHH-----H
Confidence 679999999999999998 77763110 00 0 1000 012578999999742111 11111 1
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC-Cc---c---CHHH----HHHHHH-
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR-RQ---V---THSD----GKKLAY- 181 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~-~~---v---~~~~----~~~~~~- 181 (250)
..+.++|++++|.|- +|.... .|++.+.+. ..|+++|+||+|+... .. . ..++ ..+.+.
T Consensus 76 ~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~ 147 (197)
T cd04104 76 MKFSEYDFFIIISST----RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLE 147 (197)
T ss_pred hCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHH
Confidence 112278998888432 233333 455555432 5799999999998321 10 0 1111 111221
Q ss_pred ---HhC--C-eEEEEecC--CCCCHHHHHHHHHHHHHhhh
Q psy5810 182 ---AWG--V-KFVETSVG--LVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 182 ---~~~--~-~~~evSa~--~~~~I~~lf~~l~~~i~~~~ 213 (250)
..+ . +++.+|+. .+.++..+.+.++..+.+.+
T Consensus 148 ~~~~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 148 NLQEAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred HHHHcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 212 2 48999998 57899999999998887643
No 219
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.46 E-value=3.6e-13 Score=121.51 Aligned_cols=145 Identities=14% Similarity=0.142 Sum_probs=91.4
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccc-ccccc------ccccC---------------------c------------eeE
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFV------QTYHP---------------------D------------VFF 89 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~------~~~~~---------------------~------------~~~ 89 (250)
..++|+++|..++|||||+. ++.+. .+... .|+.. . ...
T Consensus 8 ~~~ni~v~Gh~d~GKSTL~~-~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 8 PEVNIGMVGHVDHGKTTLVQ-ALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred CcEEEEEEccCCCCHHHHHH-HhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 44779999999999999996 67442 00000 00000 0 136
Q ss_pred EEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH----HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810 90 IVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----KTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 165 (250)
Q Consensus 90 i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 165 (250)
+.+|||+|++.... .++. .+..+|++++|+|++++ ++.+.+..| . .. ...|+++|+||+|+
T Consensus 87 i~liDtPG~~~f~~-~~~~-------~~~~~D~~llVVDa~~~~~~~~t~~~l~~l-~---~~---~i~~iiVVlNK~Dl 151 (411)
T PRK04000 87 VSFVDAPGHETLMA-TMLS-------GAALMDGAILVIAANEPCPQPQTKEHLMAL-D---II---GIKNIVIVQNKIDL 151 (411)
T ss_pred EEEEECCCHHHHHH-HHHH-------HHhhCCEEEEEEECCCCCCChhHHHHHHHH-H---Hc---CCCcEEEEEEeecc
Confidence 78999999864321 2222 11257999999999953 344433321 1 11 22468999999998
Q ss_pred cCCCcc--CHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 166 ERRRQV--THSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 166 ~~~~~v--~~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
.+.... ..++...+++.. +.+++++||++|.|++++++.|...+.
T Consensus 152 ~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~ 201 (411)
T PRK04000 152 VSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP 201 (411)
T ss_pred ccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence 543221 123444444432 478999999999999999999987664
No 220
>KOG1489|consensus
Probab=99.45 E-value=1e-12 Score=111.25 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=100.7
Q ss_pred EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCc------cccCCCcccccccccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQ------RCLTPMPFCSQVENFV 115 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~------~~~~~~~~~~~~~~~~ 115 (250)
|.+||-||+|||||++ .+...... .-+|..|.++ .+.+-|.||.- +.+...|++ ++|
T Consensus 199 vGLVG~PNAGKSTLL~-als~AKpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLr-HiE--- 273 (366)
T KOG1489|consen 199 VGLVGFPNAGKSTLLN-ALSRAKPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLR-HIE--- 273 (366)
T ss_pred cceecCCCCcHHHHHH-HhhccCCcccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHH-HHH---
Confidence 8999999999999998 88776332 2244445444 45677888853 344444443 333
Q ss_pred ccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhh-hCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEE
Q psy5810 116 QTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDS-KYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVET 190 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~ev 190 (250)
.++.+++|.|++.+ .-++.++....++..+ ....+.|.++|+||+|+++.. ..-..++++...-+ ++++
T Consensus 274 ---R~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pv 347 (366)
T KOG1489|consen 274 ---RCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPV 347 (366)
T ss_pred ---hhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEe
Confidence 48999999999998 7777777766666554 234678999999999985311 11135566665544 9999
Q ss_pred ecCCCCCHHHHHHHHHH
Q psy5810 191 SVGLVYKTDELLVGIAR 207 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~ 207 (250)
||+.++++.++++-|-+
T Consensus 348 sA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 348 SAKSGEGLEELLNGLRE 364 (366)
T ss_pred eeccccchHHHHHHHhh
Confidence 99999999998877643
No 221
>PRK10218 GTP-binding protein; Provisional
Probab=99.44 E-value=6.7e-13 Score=124.37 Aligned_cols=145 Identities=14% Similarity=0.039 Sum_probs=94.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccc----------------cccCcee-----------EEEEEeCCCCcc--cc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----------------TYHPDVF-----------FIVYSDTNHTQR--CL 102 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----------------~~~~~~~-----------~i~i~Dt~g~~~--~~ 102 (250)
-+|+|+|..++|||||++ +|+.....+.. +.+.++. .+.+|||+|+.. ..
T Consensus 6 RnIaIiGh~d~GKTTLv~-~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~~~ 84 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVD-KLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGE 84 (607)
T ss_pred eEEEEECCCCCcHHHHHH-HHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhHHH
Confidence 359999999999999998 77753222221 2222322 677999999853 33
Q ss_pred CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc-CHHHHHHHHH
Q psy5810 103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV-THSDGKKLAY 181 (250)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~ 181 (250)
+..+++ .+|++|+|+|.++....+. ..++..+.. .++|.+++.||+|+.+.+.- ..++...+..
T Consensus 85 v~~~l~----------~aDg~ILVVDa~~G~~~qt-~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~ 149 (607)
T PRK10218 85 VERVMS----------MVDSVLLVVDAFDGPMPQT-RFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFV 149 (607)
T ss_pred HHHHHH----------hCCEEEEEEecccCccHHH-HHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHh
Confidence 344445 8999999999987543322 333333322 47889999999998643211 1123333321
Q ss_pred -------HhCCeEEEEecCCCC----------CHHHHHHHHHHHHHhh
Q psy5810 182 -------AWGVKFVETSVGLVY----------KTDELLVGIARQAGLN 212 (250)
Q Consensus 182 -------~~~~~~~evSa~~~~----------~I~~lf~~l~~~i~~~ 212 (250)
...++++.+||++|. ++..+++.++..+...
T Consensus 150 ~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 150 NLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred ccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 134779999999998 5888888877776543
No 222
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.44 E-value=7.8e-13 Score=105.84 Aligned_cols=150 Identities=15% Similarity=0.052 Sum_probs=96.4
Q ss_pred EEEEcCCCCchhhhchhhhcccc--ccccccccCcee--------EEEEEeCCCC-ccc---cCCCccccccccccccC-
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF--------FIVYSDTNHT-QRC---LTPMPFCSQVENFVQTY- 118 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~--------~i~i~Dt~g~-~~~---~~~~~~~~~~~~~~~~~- 118 (250)
|+++|.+||||||||| .+++.. .....+.|.|.. .+.+.|.||- +-. -...-...++++|.+.+
T Consensus 27 IaF~GRSNVGKSSlIN-~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~R~ 105 (200)
T COG0218 27 IAFAGRSNVGKSSLIN-ALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRA 105 (200)
T ss_pred EEEEccCcccHHHHHH-HHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhhch
Confidence 9999999999999999 898853 456667777654 3678899983 100 00111223444444443
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh----CCe--EEEEec
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW----GVK--FVETSV 192 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~----~~~--~~evSa 192 (250)
+-.+++++.|+..+..-.+. ++++.+.+ .++|+++|+||+|........ ......++.. ... ++..|+
T Consensus 106 ~L~~vvlliD~r~~~~~~D~-em~~~l~~----~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~~~~~~~~~ss 179 (200)
T COG0218 106 NLKGVVLLIDARHPPKDLDR-EMIEFLLE----LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPPDDQWVVLFSS 179 (200)
T ss_pred hheEEEEEEECCCCCcHHHH-HHHHHHHH----cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCCccceEEEEec
Confidence 56788999999886544332 23333322 489999999999964422211 1112223222 222 788999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy5810 193 GLVYKTDELLVGIARQAG 210 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~ 210 (250)
.++.|++++...|...+.
T Consensus 180 ~~k~Gi~~l~~~i~~~~~ 197 (200)
T COG0218 180 LKKKGIDELKAKILEWLK 197 (200)
T ss_pred ccccCHHHHHHHHHHHhh
Confidence 999999999988887654
No 223
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.43 E-value=4.8e-13 Score=110.38 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=65.5
Q ss_pred EEEEEcCCCCchhhhchhhhcccccc-------------ccc------cccCc----------------eeEEEEEeCCC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVEN-------------FVQ------TYHPD----------------VFFIVYSDTNH 97 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~-------------~~~------~~~~~----------------~~~i~i~Dt~g 97 (250)
+|+|+|..|+|||||+. +++..... +.+ ..+.+ ...+.+|||+|
T Consensus 2 nv~iiG~~~~GKTtL~~-~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 2 NVAIAGHLHHGKTSLLD-MLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred cEEEEcCCCCCHHHHHH-HHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 38999999999999998 67652110 000 01111 12578999999
Q ss_pred Cccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 98 TQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 98 ~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
+... ....++. .+|++++|+|.++..++.. ..|+..... .+.|+++|+||+|+.
T Consensus 81 ~~~f~~~~~~~~~----------~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNFMDEVAAALR----------LSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL 136 (213)
T ss_pred CcchHHHHHHHHH----------hCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence 8632 2233344 7999999999998776643 345554432 358999999999973
No 224
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.40 E-value=3e-12 Score=109.56 Aligned_cols=152 Identities=22% Similarity=0.114 Sum_probs=101.4
Q ss_pred EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCc------cccCCCcccccccccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQ------RCLTPMPFCSQVENFV 115 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~------~~~~~~~~~~~~~~~~ 115 (250)
|.++|-||+||||||+ .+...... .-+|..|..+ .+.+-|.||-- ..+...|++ ++|+
T Consensus 162 VGLVG~PNaGKSTlls-~vS~AkPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLr-HIER-- 237 (369)
T COG0536 162 VGLVGLPNAGKSTLLS-AVSAAKPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLR-HIER-- 237 (369)
T ss_pred cccccCCCCcHHHHHH-HHhhcCCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHH-HHHh--
Confidence 8899999999999997 77776332 2245555555 35567888742 344444444 4444
Q ss_pred ccCCCcEEEEEEeCCCHHh---HHHHHHHHHHHHhh-hCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEE
Q psy5810 116 QTYHPDVFVIVYSVIERKT---FKKAEDMLKTLWDS-KYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVET 190 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~S---f~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~ev 190 (250)
+.++++|.|++..+- .++......++.++ ....+.|.+||+||+|+....+-.......+.+..++. .+.+
T Consensus 238 ----t~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~I 313 (369)
T COG0536 238 ----TRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLI 313 (369)
T ss_pred ----hheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceee
Confidence 889999999986542 45555555666555 23457899999999996432222222233344444554 2229
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 191 SVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
||.++.|++++...+.+.+.+..
T Consensus 314 Sa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 314 SALTREGLDELLRALAELLEETK 336 (369)
T ss_pred ehhcccCHHHHHHHHHHHHHHhh
Confidence 99999999999999998877665
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.39 E-value=5.7e-12 Score=104.72 Aligned_cols=107 Identities=19% Similarity=0.116 Sum_probs=63.2
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
.+.+.||||.++...... .... .+.+|++++|.|.++...-. ...++..+.. .++|+++|.||+|+.+.
T Consensus 85 ~i~liDtpG~~~~~~~~~-----~~~~-~~~~D~~llVvda~~g~~~~-d~~~l~~l~~----~~ip~ivvvNK~D~~~~ 153 (224)
T cd04165 85 LVTFIDLAGHERYLKTTL-----FGLT-GYAPDYAMLVVAANAGIIGM-TKEHLGLALA----LNIPVFVVVTKIDLAPA 153 (224)
T ss_pred EEEEEECCCcHHHHHHHH-----Hhhc-ccCCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCEEEEEECccccCH
Confidence 467889999763221110 0000 01589999999987754322 2333443322 46899999999997432
Q ss_pred Ccc--CHHHHHHHHH--------------------------HhCCeEEEEecCCCCCHHHHHHHHH
Q psy5810 169 RQV--THSDGKKLAY--------------------------AWGVKFVETSVGLVYKTDELLVGIA 206 (250)
Q Consensus 169 ~~v--~~~~~~~~~~--------------------------~~~~~~~evSa~~~~~I~~lf~~l~ 206 (250)
..+ ..++..++.+ ....|++.+||.+|.|++++...|.
T Consensus 154 ~~~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 154 NILQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 211 1112222221 1123799999999999999887764
No 226
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.39 E-value=3.3e-12 Score=107.03 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=64.7
Q ss_pred EEEEcCCCCchhhhchhhhcccccc------------ccc------cccCce-----------eEEEEEeCCCCcc--cc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN------------FVQ------TYHPDV-----------FFIVYSDTNHTQR--CL 102 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~------------~~~------~~~~~~-----------~~i~i~Dt~g~~~--~~ 102 (250)
|+++|..|+|||||++ +++..... +.+ ..+.++ .++.+|||+|+.. ..
T Consensus 2 i~i~G~~~~GKTtL~~-~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 2 IGILAHVDAGKTTLTE-SLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred EEEEcCCCCCHHHHHH-HHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 8999999999999998 66542110 000 111111 1678999999852 22
Q ss_pred CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
+..+++ .+|++++|+|.++.... ....|+..+.+ .++|+++++||+|+.
T Consensus 81 ~~~~l~----------~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~ 129 (237)
T cd04168 81 VERSLS----------VLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRA 129 (237)
T ss_pred HHHHHH----------HhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECcccc
Confidence 233344 79999999999986543 33445554433 478999999999985
No 227
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.38 E-value=2.8e-12 Score=107.99 Aligned_cols=116 Identities=19% Similarity=0.144 Sum_probs=84.8
Q ss_pred cccCCCccccccccccccCCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH
Q psy5810 100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178 (250)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~ 178 (250)
..+.+.++. ++|++++|||++++. ||+.+..|+..+.. .++|+++|+||+||.+.+.+..+++..
T Consensus 27 ~~L~r~~~~----------n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~ 92 (245)
T TIGR00157 27 NELTRPIVA----------NIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDI 92 (245)
T ss_pred ceEECcccc----------cCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHH
Confidence 445555666 999999999999887 99999999986632 679999999999996655555455555
Q ss_pred HHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810 179 LAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF 236 (250)
Q Consensus 179 ~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (250)
+. ..+++++++||++|.|++++|..+...+.-- ...+....++.++.+.++
T Consensus 93 ~~-~~g~~v~~~SAktg~gi~eLf~~l~~~~~~~------~G~sgvGKStLiN~L~~~ 143 (245)
T TIGR00157 93 YR-NIGYQVLMTSSKNQDGLKELIEALQNRISVF------AGQSGVGKSSLINALDPS 143 (245)
T ss_pred HH-HCCCeEEEEecCCchhHHHHHhhhcCCEEEE------ECCCCCCHHHHHHHHhhh
Confidence 54 5788999999999999999999887532211 111223445666666554
No 228
>KOG1532|consensus
Probab=99.38 E-value=1.3e-11 Score=102.70 Aligned_cols=139 Identities=17% Similarity=0.072 Sum_probs=81.5
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 165 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 165 (250)
+..+.|||||-..++..-....+-+..+.....++++|.|..+ +.+|-.=.-+.-.| .+....|+|++.||+|+
T Consensus 117 ~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi---lyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI---LYKTKLPFIVVFNKTDV 193 (366)
T ss_pred CEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH---HHhccCCeEEEEecccc
Confidence 3568999999755444433333333333235678888888644 55664322222222 23368999999999998
Q ss_pred cCCCccCHHH------HHHHHH-------------------H--hCCeEEEEecCCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810 166 ERRRQVTHSD------GKKLAY-------------------A--WGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKL 218 (250)
Q Consensus 166 ~~~~~v~~~~------~~~~~~-------------------~--~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~ 218 (250)
.... .-.+. .++-.+ + .++..+-+|+.+|.|.+++|..+...+.+.......
T Consensus 194 ~d~~-fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy~~~ykp 272 (366)
T KOG1532|consen 194 SDSE-FALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEYEEEYKP 272 (366)
T ss_pred cccH-HHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 5421 11111 110011 0 135689999999999999999999887776555555
Q ss_pred HHHHhhhhhhhhh
Q psy5810 219 LAKKQKKMASYIN 231 (250)
Q Consensus 219 ~~~~~~~~~~~~~ 231 (250)
...+.+..++...
T Consensus 273 ~~Ek~k~~k~~~e 285 (366)
T KOG1532|consen 273 EYEKKKAEKRLAE 285 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 4444333333333
No 229
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.36 E-value=5.7e-12 Score=104.73 Aligned_cols=154 Identities=16% Similarity=0.113 Sum_probs=89.7
Q ss_pred EEEEEcCCCCchhhhchhhhccc----cccccccccCcee--------EEEEEeCCCCccccCCCccccccccccccCCC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQ----VENFVQTYHPDVF--------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~----~~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~a 120 (250)
||+++|.+++||||+.+.-|.+. +....+|...+.. .+.+||.+||...... ++....+...+ ++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~-~~~~~~~~if~--~v 77 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMEN-YFNSQREEIFS--NV 77 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHT-THTCCHHHHHC--TE
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccc-cccccHHHHHh--cc
Confidence 79999999999999985223221 1112233322222 6789999999743322 21212222111 89
Q ss_pred cEEEEEEeCCCHH---hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC--CCccC----HHHHHHHHHHhC---CeEE
Q psy5810 121 DVFVIVYSVIERK---TFKKAEDMLKTLWDSKYIGEKAVILVANKADLER--RRQVT----HSDGKKLAYAWG---VKFV 188 (250)
Q Consensus 121 d~iilV~D~~~~~---Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~v~----~~~~~~~~~~~~---~~~~ 188 (250)
.++|+|+|+.+.+ .+..+...+..+.+. .+++.+-+..+|.|+.. .+... .+...+.+...+ +.++
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~--sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~ 155 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQY--SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFF 155 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHH--STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHh--CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEE
Confidence 9999999998443 444455566666554 47888999999999732 12111 122333444555 6677
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
.+|.-+ ..+.+.|..++..+...
T Consensus 156 ~TSI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 156 LTSIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp EE-TTS-THHHHHHHHHHHTTSTT
T ss_pred eccCcC-cHHHHHHHHHHHHHccc
Confidence 777666 69999999999887643
No 230
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.34 E-value=5.2e-12 Score=109.95 Aligned_cols=56 Identities=21% Similarity=0.203 Sum_probs=39.4
Q ss_pred CCcEEEEeeCCCccCCCccCHHHHHHHHHHh-CCeEEEEecCCCCCHHHHHH-HHHHHHHhh
Q psy5810 153 EKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETSVGLVYKTDELLV-GIARQAGLN 212 (250)
Q Consensus 153 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~evSa~~~~~I~~lf~-~l~~~i~~~ 212 (250)
..|+|+|+||.|+...... ...+.... ...++.+||+.+.++.++.+ .++..+...
T Consensus 214 ~KPvI~VlNK~Dl~~~~~~----~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 214 SKPMVIAANKADIPDAENN----ISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred CCcEEEEEEHHHccChHHH----HHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 4799999999997432111 11222233 45699999999999999998 588877553
No 231
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.34 E-value=2.5e-12 Score=106.62 Aligned_cols=99 Identities=18% Similarity=0.115 Sum_probs=57.5
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH-------hHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK-------TFKKAEDMLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~-------Sf~~~~~~~~~i~~~~~~~~~piilv~n 161 (250)
.+.+|||+|..... ...+ . .+..+|++|+|+|.++.. ..+....|. .. .. ....|+++++|
T Consensus 78 ~i~liDtpG~~~~~-~~~~----~---~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~-~~--~~~~~iiivvN 145 (219)
T cd01883 78 RFTILDAPGHRDFV-PNMI----T---GASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LA-RT--LGVKQLIVAVN 145 (219)
T ss_pred EEEEEECCChHHHH-HHHH----H---HhhhCCEEEEEEECCCCccccccccccchHHHHH-HH-HH--cCCCeEEEEEE
Confidence 67889999975221 1111 1 112699999999999842 111222222 12 11 12368999999
Q ss_pred CCCccCC--CccC----HHHHHHHHHHhC-----CeEEEEecCCCCCHH
Q psy5810 162 KADLERR--RQVT----HSDGKKLAYAWG-----VKFVETSVGLVYKTD 199 (250)
Q Consensus 162 K~Dl~~~--~~v~----~~~~~~~~~~~~-----~~~~evSa~~~~~I~ 199 (250)
|+|+... ..-. .++...+.+..+ ++++++||++|.||.
T Consensus 146 K~Dl~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 146 KMDDVTVNWSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 9998631 1000 112222334443 569999999999986
No 232
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=1.1e-11 Score=105.66 Aligned_cols=151 Identities=15% Similarity=0.135 Sum_probs=97.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccccc----ccccCce-------eEEEEEeCCCCc-cccCCCcccccccc--cccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDV-------FFIVYSDTNHTQ-RCLTPMPFCSQVEN--FVQT 117 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~-------~~i~i~Dt~g~~-~~~~~~~~~~~~~~--~~~~ 117 (250)
..|+|.|.||||||||++ .+........ +|-+..+ ..+|+.||||-- +.+..+. .+|. ..++
T Consensus 169 pTivVaG~PNVGKSSlv~-~lT~AkpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN---~IE~qAi~AL 244 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVR-KLTTAKPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN---EIERQAILAL 244 (346)
T ss_pred CeEEEecCCCCcHHHHHH-HHhcCCCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc---HHHHHHHHHH
Confidence 349999999999999996 7877533322 1222222 288999999964 3332221 1121 1111
Q ss_pred C-CCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecC
Q psy5810 118 Y-HPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVG 193 (250)
Q Consensus 118 ~-~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~ 193 (250)
+ =+++++|++|.+... +.+.-...+.++.... +.|+++|.||.|+.....+ +++......-+.. ...+++.
T Consensus 245 ~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~--~~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 245 RHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKL--EEIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred HHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHH--HHHHHHHHhhccccccceeee
Confidence 1 368899999998754 5666666777776553 4899999999998643333 3333334444444 7788889
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy5810 194 LVYKTDELLVGIARQAGL 211 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~ 211 (250)
.+.+++.+-..+...+.+
T Consensus 320 ~~~~~d~~~~~v~~~a~~ 337 (346)
T COG1084 320 KGCGLDKLREEVRKTALE 337 (346)
T ss_pred ehhhHHHHHHHHHHHhhc
Confidence 888888877777665443
No 233
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.30 E-value=2.9e-11 Score=98.45 Aligned_cols=134 Identities=13% Similarity=0.128 Sum_probs=80.2
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccc-----c---c--------cccccCce-----------eEEEEEeCCCCccccC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-----N---F--------VQTYHPDV-----------FFIVYSDTNHTQRCLT 103 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-----~---~--------~~~~~~~~-----------~~i~i~Dt~g~~~~~~ 103 (250)
++.|+++|..++|||||++ +++.... . + ...-+.++ ..+.+.||||....+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~-~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~- 79 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTA-AITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYI- 79 (195)
T ss_pred cEEEEEECCCCCCHHHHHH-HHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHH-
Confidence 3679999999999999998 6654200 0 0 00111111 156789999975211
Q ss_pred CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCcc---CHHHHHHH
Q psy5810 104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQV---THSDGKKL 179 (250)
Q Consensus 104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~~~~ 179 (250)
. +....+..+|++++|+|.+....-+ ....+..+.+ .++| +|++.||+|+...... ..++...+
T Consensus 80 ----~---~~~~~~~~~D~~ilVvda~~g~~~~-~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~ 147 (195)
T cd01884 80 ----K---NMITGAAQMDGAILVVSATDGPMPQ-TREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVREL 147 (195)
T ss_pred ----H---HHHHHhhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHHH
Confidence 1 1111223799999999998743222 2223333322 3566 7889999998432211 12344555
Q ss_pred HHHhC-----CeEEEEecCCCCCH
Q psy5810 180 AYAWG-----VKFVETSVGLVYKT 198 (250)
Q Consensus 180 ~~~~~-----~~~~evSa~~~~~I 198 (250)
....+ ++++++||++|.|+
T Consensus 148 l~~~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 148 LSKYGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred HHHhcccccCCeEEEeeCccccCC
Confidence 55444 57999999999985
No 234
>PRK09866 hypothetical protein; Provisional
Probab=99.29 E-value=6.1e-11 Score=109.67 Aligned_cols=137 Identities=13% Similarity=0.113 Sum_probs=80.0
Q ss_pred EEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc
Q psy5810 91 VYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ 170 (250)
Q Consensus 91 ~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~ 170 (250)
.+.||||-........-..+.+ ++.++|++++|.|.++..+..+ ...++.+.+. ....|+++|.||+|+.+...
T Consensus 233 IFVDTPGIhk~~~~~L~k~M~e---qL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~--~K~~PVILVVNKIDl~dree 306 (741)
T PRK09866 233 TLLDTPGPNEAGQPHLQKMLNQ---QLARASAVLAVLDYTQLKSISD-EEVREAILAV--GQSVPLYVLVNKFDQQDRNS 306 (741)
T ss_pred EEEECCCCCCccchHHHHHHHH---HHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc--CCCCCEEEEEEcccCCCccc
Confidence 3568888653211111111112 2448999999999988544433 1233333322 11369999999999853222
Q ss_pred cCHHHHHHHHHHh----CC---eEEEEecCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCCc
Q psy5810 171 VTHSDGKKLAYAW----GV---KFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKWF 239 (250)
Q Consensus 171 v~~~~~~~~~~~~----~~---~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (250)
-..+....+.... ++ .++++||++|.|+++++..+...=.-. .....+-+.++....+|+.|+
T Consensus 307 ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~l~------~~~~~~wv~dfa~~~~gr~w~ 376 (741)
T PRK09866 307 DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGKLP------PPEQQRWVEDFAHAALGRRWR 376 (741)
T ss_pred chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCCCC------chhhhHHHHHHHHHHhccccc
Confidence 2345555554322 22 489999999999999998887521101 111123466777788888774
No 235
>KOG1191|consensus
Probab=99.29 E-value=6.5e-12 Score=111.82 Aligned_cols=163 Identities=17% Similarity=0.086 Sum_probs=100.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccccc-ccccCcee-----------EEEEEeCCCCcc-ccCCCccccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDVF-----------FIVYSDTNHTQR-CLTPMPFCSQVENFVQ 116 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~~-----------~i~i~Dt~g~~~-~~~~~~~~~~~~~~~~ 116 (250)
..++|+|+|.||||||||+| .+.+..-... +..|.|.+ ++.+.||+|--+ .--...-........+
T Consensus 267 ~gl~iaIvGrPNvGKSSLlN-aL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~ 345 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLN-ALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKR 345 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHH-HHhcCCceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhHHHhHHHHHHH
Confidence 34669999999999999999 8887633322 22333322 788999999643 1111111122233344
Q ss_pred cCCCcEEEEEEeC--CCHHhHHHHHHHHHHHHhh-----hCCCCCcEEEEeeCCCccCC-CccCHHHHHHHHHHhC---C
Q psy5810 117 TYHPDVFVIVYSV--IERKTFKKAEDMLKTLWDS-----KYIGEKAVILVANKADLERR-RQVTHSDGKKLAYAWG---V 185 (250)
Q Consensus 117 ~~~ad~iilV~D~--~~~~Sf~~~~~~~~~i~~~-----~~~~~~piilv~nK~Dl~~~-~~v~~~~~~~~~~~~~---~ 185 (250)
+..||++++|+|. ++-++-..+.+.+...... +.....|++++.||.|+... .+... ....+....+ .
T Consensus 346 ~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~~~~ 424 (531)
T KOG1191|consen 346 IERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEGRSVF 424 (531)
T ss_pred HhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-CceeccccccCccc
Confidence 5589999999999 5544444444444444221 11234789999999998542 11111 0111222222 3
Q ss_pred e-EEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 186 K-FVETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 186 ~-~~evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
+ ..++|+++++++..+.+.+.+.+.....
T Consensus 425 ~i~~~vs~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 425 PIVVEVSCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred ceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence 3 5679999999999999999988776544
No 236
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.29 E-value=1e-10 Score=99.56 Aligned_cols=149 Identities=17% Similarity=0.027 Sum_probs=95.8
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCCCc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPD 121 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad 121 (250)
.+++||.|+||||||++ .+.+......+....|.+ .+|+.|+||-.......--+ ..+..-.+|+||
T Consensus 65 ~v~lVGfPsvGKStLL~-~LTnt~seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr-G~~vlsv~R~AD 142 (365)
T COG1163 65 TVALVGFPSVGKSTLLN-KLTNTKSEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR-GRQVLSVARNAD 142 (365)
T ss_pred EEEEEcCCCccHHHHHH-HHhCCCccccccCceecccccceEeecCceEEEEcCcccccCcccCCCC-cceeeeeeccCC
Confidence 39999999999999998 888864433322222221 79999999864221111100 111111234899
Q ss_pred EEEEEEeCCCHHh-HHHHHHHHHHHH----------------------------------------hhhC----------
Q psy5810 122 VFVIVYSVIERKT-FKKAEDMLKTLW----------------------------------------DSKY---------- 150 (250)
Q Consensus 122 ~iilV~D~~~~~S-f~~~~~~~~~i~----------------------------------------~~~~---------- 150 (250)
++++|.|+..+.+ .+-+...+.... ....
T Consensus 143 lIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~ 222 (365)
T COG1163 143 LIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLIRE 222 (365)
T ss_pred EEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEEec
Confidence 9999999987654 333332222211 0000
Q ss_pred --------------CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 151 --------------IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 151 --------------~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
-..+|.+.|.||.|+.. .++...+.+.. .++.+||..+.|++++.+.+.+.+-
T Consensus 223 dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 223 DVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 01379999999999753 45555555544 6999999999999999999998764
No 237
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.27 E-value=3.9e-11 Score=107.88 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=82.6
Q ss_pred cccccEEEEEEEcCCCCchhhhchhhhccc-----ccccc-----------ccccCce-----------eEEEEEeCCCC
Q psy5810 46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQ-----VENFV-----------QTYHPDV-----------FFIVYSDTNHT 98 (250)
Q Consensus 46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~-----~~~~~-----------~~~~~~~-----------~~i~i~Dt~g~ 98 (250)
......++|+++|..++|||||++ +|++. ...+. ..-|.|+ ..+.+|||||+
T Consensus 7 ~~~~~~~~i~i~Ghvd~GKStL~~-~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh 85 (394)
T TIGR00485 7 ERTKPHVNIGTIGHVDHGKTTLTA-AITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGH 85 (394)
T ss_pred cCCCceEEEEEEeecCCCHHHHHH-HHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCch
Confidence 345567889999999999999998 77531 00000 0111121 15789999998
Q ss_pred ccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcE-EEEeeCCCccCCCccC---HH
Q psy5810 99 QRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVT---HS 174 (250)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~v~---~~ 174 (250)
++.+..+ +. .+..+|++++|+|+++...-+. .+.+..+.. .++|. |++.||+|+.+..... .+
T Consensus 86 ~~f~~~~-~~-------~~~~~D~~ilVvda~~g~~~qt-~e~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~ 152 (394)
T TIGR00485 86 ADYVKNM-IT-------GAAQMDGAILVVSATDGPMPQT-REHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEM 152 (394)
T ss_pred HHHHHHH-HH-------HHhhCCEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHH
Confidence 7432111 11 1126899999999987322221 122222322 35675 5689999985422211 23
Q ss_pred HHHHHHHHhC-----CeEEEEecCCCC
Q psy5810 175 DGKKLAYAWG-----VKFVETSVGLVY 196 (250)
Q Consensus 175 ~~~~~~~~~~-----~~~~evSa~~~~ 196 (250)
+..++++.++ ++++++||++|.
T Consensus 153 ~i~~~l~~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 153 EVRELLSEYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred HHHHHHHhcCCCccCccEEECcccccc
Confidence 4666666665 679999999875
No 238
>PRK12736 elongation factor Tu; Reviewed
Probab=99.27 E-value=4.2e-11 Score=107.64 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=89.8
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhccccc-----ccc-----------ccccCce-----------eEEEEEeCCCCc
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVE-----NFV-----------QTYHPDV-----------FFIVYSDTNHTQ 99 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-----~~~-----------~~~~~~~-----------~~i~i~Dt~g~~ 99 (250)
.....++|+++|..++|||||++ ++++... .+. ..-+.++ ..+.++||||.+
T Consensus 8 ~~k~~~ni~i~Ghvd~GKSTL~~-~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~ 86 (394)
T PRK12736 8 RSKPHVNIGTIGHVDHGKTTLTA-AITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA 86 (394)
T ss_pred cCCCeeEEEEEccCCCcHHHHHH-HHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH
Confidence 34566889999999999999998 7765210 000 0112221 156789999975
Q ss_pred cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCccC---HHH
Q psy5810 100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVT---HSD 175 (250)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~~~ 175 (250)
+.+..+ .. .+..+|++++|+|.++...-.. .+.+..+.. .++| +|++.||+|+.+...+. .++
T Consensus 87 ~f~~~~-----~~---~~~~~d~~llVvd~~~g~~~~t-~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~ 153 (394)
T PRK12736 87 DYVKNM-----IT---GAAQMDGAILVVAATDGPMPQT-REHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEME 153 (394)
T ss_pred HHHHHH-----HH---HHhhCCEEEEEEECCCCCchhH-HHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHH
Confidence 322111 11 1126899999999987422111 222222322 3677 67899999985322221 234
Q ss_pred HHHHHHHhC-----CeEEEEecCCCC--------CHHHHHHHHHHHHH
Q psy5810 176 GKKLAYAWG-----VKFVETSVGLVY--------KTDELLVGIARQAG 210 (250)
Q Consensus 176 ~~~~~~~~~-----~~~~evSa~~~~--------~I~~lf~~l~~~i~ 210 (250)
...+.+..+ ++++++||++|. ++.++++.+.+.+.
T Consensus 154 i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 154 VRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 555555555 479999999983 45666666665443
No 239
>PRK12735 elongation factor Tu; Reviewed
Probab=99.26 E-value=4.7e-11 Score=107.37 Aligned_cols=150 Identities=13% Similarity=0.073 Sum_probs=89.9
Q ss_pred cccccEEEEEEEcCCCCchhhhchhhhccc-----cccc-----------cccccCce-----------eEEEEEeCCCC
Q psy5810 46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQ-----VENF-----------VQTYHPDV-----------FFIVYSDTNHT 98 (250)
Q Consensus 46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~-----~~~~-----------~~~~~~~~-----------~~i~i~Dt~g~ 98 (250)
..+...++|+++|..++|||||++ ++++. ...+ ...-|.++ ..+.++||||.
T Consensus 7 ~~~~~~~~i~iiGhvd~GKSTL~~-~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh 85 (396)
T PRK12735 7 ERTKPHVNVGTIGHVDHGKTTLTA-AITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGH 85 (396)
T ss_pred CCCCCeEEEEEECcCCCCHHHHHH-HHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCH
Confidence 345566889999999999999998 77641 0110 00112211 15778999997
Q ss_pred ccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEE-EEeeCCCccCCCcc---CHH
Q psy5810 99 QRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQV---THS 174 (250)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v---~~~ 174 (250)
+..+ ..+. ..+..+|++++|+|..+...-+ ..+.+..+.. .++|.+ ++.||+|+.+.... ..+
T Consensus 86 ~~f~-----~~~~---~~~~~aD~~llVvda~~g~~~q-t~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ 152 (396)
T PRK12735 86 ADYV-----KNMI---TGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEM 152 (396)
T ss_pred HHHH-----HHHH---hhhccCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHH
Confidence 5221 1111 1122789999999998743222 2233333322 457854 67999998532211 123
Q ss_pred HHHHHHHHhC-----CeEEEEecCCCC----------CHHHHHHHHHHHH
Q psy5810 175 DGKKLAYAWG-----VKFVETSVGLVY----------KTDELLVGIARQA 209 (250)
Q Consensus 175 ~~~~~~~~~~-----~~~~evSa~~~~----------~I~~lf~~l~~~i 209 (250)
+...+.+.++ ++++++||++|. ++.++++.|...+
T Consensus 153 ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~ 202 (396)
T PRK12735 153 EVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYI 202 (396)
T ss_pred HHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcC
Confidence 4555565554 579999999985 5666666666543
No 240
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.26 E-value=1.1e-11 Score=98.82 Aligned_cols=106 Identities=12% Similarity=0.144 Sum_probs=63.8
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccccCc---e---------eEEEEEeCCCCccccCCCccccccccccccCCCc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD---V---------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPD 121 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~---~---------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad 121 (250)
|+++|++|+|||+|++ +|..+ .+.+|+..- . ..+.+.|+||..+-. ..+ .+....+..+-
T Consensus 6 vlL~Gps~SGKTaLf~-~L~~~--~~~~T~tS~e~n~~~~~~~~~~~~~~lvD~PGH~rlr-~~~----~~~~~~~~~~k 77 (181)
T PF09439_consen 6 VLLVGPSGSGKTALFS-QLVNG--KTVPTVTSMENNIAYNVNNSKGKKLRLVDIPGHPRLR-SKL----LDELKYLSNAK 77 (181)
T ss_dssp EEEE-STTSSHHHHHH-HHHHS--S---B---SSEEEECCGSSTCGTCECEEEETT-HCCC-HHH----HHHHHHHGGEE
T ss_pred EEEEcCCCCCHHHHHH-HHhcC--CcCCeeccccCCceEEeecCCCCEEEEEECCCcHHHH-HHH----HHhhhchhhCC
Confidence 9999999999999998 78774 333322221 1 157789999986321 111 11100011689
Q ss_pred EEEEEEeCCC-HHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccC
Q psy5810 122 VFVIVYSVIE-RKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLER 167 (250)
Q Consensus 122 ~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~ 167 (250)
++|+|.|.+. +..+.++.+++-.+..... ...+|+++++||.|+..
T Consensus 78 ~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 78 GIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred EEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence 9999999974 5566666666655544322 45789999999999853
No 241
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.25 E-value=3e-11 Score=103.00 Aligned_cols=98 Identities=17% Similarity=0.098 Sum_probs=62.3
Q ss_pred EEEEcCCCCchhhhchhhhccccc---cc---c---------cc-------ccCce-----------eEEEEEeCCCCcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVE---NF---V---------QT-------YHPDV-----------FFIVYSDTNHTQR 100 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~---~~---~---------~~-------~~~~~-----------~~i~i~Dt~g~~~ 100 (250)
|+|+|..|+|||||++ +++.... .. . .. .+.++ .++.+|||+|+..
T Consensus 5 i~ivGh~~~GKTTL~e-~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~~d 83 (267)
T cd04169 5 FAIISHPDAGKTTLTE-KLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEcCCCCCHHHHHH-HHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCchH
Confidence 9999999999999999 6653201 00 0 00 01111 1678999999863
Q ss_pred cc--CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 101 CL--TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 101 ~~--~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
.. ....++ .+|++|+|+|.++...- ....|+.... ..++|+++++||+|+.+
T Consensus 84 f~~~~~~~l~----------~aD~~IlVvda~~g~~~-~~~~i~~~~~----~~~~P~iivvNK~D~~~ 137 (267)
T cd04169 84 FSEDTYRTLT----------AVDSAVMVIDAAKGVEP-QTRKLFEVCR----LRGIPIITFINKLDREG 137 (267)
T ss_pred HHHHHHHHHH----------HCCEEEEEEECCCCccH-HHHHHHHHHH----hcCCCEEEEEECCccCC
Confidence 21 222233 79999999999875332 2233333332 24789999999999864
No 242
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.25 E-value=2.8e-11 Score=103.63 Aligned_cols=134 Identities=11% Similarity=0.031 Sum_probs=76.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccccccccc----------ccCcee---------------EEEEEeCCCCccccCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQT----------YHPDVF---------------FIVYSDTNHTQRCLTPM 105 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~----------~~~~~~---------------~i~i~Dt~g~~~~~~~~ 105 (250)
.++|+++|.+|+|||||+| ++.+. .+... +..++. .+.+|||+|-.......
T Consensus 4 ~f~I~vvG~sg~GKSTliN-~L~~~--~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~ 80 (276)
T cd01850 4 QFNIMVVGESGLGKSTFIN-TLFNT--KLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNS 80 (276)
T ss_pred EEEEEEEcCCCCCHHHHHH-HHHcC--CCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccch
Confidence 4679999999999999999 77663 21111 222221 57899999942111100
Q ss_pred --------ccccc-----cccc-----cccC--CCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810 106 --------PFCSQ-----VENF-----VQTY--HPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKAD 164 (250)
Q Consensus 106 --------~~~~~-----~~~~-----~~~~--~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~D 164 (250)
|.... .++. .... .+|+++++++.+.. .+... .+.++.+. ..+|+++|+||+|
T Consensus 81 ~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~-----~~v~vi~VinK~D 154 (276)
T cd01850 81 DCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLS-----KRVNIIPVIAKAD 154 (276)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHh-----ccCCEEEEEECCC
Confidence 00000 0000 0111 47788888877642 11111 22333332 2689999999999
Q ss_pred ccC--CCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 165 LER--RRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 165 l~~--~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
+.. +.........+.+..++++++.....
T Consensus 155 ~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 155 TLTPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 843 22233555677788889988876553
No 243
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.24 E-value=1.4e-11 Score=90.82 Aligned_cols=140 Identities=19% Similarity=0.080 Sum_probs=96.2
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER 132 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~ 132 (250)
|+++||..|+|||||.+ .+.+....+..|....+..-...||+|.+-. .+.+|....-... ++|++++|-..+++
T Consensus 3 ri~~vG~~gcGKTtL~q-~L~G~~~lykKTQAve~~d~~~IDTPGEy~~-~~~~Y~aL~tt~~---dadvi~~v~~and~ 77 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQ-SLYGNDTLYKKTQAVEFNDKGDIDTPGEYFE-HPRWYHALITTLQ---DADVIIYVHAANDP 77 (148)
T ss_pred eeEEecccccCchhHHH-HhhcchhhhcccceeeccCccccCCchhhhh-hhHHHHHHHHHhh---ccceeeeeecccCc
Confidence 49999999999999997 7777544444444444433335799997621 1233332222222 79999999999998
Q ss_pred HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCCCCHHHHHHHHHH
Q psy5810 133 KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 133 ~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~I~~lf~~l~~ 207 (250)
+|--.- .+ ...-..|+|-|.+|.|+.++.. .+..++|..+-|.. ++++|+.++.|+++++..|..
T Consensus 78 ~s~f~p-----~f---~~~~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~ 143 (148)
T COG4917 78 ESRFPP-----GF---LDIGVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS 143 (148)
T ss_pred cccCCc-----cc---ccccccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence 652110 01 1113456999999999976443 35667788878865 999999999999999999875
No 244
>PRK13351 elongation factor G; Reviewed
Probab=99.24 E-value=5.3e-11 Score=114.15 Aligned_cols=100 Identities=12% Similarity=-0.068 Sum_probs=69.1
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccc-----------cccc-------cccCcee-----------EEEEEeCCCCc--
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-----------NFVQ-------TYHPDVF-----------FIVYSDTNHTQ-- 99 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-----------~~~~-------~~~~~~~-----------~i~i~Dt~g~~-- 99 (250)
..+|+|+|..|+|||||++ +++.... .+.. ..+.++. .+.+|||+|+.
T Consensus 8 irni~iiG~~~~GKTtL~~-~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~df 86 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTE-RILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGHIDF 86 (687)
T ss_pred ccEEEEECCCCCcchhHHH-HHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCcHHH
Confidence 3459999999999999998 7754211 0110 1233332 67899999985
Q ss_pred cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
...+..+++ .+|++++|+|.++..+......|. .+.. .++|+++++||+|+.
T Consensus 87 ~~~~~~~l~----------~aD~~ilVvd~~~~~~~~~~~~~~-~~~~----~~~p~iiviNK~D~~ 138 (687)
T PRK13351 87 TGEVERSLR----------VLDGAVVVFDAVTGVQPQTETVWR-QADR----YGIPRLIFINKMDRV 138 (687)
T ss_pred HHHHHHHHH----------hCCEEEEEEeCCCCCCHHHHHHHH-HHHh----cCCCEEEEEECCCCC
Confidence 233334444 799999999999987776655553 3322 478999999999985
No 245
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.20 E-value=4.5e-11 Score=88.93 Aligned_cols=100 Identities=18% Similarity=0.176 Sum_probs=60.0
Q ss_pred EEEEEcCCCCchhhhchhhhccccc-c----ccccccCcee-------EEEEEeCCCCccccCC----Cccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVE-N----FVQTYHPDVF-------FIVYSDTNHTQRCLTP----MPFCSQVENFVQ 116 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~-~----~~~~~~~~~~-------~i~i~Dt~g~~~~~~~----~~~~~~~~~~~~ 116 (250)
+|+|+|.+|||||||+| .+++... . ...|..+... .+.++||+|-...... ..+....+..
T Consensus 1 ~V~iiG~~~~GKSTlin-~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~-- 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLIN-ALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI-- 77 (116)
T ss_dssp EEEEEESTTSSHHHHHH-HHHTSTSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--
T ss_pred CEEEECCCCCCHHHHHH-HHhccccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--
Confidence 58999999999999998 7887311 1 1112222111 5679999996421100 0111111222
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANK 162 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK 162 (250)
..+|++++|+|.+++.. +...+++.++ + .+.|+++|.||
T Consensus 78 -~~~d~ii~vv~~~~~~~-~~~~~~~~~l-~----~~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPIT-EDDKNILREL-K----NKKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSH-HHHHHHHHHH-H----TTSEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCC-HHHHHHHHHH-h----cCCCEEEEEcC
Confidence 27999999999888422 2223333434 1 57899999998
No 246
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.19 E-value=9e-11 Score=97.32 Aligned_cols=107 Identities=12% Similarity=0.161 Sum_probs=67.8
Q ss_pred EEEEcCCCCchhhhchhhhcccccccc----------c-------------------cccCc--------eeEEEEEeCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFV----------Q-------------------TYHPD--------VFFIVYSDTN 96 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~----------~-------------------~~~~~--------~~~i~i~Dt~ 96 (250)
|+++|..++|||||+. +++....... + .+... -..+.+|||+
T Consensus 3 vaiiGhvd~GKTTL~d-~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 3 ICIIAHVDHGKTTLSD-SLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred EEEECCCCCCHHHHHH-HHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 8999999999999998 6653211000 0 00000 2256789999
Q ss_pred CCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc-CCCccCH
Q psy5810 97 HTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE-RRRQVTH 173 (250)
Q Consensus 97 g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-~~~~v~~ 173 (250)
|+.. ......++ .+|++++|+|+++..+.+... .+..... .++|+++++||+|+. .+..++.
T Consensus 82 G~~~f~~~~~~~l~----------~aD~~ilVvD~~~g~~~~t~~-~l~~~~~----~~~p~ilviNKiD~~~~e~~~~~ 146 (222)
T cd01885 82 GHVDFSSEVTAALR----------LCDGALVVVDAVEGVCVQTET-VLRQALK----ERVKPVLVINKIDRLILELKLSP 146 (222)
T ss_pred CccccHHHHHHHHH----------hcCeeEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECCCcchhhhcCCH
Confidence 9863 22233334 899999999999876665432 2222322 468999999999974 3344554
Q ss_pred HHH
Q psy5810 174 SDG 176 (250)
Q Consensus 174 ~~~ 176 (250)
+++
T Consensus 147 ~~~ 149 (222)
T cd01885 147 EEA 149 (222)
T ss_pred HHH
Confidence 443
No 247
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.19 E-value=1.8e-10 Score=100.66 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=84.0
Q ss_pred EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810 89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLWDSKYIGEKAV 156 (250)
Q Consensus 89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~~~~~~~~~pi 156 (250)
.+.+||++||. +..|..++. +++++++|.|+++. ..+.+....++.+.....-.++|+
T Consensus 162 ~~~~~DvgGq~~~R~kW~~~f~----------~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pi 231 (317)
T cd00066 162 KFRMFDVGGQRSERKKWIHCFE----------DVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSI 231 (317)
T ss_pred EEEEECCCCCcccchhHHHHhC----------CCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCE
Confidence 45579999985 788888888 89999999999874 456666667777766555568999
Q ss_pred EEEeeCCCccCC----------------CccCHHHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 157 ILVANKADLERR----------------RQVTHSDGKKLAYA----------WGVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 157 ilv~nK~Dl~~~----------------~~v~~~~~~~~~~~----------~~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+|++||.|+-.+ ..-+.+++..+... ..+-...++|.+..++..+|+.+...+.
T Consensus 232 ll~~NK~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~ 311 (317)
T cd00066 232 ILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL 311 (317)
T ss_pred EEEccChHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence 999999997211 02244555555432 1223467899999999999999988877
Q ss_pred hhh
Q psy5810 211 LNK 213 (250)
Q Consensus 211 ~~~ 213 (250)
...
T Consensus 312 ~~~ 314 (317)
T cd00066 312 QNN 314 (317)
T ss_pred HHH
Confidence 643
No 248
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.17 E-value=1.5e-10 Score=107.34 Aligned_cols=99 Identities=14% Similarity=0.102 Sum_probs=62.6
Q ss_pred EEEEEEcCCCCchhhhchhhhccccc------cc--------c-c-------cccCce-----------eEEEEEeCCCC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVE------NF--------V-Q-------TYHPDV-----------FFIVYSDTNHT 98 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~------~~--------~-~-------~~~~~~-----------~~i~i~Dt~g~ 98 (250)
-+|+|+|..++|||||++ +++...+ .. . . .-+.++ ..+.+|||+|.
T Consensus 11 Rni~IiGh~daGKTTL~e-~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTPG~ 89 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTE-KLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGH 89 (526)
T ss_pred CEEEEECCCCCCHHHHHH-HHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECCCc
Confidence 349999999999999998 6642100 00 0 0 001111 15789999998
Q ss_pred ccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 99 QRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 99 ~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
... .....+. .+|++|+|+|.++...- ....++... ...++|+++++||+|+.
T Consensus 90 ~df~~~~~~~l~----------~aD~aIlVvDa~~gv~~-~t~~l~~~~----~~~~iPiiv~iNK~D~~ 144 (526)
T PRK00741 90 EDFSEDTYRTLT----------AVDSALMVIDAAKGVEP-QTRKLMEVC----RLRDTPIFTFINKLDRD 144 (526)
T ss_pred hhhHHHHHHHHH----------HCCEEEEEEecCCCCCH-HHHHHHHHH----HhcCCCEEEEEECCccc
Confidence 522 1222333 79999999999875322 223333333 22579999999999984
No 249
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.17 E-value=3e-10 Score=92.71 Aligned_cols=82 Identities=18% Similarity=0.086 Sum_probs=54.2
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH--hCCeEEEEecCCCCC
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA--WGVKFVETSVGLVYK 197 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~--~~~~~~evSa~~~~~ 197 (250)
+|.+|.|+|+++.++... .+...+ ...=+++.||+|+.+...-..+...+..+. .+.+++++||++|+|
T Consensus 113 ~~~~i~vvD~~~~~~~~~--~~~~qi-------~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~g 183 (199)
T TIGR00101 113 ADLTIFVIDVAAGDKIPR--KGGPGI-------TRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEG 183 (199)
T ss_pred hCcEEEEEEcchhhhhhh--hhHhHh-------hhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCC
Confidence 688999999997665321 111111 122378899999864212223444444444 356799999999999
Q ss_pred HHHHHHHHHHHHH
Q psy5810 198 TDELLVGIARQAG 210 (250)
Q Consensus 198 I~~lf~~l~~~i~ 210 (250)
++++|+++.+.+.
T Consensus 184 i~el~~~i~~~~~ 196 (199)
T TIGR00101 184 LDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999986543
No 250
>KOG1490|consensus
Probab=99.17 E-value=2.4e-10 Score=102.03 Aligned_cols=162 Identities=14% Similarity=0.035 Sum_probs=105.6
Q ss_pred EEEEcCCCCchhhhchhhhcccccc-----------ccccccCceeEEEEEeCCCCc-cccCCCccccccccccccC-CC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN-----------FVQTYHPDVFFIVYSDTNHTQ-RCLTPMPFCSQVENFVQTY-HP 120 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~-----------~~~~~~~~~~~i~i~Dt~g~~-~~~~~~~~~~~~~~~~~~~-~a 120 (250)
++|+|-||||||||++ ....+... |.......+..+++.||||.- +.+-....-.+..-+ +++ =-
T Consensus 171 lllcG~PNVGKSSf~~-~vtradvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT-ALAHLr 248 (620)
T KOG1490|consen 171 LLVCGYPNVGKSSFNN-KVTRADDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT-ALAHLR 248 (620)
T ss_pred EEEecCCCCCcHhhcc-cccccccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH-HHHHhh
Confidence 9999999999999997 55543222 222223333378899999964 222222111110000 000 13
Q ss_pred cEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH---HHHHHhCCeEEEEecCCC
Q psy5810 121 DVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK---KLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 121 d~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~---~~~~~~~~~~~evSa~~~ 195 (250)
.+++++.|++... |.+.--..+..|.... .+.|.|+|.||+|+-....++++... .....-+++++++|+.+.
T Consensus 249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e 326 (620)
T KOG1490|consen 249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE 326 (620)
T ss_pred hhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence 6788899998754 5555455666665443 68899999999998665666655433 233444588999999999
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhHH
Q psy5810 196 YKTDELLVGIARQAGLNKKRNKLL 219 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~~~~~~~~ 219 (250)
+|+.++-+.....++..+-.....
T Consensus 327 egVm~Vrt~ACe~LLa~RVE~Klk 350 (620)
T KOG1490|consen 327 EGVMDVRTTACEALLAARVEQKLK 350 (620)
T ss_pred hceeeHHHHHHHHHHHHHHHHHhh
Confidence 999999999999888766554443
No 251
>PRK13768 GTPase; Provisional
Probab=99.17 E-value=1.8e-10 Score=97.54 Aligned_cols=113 Identities=20% Similarity=0.060 Sum_probs=68.6
Q ss_pred EEEEEeCCCCcccc-----CCCccccccccccccCCCcEEEEEEeCCCHHhHHHH--HHHHHHHHhhhCCCCCcEEEEee
Q psy5810 89 FIVYSDTNHTQRCL-----TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKA--EDMLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~-----~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~--~~~~~~i~~~~~~~~~piilv~n 161 (250)
++.+||++|+.+.. +..+++ ..... .++++++|+|.++.....+. ..|+....+.. .+.|+++|.|
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~----~l~~~-~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~n 170 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVE----RLSGS-SKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLN 170 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHH----HHHhc-CCeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEE
Confidence 56789999985322 222222 11110 27999999999664433222 23333222221 4799999999
Q ss_pred CCCccCCCccCHHHHHH----------------------------HHHHhC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 162 KADLERRRQVTHSDGKK----------------------------LAYAWG--VKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 162 K~Dl~~~~~v~~~~~~~----------------------------~~~~~~--~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
|+|+...... ++... ..+..+ .+++++||+++.|++++.+++.+.+.
T Consensus 171 K~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 171 KADLLSEEEL--ERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hHhhcCchhH--HHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 9998543221 11111 122334 46899999999999999999987653
No 252
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.16 E-value=1.1e-10 Score=107.06 Aligned_cols=141 Identities=11% Similarity=0.064 Sum_probs=81.4
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccc-----------ccc----------------------Ccee------
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-----------TYH----------------------PDVF------ 88 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-----------~~~----------------------~~~~------ 88 (250)
....++|+++|..++|||||+. +++........ ..| .++.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~-~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~ 102 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIG-RLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF 102 (474)
T ss_pred ccCceEEEEECCCCCChHHHHH-HHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEe
Confidence 3456889999999999999999 66543111110 011 1111
Q ss_pred -----EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810 89 -----FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA 163 (250)
Q Consensus 89 -----~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~ 163 (250)
.+.+|||||.+... ..+.. .+..+|++++|+|.+....-.....|. +.... ...|++++.||+
T Consensus 103 ~~~~~~i~~iDTPGh~~f~-----~~~~~---~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~l--g~~~iIvvvNKi 170 (474)
T PRK05124 103 STEKRKFIIADTPGHEQYT-----RNMAT---GASTCDLAILLIDARKGVLDQTRRHSF--IATLL--GIKHLVVAVNKM 170 (474)
T ss_pred ccCCcEEEEEECCCcHHHH-----HHHHH---HHhhCCEEEEEEECCCCccccchHHHH--HHHHh--CCCceEEEEEee
Confidence 57789999965211 11111 122799999999997643211111111 11111 124789999999
Q ss_pred CccCCCccCHH----HHHHHHHHhC----CeEEEEecCCCCCHHHH
Q psy5810 164 DLERRRQVTHS----DGKKLAYAWG----VKFVETSVGLVYKTDEL 201 (250)
Q Consensus 164 Dl~~~~~v~~~----~~~~~~~~~~----~~~~evSa~~~~~I~~l 201 (250)
|+.+...-..+ +...+.+..+ .+++++||++|.|+.++
T Consensus 171 D~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 171 DLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred ccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 98532211111 2223333333 67999999999999764
No 253
>CHL00071 tufA elongation factor Tu
Probab=99.14 E-value=3.6e-10 Score=102.09 Aligned_cols=138 Identities=12% Similarity=0.081 Sum_probs=83.1
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhccccccc----------------cccccCcee-----------EEEEEeCCCCc
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENF----------------VQTYHPDVF-----------FIVYSDTNHTQ 99 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~----------------~~~~~~~~~-----------~i~i~Dt~g~~ 99 (250)
.+...++|+++|..++|||||++ ++++..... ...-+.++. .+.+.||||..
T Consensus 8 ~~~~~~~i~i~Gh~d~GKSTL~~-~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~ 86 (409)
T CHL00071 8 RKKPHVNIGTIGHVDHGKTTLTA-AITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA 86 (409)
T ss_pred CCCCeEEEEEECCCCCCHHHHHH-HHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH
Confidence 35566889999999999999999 776531100 000111211 46789999954
Q ss_pred cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCcc---CHHH
Q psy5810 100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQV---THSD 175 (250)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~ 175 (250)
. +...+.. .+..+|++++|+|......- ...+.+..+.. .++| +|++.||+|+.+.... ..++
T Consensus 87 ~-----~~~~~~~---~~~~~D~~ilVvda~~g~~~-qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~ 153 (409)
T CHL00071 87 D-----YVKNMIT---GAAQMDGAILVVSAADGPMP-QTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELE 153 (409)
T ss_pred H-----HHHHHHH---HHHhCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHH
Confidence 2 2221111 22279999999999864321 22223333322 3678 7789999998542221 1224
Q ss_pred HHHHHHHhC-----CeEEEEecCCCCCH
Q psy5810 176 GKKLAYAWG-----VKFVETSVGLVYKT 198 (250)
Q Consensus 176 ~~~~~~~~~-----~~~~evSa~~~~~I 198 (250)
...+.+..+ ++++++||.+|.|+
T Consensus 154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n~ 181 (409)
T CHL00071 154 VRELLSKYDFPGDDIPIVSGSALLALEA 181 (409)
T ss_pred HHHHHHHhCCCCCcceEEEcchhhcccc
Confidence 445555544 57999999999754
No 254
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.14 E-value=3.2e-10 Score=101.65 Aligned_cols=55 Identities=22% Similarity=0.130 Sum_probs=36.8
Q ss_pred CCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH-HHHHHHHHHHh
Q psy5810 153 EKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE-LLVGIARQAGL 211 (250)
Q Consensus 153 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~-lf~~l~~~i~~ 211 (250)
..|+++|+||.|+.... +....+.+.-+..++.+||+.+.++.+ +.+.+++.+..
T Consensus 217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~ 272 (396)
T PRK09602 217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPG 272 (396)
T ss_pred CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCC
Confidence 48999999999964211 112222222234589999999999998 66666665444
No 255
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.13 E-value=1.7e-10 Score=104.01 Aligned_cols=136 Identities=14% Similarity=0.108 Sum_probs=78.8
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccc-----------ccc----------------------Ccee----------
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-----------TYH----------------------PDVF---------- 88 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-----------~~~----------------------~~~~---------- 88 (250)
++|+++|..++|||||+. +++........ ..+ .+++
T Consensus 1 ~~~~~vGhvd~GKSTL~~-~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIG-RLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK 79 (406)
T ss_pred CeEEEECCCCCCchhhhH-HHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC
Confidence 469999999999999999 66543111100 011 1111
Q ss_pred -EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 89 -FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 89 -~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
.+.++||||.+..... +.. .+..+|++++|+|......-+..+.|. .+ ... ...+++++.||+|+.+
T Consensus 80 ~~~~liDtPGh~~f~~~-----~~~---~~~~aD~allVVda~~G~~~qt~~~~~-~~-~~~--~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 80 RKFIVADTPGHEQYTRN-----MAT---GASTADLAVLLVDARKGVLEQTRRHSY-IA-SLL--GIRHVVLAVNKMDLVD 147 (406)
T ss_pred eEEEEEeCCCHHHHHHH-----HHH---HHhhCCEEEEEEECCCCCccccHHHHH-HH-HHc--CCCcEEEEEEeccccc
Confidence 5778999997532111 111 122799999999987653222212221 11 111 2236899999999853
Q ss_pred CCccC----HHHHHHHHHHhC---CeEEEEecCCCCCHHH
Q psy5810 168 RRQVT----HSDGKKLAYAWG---VKFVETSVGLVYKTDE 200 (250)
Q Consensus 168 ~~~v~----~~~~~~~~~~~~---~~~~evSa~~~~~I~~ 200 (250)
...-. .++...+.+..+ ++++++||++|.|+.+
T Consensus 148 ~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 148 YDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 21110 122333344444 4699999999999875
No 256
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.13 E-value=2.7e-10 Score=103.77 Aligned_cols=136 Identities=13% Similarity=0.076 Sum_probs=84.4
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcccccc--------c-----------------------cccccCcee--------
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVEN--------F-----------------------VQTYHPDVF-------- 88 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~--------~-----------------------~~~~~~~~~-------- 88 (250)
...++.|+++|..++|||||+. +++..... + ....+.++.
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g-~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~ 82 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTG-HLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET 82 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHH-HHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC
Confidence 3445779999999999999997 55432110 0 000111111
Q ss_pred ---EEEEEeCCCCccccC--CCccccccccccccCCCcEEEEEEeCCCHHhHH-------HHHHHHHHHHhhhCCCCCc-
Q psy5810 89 ---FIVYSDTNHTQRCLT--PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFK-------KAEDMLKTLWDSKYIGEKA- 155 (250)
Q Consensus 89 ---~i~i~Dt~g~~~~~~--~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~-------~~~~~~~~i~~~~~~~~~p- 155 (250)
.+.+.||||++..+. ...+. .+|++|+|+|.++ .+|+ ...+.+.... ..++|
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~----------~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~----~~gi~~ 147 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTS----------QADCAVLIIDSTT-GGFEAGISKDGQTREHALLAF----TLGVKQ 147 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhh----------hccEEEEEEEccc-CceecccCCCchHHHHHHHHH----HcCCCc
Confidence 567899999863322 22233 7999999999987 2232 2222222221 13564
Q ss_pred EEEEeeCCCccCCCcc-------CHHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy5810 156 VILVANKADLERRRQV-------THSDGKKLAYAWG-----VKFVETSVGLVYKTDE 200 (250)
Q Consensus 156 iilv~nK~Dl~~~~~v-------~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~ 200 (250)
+|++.||+|+... .. ..+++..+++..| ++|+++||++|.|+.+
T Consensus 148 iIV~vNKmD~~~~-~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 148 MICCCNKMDATTP-KYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred EEEEEEcccCCch-hhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 7889999997521 11 1345666777666 5699999999999854
No 257
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.13 E-value=5.2e-10 Score=91.92 Aligned_cols=56 Identities=25% Similarity=0.132 Sum_probs=41.9
Q ss_pred CCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 153 EKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 153 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
..|.++++||+|+.+.......+..+..+..+ .+++++||+++.|++++|+++.+.
T Consensus 148 ~~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 148 KEADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hhCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999986533233344555555444 789999999999999999999864
No 258
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.12 E-value=2.3e-09 Score=87.20 Aligned_cols=155 Identities=14% Similarity=0.058 Sum_probs=87.9
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccc-------cccCce-------eEEEEEeCCCCccccCC-Ccccccccc--cc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------TYHPDV-------FFIVYSDTNHTQRCLTP-MPFCSQVEN--FV 115 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------~~~~~~-------~~i~i~Dt~g~~~~~~~-~~~~~~~~~--~~ 115 (250)
+|+++|.+|||||||+| .+++.. .+.. |..... ..+.++||||-...... ......+.. ..
T Consensus 2 ~i~lvG~~g~GKSsl~N-~ilg~~-~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 2 RLVLVGKTGAGKSATGN-TILGRE-VFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred EEEEECCCCCCHHHHHH-HhhCCC-ccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 59999999999999999 777642 1211 111111 16788999996532111 111111111 11
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC-CCCcEEEEeeCCCccCCCccC------HHHHHHHHHHhCCeEE
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI-GEKAVILVANKADLERRRQVT------HSDGKKLAYAWGVKFV 188 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~------~~~~~~~~~~~~~~~~ 188 (250)
...++|++++|.|+.+ .+-++ ...++.+.+..+. .-.++++|.|+.|.-....+. ....+.+.+..+-.|+
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d-~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~ 157 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEE-EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYV 157 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHH-HHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEE
Confidence 1237899999999987 22221 2223333332221 124788999999953322111 1334555566565565
Q ss_pred EEe-----cCCCCCHHHHHHHHHHHHHh
Q psy5810 189 ETS-----VGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 189 evS-----a~~~~~I~~lf~~l~~~i~~ 211 (250)
..+ +..+.++.++++.+.+.+.+
T Consensus 158 ~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 158 AFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred EEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 554 44567788888888877765
No 259
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.10 E-value=5.3e-10 Score=95.45 Aligned_cols=127 Identities=16% Similarity=0.044 Sum_probs=75.3
Q ss_pred EEEEcCCCCchhhhchhhhcccccc------cc----------------ccccCce-------eEEEEEeCCCCcc--cc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN------FV----------------QTYHPDV-------FFIVYSDTNHTQR--CL 102 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~------~~----------------~~~~~~~-------~~i~i~Dt~g~~~--~~ 102 (250)
|+++|.+|+|||||++ +++..... .. .++.... ..+.+|||+|... ..
T Consensus 2 i~ivG~~gsGKStL~~-~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 2 IALVGHSGSGKTTLAE-ALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred EEEECCCCCCHHHHHH-HHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 8999999999999998 66432110 00 0111111 1677899999752 22
Q ss_pred CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH
Q psy5810 103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182 (250)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 182 (250)
+...+. .+|++++|+|.++.........|. .+. ..++|.++++||+|..... ..+....+...
T Consensus 81 ~~~~l~----------~aD~~i~Vvd~~~g~~~~~~~~~~-~~~----~~~~p~iivvNK~D~~~~~--~~~~~~~l~~~ 143 (268)
T cd04170 81 TRAALR----------AADAALVVVSAQSGVEVGTEKLWE-FAD----EAGIPRIIFINKMDRERAD--FDKTLAALQEA 143 (268)
T ss_pred HHHHHH----------HCCEEEEEEeCCCCCCHHHHHHHH-HHH----HcCCCEEEEEECCccCCCC--HHHHHHHHHHH
Confidence 233333 799999999999876554333332 232 2468999999999986431 12233344445
Q ss_pred hCCeEE--EEecCCCCCH
Q psy5810 183 WGVKFV--ETSVGLVYKT 198 (250)
Q Consensus 183 ~~~~~~--evSa~~~~~I 198 (250)
++.+++ .+....+.++
T Consensus 144 ~~~~~~~~~ip~~~~~~~ 161 (268)
T cd04170 144 FGRPVVPLQLPIGEGDDF 161 (268)
T ss_pred hCCCeEEEEecccCCCce
Confidence 565433 3344554444
No 260
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.10 E-value=3.4e-10 Score=107.61 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=80.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccc-----------ccc----------------------Ccee--------
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-----------TYH----------------------PDVF-------- 88 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-----------~~~----------------------~~~~-------- 88 (250)
..++|+++|..++|||||++ +++........ ..+ .++.
T Consensus 23 ~~~~i~iiGh~~~GKSTL~~-~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 23 SLLRFITCGSVDDGKSTLIG-RLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CeeEEEEECCCCCChHHHHH-HHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 45789999999999999999 66653111110 011 1111
Q ss_pred ---EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810 89 ---FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 165 (250)
Q Consensus 89 ---~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 165 (250)
.+.++||||.+..... +.. .+..+|++++|+|.+....-+.... +..+... ...+++++.||+|+
T Consensus 102 ~~~~~~liDtPG~~~f~~~-----~~~---~~~~aD~~llVvda~~g~~~~t~e~-~~~~~~~---~~~~iivvvNK~D~ 169 (632)
T PRK05506 102 PKRKFIVADTPGHEQYTRN-----MVT---GASTADLAIILVDARKGVLTQTRRH-SFIASLL---GIRHVVLAVNKMDL 169 (632)
T ss_pred CCceEEEEECCChHHHHHH-----HHH---HHHhCCEEEEEEECCCCccccCHHH-HHHHHHh---CCCeEEEEEEeccc
Confidence 5678999997532111 111 1227999999999976532211111 1112111 23578999999998
Q ss_pred cCC-Cc-cC--HHHHHHHHHHhCC---eEEEEecCCCCCHHH
Q psy5810 166 ERR-RQ-VT--HSDGKKLAYAWGV---KFVETSVGLVYKTDE 200 (250)
Q Consensus 166 ~~~-~~-v~--~~~~~~~~~~~~~---~~~evSa~~~~~I~~ 200 (250)
.+. .. +. ..+..++.+..++ +++++||++|.|+.+
T Consensus 170 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 170 VDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred ccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 531 11 10 1223334445554 589999999999874
No 261
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.09 E-value=7.8e-10 Score=97.47 Aligned_cols=115 Identities=12% Similarity=0.121 Sum_probs=83.5
Q ss_pred EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810 89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLWDSKYIGEKAV 156 (250)
Q Consensus 89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~~~~~~~~~pi 156 (250)
.+.+||.+||. +..|..+|. +++++|+|.|+++. ..+++....++.+.....-.++|+
T Consensus 185 ~~~~~DvgGqr~~R~kW~~~f~----------~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~pi 254 (342)
T smart00275 185 FFRMFDVGGQRSERKKWIHCFD----------NVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSI 254 (342)
T ss_pred EEEEEecCCchhhhhhHHHHhC----------CCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcE
Confidence 45679999985 788888888 89999999999973 456666667777766555578999
Q ss_pred EEEeeCCCccCCC---------------ccCHHHHHHHHHH-----h------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 157 ILVANKADLERRR---------------QVTHSDGKKLAYA-----W------GVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 157 ilv~nK~Dl~~~~---------------~v~~~~~~~~~~~-----~------~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+|++||.|+-.++ .-+.+.+..+... . .+-.+.++|.+-.++..+|+.+...+.
T Consensus 255 il~~NK~D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~ 334 (342)
T smart00275 255 ILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIIL 334 (342)
T ss_pred EEEEecHHhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHH
Confidence 9999999982110 1234445444322 1 122468889999999999999888777
Q ss_pred hhh
Q psy5810 211 LNK 213 (250)
Q Consensus 211 ~~~ 213 (250)
+..
T Consensus 335 ~~~ 337 (342)
T smart00275 335 QRN 337 (342)
T ss_pred HHH
Confidence 544
No 262
>PLN03126 Elongation factor Tu; Provisional
Probab=99.09 E-value=4.8e-10 Score=102.75 Aligned_cols=137 Identities=12% Similarity=0.097 Sum_probs=83.4
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccc----------------cccccccCce-----------eEEEEEeCCCCcc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVE----------------NFVQTYHPDV-----------FFIVYSDTNHTQR 100 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~----------------~~~~~~~~~~-----------~~i~i~Dt~g~~~ 100 (250)
+...++|+++|..++|||||++ +++.... .-....+.++ ..+.++||+|.++
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~-~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTA-ALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHH-HHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHH
Confidence 4567889999999999999998 7764200 0011112221 1567899999864
Q ss_pred ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCcc---CHHHH
Q psy5810 101 CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQV---THSDG 176 (250)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v---~~~~~ 176 (250)
.+..+ ... +..+|++++|+|..+...-+ ..+++..+.. .++| ++++.||+|+.+.... -.++.
T Consensus 157 f~~~~-----~~g---~~~aD~ailVVda~~G~~~q-t~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i 223 (478)
T PLN03126 157 YVKNM-----ITG---AAQMDGAILVVSGADGPMPQ-TKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEV 223 (478)
T ss_pred HHHHH-----HHH---HhhCCEEEEEEECCCCCcHH-HHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHH
Confidence 32222 111 12689999999988753322 2333333322 3677 7889999998542211 11234
Q ss_pred HHHHHHh-----CCeEEEEecCCCCCH
Q psy5810 177 KKLAYAW-----GVKFVETSVGLVYKT 198 (250)
Q Consensus 177 ~~~~~~~-----~~~~~evSa~~~~~I 198 (250)
..+.+.. +++++.+||.++.++
T Consensus 224 ~~~l~~~g~~~~~~~~vp~Sa~~g~n~ 250 (478)
T PLN03126 224 RELLSSYEFPGDDIPIISGSALLALEA 250 (478)
T ss_pred HHHHHhcCCCcCcceEEEEEccccccc
Confidence 4455543 467999999998643
No 263
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.09 E-value=2.8e-10 Score=97.20 Aligned_cols=98 Identities=12% Similarity=-0.017 Sum_probs=61.4
Q ss_pred EEEEcCCCCchhhhchhhhccccc---c---c-----c-------ccccCcee-----------EEEEEeCCCCcc--cc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVE---N---F-----V-------QTYHPDVF-----------FIVYSDTNHTQR--CL 102 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~---~---~-----~-------~~~~~~~~-----------~i~i~Dt~g~~~--~~ 102 (250)
|+++|.+|+|||||++ +++...+ . . . ..-+.++. .+.+|||||... ..
T Consensus 2 v~ivGh~~~GKTtL~~-~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 2 IGIIAHIDAGKTTTTE-RILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred EEEEcCCCCCHHHHHH-HHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 8999999999999999 6653211 0 0 0 01111221 677899999752 11
Q ss_pred CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
+...++ .+|++++|.|..+...-.. ...+..+.+ .++|++++.||+|+.+
T Consensus 81 ~~~~l~----------~aD~ailVVDa~~g~~~~t-~~~~~~~~~----~~~p~ivviNK~D~~~ 130 (270)
T cd01886 81 VERSLR----------VLDGAVAVFDAVAGVEPQT-ETVWRQADR----YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHH----------HcCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECCCCCC
Confidence 222233 7999999999987532222 223333322 4689999999999864
No 264
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.08 E-value=5.8e-10 Score=93.19 Aligned_cols=156 Identities=14% Similarity=0.064 Sum_probs=93.0
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCccccC-CCccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRCLT-PMPFCSQVENF 114 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~~~-~~~~~~~~~~~ 114 (250)
++.+++|+++|.+|+|||||+|..|.+. .......+... +.+.+||++|-+.... ..-++..+..+
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~-~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~~r~~~~d~ 114 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGE-VKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAEHRQLYRDY 114 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhcc-CceeeecccCCCchhhHHhhccccceEEecCCCcccchhhhHHHHHHHHHH
Confidence 5677889999999999999999444322 11112111111 3678999999763221 11122122222
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC--------CccCHH-------HHH--
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR--------RQVTHS-------DGK-- 177 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--------~~v~~~-------~~~-- 177 (250)
.. ..|.++.+.|..|+.-=-+..-|.. +... .-+.+++++.|.+|.... ..-+.. .+.
T Consensus 115 l~--~~DLvL~l~~~~draL~~d~~f~~d-Vi~~--~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~ 189 (296)
T COG3596 115 LP--KLDLVLWLIKADDRALGTDEDFLRD-VIIL--GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEAL 189 (296)
T ss_pred hh--hccEEEEeccCCCccccCCHHHHHH-HHHh--ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHH
Confidence 22 6899999999988752222222333 3221 234899999999997321 111111 111
Q ss_pred -HHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 178 -KLAYAWGVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 178 -~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+++++ =-|++.+|...+.|++++...++..+.
T Consensus 190 ~~~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp 222 (296)
T COG3596 190 GRLFQE-VKPVVAVSGRLPWGLKELVRALITALP 222 (296)
T ss_pred HHHHhh-cCCeEEeccccCccHHHHHHHHHHhCc
Confidence 11221 135888889999999999999998765
No 265
>KOG0090|consensus
Probab=99.07 E-value=2.8e-09 Score=85.74 Aligned_cols=146 Identities=16% Similarity=0.144 Sum_probs=87.9
Q ss_pred EEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCcc--ccCCCccccccccccccCCCcEE
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQR--CLTPMPFCSQVENFVQTYHPDVF 123 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~i 123 (250)
|+++|..++|||+|+. ++..+ .....+.+.+... ...+.|.||..+ .-...++. .-+.+-++
T Consensus 41 Vll~Gl~dSGKT~LF~-qL~~gs~~~TvtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~~~-------~~~~akai 112 (238)
T KOG0090|consen 41 VLLVGLSDSGKTSLFT-QLITGSHRGTVTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEYLK-------HNYSAKAI 112 (238)
T ss_pred EEEEecCCCCceeeee-ehhcCCccCeeeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHHcc-------ccccceeE
Confidence 9999999999999997 77773 1112223333322 456799999862 11111111 00148899
Q ss_pred EEEEeCCC-HHhHHHHHHHHHHHHhhh--CCCCCcEEEEeeCCCccCCC--cc----CHHHHHHH---------------
Q psy5810 124 VIVYSVIE-RKTFKKAEDMLKTLWDSK--YIGEKAVILVANKADLERRR--QV----THSDGKKL--------------- 179 (250)
Q Consensus 124 ilV~D~~~-~~Sf~~~~~~~~~i~~~~--~~~~~piilv~nK~Dl~~~~--~v----~~~~~~~~--------------- 179 (250)
|||.|..- +....++.+++-.+.-.. ....+|+++++||.|+--.+ ++ -+.|...+
T Consensus 113 VFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed~ 192 (238)
T KOG0090|consen 113 VFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDEDI 192 (238)
T ss_pred EEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 99998644 444555556655554433 24578999999999983211 00 00111100
Q ss_pred -----------------HHHhCCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 180 -----------------AYAWGVKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 180 -----------------~~~~~~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
+.+..+.|.|+|++++ +++++-.|+.+.
T Consensus 193 ~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~ 237 (238)
T KOG0090|consen 193 AKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA 237 (238)
T ss_pred cccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence 0112345889999999 999999988754
No 266
>KOG1707|consensus
Probab=99.07 E-value=1.3e-09 Score=99.05 Aligned_cols=156 Identities=15% Similarity=0.147 Sum_probs=103.4
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---EEEEEeCCCCccccCCCcc----ccccccccccCCCc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---FIVYSDTNHTQRCLTPMPF----CSQVENFVQTYHPD 121 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---~i~i~Dt~g~~~~~~~~~~----~~~~~~~~~~~~ad 121 (250)
-+.+.+.++|..++|||.|++ .|.+. .+...+..+.. .+...+..|+++.+.-... .....+.. ..+|
T Consensus 423 R~Vf~C~V~G~k~~GKs~lL~-sflgr--~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~ke--~~cD 497 (625)
T KOG1707|consen 423 RKVFQCFVVGPKNCGKSALLQ-SFLGR--SMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTSKE--AACD 497 (625)
T ss_pred ceeeeEEEEcCCcCchHHHHH-HHhcc--ccccccccCCCCceeeeeeeeccccceEEEeecCccccccccCcc--ceee
Confidence 355669999999999999997 78873 22222211111 2223344465532211110 01111111 2689
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe-EEEEecCCCCCHHH
Q psy5810 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVK-FVETSVGLVYKTDE 200 (250)
Q Consensus 122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~-~~evSa~~~~~I~~ 200 (250)
+++++||++++.||+.+...++.. .....+|+++|++|+|+++..+...-+..+++.+++++ -+..|.++... .+
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~---~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~ 573 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKY---FDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NE 573 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHh---hhccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-ch
Confidence 999999999999999987765543 23378999999999999875544444448899999987 67778775334 89
Q ss_pred HHHHHHHHHHhhh
Q psy5810 201 LLVGIARQAGLNK 213 (250)
Q Consensus 201 lf~~l~~~i~~~~ 213 (250)
+|..|+..+.-.+
T Consensus 574 lf~kL~~~A~~Ph 586 (625)
T KOG1707|consen 574 LFIKLATMAQYPH 586 (625)
T ss_pred HHHHHHHhhhCCC
Confidence 9999998877655
No 267
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.07 E-value=2.9e-09 Score=93.05 Aligned_cols=107 Identities=16% Similarity=0.121 Sum_probs=62.7
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
++.+.||+|.-+.... ... .||.+++|.+....+....+. ..+. ++.-++|.||+|+...
T Consensus 150 d~viieT~Gv~qs~~~-i~~----------~aD~vlvv~~p~~gd~iq~~k---~gi~------E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 150 DVILVETVGVGQSETA-VAG----------MVDFFLLLQLPGAGDELQGIK---KGIM------ELADLIVINKADGDNK 209 (332)
T ss_pred CEEEEECCCCccchhH-HHH----------hCCEEEEEecCCchHHHHHHH---hhhh------hhhheEEeehhcccch
Confidence 5567788885422222 122 589999997644444433322 2222 2234799999998542
Q ss_pred Ccc--CHHHHHHHHHH-------hCCeEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 169 RQV--THSDGKKLAYA-------WGVKFVETSVGLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 169 ~~v--~~~~~~~~~~~-------~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
... ...+....... +..+++.+||+++.||+++++.+.+.+....+.
T Consensus 210 ~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l~~s 265 (332)
T PRK09435 210 TAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAALTAS 265 (332)
T ss_pred hHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhccC
Confidence 211 11112211111 224799999999999999999999876543333
No 268
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4.5e-09 Score=95.07 Aligned_cols=137 Identities=18% Similarity=0.187 Sum_probs=91.2
Q ss_pred EEEEEcCCCCchhhhchhhhccc------cccccccccCc--------eeEEEEEeCCCCc--cccCCCccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQ------VENFVQTYHPD--------VFFIVYSDTNHTQ--RCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~------~~~~~~~~~~~--------~~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~ 116 (250)
-|.++|.-.-|||||+- .+-.. .......+|.+ ...+.+.||||.+ ..+...-..
T Consensus 7 vVtimGHVDHGKTtLLD-~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~-------- 77 (509)
T COG0532 7 VVTIMGHVDHGKTTLLD-KIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGAS-------- 77 (509)
T ss_pred EEEEeCcccCCccchhh-hHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCc--------
Confidence 38999999999999996 54442 11112222221 2367789999986 333333333
Q ss_pred cCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-------HhC--
Q psy5810 117 TYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-------AWG-- 184 (250)
Q Consensus 117 ~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-------~~~-- 184 (250)
=+|++|||.|++| |++.+.+.. ....++|++++.||+|.++. .++....-.. .|+
T Consensus 78 --vtDIaILVVa~dDGv~pQTiEAI~h--------ak~a~vP~iVAiNKiDk~~~---np~~v~~el~~~gl~~E~~gg~ 144 (509)
T COG0532 78 --VTDIAILVVAADDGVMPQTIEAINH--------AKAAGVPIVVAINKIDKPEA---NPDKVKQELQEYGLVPEEWGGD 144 (509)
T ss_pred --cccEEEEEEEccCCcchhHHHHHHH--------HHHCCCCEEEEEecccCCCC---CHHHHHHHHHHcCCCHhhcCCc
Confidence 5899999999998 456555431 12268999999999998642 2333333222 332
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 185 VKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 185 ~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
..++++||++|+|+.+|+..+.-....
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill~aev 171 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILLLAEV 171 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999988865443
No 269
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.05 E-value=2.4e-09 Score=105.25 Aligned_cols=101 Identities=22% Similarity=0.211 Sum_probs=66.4
Q ss_pred EEEEeCCCCcc--ccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810 90 IVYSDTNHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 164 (250)
Q Consensus 90 i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~D 164 (250)
+.+|||||++. .+....+. .+|++++|+|+++ +++++.+.. +.. .++|+++|+||+|
T Consensus 528 i~fiDTPGhe~F~~lr~~g~~----------~aDivlLVVDa~~Gi~~qT~e~I~~----lk~----~~iPiIVViNKiD 589 (1049)
T PRK14845 528 LLFIDTPGHEAFTSLRKRGGS----------LADLAVLVVDINEGFKPQTIEAINI----LRQ----YKTPFVVAANKID 589 (1049)
T ss_pred EEEEECCCcHHHHHHHHhhcc----------cCCEEEEEEECcccCCHhHHHHHHH----HHH----cCCCEEEEEECCC
Confidence 78999999863 33333334 7999999999997 566665542 211 3689999999999
Q ss_pred ccCCCccCH----------------HHHH----H----HH------------HHh--CCeEEEEecCCCCCHHHHHHHHH
Q psy5810 165 LERRRQVTH----------------SDGK----K----LA------------YAW--GVKFVETSVGLVYKTDELLVGIA 206 (250)
Q Consensus 165 l~~~~~v~~----------------~~~~----~----~~------------~~~--~~~~~evSa~~~~~I~~lf~~l~ 206 (250)
+......+. .+.. + ++ +++ .++++++||++|+||.+++..+.
T Consensus 590 L~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~ 669 (1049)
T PRK14845 590 LIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVA 669 (1049)
T ss_pred CccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHH
Confidence 853221110 1110 0 11 111 35789999999999999998776
Q ss_pred HH
Q psy5810 207 RQ 208 (250)
Q Consensus 207 ~~ 208 (250)
..
T Consensus 670 ~l 671 (1049)
T PRK14845 670 GL 671 (1049)
T ss_pred Hh
Confidence 43
No 270
>PRK00049 elongation factor Tu; Reviewed
Probab=99.04 E-value=2.6e-09 Score=96.08 Aligned_cols=137 Identities=12% Similarity=0.092 Sum_probs=80.1
Q ss_pred cccccEEEEEEEcCCCCchhhhchhhhccccc-----c---c--------cccccCce-----------eEEEEEeCCCC
Q psy5810 46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVE-----N---F--------VQTYHPDV-----------FFIVYSDTNHT 98 (250)
Q Consensus 46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-----~---~--------~~~~~~~~-----------~~i~i~Dt~g~ 98 (250)
.+....++|+++|..++|||||++ +++.... . + ...-+.++ ..+.+.||||.
T Consensus 7 ~~~~~~~ni~iiGhvd~GKSTL~~-~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~ 85 (396)
T PRK00049 7 ERTKPHVNVGTIGHVDHGKTTLTA-AITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGH 85 (396)
T ss_pred cCCCCEEEEEEEeECCCCHHHHHH-HHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCH
Confidence 345566889999999999999998 6765200 0 0 00111111 15678899997
Q ss_pred ccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEE-EEeeCCCccCCCcc---CHH
Q psy5810 99 QRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQV---THS 174 (250)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v---~~~ 174 (250)
... ...+. ..+..+|++++|.|..+...-+ ..+++..+.. .++|.+ ++.||+|+.+.... -..
T Consensus 86 ~~f-----~~~~~---~~~~~aD~~llVVDa~~g~~~q-t~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~ 152 (396)
T PRK00049 86 ADY-----VKNMI---TGAAQMDGAILVVSAADGPMPQ-TREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEM 152 (396)
T ss_pred HHH-----HHHHH---hhhccCCEEEEEEECCCCCchH-HHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHH
Confidence 421 11111 1122799999999998753222 2233333322 357865 68999998532111 112
Q ss_pred HHHHHHHHh-----CCeEEEEecCCCC
Q psy5810 175 DGKKLAYAW-----GVKFVETSVGLVY 196 (250)
Q Consensus 175 ~~~~~~~~~-----~~~~~evSa~~~~ 196 (250)
+...+.... +++++.+||+++.
T Consensus 153 ~i~~~l~~~~~~~~~~~iv~iSa~~g~ 179 (396)
T PRK00049 153 EVRELLSKYDFPGDDTPIIRGSALKAL 179 (396)
T ss_pred HHHHHHHhcCCCccCCcEEEeeccccc
Confidence 333344433 3579999999875
No 271
>PLN03127 Elongation factor Tu; Provisional
Probab=99.04 E-value=2.6e-09 Score=97.33 Aligned_cols=151 Identities=12% Similarity=0.072 Sum_probs=86.4
Q ss_pred ccccccEEEEEEEcCCCCchhhhchhhhccc-----cc-c--c--------cccccCcee-----------EEEEEeCCC
Q psy5810 45 FVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQ-----VE-N--F--------VQTYHPDVF-----------FIVYSDTNH 97 (250)
Q Consensus 45 ~~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~-----~~-~--~--------~~~~~~~~~-----------~i~i~Dt~g 97 (250)
+..+..+++|+++|..++|||||++ ++.+. .. . + ...-|.|++ .+.+.||||
T Consensus 55 ~~~~k~~~ni~iiGhvd~GKSTL~~-~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPG 133 (447)
T PLN03127 55 FTRTKPHVNVGTIGHVDHGKTTLTA-AITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPG 133 (447)
T ss_pred hhcCCceEEEEEECcCCCCHHHHHH-HHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCC
Confidence 3445577889999999999999998 77521 00 0 0 001122221 567899999
Q ss_pred CccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCccC---H
Q psy5810 98 TQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVT---H 173 (250)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~v~---~ 173 (250)
..+ |+..+.... ..+|++++|.|.++...-+ ..+.+..+.. .++| +|++.||+|+.+..... .
T Consensus 134 h~~-----f~~~~~~g~---~~aD~allVVda~~g~~~q-t~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~ 200 (447)
T PLN03127 134 HAD-----YVKNMITGA---AQMDGGILVVSAPDGPMPQ-TKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVE 200 (447)
T ss_pred ccc-----hHHHHHHHH---hhCCEEEEEEECCCCCchh-HHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHH
Confidence 753 222222211 2699999999997643222 1222232322 3678 57889999985422211 1
Q ss_pred HHHHHHHHHh-----CCeEEEEecC---CCCC-------HHHHHHHHHHHH
Q psy5810 174 SDGKKLAYAW-----GVKFVETSVG---LVYK-------TDELLVGIARQA 209 (250)
Q Consensus 174 ~~~~~~~~~~-----~~~~~evSa~---~~~~-------I~~lf~~l~~~i 209 (250)
++..++.... .++++.+||. +|.| +.++++.+...+
T Consensus 201 ~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l 251 (447)
T PLN03127 201 MELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI 251 (447)
T ss_pred HHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence 1222333332 3578888876 4544 566666666544
No 272
>KOG0705|consensus
Probab=99.00 E-value=1.4e-09 Score=98.07 Aligned_cols=160 Identities=13% Similarity=0.153 Sum_probs=114.0
Q ss_pred ccccccEEEEEEEcCCCCchhhhchhhhccc-cccccccccCceeEEEEEeCCCCc------c-ccCCCccccccccccc
Q psy5810 45 FVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVFFIVYSDTNHTQ------R-CLTPMPFCSQVENFVQ 116 (250)
Q Consensus 45 ~~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~~i~i~Dt~g~~------~-~~~~~~~~~~~~~~~~ 116 (250)
.....-.+|+.|+|+.++|||+|++ +|+.+ ...-..+.+..+.+..+.|-..+. . .....|-.
T Consensus 24 lsrsipelk~givg~~~sgktalvh-r~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~~aQft~-------- 94 (749)
T KOG0705|consen 24 LSRSIPELKLGIVGTSQSGKTALVH-RYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHPDAQFCQ-------- 94 (749)
T ss_pred eecccchhheeeeecccCCceeeee-eeccceeccccCCcCccceeeEEeeccceEeeeecccCCchhhhhh--------
Confidence 3445567889999999999999998 67662 223334444444444444422111 0 11222333
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc--CCCccCHHHHHHHHHHh-CCeEEEEecC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE--RRRQVTHSDGKKLAYAW-GVKFVETSVG 193 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~evSa~ 193 (250)
++|++||||.+.+.++|+.+......+..+.....+|+++++++.-.. ..+.+...++.+++.++ .+.||++++.
T Consensus 95 --wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~at 172 (749)
T KOG0705|consen 95 --WVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCAT 172 (749)
T ss_pred --hccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchh
Confidence 799999999999999999999888888766667789999999986653 34556666666665444 5779999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhh
Q psy5810 194 LVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
+|.++..+|+.+..++...++.
T Consensus 173 yGlnv~rvf~~~~~k~i~~~~~ 194 (749)
T KOG0705|consen 173 YGLNVERVFQEVAQKIVQLRKY 194 (749)
T ss_pred hhhhHHHHHHHHHHHHHHHHhh
Confidence 9999999999999887765433
No 273
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=98.99 E-value=2.8e-09 Score=102.31 Aligned_cols=126 Identities=10% Similarity=-0.075 Sum_probs=75.8
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccc------ccc------------cccCcee-----------EEEEEeCCCCcccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVEN------FVQ------------TYHPDVF-----------FIVYSDTNHTQRCL 102 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~------~~~------------~~~~~~~-----------~i~i~Dt~g~~~~~ 102 (250)
-+|+|+|..++|||||++ +++..... ... .-+.++. .+.+|||+|.....
T Consensus 11 rni~iiG~~~~GKsTL~~-~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~~~~ 89 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTE-RILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHVDFT 89 (689)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCcchh
Confidence 359999999999999999 77532111 000 1122221 67899999986322
Q ss_pred --CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH
Q psy5810 103 --TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180 (250)
Q Consensus 103 --~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 180 (250)
+...+. .+|++++|+|.++....+....| ..+.+ .++|+++++||+|+.... . ......+.
T Consensus 90 ~~~~~~l~----------~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~~~-~-~~~~~~i~ 152 (689)
T TIGR00484 90 VEVERSLR----------VLDGAVAVLDAVGGVQPQSETVW-RQANR----YEVPRIAFVNKMDKTGAN-F-LRVVNQIK 152 (689)
T ss_pred HHHHHHHH----------HhCEEEEEEeCCCCCChhHHHHH-HHHHH----cCCCEEEEEECCCCCCCC-H-HHHHHHHH
Confidence 122233 79999999999886555443333 33322 468999999999986422 1 12223333
Q ss_pred HHhCC---e-EEEEecCCC
Q psy5810 181 YAWGV---K-FVETSVGLV 195 (250)
Q Consensus 181 ~~~~~---~-~~evSa~~~ 195 (250)
..++. + .+.+|+..+
T Consensus 153 ~~l~~~~~~~~ipis~~~~ 171 (689)
T TIGR00484 153 QRLGANAVPIQLPIGAEDN 171 (689)
T ss_pred HHhCCCceeEEeccccCCC
Confidence 43332 2 456666655
No 274
>KOG3905|consensus
Probab=98.96 E-value=1.2e-08 Score=87.11 Aligned_cols=151 Identities=13% Similarity=0.073 Sum_probs=96.5
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccccCcee-------------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~ 118 (250)
|+++|+.++||||||. ++.+.. ..-..-+..+. ++.+|-.-|.. ..+....+. +.-.
T Consensus 55 VlvlGdn~sGKtsLi~-klqg~e-~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~---ats~--- 126 (473)
T KOG3905|consen 55 VLVLGDNGSGKTSLIS-KLQGSE-TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALP---ATSL--- 126 (473)
T ss_pred EEEEccCCCchhHHHH-Hhhccc-ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhccc---ccCc---
Confidence 9999999999999996 777631 11111111111 33455555542 111111000 0000
Q ss_pred CCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhC-----------------------------------------------
Q psy5810 119 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKY----------------------------------------------- 150 (250)
Q Consensus 119 ~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~----------------------------------------------- 150 (250)
.-..+||+.|+++|. -++.++.|..-+.++..
T Consensus 127 aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de 206 (473)
T KOG3905|consen 127 AETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADE 206 (473)
T ss_pred cceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccc
Confidence 125678999999995 45667778765543221
Q ss_pred -------------CCCCcEEEEeeCCCcc----CCCc-------cCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHH
Q psy5810 151 -------------IGEKAVILVANKADLE----RRRQ-------VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIA 206 (250)
Q Consensus 151 -------------~~~~piilv~nK~Dl~----~~~~-------v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~ 206 (250)
.-.+|++||.+|||.. .+.. .-....++||..+|...+.+|++...||+-+..+|+
T Consensus 207 ~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYiv 286 (473)
T KOG3905|consen 207 HVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIV 286 (473)
T ss_pred ccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHH
Confidence 0138999999999982 1111 123457889999999999999999999999999999
Q ss_pred HHHHhh
Q psy5810 207 RQAGLN 212 (250)
Q Consensus 207 ~~i~~~ 212 (250)
..++.-
T Consensus 287 hr~yG~ 292 (473)
T KOG3905|consen 287 HRSYGF 292 (473)
T ss_pred HHhcCc
Confidence 887653
No 275
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.94 E-value=3.6e-09 Score=91.03 Aligned_cols=117 Identities=12% Similarity=0.081 Sum_probs=64.8
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccc----cccc-cccCce-------eEEEEEeCCCCcccc-CCCccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVE----NFVQ-TYHPDV-------FFIVYSDTNHTQRCL-TPMPFCSQVENF 114 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~----~~~~-~~~~~~-------~~i~i~Dt~g~~~~~-~~~~~~~~~~~~ 114 (250)
....++|+++|.+||||||++| ++.+... .+.+ ++.++. ..+.+|||+|..... ...........+
T Consensus 35 ~~~~~rIllvGktGVGKSSliN-sIlG~~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~ 113 (313)
T TIGR00991 35 DVSSLTILVMGKGGVGKSSTVN-SIIGERIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQAVNIIKRF 113 (313)
T ss_pred cccceEEEEECCCCCCHHHHHH-HHhCCCcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHHHHHHHHHH
Confidence 3456779999999999999999 7776422 1111 111111 178899999976321 001111111222
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCC-CCCcEEEEeeCCCcc
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYI-GEKAVILVANKADLE 166 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~-~~~piilv~nK~Dl~ 166 (250)
....+.|++++|.+++... +... ...++.+....+. .-.++|++.|+.|..
T Consensus 114 l~~~g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 114 LLGKTIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred hhcCCCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 2223689999996654321 2111 2233334332211 134689999999964
No 276
>PRK12740 elongation factor G; Reviewed
Probab=98.93 E-value=4.6e-09 Score=100.63 Aligned_cols=94 Identities=13% Similarity=-0.032 Sum_probs=61.1
Q ss_pred EcCCCCchhhhchhhhccccccc------------c------ccccCcee-----------EEEEEeCCCCcc--ccCCC
Q psy5810 57 HSDTNHTQRCLTSMPFCSQVENF------------V------QTYHPDVF-----------FIVYSDTNHTQR--CLTPM 105 (250)
Q Consensus 57 iG~~~vGKSsLi~~~~~~~~~~~------------~------~~~~~~~~-----------~i~i~Dt~g~~~--~~~~~ 105 (250)
+|..++|||||++ +++...... . ..-+.++. .+.+|||+|... ..+..
T Consensus 1 ig~~~~GKTTL~~-~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~ 79 (668)
T PRK12740 1 VGHSGAGKTTLTE-AILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVER 79 (668)
T ss_pred CCCCCCcHHHHHH-HHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 6999999999998 674321110 0 01122221 678899999853 22222
Q ss_pred ccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 106 PFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 106 ~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
.+. .+|++++|+|.++.........|. .+.. .++|+++|+||+|+.
T Consensus 80 ~l~----------~aD~vllvvd~~~~~~~~~~~~~~-~~~~----~~~p~iiv~NK~D~~ 125 (668)
T PRK12740 80 ALR----------VLDGAVVVVCAVGGVEPQTETVWR-QAEK----YGVPRIIFVNKMDRA 125 (668)
T ss_pred HHH----------HhCeEEEEEeCCCCcCHHHHHHHH-HHHH----cCCCEEEEEECCCCC
Confidence 333 799999999999876665544443 2322 478999999999984
No 277
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.92 E-value=6.6e-09 Score=90.13 Aligned_cols=83 Identities=29% Similarity=0.207 Sum_probs=50.2
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCH--H----HHHHHHH---HhCCeEEE
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH--S----DGKKLAY---AWGVKFVE 189 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--~----~~~~~~~---~~~~~~~e 189 (250)
.+|.++++-+. .+-+++......+ .+.|.++|.||+|+........ . ....+.. .+..++++
T Consensus 147 ~aD~i~vv~~~---~~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~ 217 (300)
T TIGR00750 147 MADTFVVVTIP---GTGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLT 217 (300)
T ss_pred hhceEEEEecC---CccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEE
Confidence 46777777433 3334444433333 3567899999999864221110 0 0011111 12235899
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy5810 190 TSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~ 210 (250)
+||+++.|++++++++.+...
T Consensus 218 iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 218 TSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred EEccCCCCHHHHHHHHHHHHH
Confidence 999999999999999998644
No 278
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.90 E-value=1.1e-08 Score=93.29 Aligned_cols=140 Identities=14% Similarity=0.125 Sum_probs=80.0
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcccccccc-------------------------------ccccCce---------
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-------------------------------QTYHPDV--------- 87 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-------------------------------~~~~~~~--------- 87 (250)
+...+.|+++|..++|||||+. +++...+... ..-+.++
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~-~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~ 82 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTG-HLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET 82 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHH-HHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc
Confidence 4456789999999999999998 5544211000 0011111
Q ss_pred --eEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH---hH---HHHHHHHHHHHhhhCCCCCc-EEE
Q psy5810 88 --FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK---TF---KKAEDMLKTLWDSKYIGEKA-VIL 158 (250)
Q Consensus 88 --~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~---Sf---~~~~~~~~~i~~~~~~~~~p-iil 158 (250)
..+.+.||||..+.+..+ .. .+..+|++++|.|.+... .| ....+-+..+.. ..+| +|+
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~-----~~---g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv 150 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNM-----IT---GTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIV 150 (446)
T ss_pred CCeEEEEEECCChHHHHHHH-----HH---hhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEE
Confidence 156789999975322111 11 112799999999998642 11 112221122211 3666 778
Q ss_pred EeeCCCccC--CCc--c--CHHHHHHHHHHhC-----CeEEEEecCCCCCHHH
Q psy5810 159 VANKADLER--RRQ--V--THSDGKKLAYAWG-----VKFVETSVGLVYKTDE 200 (250)
Q Consensus 159 v~nK~Dl~~--~~~--v--~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~ 200 (250)
+.||+|... ... . ..++...+....+ ++++++||.+|.|+.+
T Consensus 151 ~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 151 CINKMDDKTVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred EEEccccccchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 999999532 000 0 1223333444333 5699999999999864
No 279
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.88 E-value=4.4e-09 Score=97.58 Aligned_cols=101 Identities=11% Similarity=0.143 Sum_probs=62.4
Q ss_pred EEEEEEEcCCCCchhhhchhhhcc--c-ccc---cc----------------ccccCce-----------eEEEEEeCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCS--Q-VEN---FV----------------QTYHPDV-----------FFIVYSDTNH 97 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~--~-~~~---~~----------------~~~~~~~-----------~~i~i~Dt~g 97 (250)
..+|+|+|..++|||||++ +++. + ... .. ...+.++ ..+.+|||+|
T Consensus 11 ~RniaiiGh~~aGKTTL~e-~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTPG 89 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITE-KVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTPG 89 (527)
T ss_pred CCEEEEEcCCCCCHHHHHH-HHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECCC
Confidence 3459999999999999998 6532 1 000 00 0011111 1677899999
Q ss_pred Ccccc--CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 98 TQRCL--TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 98 ~~~~~--~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
+.... ....+. .+|++|+|+|.++... .....++... + ..++|+++++||+|+..
T Consensus 90 ~~df~~~~~~~l~----------~aD~aIlVvDa~~gv~-~~t~~l~~~~-~---~~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 90 HEDFSEDTYRTLT----------AVDNCLMVIDAAKGVE-TRTRKLMEVT-R---LRDTPIFTFMNKLDRDI 146 (527)
T ss_pred hhhHHHHHHHHHH----------hCCEEEEEEECCCCCC-HHHHHHHHHH-H---hcCCCEEEEEECccccC
Confidence 85211 122233 7999999999987421 1223333333 2 25789999999999854
No 280
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.86 E-value=5.5e-09 Score=84.55 Aligned_cols=111 Identities=19% Similarity=0.197 Sum_probs=72.0
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCC---eEEEE
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGV---KFVET 190 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~---~~~ev 190 (250)
++|++++|+|++++.. .|...+.. ...+.|+++|+||+|+... ....++...+. +..+. .++++
T Consensus 34 ~ad~il~VvD~~~~~~-----~~~~~l~~--~~~~~~~ilV~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~v 105 (190)
T cd01855 34 KKALVVHVVDIFDFPG-----SLIPRLRL--FGGNNPVILVGNKIDLLPK-DKNLVRIKNWLRAKAAAGLGLKPKDVILI 105 (190)
T ss_pred CCcEEEEEEECccCCC-----ccchhHHH--hcCCCcEEEEEEchhcCCC-CCCHHHHHHHHHHHHHhhcCCCcccEEEE
Confidence 8999999999988541 23333322 1256899999999998542 23334444443 23333 58999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810 191 SVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (250)
||+++.|+++++..+...+... .....-.....+.+++++.+.+...
T Consensus 106 SA~~~~gi~eL~~~l~~~l~~~-~~~~~~G~~nvGKStliN~l~~~~~ 152 (190)
T cd01855 106 SAKKGWGVEELINAIKKLAKKG-GDVYVVGATNVGKSTLINALLKKDN 152 (190)
T ss_pred ECCCCCCHHHHHHHHHHHhhcC-CcEEEEcCCCCCHHHHHHHHHHhcc
Confidence 9999999999999998876421 1111112222467788888887653
No 281
>PRK12739 elongation factor G; Reviewed
Probab=98.86 E-value=1.9e-08 Score=96.64 Aligned_cols=103 Identities=13% Similarity=-0.043 Sum_probs=63.8
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccc---cc---c------------ccccCce-----------eEEEEEeCCCCcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE---NF---V------------QTYHPDV-----------FFIVYSDTNHTQR 100 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~---~~---~------------~~~~~~~-----------~~i~i~Dt~g~~~ 100 (250)
+..+|+|+|..++|||||++ +++.... .. . ..-+.++ ..+.++||+|...
T Consensus 7 ~irni~iiGh~~~GKsTL~~-~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~~ 85 (691)
T PRK12739 7 KTRNIGIMAHIDAGKTTTTE-RILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHVD 85 (691)
T ss_pred CeeEEEEECCCCCCHHHHHH-HHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHHH
Confidence 44569999999999999999 6653211 10 0 0111111 1677899999753
Q ss_pred ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 101 CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
... +...+++.+|++++|+|..+...-+.. ..+..+.+ .++|++++.||+|+.
T Consensus 86 f~~--------e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~~~p~iv~iNK~D~~ 138 (691)
T PRK12739 86 FTI--------EVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----YGVPRIVFVNKMDRI 138 (691)
T ss_pred HHH--------HHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCCC
Confidence 111 122222379999999999876433322 22222322 468999999999985
No 282
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.85 E-value=7.7e-09 Score=87.23 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=63.9
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCccccCCCc----cccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRCLTPMP----FCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~~~~~~----~~~~~~ 112 (250)
...++|+++|.+|||||||+| .+.+........+.+.. ..+.+|||+|-.......+ ....+.
T Consensus 29 ~~~~~IllvG~tGvGKSSliN-aLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTIN-SIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHH-HHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 345779999999999999999 77774221111111111 1578999999652211010 111122
Q ss_pred cccccCCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCC-CCCcEEEEeeCCCcc
Q psy5810 113 NFVQTYHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYI-GEKAVILVANKADLE 166 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~ 166 (250)
.+.+....|++++|..++.. .++.+ ...++.+....+. --.++++|.||+|..
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d-~~llk~I~e~fG~~i~~~~ivV~T~~d~~ 162 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLD-LPLLRAITDSFGPSIWRNAIVVLTHAASS 162 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHH-HHHHHHHHHHhChhhHhCEEEEEeCCccC
Confidence 23333367888888766543 22222 1233333322211 124699999999973
No 283
>KOG1145|consensus
Probab=98.84 E-value=5.6e-08 Score=88.02 Aligned_cols=137 Identities=16% Similarity=0.116 Sum_probs=92.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-------------ccccccccCceeEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-------------ENFVQTYHPDVFFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-------------~~~~~~~~~~~~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+..-|-|+|.-.-||||||- .|-+.. +-|.-+.. .-..+.+.||||.. ..+...-..
T Consensus 152 RpPVVTiMGHVDHGKTTLLD-~lRks~VAA~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHaAF~aMRaRGA~------ 223 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLD-ALRKSSVAAGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHAAFSAMRARGAN------ 223 (683)
T ss_pred CCCeEEEeecccCChhhHHH-HHhhCceehhhcCCccceeceEEEecC-CCCEEEEecCCcHHHHHHHHhccCc------
Confidence 34449999999999999997 665531 11111111 11378889999974 333333333
Q ss_pred cccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-------HHhC
Q psy5810 115 VQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-------YAWG 184 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-------~~~~ 184 (250)
-+|+++||...+| +++.+.+. +....++|+|+..||+|.++. +++.+.+-. +++|
T Consensus 224 ----vtDIvVLVVAadDGVmpQT~EaIk--------hAk~A~VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~G 288 (683)
T KOG1145|consen 224 ----VTDIVVLVVAADDGVMPQTLEAIK--------HAKSANVPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLG 288 (683)
T ss_pred ----cccEEEEEEEccCCccHhHHHHHH--------HHHhcCCCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcC
Confidence 6899999999988 45555543 333478999999999997642 334443332 3343
Q ss_pred --CeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 185 --VKFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 185 --~~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
...+++||++|.|++.|-+.++-++
T Consensus 289 GdVQvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 289 GDVQVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred CceeEEEeecccCCChHHHHHHHHHHH
Confidence 3589999999999999988887544
No 284
>PRK12288 GTPase RsgA; Reviewed
Probab=98.84 E-value=7.9e-09 Score=91.13 Aligned_cols=110 Identities=16% Similarity=0.090 Sum_probs=80.0
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc-CHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV-THSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
++|.+++|++++...+|..+..|+..+. ..++|+++|+||+|+...... ...+.....+..+++++++||+++.|
T Consensus 120 NvD~vlIV~s~~p~~s~~~Ldr~L~~a~----~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~G 195 (347)
T PRK12288 120 NIDQIVIVSAVLPELSLNIIDRYLVACE----TLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEG 195 (347)
T ss_pred EccEEEEEEeCCCCCCHHHHHHHHHHHH----hcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcC
Confidence 7999999999998899999999987553 257899999999999542211 11222333456788999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810 198 TDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 198 I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (250)
+++++..+...+. -.-..+....++++|.+.++..
T Consensus 196 ideL~~~L~~ki~------~~vG~sgVGKSTLiN~Ll~~~~ 230 (347)
T PRK12288 196 LEELEAALTGRIS------IFVGQSGVGKSSLINALLPEAE 230 (347)
T ss_pred HHHHHHHHhhCCE------EEECCCCCCHHHHHHHhccccc
Confidence 9999998875431 1222333567778888776654
No 285
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=98.84 E-value=8.9e-08 Score=87.34 Aligned_cols=152 Identities=15% Similarity=0.093 Sum_probs=94.8
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccccCcee-------------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-------------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~ 118 (250)
|+|+|+.++||||||. +|.+. +....+.+..+. ++-+|-..|.. ..+...... .+..
T Consensus 28 vlvlG~~~~GKttli~-~L~~~-e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt--~~~l---- 99 (472)
T PF05783_consen 28 VLVLGDKGSGKTTLIA-RLQGI-EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALT--PENL---- 99 (472)
T ss_pred EEEEeCCCCchHHHHH-Hhhcc-CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCC--cccc----
Confidence 9999999999999997 77653 222222222222 44566655532 111111111 0000
Q ss_pred CCcEEEEEEeCCCHHhH-HHHHHHHHHHHhhh------------------------------C----------------C
Q psy5810 119 HPDVFVIVYSVIERKTF-KKAEDMLKTLWDSK------------------------------Y----------------I 151 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf-~~~~~~~~~i~~~~------------------------------~----------------~ 151 (250)
.--.+|+|.|++.|..+ +.+..|+.-+..+. . .
T Consensus 100 ~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~ 179 (472)
T PF05783_consen 100 PNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDD 179 (472)
T ss_pred cceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccc
Confidence 24788899999999764 34455544332100 0 0
Q ss_pred ---------------CCCcEEEEeeCCCccC----CCc-------cCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHH
Q psy5810 152 ---------------GEKAVILVANKADLER----RRQ-------VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGI 205 (250)
Q Consensus 152 ---------------~~~piilv~nK~Dl~~----~~~-------v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l 205 (250)
-.+|++||++|+|... +.. .-....+.+|..+|+.++.+|++...+++.++.+|
T Consensus 180 ~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi 259 (472)
T PF05783_consen 180 ESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYI 259 (472)
T ss_pred ccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHH
Confidence 0279999999999621 111 11233677889999999999999999999999999
Q ss_pred HHHHHhhh
Q psy5810 206 ARQAGLNK 213 (250)
Q Consensus 206 ~~~i~~~~ 213 (250)
...+....
T Consensus 260 ~h~l~~~~ 267 (472)
T PF05783_consen 260 LHRLYGFP 267 (472)
T ss_pred HHHhccCC
Confidence 88876543
No 286
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.83 E-value=1.8e-08 Score=91.91 Aligned_cols=151 Identities=14% Similarity=0.173 Sum_probs=89.5
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhccccc---------------ccccc----------------ccCc---------
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVE---------------NFVQT----------------YHPD--------- 86 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~---------------~~~~~----------------~~~~--------- 86 (250)
..+-.+.|.++|.-..|||||+. .+.+... .|... +...
T Consensus 30 ~~~~~~~ig~~GHVDhGKTtLv~-aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (460)
T PTZ00327 30 SRQATINIGTIGHVAHGKSTVVK-ALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPG 108 (460)
T ss_pred cCCCcEEEEEEccCCCCHHHHHH-HHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccc
Confidence 34556779999999999999996 7765200 01000 0000
Q ss_pred -------eeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEE
Q psy5810 87 -------VFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVIL 158 (250)
Q Consensus 87 -------~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piil 158 (250)
...+.+.|+||.+..+..+ ... +..+|++++|.|.++. ..-+. .+.+..+ ... .-.++|+
T Consensus 109 ~~~~~~~~~~i~~IDtPGH~~fi~~m-----~~g---~~~~D~alLVVda~~g~~~~qT-~ehl~i~-~~l--gi~~iIV 176 (460)
T PTZ00327 109 CGHKMTLKRHVSFVDCPGHDILMATM-----LNG---AAVMDAALLLIAANESCPQPQT-SEHLAAV-EIM--KLKHIII 176 (460)
T ss_pred ccccccccceEeeeeCCCHHHHHHHH-----HHH---HhhCCEEEEEEECCCCccchhh-HHHHHHH-HHc--CCCcEEE
Confidence 1256789999975322111 111 1268999999999874 12111 1222212 111 2246899
Q ss_pred EeeCCCccCCCcc--CHHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 159 VANKADLERRRQV--THSDGKKLAYA---WGVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 159 v~nK~Dl~~~~~v--~~~~~~~~~~~---~~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+.||+|+.+...+ ..++...+.+. .+.+++++||++|.|+++|++.|...+.
T Consensus 177 vlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp 233 (460)
T PTZ00327 177 LQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP 233 (460)
T ss_pred EEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence 9999998532111 11223333322 2568999999999999999999887554
No 287
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.83 E-value=1.9e-09 Score=90.36 Aligned_cols=117 Identities=21% Similarity=0.137 Sum_probs=53.8
Q ss_pred EEEEEeCCCCccccCCC-ccccccccccccCCCcEEEEEEeCC---CHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810 89 FIVYSDTNHTQRCLTPM-PFCSQVENFVQTYHPDVFVIVYSVI---ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 164 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~-~~~~~~~~~~~~~~ad~iilV~D~~---~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~D 164 (250)
...++|||||.+-.... ......+...+ ...-+++++.|.. ++.+|-.. ++-.+... ..-+.|.|.|.||+|
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~-~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~-~~~~lP~vnvlsK~D 167 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQK-NGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIM-LRLELPHVNVLSKID 167 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS-----EEEEEE-GGG-SSHHHHHHH--HHHHHHHH-HHHTSEEEEEE--GG
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhh-hcceEEEEEEecccccChhhHHHH--HHHHHHHH-hhCCCCEEEeeeccC
Confidence 46689999995221111 11101111111 1457888999965 44555332 22221110 114799999999999
Q ss_pred ccCCC---cc----C------------HHHHHHHH---HHhC-C-eEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 165 LERRR---QV----T------------HSDGKKLA---YAWG-V-KFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 165 l~~~~---~v----~------------~~~~~~~~---~~~~-~-~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
+.+.. .+ . ..-..+++ .+++ . .++.+|+.+++++.+++..+-+.+
T Consensus 168 l~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 168 LLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp GS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 85411 00 0 00011112 1223 3 599999999999999998887643
No 288
>PTZ00258 GTP-binding protein; Provisional
Probab=98.82 E-value=3.5e-08 Score=87.94 Aligned_cols=78 Identities=10% Similarity=-0.031 Sum_probs=47.3
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccccccc----ccccCcee------------------------EEEEEeCCCCcc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVF------------------------FIVYSDTNHTQR 100 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~------------------------~i~i~Dt~g~~~ 100 (250)
...++|+|+|.||||||||+| .+.+...... .|..+..+ .+++.||||-..
T Consensus 19 ~~~~kvgIVG~PNvGKSTLfn-aLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 19 GNNLKMGIVGLPNVGKSTTFN-ALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCcEEEEECCCCCChHHHHH-HHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 455789999999999999999 7876422111 12222222 378899999652
Q ss_pred ccCCCcccccccc-ccccCCCcEEEEEEeC
Q psy5810 101 CLTPMPFCSQVEN-FVQTYHPDVFVIVYSV 129 (250)
Q Consensus 101 ~~~~~~~~~~~~~-~~~~~~ad~iilV~D~ 129 (250)
..... ..+-.. ...++++|++++|.|.
T Consensus 98 ga~~g--~gLg~~fL~~Ir~aD~il~VVd~ 125 (390)
T PTZ00258 98 GASEG--EGLGNAFLSHIRAVDGIYHVVRA 125 (390)
T ss_pred CCcch--hHHHHHHHHHHHHCCEEEEEEeC
Confidence 21111 000011 1122379999999997
No 289
>KOG0410|consensus
Probab=98.82 E-value=1.9e-09 Score=91.80 Aligned_cols=142 Identities=20% Similarity=0.174 Sum_probs=92.0
Q ss_pred EEEEcCCCCchhhhchhhhccc----cccccccccCcee--------EEEEEeCCCCccccCCCc---cccccccccccC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQ----VENFVQTYHPDVF--------FIVYSDTNHTQRCLTPMP---FCSQVENFVQTY 118 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~----~~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~~---~~~~~~~~~~~~ 118 (250)
|.++|.+|+|||||++ .+.+. .++...|.++|.. .+.+.||.|--..+.... |+...|+ ++
T Consensus 181 iavVGYTNaGKsTLik-aLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF~ATLee---Va 256 (410)
T KOG0410|consen 181 IAVVGYTNAGKSTLIK-ALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAFQATLEE---VA 256 (410)
T ss_pred EEEEeecCccHHHHHH-HHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhhhhCcHHHHHHHHHHHHH---Hh
Confidence 9999999999999998 78754 3444455666554 566789998543332222 2222222 23
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc----EEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA----VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p----iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
.+|.++.|.|+++|.--+.....+.-+.+. +.+..| ++=|=||.|..+.. +. .++++ -+.+||++
T Consensus 257 eadlllHvvDiShP~ae~q~e~Vl~vL~~i-gv~~~pkl~~mieVdnkiD~e~~~-~e-------~E~n~--~v~isalt 325 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQRETVLHVLNQI-GVPSEPKLQNMIEVDNKIDYEEDE-VE-------EEKNL--DVGISALT 325 (410)
T ss_pred hcceEEEEeecCCccHHHHHHHHHHHHHhc-CCCcHHHHhHHHhhcccccccccc-Cc-------cccCC--cccccccc
Confidence 799999999999997655555444444332 333334 45566788864321 11 12222 67899999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy5810 195 VYKTDELLVGIARQAG 210 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~ 210 (250)
|.|++++...+-..+.
T Consensus 326 gdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 326 GDGLEELLKAEETKVA 341 (410)
T ss_pred CccHHHHHHHHHHHhh
Confidence 9999999888776554
No 290
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.81 E-value=2e-08 Score=86.59 Aligned_cols=83 Identities=23% Similarity=0.095 Sum_probs=66.2
Q ss_pred CCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 119 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 119 ~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+.. .......+....+.+++++||+++.|
T Consensus 78 nvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~~g~g 151 (287)
T cd01854 78 NVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAKTGEG 151 (287)
T ss_pred eCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECCCCcc
Confidence 899999999999998 88899999887743 478999999999985431 11222334455788999999999999
Q ss_pred HHHHHHHHHH
Q psy5810 198 TDELLVGIAR 207 (250)
Q Consensus 198 I~~lf~~l~~ 207 (250)
+++++..+..
T Consensus 152 i~~L~~~L~~ 161 (287)
T cd01854 152 LDELREYLKG 161 (287)
T ss_pred HHHHHhhhcc
Confidence 9999988764
No 291
>PRK00098 GTPase RsgA; Reviewed
Probab=98.80 E-value=1.8e-08 Score=87.28 Aligned_cols=109 Identities=20% Similarity=0.096 Sum_probs=75.0
Q ss_pred CCCcEEEEEEeCCCHHhHHH-HHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 118 YHPDVFVIVYSVIERKTFKK-AEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
+++|++++|+|++++.++.. +..|+..+.. .++|+++|+||+|+.+... ...+..+..+..+++++++||+++.
T Consensus 79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~ 153 (298)
T PRK00098 79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGE 153 (298)
T ss_pred ecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 48999999999998876544 4778776643 5789999999999853221 1223344556678899999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccC
Q psy5810 197 KTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFK 237 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (250)
|+++++..+...+. -.-..+....+++++.+.+..
T Consensus 154 gi~~L~~~l~gk~~------~~~G~sgvGKStlin~l~~~~ 188 (298)
T PRK00098 154 GLDELKPLLAGKVT------VLAGQSGVGKSTLLNALAPDL 188 (298)
T ss_pred cHHHHHhhccCceE------EEECCCCCCHHHHHHHHhCCc
Confidence 99999988743221 111222245566666666544
No 292
>PRK12289 GTPase RsgA; Reviewed
Probab=98.77 E-value=3.4e-08 Score=87.24 Aligned_cols=109 Identities=17% Similarity=0.128 Sum_probs=76.4
Q ss_pred CCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 118 YHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
+++|.+++|+|+.++. ++..+..|+..+. ..++|+++|+||+|+...... .........+|++++++||+++.
T Consensus 88 aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~----~~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iSA~tg~ 161 (352)
T PRK12289 88 ANADQILLVFALAEPPLDPWQLSRFLVKAE----STGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFISVETGI 161 (352)
T ss_pred hcCCEEEEEEECCCCCCCHHHHHHHHHHHH----HCCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEEcCCCC
Confidence 3899999999999875 5556778877663 257999999999998532111 11222334678899999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810 197 KTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (250)
|+++++..+...+. -.-..+....++++|.+.+...
T Consensus 162 GI~eL~~~L~~ki~------v~iG~SgVGKSSLIN~L~~~~~ 197 (352)
T PRK12289 162 GLEALLEQLRNKIT------VVAGPSGVGKSSLINRLIPDVE 197 (352)
T ss_pred CHHHHhhhhccceE------EEEeCCCCCHHHHHHHHcCccc
Confidence 99999998875431 1222333456777777776543
No 293
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.77 E-value=5.1e-08 Score=86.12 Aligned_cols=152 Identities=15% Similarity=0.132 Sum_probs=77.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccc---------cccccccccCce------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQ---------VENFVQTYHPDV------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~---------~~~~~~~~~~~~------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+.|+|+|++|+||||||| .+.+- .+...+|..++. ..+.+||.||.- ..-...|+..+
T Consensus 34 ~~l~IaV~G~sGsGKSSfIN-alrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~~Yl~~~-- 110 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFIN-ALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPEEYLKEV-- 110 (376)
T ss_dssp --EEEEEEESTTSSHHHHHH-HHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HHHHHHHT--
T ss_pred CceEEEEECCCCCCHHHHHH-HHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHHHHHHHc--
Confidence 45679999999999999999 77552 111222222222 278899999963 11111122211
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHH-HHHHhhhCCCCCcEEEEeeCCCcc-------CCCccCHHHH----HHHH
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDML-KTLWDSKYIGEKAVILVANKADLE-------RRRQVTHSDG----KKLA 180 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~-~~i~~~~~~~~~piilv~nK~Dl~-------~~~~v~~~~~----~~~~ 180 (250)
....-|.+|++.+.. |....-|+ ..+.+ -+.|+.+|-+|.|.. ..+..+.++. ++.|
T Consensus 111 ---~~~~yD~fiii~s~r----f~~ndv~La~~i~~----~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c 179 (376)
T PF05049_consen 111 ---KFYRYDFFIIISSER----FTENDVQLAKEIQR----MGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENC 179 (376)
T ss_dssp ---TGGG-SEEEEEESSS------HHHHHHHHHHHH----TT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHH
T ss_pred ---cccccCEEEEEeCCC----CchhhHHHHHHHHH----cCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHH
Confidence 111579888877532 33333332 33433 478999999999961 1223443333 3333
Q ss_pred HH----hCC---eEEEEecCCC--CCHHHHHHHHHHHHHhhhhh
Q psy5810 181 YA----WGV---KFVETSVGLV--YKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 181 ~~----~~~---~~~evSa~~~--~~I~~lf~~l~~~i~~~~~~ 215 (250)
.+ .|+ ++|-+|+.+- .....+.+.|.+.+...+..
T Consensus 180 ~~~L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~Kr~ 223 (376)
T PF05049_consen 180 LENLQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHKRH 223 (376)
T ss_dssp HHHHHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGGHH
T ss_pred HHHHHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHHHH
Confidence 22 233 4888998874 45778888888777655443
No 294
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.74 E-value=3.7e-08 Score=81.97 Aligned_cols=129 Identities=10% Similarity=0.044 Sum_probs=72.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccc--cccccc------CceeEEEEEeCCCCccccCCCccccccccccccCCCcEE
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVEN--FVQTYH------PDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVF 123 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~--~~~~~~------~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~i 123 (250)
..|+++|.+|+|||||++ .+...... .....| .....+.+.||+|.... ..+. ++.+|++
T Consensus 40 ~~i~ivG~~~~GKstl~~-~l~~~~~~~~~~~~~g~i~i~~~~~~~i~~vDtPg~~~~--------~l~~---ak~aDvV 107 (225)
T cd01882 40 LVVAVVGPPGVGKTTLIK-SLVKNYTKQNISDIKGPITVVTGKKRRLTFIECPNDINA--------MIDI---AKVADLV 107 (225)
T ss_pred CEEEEECCCCCCHHHHHH-HHHhhcccCccccccccEEEEecCCceEEEEeCCchHHH--------HHHH---HHhcCEE
Confidence 459999999999999997 66653111 111111 11225677899875311 1111 1279999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCc-cC--HHHHHH-HHHHh--CCeEEEEecCCCC
Q psy5810 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQ-VT--HSDGKK-LAYAW--GVKFVETSVGLVY 196 (250)
Q Consensus 124 ilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~-v~--~~~~~~-~~~~~--~~~~~evSa~~~~ 196 (250)
++|+|.+....... ..++..+.. .+.| +++|.||.|+.+... .. .++... +..+. +.+++.+||++.-
T Consensus 108 llviDa~~~~~~~~-~~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~~~ 182 (225)
T cd01882 108 LLLIDASFGFEMET-FEFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIVHG 182 (225)
T ss_pred EEEEecCcCCCHHH-HHHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeeccCC
Confidence 99999986543322 122332322 3567 455999999853221 11 111211 22222 3569999999874
Q ss_pred C
Q psy5810 197 K 197 (250)
Q Consensus 197 ~ 197 (250)
.
T Consensus 183 ~ 183 (225)
T cd01882 183 R 183 (225)
T ss_pred C
Confidence 3
No 295
>KOG3886|consensus
Probab=98.72 E-value=3.1e-07 Score=75.05 Aligned_cols=142 Identities=15% Similarity=0.158 Sum_probs=81.4
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee------------EEEEEeCCCCcccc-------CCCccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF------------FIVYSDTNHTQRCL-------TPMPFCSQVE 112 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~------------~i~i~Dt~g~~~~~-------~~~~~~~~~~ 112 (250)
-||+++|.+|+||||+=.-.|.+....-..-.|.+++ .+.+||.+||+..+ ....++
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~~q~d~iF~---- 80 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLSSQEDNIFR---- 80 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHhhcchhhhe----
Confidence 3699999999999998542232221111223333332 45679999997222 233444
Q ss_pred cccccCCCcEEEEEEeCCCHHhHH---HHHHHHHHHHhhhCCCCCcEEEEeeCCCccC--CCccCHHH----HHHHHHHh
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFK---KAEDMLKTLWDSKYIGEKAVILVANKADLER--RRQVTHSD----GKKLAYAW 183 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~---~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~v~~~~----~~~~~~~~ 183 (250)
+.+++++|||++..+--. ..+.-++.+.++ .++..+....+|.|+.. .+.+...+ ...+....
T Consensus 81 ------nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~--SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~ 152 (295)
T KOG3886|consen 81 ------NVQVLIYVFDVESREMEKDFHYYQKCLEALLQN--SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPL 152 (295)
T ss_pred ------eheeeeeeeeccchhhhhhHHHHHHHHHHHHhc--CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccc
Confidence 899999999998875433 344455555543 46667888889999843 22222222 22223334
Q ss_pred CCeEEEEecCCCCCHHHHHHHHH
Q psy5810 184 GVKFVETSVGLVYKTDELLVGIA 206 (250)
Q Consensus 184 ~~~~~evSa~~~~~I~~lf~~l~ 206 (250)
++.++++|.-+ +++...+..+.
T Consensus 153 ~~~~f~TsiwD-etl~KAWS~iv 174 (295)
T KOG3886|consen 153 ECKCFPTSIWD-ETLYKAWSSIV 174 (295)
T ss_pred cccccccchhh-HHHHHHHHHHH
Confidence 55567766543 33333333333
No 296
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.72 E-value=1.8e-07 Score=74.74 Aligned_cols=55 Identities=27% Similarity=0.091 Sum_probs=43.5
Q ss_pred cEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 155 AVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 155 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
.=++|.||.|+.+.-..+.+...+-+++.+ .+++++|+++|+|+++++.|+....
T Consensus 144 aDllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 144 ADLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred eeEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 347889999997655556677776776664 6799999999999999999987643
No 297
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.72 E-value=9.4e-08 Score=81.76 Aligned_cols=56 Identities=18% Similarity=0.069 Sum_probs=39.9
Q ss_pred CCcEEEEeeCCCccCCCccCHHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 153 EKAVILVANKADLERRRQVTHSDGKKLAYAW--GVKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 153 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
..+-++|.||+|+........++..+..+.. +.+++++||++|+|++++.+||..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4567889999998542122233444444443 4679999999999999999999763
No 298
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.69 E-value=8.4e-08 Score=79.10 Aligned_cols=158 Identities=15% Similarity=0.065 Sum_probs=83.6
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccccccc-------ccCce-------eEEEEEeCCCCccccCC-Ccccccccccc-
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQT-------YHPDV-------FFIVYSDTNHTQRCLTP-MPFCSQVENFV- 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~-------~~~~~-------~~i~i~Dt~g~~~~~~~-~~~~~~~~~~~- 115 (250)
++|+++|.+|+||||++| .+++.. .|... ..... ..+.++||||-...-.. ......+..+.
T Consensus 1 l~IlllG~tGsGKSs~~N-~ilg~~-~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~ 78 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGN-SILGKE-VFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEIIREIKRCLS 78 (212)
T ss_dssp EEEEEECSTTSSHHHHHH-HHHTSS--SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHhccc-ceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHHHHHHHHHH
Confidence 579999999999999999 777642 22221 11111 16789999995321110 00000011111
Q ss_pred -ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCC-CCcEEEEeeCCCccCCCccC-------HHHHHHHHHHhCCe
Q psy5810 116 -QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVT-------HSDGKKLAYAWGVK 186 (250)
Q Consensus 116 -~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~~~v~-------~~~~~~~~~~~~~~ 186 (250)
...+.|+++||++.++. +-++ ...++.+.+..+.. -.-++||.+..|......+. .....++.+..+-.
T Consensus 79 ~~~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 79 LCSPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HTTT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred hccCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 11278999999999832 2222 12222333322221 23478888888864433321 12244566777777
Q ss_pred EEEEecC------CCCCHHHHHHHHHHHHHhhh
Q psy5810 187 FVETSVG------LVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 187 ~~evSa~------~~~~I~~lf~~l~~~i~~~~ 213 (250)
|...+.+ +...+.+++..+-..+.+..
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8877766 23457777777776666554
No 299
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.69 E-value=1.8e-08 Score=97.17 Aligned_cols=100 Identities=14% Similarity=0.087 Sum_probs=62.0
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccc-------------ccccc-------cccCc-----------eeEEEEEeCCCCc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQV-------------ENFVQ-------TYHPD-----------VFFIVYSDTNHTQ 99 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-------------~~~~~-------~~~~~-----------~~~i~i~Dt~g~~ 99 (250)
..+|+|+|..++|||||++ +|+... ..+.+ |+... -..+.+|||+|..
T Consensus 19 irnI~ivGh~~~GKTTL~~-~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~ 97 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSD-NLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV 97 (720)
T ss_pred ccEEEEEEeCCCCHHHHHH-HHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence 3469999999999999998 665310 01111 11111 1267889999986
Q ss_pred cc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 100 RC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 100 ~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
.. .....++ .+|++++|+|..+....+....|.. .. ..+.|+++++||+|..
T Consensus 98 ~f~~~~~~al~----------~aD~~llVvda~~g~~~~t~~~~~~-~~----~~~~p~ivviNKiD~~ 151 (720)
T TIGR00490 98 DFGGDVTRAMR----------AVDGAIVVVCAVEGVMPQTETVLRQ-AL----KENVKPVLFINKVDRL 151 (720)
T ss_pred ccHHHHHHHHH----------hcCEEEEEEecCCCCCccHHHHHHH-HH----HcCCCEEEEEEChhcc
Confidence 31 1122222 8999999999987433222222222 21 2467888999999974
No 300
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.68 E-value=4.7e-07 Score=80.43 Aligned_cols=151 Identities=15% Similarity=0.160 Sum_probs=90.4
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc-----------------------cccccccccCce---------------eEEEE
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ-----------------------VENFVQTYHPDV---------------FFIVY 92 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~-----------------------~~~~~~~~~~~~---------------~~i~i 92 (250)
.+-|.|+|+.++|||||+| +|.+. .+....|..|.+ .++.+
T Consensus 17 ~IyIGvvGpvrtGKSTfIn-~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIK-KFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred cEEEEEEcCCCCChHHHHH-HHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 3459999999999999998 78774 111113333433 26778
Q ss_pred EeCCCCc--cccCCC-----------cccccc----c----cccccC-CCcEEEEEE-eCC----CHHhHHHH-HHHHHH
Q psy5810 93 SDTNHTQ--RCLTPM-----------PFCSQV----E----NFVQTY-HPDVFVIVY-SVI----ERKTFKKA-EDMLKT 144 (250)
Q Consensus 93 ~Dt~g~~--~~~~~~-----------~~~~~~----~----~~~~~~-~ad~iilV~-D~~----~~~Sf~~~-~~~~~~ 144 (250)
.||+|-. ..+... +|...+ + ....+. ++++.|+|. |.+ .++.+... ..|+.+
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 9999842 111111 111000 0 111122 789999998 664 12233333 468888
Q ss_pred HHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC--CCHHHHHHHHHHH
Q psy5810 145 LWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV--YKTDELLVGIARQ 208 (250)
Q Consensus 145 i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~--~~I~~lf~~l~~~ 208 (250)
+.+ .++|+++|.||.|-.... +.+...++..+++.+++.+|+..- ..|..+++.++-.
T Consensus 176 Lk~----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~E 235 (492)
T TIGR02836 176 LKE----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLYE 235 (492)
T ss_pred HHh----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHhc
Confidence 865 489999999999932211 344455667778999888887664 3566666655543
No 301
>KOG0462|consensus
Probab=98.68 E-value=2e-07 Score=84.50 Aligned_cols=145 Identities=14% Similarity=0.124 Sum_probs=94.3
Q ss_pred EEEEEcCCCCchhhhchhhhcccccc---------cc------ccccCcee--------------EEEEEeCCCCc--cc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVEN---------FV------QTYHPDVF--------------FIVYSDTNHTQ--RC 101 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~---------~~------~~~~~~~~--------------~i~i~Dt~g~~--~~ 101 (250)
.+.||-.-.-|||||.- +++...+. +. ..-|.|+. .+.++||||.- ..
T Consensus 62 NfsIIAHVDHGKSTLaD-rLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~ 140 (650)
T KOG0462|consen 62 NFSIIAHVDHGKSTLAD-RLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSG 140 (650)
T ss_pred ceEEEEEecCCcchHHH-HHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccccc
Confidence 38899999999999997 65543221 11 11222221 45678999963 22
Q ss_pred cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH
Q psy5810 102 LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY 181 (250)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~ 181 (250)
-....+. -++|++||.|....---+.+.++..-+. .+..+|.|.||+|++..+ +++......
T Consensus 141 EVsRsla----------ac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~ad---pe~V~~q~~ 202 (650)
T KOG0462|consen 141 EVSRSLA----------ACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSAD---PERVENQLF 202 (650)
T ss_pred eehehhh----------hcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCC---HHHHHHHHH
Confidence 2223333 5899999999988544444444333332 467889999999997643 344443333
Q ss_pred H-hC---CeEEEEecCCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810 182 A-WG---VKFVETSVGLVYKTDELLVGIARQAGLNKKRN 216 (250)
Q Consensus 182 ~-~~---~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~ 216 (250)
+ ++ .+.+.+||++|.|+.+++..+++.+.......
T Consensus 203 ~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~ 241 (650)
T KOG0462|consen 203 ELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIR 241 (650)
T ss_pred HHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence 2 23 35899999999999999999999887654443
No 302
>PRK00007 elongation factor G; Reviewed
Probab=98.66 E-value=2.1e-07 Score=89.48 Aligned_cols=130 Identities=11% Similarity=-0.101 Sum_probs=75.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccc---cc---c------------ccccCcee-----------EEEEEeCCCCcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE---NF---V------------QTYHPDVF-----------FIVYSDTNHTQR 100 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~---~~---~------------~~~~~~~~-----------~i~i~Dt~g~~~ 100 (250)
+..+|+|+|..++|||||++ +++...+ .. . ..-+.++. .+.+.||+|...
T Consensus 9 ~Irni~iiG~~~~GKsTL~~-~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~~ 87 (693)
T PRK00007 9 RYRNIGIMAHIDAGKTTTTE-RILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHVD 87 (693)
T ss_pred ceeEEEEECCCCCCHHHHHH-HHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcHH
Confidence 34469999999999999999 6753111 10 0 11122221 577899999643
Q ss_pred ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH
Q psy5810 101 CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180 (250)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~ 180 (250)
.. .+...+++.+|++++|.|......-+...-|. .+.+ .++|++++.||+|+.+.. ......++.
T Consensus 88 f~--------~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~-~~~~----~~~p~iv~vNK~D~~~~~--~~~~~~~i~ 152 (693)
T PRK00007 88 FT--------IEVERSLRVLDGAVAVFDAVGGVEPQSETVWR-QADK----YKVPRIAFVNKMDRTGAD--FYRVVEQIK 152 (693)
T ss_pred HH--------HHHHHHHHHcCEEEEEEECCCCcchhhHHHHH-HHHH----cCCCEEEEEECCCCCCCC--HHHHHHHHH
Confidence 11 12222333789999999988764444333232 2322 468999999999986422 122223333
Q ss_pred HHhCC----eEEEEecCCC
Q psy5810 181 YAWGV----KFVETSVGLV 195 (250)
Q Consensus 181 ~~~~~----~~~evSa~~~ 195 (250)
+.++. ..+++|+.++
T Consensus 153 ~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 153 DRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHhCCCeeeEEecCccCCc
Confidence 44443 2456677665
No 303
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=6.5e-08 Score=85.16 Aligned_cols=141 Identities=16% Similarity=0.100 Sum_probs=80.4
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccc-----------cccC--------------------cee---------
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-----------TYHP--------------------DVF--------- 88 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-----------~~~~--------------------~~~--------- 88 (250)
-.+++++++|...+|||||+- +++...+.+.. ..+. |++
T Consensus 5 Kph~nl~~iGHVD~GKSTl~G-rLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVG-RLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCceEEEEEcCCCCCchhhhh-hhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 456789999999999999998 55443111110 0111 111
Q ss_pred --EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH---hHHH--HHHHHHHHHhhhCCCCCcEEEEee
Q psy5810 89 --FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK---TFKK--AEDMLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 89 --~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~---Sf~~--~~~~~~~i~~~~~~~~~piilv~n 161 (250)
.+.|.|++|... |...++...- .||++|||.|..+.+ +|.. .....-.+.+.. .-..+|++.|
T Consensus 84 k~~~tIiDaPGHrd-----FvknmItGas---qAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl--Gi~~lIVavN 153 (428)
T COG5256 84 KYNFTIIDAPGHRD-----FVKNMITGAS---QADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL--GIKQLIVAVN 153 (428)
T ss_pred CceEEEeeCCchHH-----HHHHhhcchh---hccEEEEEEECCCCccccccccCCchhHHHHHHHhc--CCceEEEEEE
Confidence 467889999431 1111111111 699999999998863 2211 111111222221 2234889999
Q ss_pred CCCccCCCccCHHHH----HHHHHHhC-----CeEEEEecCCCCCHHH
Q psy5810 162 KADLERRRQVTHSDG----KKLAYAWG-----VKFVETSVGLVYKTDE 200 (250)
Q Consensus 162 K~Dl~~~~~v~~~~~----~~~~~~~~-----~~~~evSa~~~~~I~~ 200 (250)
|.|+.+..+-..++. ..+.+..| ++|+++||..|.|+.+
T Consensus 154 KMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 154 KMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred cccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 999865322222222 22444444 4599999999999854
No 304
>KOG0082|consensus
Probab=98.64 E-value=4.3e-07 Score=79.38 Aligned_cols=115 Identities=14% Similarity=0.091 Sum_probs=80.0
Q ss_pred EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCHHh----------HHHHHHHHHHHHhhhCCCCCcE
Q psy5810 89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKT----------FKKAEDMLKTLWDSKYIGEKAV 156 (250)
Q Consensus 89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~S----------f~~~~~~~~~i~~~~~~~~~pi 156 (250)
.+.+.|++||. +.-|.+.|. +++++|||.++++.+- ..+....++.|.....-.+.++
T Consensus 196 ~f~~~DvGGQRseRrKWihcFe----------~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsi 265 (354)
T KOG0082|consen 196 KFRMFDVGGQRSERKKWIHCFE----------DVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSI 265 (354)
T ss_pred ceEEEeCCCcHHHhhhHHHhhc----------CCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcE
Confidence 45579999985 777888888 9999999999877421 2223446666666555568999
Q ss_pred EEEeeCCCccCC---------------CccCHHHHHHHHHHh----------CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 157 ILVANKADLERR---------------RQVTHSDGKKLAYAW----------GVKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 157 ilv~nK~Dl~~~---------------~~v~~~~~~~~~~~~----------~~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
||..||.|+=++ ..-+.+++..+.... .+-+..+.|.+-.+|+.+|..+...+.+
T Consensus 266 iLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~ 345 (354)
T KOG0082|consen 266 ILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQ 345 (354)
T ss_pred EEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHH
Confidence 999999998111 012344554443221 1224577999999999999999988876
Q ss_pred hh
Q psy5810 212 NK 213 (250)
Q Consensus 212 ~~ 213 (250)
..
T Consensus 346 ~n 347 (354)
T KOG0082|consen 346 NN 347 (354)
T ss_pred HH
Confidence 43
No 305
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.61 E-value=2e-07 Score=83.23 Aligned_cols=145 Identities=14% Similarity=0.089 Sum_probs=93.9
Q ss_pred EEEEcCCCCchhhhchhhhccc---------cccccccc------cCcee----------------EEEEEeCCCCcccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQ---------VENFVQTY------HPDVF----------------FIVYSDTNHTQRCL 102 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~---------~~~~~~~~------~~~~~----------------~i~i~Dt~g~~~~~ 102 (250)
+.||-.=.-|||||.- |++.. ..++.+++ |.|+. .+.+.||||.-..
T Consensus 12 FsIIAHIDHGKSTLaD-Rlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDF- 89 (603)
T COG0481 12 FSIIAHIDHGKSTLAD-RLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDF- 89 (603)
T ss_pred eEEEEEecCCcchHHH-HHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCccce-
Confidence 7777777889999997 65442 11122222 22222 4567899986311
Q ss_pred CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH-HHHHH
Q psy5810 103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG-KKLAY 181 (250)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~ 181 (250)
.+|.-.+++.+.+++||.|.+..-.-+.+.+.+.-+. .+.-+|-|.||+||+.. +++.. .+.-.
T Consensus 90 -------sYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~A---dpervk~eIe~ 154 (603)
T COG0481 90 -------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAA---DPERVKQEIED 154 (603)
T ss_pred -------EEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCC---CHHHHHHHHHH
Confidence 0111112226899999999998655455555444442 46778888999999753 23333 33444
Q ss_pred HhCCe---EEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 182 AWGVK---FVETSVGLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 182 ~~~~~---~~evSa~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
-.|++ .+.+||++|.||+++++.++..+......
T Consensus 155 ~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~ 191 (603)
T COG0481 155 IIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGD 191 (603)
T ss_pred HhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCC
Confidence 45664 78999999999999999999988765543
No 306
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.61 E-value=6.6e-07 Score=79.01 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=30.5
Q ss_pred CcEEEEeeCCCccC-CCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 154 KAVILVANKADLER-RRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 154 ~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
.|+++++|+.|..- ...--.++..+++.+.+.+++++||.--..+
T Consensus 200 KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~E~el 245 (364)
T PRK09601 200 KPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKIEAEI 245 (364)
T ss_pred CCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 79999999998521 1111235566677777888999998644333
No 307
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.60 E-value=1e-07 Score=74.55 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=68.1
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
++|++++|+|.+++....+ ..+...+ ...+.|+++|+||+|+.+.... .+...+....+.+++++||+++.|+
T Consensus 12 ~aD~vl~V~D~~~~~~~~~-~~l~~~~----~~~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSa~~~~gi 84 (156)
T cd01859 12 ESDVVLEVLDARDPELTRS-RKLERYV----LELGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVSAKERLGT 84 (156)
T ss_pred hCCEEEEEeeCCCCcccCC-HHHHHHH----HhCCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEEccccccH
Confidence 7999999999988654332 1222222 1246899999999998432111 1111233445678999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhH--HHHHhhhhhhhhhhhhccC
Q psy5810 199 DELLVGIARQAGLNKKRNKL--LAKKQKKMASYINNIKQFK 237 (250)
Q Consensus 199 ~~lf~~l~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 237 (250)
+++++.+...+........- -.....+.+..++.+.+.+
T Consensus 85 ~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl~~~l~~~~ 125 (156)
T cd01859 85 KILRRTIKELAKIDGKEGKVGVVGYPNVGKSSIINALKGRH 125 (156)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 99999998776532111000 0111135566666666543
No 308
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=8.6e-07 Score=77.54 Aligned_cols=71 Identities=13% Similarity=0.001 Sum_probs=49.1
Q ss_pred EEEEEEcCCCCchhhhchhhhccccc----cccccccCcee-------------------------EEEEEeCCCCc---
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVE----NFVQTYHPDVF-------------------------FIVYSDTNHTQ--- 99 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~----~~~~~~~~~~~-------------------------~i~i~Dt~g~~--- 99 (250)
+++.|+|.||||||||+| .++.... ..-.|+.|..+ .+.+.|.+|--
T Consensus 3 l~~GIVGlPNVGKSTlFn-AlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFN-ALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred ceeEEecCCCCcHHHHHH-HHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 579999999999999998 7776421 12245555554 46678988843
Q ss_pred ---cccCCCccccccccccccCCCcEEEEEEeCC
Q psy5810 100 ---RCLTPMPFCSQVENFVQTYHPDVFVIVYSVI 130 (250)
Q Consensus 100 ---~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~ 130 (250)
+.+...|+. -+|++|+++.|.|..
T Consensus 82 s~GeGLGNkFL~-------~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLD-------NIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHH-------hhhhcCeEEEEEEec
Confidence 455555443 223789999998865
No 309
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.53 E-value=1.2e-07 Score=79.27 Aligned_cols=82 Identities=24% Similarity=0.184 Sum_probs=46.6
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH---HHHH----HhCCeEEEEe
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK---KLAY----AWGVKFVETS 191 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~---~~~~----~~~~~~~evS 191 (250)
-+|.+++|.-..-.+..+-++.=+-+ ++=++|.||.|.+.... ...+.. .+.. .+..+++.+|
T Consensus 142 ~aD~~v~v~~Pg~GD~iQ~~KaGimE---------iaDi~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~ts 211 (266)
T PF03308_consen 142 MADTVVLVLVPGLGDEIQAIKAGIME---------IADIFVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTS 211 (266)
T ss_dssp TSSEEEEEEESSTCCCCCTB-TTHHH---------H-SEEEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEB
T ss_pred hcCeEEEEecCCCccHHHHHhhhhhh---------hccEEEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEE
Confidence 37889888876655544433322222 24477889999643211 111111 1111 1234799999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy5810 192 VGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~ 210 (250)
|.++.||+++++.+.+.-.
T Consensus 212 A~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 212 ALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp TTTTBSHHHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHHH
Confidence 9999999999999886433
No 310
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.50 E-value=3.2e-07 Score=71.88 Aligned_cols=117 Identities=20% Similarity=0.183 Sum_probs=69.6
Q ss_pred ccCCCcEEEEEEeCCCHHh--HHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 116 QTYHPDVFVIVYSVIERKT--FKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~S--f~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++.++|++++|.|..++.. ...+.+++.. ...+.|+++|.||+|+.+...+ ......+.+.+....+.+||+
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~-----~~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~ 78 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRCKHVEEYLKK-----EKPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN 78 (157)
T ss_pred hhhhCCEEEEEEECCCCccccCHHHHHHHHh-----ccCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence 4448999999999998743 2223333322 1245899999999998532111 111222222222235789999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhh----HHHHHhhhhhhhhhhhhccCC
Q psy5810 194 LVYKTDELLVGIARQAGLNKKRNK----LLAKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 238 (250)
++.|++++.+.+...+...+.... .-.......++.++.+.+.++
T Consensus 79 ~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~~~~~ 127 (157)
T cd01858 79 NPFGKGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLRSKKV 127 (157)
T ss_pred ccccHHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHhcCCc
Confidence 999999999988764432111000 012222478888888887655
No 311
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.49 E-value=5.1e-07 Score=84.36 Aligned_cols=115 Identities=14% Similarity=0.102 Sum_probs=66.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccccccccccc-Cce-----------eEEEEEeCCCCccccCCCccc----cccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYH-PDV-----------FFIVYSDTNHTQRCLTPMPFC----SQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~-~~~-----------~~i~i~Dt~g~~~~~~~~~~~----~~~~~~ 114 (250)
.++|+++|.+||||||++| .+++.......... .+. ..+.++||+|-.......... ..+..+
T Consensus 118 slrIvLVGKTGVGKSSLIN-SILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~ 196 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATIN-SIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKKF 196 (763)
T ss_pred ceEEEEECCCCCCHHHHHH-HHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHHH
Confidence 3669999999999999999 77764111111110 111 157889999976432111111 112223
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCC-CcEEEEeeCCCcc
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGE-KAVILVANKADLE 166 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~-~piilv~nK~Dl~ 166 (250)
++...+|++|+|..++.......-..+++.+....+..= .-+|||.|+.|..
T Consensus 197 Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~l 249 (763)
T TIGR00993 197 IKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASA 249 (763)
T ss_pred HhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccC
Confidence 332368999999988654332222356666655443221 2488899999964
No 312
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.48 E-value=4.7e-07 Score=80.52 Aligned_cols=110 Identities=25% Similarity=0.233 Sum_probs=73.3
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH----HHHHhCC---eEEEEe
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK----LAYAWGV---KFVETS 191 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~----~~~~~~~---~~~evS 191 (250)
.++++++|+|+.+.. ..|..++.+.. .+.|+++|+||+|+.. +.+..++..+ ++++.++ .++++|
T Consensus 63 ~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~~g~~~~~i~~vS 134 (360)
T TIGR03597 63 SNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKELGLKPVDIILVS 134 (360)
T ss_pred CCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHHcCCCcCcEEEec
Confidence 789999999997654 33555554432 3679999999999854 3344444444 4566776 389999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810 192 VGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (250)
|++|.|++++|+.+.+.. . ....-.-.......+++++.+.++..
T Consensus 135 Ak~g~gv~eL~~~l~~~~-~-~~~v~~vG~~nvGKStliN~l~~~~~ 179 (360)
T TIGR03597 135 AKKGNGIDELLDKIKKAR-N-KKDVYVVGVTNVGKSSLINKLLKQNN 179 (360)
T ss_pred CCCCCCHHHHHHHHHHHh-C-CCeEEEECCCCCCHHHHHHHHHhhcc
Confidence 999999999999986531 1 00111111222477888888887543
No 313
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.47 E-value=2.6e-07 Score=72.86 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=38.4
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA 163 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~ 163 (250)
.+.++||||-....... ......+. ..+|++|+|.+.++..+-.+...|.+.... ....+++|.||.
T Consensus 102 ~~~lvDtPG~~~~~~~~--~~~~~~~~--~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~----~~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEH--TEITEEYL--PKADVVIFVVDANQDLTESDMEFLKQMLDP----DKSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTT--SHHHHHHH--STTEEEEEEEETTSTGGGHHHHHHHHHHTT----TCSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhh--HHHHHHhh--ccCCEEEEEeccCcccchHHHHHHHHHhcC----CCCeEEEEEcCC
Confidence 35578999863211000 01222222 189999999999996655555555554432 334488888884
No 314
>KOG1144|consensus
Probab=98.45 E-value=1.8e-06 Score=80.76 Aligned_cols=144 Identities=15% Similarity=0.108 Sum_probs=89.5
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccc------cccccccccCcee-----------------------EEEEEeCCCCc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQ------VENFVQTYHPDVF-----------------------FIVYSDTNHTQ 99 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~------~~~~~~~~~~~~~-----------------------~i~i~Dt~g~~ 99 (250)
.+..-++|+|.-..|||-|+- .+.+. .+.....+|.|+. -+.++||+|.+
T Consensus 473 lRSPIcCilGHVDTGKTKlld-~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghE 551 (1064)
T KOG1144|consen 473 LRSPICCILGHVDTGKTKLLD-KIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHE 551 (1064)
T ss_pred cCCceEEEeecccccchHHHH-HhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCch
Confidence 344459999999999999996 44442 1222334444443 35678999976
Q ss_pred c--ccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc-cCCC----
Q psy5810 100 R--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL-ERRR---- 169 (250)
Q Consensus 100 ~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl-~~~~---- 169 (250)
. .+...... -||.+|+|.|+.+ +++.+.+. .+ + ..+.|+|+..||+|. .+..
T Consensus 552 sFtnlRsrgss----------lC~~aIlvvdImhGlepqtiESi~----lL-R---~rktpFivALNKiDRLYgwk~~p~ 613 (1064)
T KOG1144|consen 552 SFTNLRSRGSS----------LCDLAILVVDIMHGLEPQTIESIN----LL-R---MRKTPFIVALNKIDRLYGWKSCPN 613 (1064)
T ss_pred hhhhhhhcccc----------ccceEEEEeehhccCCcchhHHHH----HH-H---hcCCCeEEeehhhhhhcccccCCC
Confidence 2 33333333 5899999999987 34444433 12 2 258999999999995 2111
Q ss_pred -ccCH-------HH-----------HHHHHHH-hC-------------CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 170 -QVTH-------SD-----------GKKLAYA-WG-------------VKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 170 -~v~~-------~~-----------~~~~~~~-~~-------------~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
.+-. .. ..+|+.. ++ +.++++||.+|+||.+|+.+|++....
T Consensus 614 ~~i~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk 688 (1064)
T KOG1144|consen 614 APIVEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQK 688 (1064)
T ss_pred chHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHH
Confidence 1100 00 1111110 11 236899999999999999999976544
No 315
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.42 E-value=7.4e-07 Score=74.65 Aligned_cols=74 Identities=15% Similarity=0.104 Sum_probs=40.5
Q ss_pred EEEEEeCCCCccccC---CC----ccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810 89 FIVYSDTNHTQRCLT---PM----PFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~---~~----~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n 161 (250)
.+.+.||+|-..... +. ....+.+.|++- ..+++++|.|.+...+-.+...+.+.+ .....|+++|.|
T Consensus 126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~-~~~IIL~Vvda~~d~~~~d~l~ia~~l----d~~~~rti~ViT 200 (240)
T smart00053 126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISK-EECLILAVTPANVDLANSDALKLAKEV----DPQGERTIGVIT 200 (240)
T ss_pred ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhC-ccCeEEEEEECCCCCCchhHHHHHHHH----HHcCCcEEEEEE
Confidence 456789999752211 11 111222233321 346889999876532222222333333 235789999999
Q ss_pred CCCccC
Q psy5810 162 KADLER 167 (250)
Q Consensus 162 K~Dl~~ 167 (250)
|.|..+
T Consensus 201 K~D~~~ 206 (240)
T smart00053 201 KLDLMD 206 (240)
T ss_pred CCCCCC
Confidence 999754
No 316
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.38 E-value=2.1e-06 Score=67.16 Aligned_cols=113 Identities=18% Similarity=0.021 Sum_probs=68.0
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE 200 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~ 200 (250)
|++++|.|..++.+... .|+.. ......+.|+++|.||+|+.+...+ .+....+....+..++.+||+++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~--~~~~~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIER--VLIKEKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHH--HHHhcCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 68999999998866543 23331 1112257899999999998432111 1111123233355689999999999999
Q ss_pred HHHHHHHHHHhhhhhhhHH------------HHHhhhhhhhhhhhhccCC
Q psy5810 201 LLVGIARQAGLNKKRNKLL------------AKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 201 lf~~l~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 238 (250)
+.+.+.............. .....+.+.+++.+.+.+.
T Consensus 76 L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~GKstlin~l~~~~~ 125 (155)
T cd01849 76 KESAFTKQTNSNLKSYAKDGKLKKSITVGVIGYPNVGKSSVINALLNKLK 125 (155)
T ss_pred HHHHHHHHhHHHHHHHHhccccccCcEEEEEccCCCCHHHHHHHHHcccc
Confidence 9999877643221111000 0011367777888877654
No 317
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.38 E-value=4.1e-06 Score=71.21 Aligned_cols=102 Identities=21% Similarity=0.159 Sum_probs=57.9
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
++.|..|.|.-++-..... -+|.+++|.=..-.+..+-++.=+. ++.=++|.||.|....
T Consensus 145 DvIIVETVGvGQsev~I~~-----------~aDt~~~v~~pg~GD~~Q~iK~Gim---------EiaDi~vINKaD~~~A 204 (323)
T COG1703 145 DVIIVETVGVGQSEVDIAN-----------MADTFLVVMIPGAGDDLQGIKAGIM---------EIADIIVINKADRKGA 204 (323)
T ss_pred CEEEEEecCCCcchhHHhh-----------hcceEEEEecCCCCcHHHHHHhhhh---------hhhheeeEeccChhhH
Confidence 4556677664433333332 3788887765544444444432222 3344777899996431
Q ss_pred CccCHH---HHHHHHH----H--hCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 169 RQVTHS---DGKKLAY----A--WGVKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 169 ~~v~~~---~~~~~~~----~--~~~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
. .... .+..+.. . +..+.+.+||..|+|++++++.+.+....
T Consensus 205 ~-~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~ 255 (323)
T COG1703 205 E-KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKF 255 (323)
T ss_pred H-HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHH
Confidence 1 1111 1111111 1 23458999999999999999998875443
No 318
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.30 E-value=4.5e-06 Score=72.34 Aligned_cols=135 Identities=15% Similarity=0.196 Sum_probs=82.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccc-cc--------------------------------ccccCcee--------
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN-FV--------------------------------QTYHPDVF-------- 88 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~--------------------------------~~~~~~~~-------- 88 (250)
..++++-+|.-.-||||||- |++..+.. +. ...|.|+.
T Consensus 5 ~lLRfiTcGSVDDGKSTLIG-RLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIG-RLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred cceeEEEeccccCcchhhhh-hhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 35779999999999999998 65553111 10 11122221
Q ss_pred ---EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHH--HHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810 89 ---FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAE--DMLKTLWDSKYIGEKAVILVANKA 163 (250)
Q Consensus 89 ---~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~--~~~~~i~~~~~~~~~piilv~nK~ 163 (250)
++.+-||||.++....|.-- .+ .||++|++.|.-.. -++..+ .++..+. .=..++|..||+
T Consensus 84 ~KRkFIiADTPGHeQYTRNMaTG------AS--TadlAIlLVDAR~G-vl~QTrRHs~I~sLL-----GIrhvvvAVNKm 149 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNMATG------AS--TADLAILLVDARKG-VLEQTRRHSFIASLL-----GIRHVVVAVNKM 149 (431)
T ss_pred ccceEEEecCCcHHHHhhhhhcc------cc--cccEEEEEEecchh-hHHHhHHHHHHHHHh-----CCcEEEEEEeee
Confidence 67788999987544444321 01 58999999998432 111211 1233231 123488999999
Q ss_pred CccCCCccC----HHHHHHHHHHhCC---eEEEEecCCCCCHH
Q psy5810 164 DLERRRQVT----HSDGKKLAYAWGV---KFVETSVGLVYKTD 199 (250)
Q Consensus 164 Dl~~~~~v~----~~~~~~~~~~~~~---~~~evSa~~~~~I~ 199 (250)
||.+-.+-. ..+-..|+..+++ .++++||+.|.||-
T Consensus 150 DLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 150 DLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 995422111 2234557777775 48999999999973
No 319
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.26 E-value=2.1e-06 Score=66.04 Aligned_cols=74 Identities=23% Similarity=0.145 Sum_probs=52.0
Q ss_pred cCCCcEEEEEEeCCCHHhHH--HHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFK--KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
+.++|++++|+|..++.+.. .+.+|+... ..+.|+++|.||+|+.++.. ..+..++.+..+..++++||++
T Consensus 9 i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~-----~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~~ 81 (141)
T cd01857 9 VERSDIVVQIVDARNPLLFRPPDLERYVKEV-----DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSALK 81 (141)
T ss_pred HhhCCEEEEEEEccCCcccCCHHHHHHHHhc-----cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEecC
Confidence 34899999999999887644 344454432 14789999999999854221 2233445556677899999999
Q ss_pred CCC
Q psy5810 195 VYK 197 (250)
Q Consensus 195 ~~~ 197 (250)
+.+
T Consensus 82 ~~~ 84 (141)
T cd01857 82 ENA 84 (141)
T ss_pred CCc
Confidence 875
No 320
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.23 E-value=3.2e-06 Score=67.23 Aligned_cols=86 Identities=21% Similarity=0.131 Sum_probs=57.1
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
++.+||.+++|+|.+++....+. .++..+ .+.|+++|.||+|+.+...+ .+..++.+..+..++.+||+++
T Consensus 16 ~i~~aD~il~v~D~~~~~~~~~~-~i~~~~------~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~~~ 86 (171)
T cd01856 16 KLKLVDLVIEVRDARIPLSSRNP-LLEKIL------GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAKSG 86 (171)
T ss_pred HHhhCCEEEEEeeccCccCcCCh-hhHhHh------cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECCCc
Confidence 34489999999999876543221 122222 35789999999998532111 1111222333456899999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQAG 210 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~ 210 (250)
.|++++...+...+.
T Consensus 87 ~gi~~L~~~l~~~l~ 101 (171)
T cd01856 87 KGVKKLLKAAKKLLK 101 (171)
T ss_pred ccHHHHHHHHHHHHH
Confidence 999999999887753
No 321
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=3.6e-06 Score=72.08 Aligned_cols=149 Identities=16% Similarity=0.150 Sum_probs=91.9
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc-cccccccccCce---------------------------------------eEE
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDV---------------------------------------FFI 90 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~---------------------------------------~~i 90 (250)
.+.|.++|.-.-|||||.. .+.+- +..+.+.....+ ..+
T Consensus 10 ~vNIG~vGHVdHGKtTlv~-AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTK-ALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred ceEeeeeeecccchhhhee-hhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 4559999999999999996 66552 112221111111 045
Q ss_pred EEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH----HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 91 VYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 91 ~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
.+.|.+|.+--+..+..- ++-.|+++||.+.+.+ ++-+.+. ..+|. .-..+|++-||+|+.
T Consensus 89 SfVDaPGHe~LMATMLsG--------AAlMDgAlLvIaANEpcPQPQT~EHl~--AleIi-----gik~iiIvQNKIDlV 153 (415)
T COG5257 89 SFVDAPGHETLMATMLSG--------AALMDGALLVIAANEPCPQPQTREHLM--ALEII-----GIKNIIIVQNKIDLV 153 (415)
T ss_pred EEeeCCchHHHHHHHhcc--------hhhhcceEEEEecCCCCCCCchHHHHH--HHhhh-----ccceEEEEeccccee
Confidence 566777665222222111 0024999999998774 4444432 12221 234589999999984
Q ss_pred C-CCc-cCHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 167 R-RRQ-VTHSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 167 ~-~~~-v~~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
. ++. -.+++..+|.+.- +.|++++||..+.||+.+++.+.+.+......
T Consensus 154 ~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 154 SRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred cHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccC
Confidence 3 111 2345566666533 57899999999999999999999888765443
No 322
>KOG1486|consensus
Probab=98.21 E-value=4.9e-05 Score=63.21 Aligned_cols=147 Identities=17% Similarity=0.059 Sum_probs=89.5
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCcccc--CCCcccccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRCL--TPMPFCSQVENFVQT 117 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~~--~~~~~~~~~~~~~~~ 117 (250)
.+|++||-|.||||||+. .+...... ...|..+. ..+++.|.||.-..- ...--+..+.. +
T Consensus 63 aRValIGfPSVGKStlLs-~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRGRQviav---A 137 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLS-KITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRGRQVIAV---A 137 (364)
T ss_pred eEEEEecCCCccHHHHHH-Hhhcchhh-hhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCCceEEEE---e
Confidence 449999999999999996 66653111 11121111 178899999864211 11111212222 2
Q ss_pred CCCcEEEEEEeCCCHHhHHH-HHHHHHHHHh--hhCC-------------------------------------------
Q psy5810 118 YHPDVFVIVYSVIERKTFKK-AEDMLKTLWD--SKYI------------------------------------------- 151 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~-~~~~~~~i~~--~~~~------------------------------------------- 151 (250)
+.||.++.|.|.+..+.-.. +...++.+.- ....
T Consensus 138 rtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naev 217 (364)
T KOG1486|consen 138 RTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEV 217 (364)
T ss_pred ecccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceE
Confidence 37999999999988653322 2222222210 0000
Q ss_pred -------------------CCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 152 -------------------GEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 152 -------------------~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
..++++-|-||+| +++.++..++|+.-+ -+-+|+.-..|++.+++.+-..+.
T Consensus 218 l~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 218 LFREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EEecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhc
Confidence 1267788888888 577888888887544 456777888899888888877654
No 323
>PTZ00416 elongation factor 2; Provisional
Probab=98.12 E-value=6e-06 Score=80.98 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=61.0
Q ss_pred EEEEEcCCCCchhhhchhhhccccccc----------c------ccccCc---------------------eeEEEEEeC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENF----------V------QTYHPD---------------------VFFIVYSDT 95 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~----------~------~~~~~~---------------------~~~i~i~Dt 95 (250)
+|+|+|..++|||||+. +++...... . ..-+.+ -..+.+.||
T Consensus 21 ni~iiGh~d~GKTTL~~-~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDt 99 (836)
T PTZ00416 21 NMSVIAHVDHGKSTLTD-SLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDS 99 (836)
T ss_pred EEEEECCCCCCHHHHHH-HHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcC
Confidence 59999999999999998 665421100 0 000000 113668899
Q ss_pred CCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 96 NHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
+|...... +...+++.+|++|+|.|..+.-.-....-| ..+.+ .++|++++.||+|+.
T Consensus 100 PG~~~f~~--------~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~----~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 100 PGHVDFSS--------EVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ----ERIRPVLFINKVDRA 157 (836)
T ss_pred CCHHhHHH--------HHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH----cCCCEEEEEEChhhh
Confidence 98753111 112222379999999999885433332223 33322 468999999999985
No 324
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.11 E-value=1.3e-05 Score=68.76 Aligned_cols=112 Identities=17% Similarity=0.122 Sum_probs=70.5
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
..+|++++|.|..++.+..+ .++.+.. .+.|+++|.||+|+.+.... ....++.+..+.+++.+||+++.|
T Consensus 20 ~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~~~~g 90 (276)
T TIGR03596 20 KLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINAKKGKG 90 (276)
T ss_pred hhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEECCCccc
Confidence 48999999999987754332 1222221 25799999999998532111 111112233456789999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHH------------HHhhhhhhhhhhhhccCC
Q psy5810 198 TDELLVGIARQAGLNKKRNKLLA------------KKQKKMASYINNIKQFKW 238 (250)
Q Consensus 198 I~~lf~~l~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 238 (250)
+.++.+.+...+........... ......+++++.+.+++.
T Consensus 91 i~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~vG~~nvGKSslin~l~~~~~ 143 (276)
T TIGR03596 91 VKKIIKAAKKLLKEKNEKLKAKGLKNRPIRAMIVGIPNVGKSTLINRLAGKKV 143 (276)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccCCCCCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 99999988877654322111100 011367888888887764
No 325
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.11 E-value=3e-06 Score=65.15 Aligned_cols=45 Identities=11% Similarity=0.001 Sum_probs=30.0
Q ss_pred EEEEEcCCCCchhhhchhhhccccc-cccccccCcee--------EEEEEeCCCC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF--------FIVYSDTNHT 98 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~--------~i~i~Dt~g~ 98 (250)
+++++|.+|||||||+| ++.+... ......+.+.. .+.+|||||-
T Consensus 85 ~~~~~G~~~vGKstlin-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLIN-ALVGKKKVSVSATPGKTKHFQTIFLTPTITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHH-HHhCCCceeeCCCCCcccceEEEEeCCCEEEEECCCc
Confidence 69999999999999999 7776421 11111111111 4578999985
No 326
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.10 E-value=5.9e-06 Score=81.16 Aligned_cols=102 Identities=16% Similarity=0.104 Sum_probs=61.5
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccccc---------c-c----------cc---------ccC--------------ce
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVEN---------F-V----------QT---------YHP--------------DV 87 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~---------~-~----------~~---------~~~--------------~~ 87 (250)
.-+|+|+|..++|||||+. +++..... . . -+ ++. .-
T Consensus 19 Irni~iiGhvd~GKTTL~~-~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTD-SLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNE 97 (843)
T ss_pred ccEEEEEcCCCCCHHHHHH-HHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCc
Confidence 3359999999999999998 66542110 0 0 00 000 01
Q ss_pred eEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 88 FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 88 ~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
..+.+.||||........ ..+++.+|++|+|.|....-.-....-|. .+.. .++|++++.||+|..
T Consensus 98 ~~inliDtPGh~dF~~e~--------~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~----~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 98 YLINLIDSPGHVDFSSEV--------TAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC 163 (843)
T ss_pred eEEEEECCCCHHHHHHHH--------HHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH----CCCCEEEEEECCccc
Confidence 245678999874222111 11122799999999998764433333332 2322 578999999999975
No 327
>PRK13796 GTPase YqeH; Provisional
Probab=98.07 E-value=2.1e-05 Score=70.15 Aligned_cols=108 Identities=25% Similarity=0.251 Sum_probs=69.9
Q ss_pred CCc-EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH----HHHhCC---eEEEE
Q psy5810 119 HPD-VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL----AYAWGV---KFVET 190 (250)
Q Consensus 119 ~ad-~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~---~~~ev 190 (250)
.++ .+++|.|+.|.. ..|...+.+.. .+.|+++|+||+|+.. +....++..++ ++..++ .++.+
T Consensus 68 ~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~g~~~~~v~~v 139 (365)
T PRK13796 68 DSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKELGLRPVDVVLI 139 (365)
T ss_pred ccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhcCCCcCcEEEE
Confidence 345 889999998743 23555554432 3679999999999854 33444444444 555666 47999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810 191 SVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF 236 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (250)
||+++.|++++++.+.+.... .....-.......++++|++.++
T Consensus 140 SAk~g~gI~eL~~~I~~~~~~--~~v~vvG~~NvGKSTLiN~L~~~ 183 (365)
T PRK13796 140 SAQKGHGIDELLEAIEKYREG--RDVYVVGVTNVGKSTLINRIIKE 183 (365)
T ss_pred ECCCCCCHHHHHHHHHHhcCC--CeEEEEcCCCCcHHHHHHHHHhh
Confidence 999999999999999764211 11111122225778888888754
No 328
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.05 E-value=4.2e-05 Score=65.72 Aligned_cols=108 Identities=12% Similarity=0.004 Sum_probs=55.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccc--------cccCcee---------------EEEEEeCCCCccccCC---
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ--------TYHPDVF---------------FIVYSDTNHTQRCLTP--- 104 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~--------~~~~~~~---------------~i~i~Dt~g~~~~~~~--- 104 (250)
.++|+|+|.+|+||||||| .+++....... ....+.. .+.++||+|--..+..
T Consensus 4 ~fnImVvG~sG~GKTTFIn-tL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFIN-TLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEECTTSSHHHHHH-HHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred eEEEEEECCCCCCHHHHHH-HHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 4679999999999999998 77764111110 0111111 5668999982100000
Q ss_pred -----Ccc----ccccccccc-----c--CCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810 105 -----MPF----CSQVENFVQ-----T--YHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 165 (250)
Q Consensus 105 -----~~~----~~~~~~~~~-----~--~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 165 (250)
.|. ....++..+ . ...|++++.++.+.. -+-.++ ..++.+. ..+++|-|..|+|.
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di-~~mk~Ls-----~~vNvIPvIaKaD~ 154 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI-EFMKRLS-----KRVNVIPVIAKADT 154 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH-HHHHHHT-----TTSEEEEEESTGGG
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH-HHHHHhc-----ccccEEeEEecccc
Confidence 000 000000000 0 168999999997652 222233 2344442 45788889999996
No 329
>PRK01889 GTPase RsgA; Reviewed
Probab=98.05 E-value=2.8e-05 Score=69.08 Aligned_cols=82 Identities=22% Similarity=0.200 Sum_probs=58.9
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-HhCCeEEEEecCCCC
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-AWGVKFVETSVGLVY 196 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~evSa~~~~ 196 (250)
+++|.+++|.++..+-+...+..++..+.. .++|.++|.||+||.+.. .+....+.. ..+.+++.+|++++.
T Consensus 111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 111 ANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCc
Confidence 389999999999765566566666665533 577889999999996421 111222221 346789999999999
Q ss_pred CHHHHHHHHH
Q psy5810 197 KTDELLVGIA 206 (250)
Q Consensus 197 ~I~~lf~~l~ 206 (250)
|++++..++.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888874
No 330
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.04 E-value=1.9e-05 Score=68.19 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=71.7
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
..+|++++|.|..++.+.++ .++.+.. .+.|+++|.||+|+.+... .+...++.++.+.+++.+||+++.|
T Consensus 23 ~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~~~~g 93 (287)
T PRK09563 23 KLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAKKGQG 93 (287)
T ss_pred hhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECCCccc
Confidence 48999999999987754332 2233332 2679999999999853211 1111222234467789999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHH------------HHhhhhhhhhhhhhccCC
Q psy5810 198 TDELLVGIARQAGLNKKRNKLLA------------KKQKKMASYINNIKQFKW 238 (250)
Q Consensus 198 I~~lf~~l~~~i~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~ 238 (250)
+.++.+.+...+........... ......+++++.+.+++.
T Consensus 94 i~~L~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~G~pnvGKSsliN~l~~~~~ 146 (287)
T PRK09563 94 VKKILKAAKKLLKEKNERRKAKGMRPRAIRAMIIGIPNVGKSTLINRLAGKKI 146 (287)
T ss_pred HHHHHHHHHHHHHHHHhhhhhcccCcCceEEEEECCCCCCHHHHHHHHhcCCc
Confidence 99999988877654322111000 001367889999988765
No 331
>KOG0458|consensus
Probab=98.02 E-value=1.4e-05 Score=73.28 Aligned_cols=140 Identities=18% Similarity=0.155 Sum_probs=79.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc------------------cccc-------------cccc-----------Cce
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV------------------ENFV-------------QTYH-----------PDV 87 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~------------------~~~~-------------~~~~-----------~~~ 87 (250)
.++.++++|.-.+|||||+- +++..- +... ..-| +.-
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG-~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~ 254 (603)
T KOG0458|consen 176 DHLNLVVLGHVDAGKSTLMG-HLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKS 254 (603)
T ss_pred cceEEEEEeccccchhhhhh-HHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCc
Confidence 56779999999999999996 533310 0000 0001 111
Q ss_pred eEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCH---HhHHH---HHHHHHHHHhhhCCCCCcEEEEee
Q psy5810 88 FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER---KTFKK---AEDMLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 88 ~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~---~Sf~~---~~~~~~~i~~~~~~~~~piilv~n 161 (250)
..+.+.|+||.......+... +..||+++||.|.+-. ..|+. .++ ...+.+.. .-.-++++.|
T Consensus 255 ~~~tliDaPGhkdFi~nmi~g--------~sqaD~avLvvd~s~~~FE~gfd~~gQtrE-ha~llr~L--gi~qlivaiN 323 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFIPNMISG--------ASQADVAVLVVDASTGEFESGFDPGGQTRE-HALLLRSL--GISQLIVAIN 323 (603)
T ss_pred eeEEEecCCCccccchhhhcc--------ccccceEEEEEECCcchhhhccCCCCchHH-HHHHHHHc--CcceEEEEee
Confidence 156788999943222222211 1168999999998763 24431 122 22232332 2345899999
Q ss_pred CCCccCCCccCHHHHHH----HH-HHhC-----CeEEEEecCCCCCHHHH
Q psy5810 162 KADLERRRQVTHSDGKK----LA-YAWG-----VKFVETSVGLVYKTDEL 201 (250)
Q Consensus 162 K~Dl~~~~~v~~~~~~~----~~-~~~~-----~~~~evSa~~~~~I~~l 201 (250)
|.|+.+..+-..+++.. |. +..| +.|++||+..|+|+...
T Consensus 324 KmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 324 KMDLVSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cccccCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 99986533322333322 33 3334 46999999999997543
No 332
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.00 E-value=7.4e-06 Score=64.12 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=20.7
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~ 75 (250)
.+.|+++|.+|||||||+| ++.+.
T Consensus 102 ~~~v~~~G~~nvGKStliN-~l~~~ 125 (157)
T cd01858 102 QISVGFIGYPNVGKSSIIN-TLRSK 125 (157)
T ss_pred ceEEEEEeCCCCChHHHHH-HHhcC
Confidence 4569999999999999999 77763
No 333
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.99 E-value=9.8e-06 Score=69.25 Aligned_cols=73 Identities=14% Similarity=0.048 Sum_probs=43.7
Q ss_pred EEEEcCCCCchhhhchhhhccccccc----cccccCcee------------------------EEEEEeCCCCccccCCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENF----VQTYHPDVF------------------------FIVYSDTNHTQRCLTPM 105 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~----~~~~~~~~~------------------------~i~i~Dt~g~~~~~~~~ 105 (250)
|+|+|.||||||||+| ++++..... ..|..+..+ .+++.|+||-.+.....
T Consensus 1 igivG~PN~GKSTLfn-~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFN-ALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHH-HHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 5799999999999998 888753211 112222221 37899999965322111
Q ss_pred cccccccccc-ccCCCcEEEEEEeC
Q psy5810 106 PFCSQVENFV-QTYHPDVFVIVYSV 129 (250)
Q Consensus 106 ~~~~~~~~~~-~~~~ad~iilV~D~ 129 (250)
...-..+. .++++|++++|.|.
T Consensus 80 --~glg~~fL~~i~~~D~li~VV~~ 102 (274)
T cd01900 80 --EGLGNKFLSHIREVDAIAHVVRC 102 (274)
T ss_pred --hHHHHHHHHHHHhCCEEEEEEeC
Confidence 00001111 22379999999986
No 334
>KOG3887|consensus
Probab=97.98 E-value=0.00013 Score=60.40 Aligned_cols=146 Identities=10% Similarity=0.024 Sum_probs=89.2
Q ss_pred EEEEcCCCCchhhhchhhhccc-------------cccccccccCceeEEEEEeCCCCccccCCC-----cccccccccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQ-------------VENFVQTYHPDVFFIVYSDTNHTQRCLTPM-----PFCSQVENFV 115 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~-------------~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~-----~~~~~~~~~~ 115 (250)
|+++|...+||||+-+ .+-. .....+++..+.-.+++||.|||-...-+. .++
T Consensus 30 ilLMG~rRsGKsSI~K--VVFhkMsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~------- 100 (347)
T KOG3887|consen 30 ILLMGLRRSGKSSIQK--VVFHKMSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFR------- 100 (347)
T ss_pred EEEEeecccCcchhhh--eeeeccCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHh-------
Confidence 9999999999999974 2221 011122233344478999999996444333 344
Q ss_pred ccCCCcEEEEEEeCCCH--HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc-cCCCccC------HHHHHHHHHH----
Q psy5810 116 QTYHPDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADL-ERRRQVT------HSDGKKLAYA---- 182 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~--~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl-~~~~~v~------~~~~~~~~~~---- 182 (250)
++-++++|+|..+. +.+..+....... +...+++.+=+...|.|- .++-.+. ......++..
T Consensus 101 ---~~gALifvIDaQddy~eala~L~~~v~ra--ykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~ 175 (347)
T KOG3887|consen 101 ---GVGALIFVIDAQDDYMEALARLHMTVERA--YKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEK 175 (347)
T ss_pred ---ccCeEEEEEechHHHHHHHHHHHHHhhhe--eecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhcc
Confidence 78999999998764 3344444333333 345578888888999994 3322222 1112222221
Q ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
..+.|+-+|.- ...|.|.|..+++.+..+.+
T Consensus 176 v~vsf~LTSIy-DHSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 176 VQVSFYLTSIY-DHSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred ceEEEEEeeec-chHHHHHHHHHHHHHhhhch
Confidence 12346666554 55899999999988776544
No 335
>KOG0461|consensus
Probab=97.97 E-value=6.6e-05 Score=65.06 Aligned_cols=142 Identities=16% Similarity=0.112 Sum_probs=80.0
Q ss_pred EEEEEEcCCCCchhhhchhhhccc--ccccccc-----ccCcee--------------------EEEEEeCCCCcc---c
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQT-----YHPDVF--------------------FIVYSDTNHTQR---C 101 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~-----~~~~~~--------------------~i~i~Dt~g~~~---~ 101 (250)
+.+.++|.-.+|||+|.. ++..- +..|... -+.+.+ .+.+.|.+|... .
T Consensus 8 ~N~GiLGHvDSGKTtLar-als~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRt 86 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLAR-ALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRT 86 (522)
T ss_pred eeeeeEeeccCchHHHHH-HHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHH
Confidence 569999999999999994 76542 1122211 122221 345678887641 1
Q ss_pred c-CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHH-HHHHHHhhhCCCCCcEEEEeeCCCccC--CCccCHH-HH
Q psy5810 102 L-TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAED-MLKTLWDSKYIGEKAVILVANKADLER--RRQVTHS-DG 176 (250)
Q Consensus 102 ~-~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~-~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~v~~~-~~ 176 (250)
+ .... -.|..++|+|+.....-+..+- .+-++ --...|+|.||+|+-. .|.-..+ ..
T Consensus 87 iiggaq------------iiDlm~lviDv~kG~QtQtAEcLiig~~------~c~klvvvinkid~lpE~qr~ski~k~~ 148 (522)
T KOG0461|consen 87 IIGGAQ------------IIDLMILVIDVQKGKQTQTAECLIIGEL------LCKKLVVVINKIDVLPENQRASKIEKSA 148 (522)
T ss_pred HHhhhh------------eeeeeeEEEehhcccccccchhhhhhhh------hccceEEEEeccccccchhhhhHHHHHH
Confidence 1 1111 2588899999977422222111 22222 1234677788888632 2221112 22
Q ss_pred HHHHHHh-------CCeEEEEecCCC----CCHHHHHHHHHHHHHhh
Q psy5810 177 KKLAYAW-------GVKFVETSVGLV----YKTDELLVGIARQAGLN 212 (250)
Q Consensus 177 ~~~~~~~-------~~~~~evSa~~~----~~I~~lf~~l~~~i~~~ 212 (250)
.+..+.+ +.|++++||+.| ++|.++.+.|-.++.+.
T Consensus 149 kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P 195 (522)
T KOG0461|consen 149 KKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEP 195 (522)
T ss_pred HHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCC
Confidence 2333322 268999999999 66777777666666554
No 336
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.96 E-value=1e-05 Score=78.39 Aligned_cols=100 Identities=13% Similarity=0.050 Sum_probs=59.7
Q ss_pred EEEEEcCCCCchhhhchhhhcccccccc--------------------ccccC-----------ceeEEEEEeCCCCccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFV--------------------QTYHP-----------DVFFIVYSDTNHTQRC 101 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~--------------------~~~~~-----------~~~~i~i~Dt~g~~~~ 101 (250)
.|+|+|..++|||||+. +++....... -++.. .-..+.+.||||....
T Consensus 22 ni~iigh~d~GKTTL~e-~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~df 100 (731)
T PRK07560 22 NIGIIAHIDHGKTTLSD-NLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDF 100 (731)
T ss_pred EEEEEEeCCCCHHHHHH-HHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCccCh
Confidence 49999999999999998 6654211100 00000 1124667899997642
Q ss_pred cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 102 LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
. . +...+++.+|++|+|+|......-+....|.. ..+ .+.|.|++.||+|..
T Consensus 101 ~-----~---~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~-~~~----~~~~~iv~iNK~D~~ 152 (731)
T PRK07560 101 G-----G---DVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQ-ALR----ERVKPVLFINKVDRL 152 (731)
T ss_pred H-----H---HHHHHHHhcCEEEEEEECCCCCCccHHHHHHH-HHH----cCCCeEEEEECchhh
Confidence 1 1 11112237999999999887543332233322 222 246789999999974
No 337
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.93 E-value=1e-05 Score=63.10 Aligned_cols=46 Identities=11% Similarity=-0.142 Sum_probs=31.1
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee--------EEEEEeCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF--------FIVYSDTNH 97 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~--------~i~i~Dt~g 97 (250)
..+++++|.+|+|||||++ ++.+.. ....++.+.+.. .+++|||+|
T Consensus 101 ~~~~~~ig~~~~Gkssl~~-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVGKSSIIN-ALKGRHSASTSPSPGYTKGEQLVKITSKIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCCHHHHHH-HHhCCCccccCCCCCeeeeeEEEEcCCCEEEEECcC
Confidence 4569999999999999998 777631 122223232221 467899998
No 338
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.92 E-value=8.7e-06 Score=64.90 Aligned_cols=45 Identities=13% Similarity=-0.076 Sum_probs=30.5
Q ss_pred EEEEEEcCCCCchhhhchhhhccccc-cccccccCce--------eEEEEEeCCC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDV--------FFIVYSDTNH 97 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~--------~~i~i~Dt~g 97 (250)
++++++|.+|||||||+| ++.+... ......|.|. ..++++||||
T Consensus 118 ~~~~~vG~pnvGKSslin-~l~~~~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPG 171 (172)
T cd04178 118 ITVGVVGFPNVGKSSLIN-SLKRSRACNVGATPGVTKSMQEVHLDKKVKLLDSPG 171 (172)
T ss_pred cEEEEEcCCCCCHHHHHH-HHhCcccceecCCCCeEcceEEEEeCCCEEEEECcC
Confidence 679999999999999999 7776422 1222222222 1466788887
No 339
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=97.90 E-value=0.00013 Score=65.61 Aligned_cols=144 Identities=16% Similarity=0.053 Sum_probs=89.5
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccc----------------cCcee-----------EEEEEeCCCCc--cccCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTY----------------HPDVF-----------FIVYSDTNHTQ--RCLTP 104 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~----------------~~~~~-----------~i~i~Dt~g~~--~~~~~ 104 (250)
|+||-.-.-|||||+. .++.+.+.|...- |.|+- +|.|.||+|.- ..-..
T Consensus 8 IAIIAHVDHGKTTLVD-~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 8 IAIIAHVDHGKTTLVD-ALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred eEEEEEecCCcchHHH-HHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCccchhh
Confidence 8999999999999998 7777644444321 11111 78899999963 22222
Q ss_pred CccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc-CHHHHHHHH---
Q psy5810 105 MPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV-THSDGKKLA--- 180 (250)
Q Consensus 105 ~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~--- 180 (250)
.... =.|+++++.|..+..=- ..+-.+++..+ .+.+.|+|.||+|.+..|.- -.++...+.
T Consensus 87 Rvl~----------MVDgvlLlVDA~EGpMP-QTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L 151 (603)
T COG1217 87 RVLS----------MVDGVLLLVDASEGPMP-QTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFVEL 151 (603)
T ss_pred hhhh----------hcceEEEEEEcccCCCC-chhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHh
Confidence 2222 37999999999873211 11112222222 35666778899998764421 112222222
Q ss_pred ----HHhCCeEEEEecCCCC----------CHHHHHHHHHHHHHhhh
Q psy5810 181 ----YAWGVKFVETSVGLVY----------KTDELLVGIARQAGLNK 213 (250)
Q Consensus 181 ----~~~~~~~~evSa~~~~----------~I~~lf~~l~~~i~~~~ 213 (250)
+.+++|++..||++|. ++..+|+.+++.+....
T Consensus 152 ~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 152 GATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred CCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 2356889999999875 47888888888776554
No 340
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.87 E-value=1.5e-05 Score=68.82 Aligned_cols=49 Identities=8% Similarity=-0.105 Sum_probs=34.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee--------EEEEEeCCCCc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF--------FIVYSDTNHTQ 99 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~--------~i~i~Dt~g~~ 99 (250)
..++++++|.+|||||||+| .+.+... ......|.|.. .++++||||-.
T Consensus 120 ~~~~~~~~G~pnvGKSsliN-~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~ 177 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLIN-RLAGKKIAKTGNRPGVTKAQQWIKLGKGLELLDTPGIL 177 (287)
T ss_pred CceEEEEECCCCCCHHHHHH-HHhcCCccccCCCCCeEEEEEEEEeCCcEEEEECCCcC
Confidence 34679999999999999999 7776422 22223333322 57789999974
No 341
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.83 E-value=1.9e-05 Score=62.74 Aligned_cols=47 Identities=15% Similarity=-0.092 Sum_probs=30.7
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccc-ccc----ccccCce----eEEEEEeCCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-NFV----QTYHPDV----FFIVYSDTNHT 98 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~----~~~~~~~----~~i~i~Dt~g~ 98 (250)
.++++++|.+|||||||+| ++.+... ... .|..... ..+.+|||+|-
T Consensus 115 ~~~~~~~G~~~vGKstlin-~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLIN-RLRGKKVAKVGNKPGVTKGIQWIKISPGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHH-HHhCCCceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence 3679999999999999998 7776311 111 1111111 15668999984
No 342
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.80 E-value=2.1e-05 Score=67.52 Aligned_cols=49 Identities=8% Similarity=-0.091 Sum_probs=32.8
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee--------EEEEEeCCCCc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF--------FIVYSDTNHTQ 99 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~--------~i~i~Dt~g~~ 99 (250)
..++++++|.+|||||||+| ++.+.. .......+.|.. .++++||||..
T Consensus 117 ~~~~~~~vG~~nvGKSslin-~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~ 174 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLIN-RLAGKKVAKVGNRPGVTKGQQWIKLSDGLELLDTPGIL 174 (276)
T ss_pred CCeEEEEECCCCCCHHHHHH-HHhCCCccccCCCCCeecceEEEEeCCCEEEEECCCcc
Confidence 34779999999999999999 777631 111122222211 56799999974
No 343
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.77 E-value=3.3e-05 Score=78.48 Aligned_cols=109 Identities=15% Similarity=0.014 Sum_probs=64.3
Q ss_pred EEEEcCCCCchhhhchhhhccccccccc--------cccCcee-------EEEEEeCCCCccc----------cCCCccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQ--------TYHPDVF-------FIVYSDTNHTQRC----------LTPMPFC 108 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~--------~~~~~~~-------~i~i~Dt~g~~~~----------~~~~~~~ 108 (250)
.+|||++|+||||+|. +- +..-...+ ..+.+.. +-.++||+|.+-. .|..+..
T Consensus 114 YlviG~~gsGKtt~l~-~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~fL~ 191 (1169)
T TIGR03348 114 YLVIGPPGSGKTTLLQ-NS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLGFLG 191 (1169)
T ss_pred EEEECCCCCchhHHHH-hC-CCCCcCchhhccccccCCCCCcccceEecCCEEEEcCCCccccCCCcccccHHHHHHHHH
Confidence 9999999999999996 32 21111111 1122221 4557899996511 1222221
Q ss_pred cccccccccCCCcEEEEEEeCCCHH-----hH----HHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 109 SQVENFVQTYHPDVFVIVYSVIERK-----TF----KKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 109 ~~~~~~~~~~~ad~iilV~D~~~~~-----Sf----~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
....+..-+..+|+|+++|+.+.- .. ..++..+.++.+. -....|+.||.||+|+.
T Consensus 192 -~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~-lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 192 -LLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQ-LGARFPVYLVLTKADLL 256 (1169)
T ss_pred -HHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHH-hCCCCCEEEEEecchhh
Confidence 112222223689999999986632 11 2345566666544 34589999999999974
No 344
>KOG0468|consensus
Probab=97.74 E-value=5.3e-05 Score=70.54 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=62.8
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccc-cccccccC----------------cee----------------EEEEEeC
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHP----------------DVF----------------FIVYSDT 95 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~----------------~~~----------------~i~i~Dt 95 (250)
.....|+++|.-+.|||+|+. -+...+. .+...... ++. -+.+.||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D-~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMD-LLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred ceEEEEEEeeccccChhHHHH-hhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 344559999999999999996 5554311 01000000 000 3456788
Q ss_pred CCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810 96 NHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 165 (250)
Q Consensus 96 ~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 165 (250)
+|.-.. +-|...+++-+|++++|+|+.+.-.++.- ..++.. ...+.|+++|.||.|.
T Consensus 205 PGHVnF--------~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikha----iq~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 205 PGHVNF--------SDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHA----IQNRLPIVVVINKVDR 261 (971)
T ss_pred CCcccc--------hHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHH----HhccCcEEEEEehhHH
Confidence 875311 01111122268999999999988777543 333333 3368999999999995
No 345
>KOG2486|consensus
Probab=97.73 E-value=4.2e-05 Score=64.43 Aligned_cols=143 Identities=11% Similarity=-0.029 Sum_probs=76.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccc---cccccccCce--------eEEEEEeCCCC----c--------cccCCCc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE---NFVQTYHPDV--------FFIVYSDTNHT----Q--------RCLTPMP 106 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~---~~~~~~~~~~--------~~i~i~Dt~g~----~--------~~~~~~~ 106 (250)
+...++++|.+||||||||| -+..... .-.+..+.+- ..+++.|.+|- + ..++..|
T Consensus 135 ~~pe~~~~g~SNVGKSSLln-~~~r~k~~~~t~k~K~g~Tq~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y 213 (320)
T KOG2486|consen 135 KRPELAFYGRSNVGKSSLLN-DLVRVKNIADTSKSKNGKTQAINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSY 213 (320)
T ss_pred CCceeeeecCCcccHHHHHh-hhhhhhhhhhhcCCCCccceeeeeeeccceEEEEecCCcccccCCccCcchHhHhHHHH
Confidence 44569999999999999998 5544200 0000111111 16778899982 1 1222223
Q ss_pred cccccccccccCCCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC------CCccCHH----
Q psy5810 107 FCSQVENFVQTYHPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLER------RRQVTHS---- 174 (250)
Q Consensus 107 ~~~~~~~~~~~~~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~------~~~v~~~---- 174 (250)
+.. .+ +---+++..|.+-+- .-...-+|+.+ .++|+.+|.||||... .++....
T Consensus 214 ~le-R~------nLv~~FLLvd~sv~i~~~D~~~i~~~ge-------~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 214 LLE-RE------NLVRVFLLVDASVPIQPTDNPEIAWLGE-------NNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred HHh-hh------hhheeeeeeeccCCCCCCChHHHHHHhh-------cCCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 221 11 122344455554431 11122234332 5899999999999631 1111111
Q ss_pred -HHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy5810 175 -DGKKLAYAWGVKFVETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 175 -~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~ 207 (250)
..-+.+-....|++.+|+.++.|+++++-.+..
T Consensus 280 ~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 280 QGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred hhccccceeccCCceeeecccccCceeeeeehhh
Confidence 111111222456888999999999988766553
No 346
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.72 E-value=2.3e-05 Score=63.26 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..++++|.+|||||||+| .+.+
T Consensus 128 ~~~~~~G~~nvGKStliN-~l~~ 149 (190)
T cd01855 128 GDVYVVGATNVGKSTLIN-ALLK 149 (190)
T ss_pred CcEEEEcCCCCCHHHHHH-HHHH
Confidence 359999999999999999 7765
No 347
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.69 E-value=0.00045 Score=60.45 Aligned_cols=70 Identities=13% Similarity=0.120 Sum_probs=43.3
Q ss_pred CCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 119 HPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 119 ~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
.++..++|.|.+-. +.+..+.. ..+ .-.+.-+|.||.|.... .-.+...+...++|+..++ +|++
T Consensus 232 ~p~~~~LVl~a~~g~~~~~~a~~----f~~----~~~~~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~ 297 (318)
T PRK10416 232 APHEVLLVLDATTGQNALSQAKA----FHE----AVGLTGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGEG 297 (318)
T ss_pred CCceEEEEEECCCChHHHHHHHH----HHh----hCCCCEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCC
Confidence 46788899998753 23333222 211 11245677899995432 2235556677799988887 8888
Q ss_pred HHHHH
Q psy5810 198 TDELL 202 (250)
Q Consensus 198 I~~lf 202 (250)
++++-
T Consensus 298 ~~Dl~ 302 (318)
T PRK10416 298 IDDLQ 302 (318)
T ss_pred hhhCc
Confidence 86654
No 348
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.68 E-value=3.5e-05 Score=67.54 Aligned_cols=50 Identities=12% Similarity=-0.116 Sum_probs=35.0
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee--------EEEEEeCCCCc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF--------FIVYSDTNHTQ 99 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~--------~i~i~Dt~g~~ 99 (250)
+..++++++|-|||||||||| ++.+... ......|.|-. .+.++||||--
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN-~L~~k~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii 188 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLIN-RLLGKKVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGII 188 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHH-HHhcccceeeCCCCceecceEEEEcCCCeEEecCCCcC
Confidence 444679999999999999999 7887522 22223333332 56789999964
No 349
>PRK14974 cell division protein FtsY; Provisional
Probab=97.66 E-value=0.0003 Score=61.92 Aligned_cols=100 Identities=15% Similarity=0.198 Sum_probs=54.3
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
++.+.||+|.-..-... ....+........|..++|.|.+-.. ..+.+..+... -+ +--+|.||.|...
T Consensus 224 DvVLIDTaGr~~~~~~l--m~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~-------~~-~~giIlTKlD~~~ 293 (336)
T PRK14974 224 DVVLIDTAGRMHTDANL--MDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA-------VG-IDGVILTKVDADA 293 (336)
T ss_pred CEEEEECCCccCCcHHH--HHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc-------CC-CCEEEEeeecCCC
Confidence 46788999864211100 00111111112578899999986643 22222221111 12 3456679999754
Q ss_pred CCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy5810 168 RRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVG 204 (250)
Q Consensus 168 ~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~ 204 (250)
.- -.+...+...+.|+..++ +|++++++...
T Consensus 294 ~~----G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~~ 324 (336)
T PRK14974 294 KG----GAALSIAYVIGKPILFLG--VGQGYDDLIPF 324 (336)
T ss_pred Cc----cHHHHHHHHHCcCEEEEe--CCCChhhcccC
Confidence 22 234455566789988776 79998776543
No 350
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.66 E-value=2e-05 Score=61.80 Aligned_cols=21 Identities=5% Similarity=0.143 Sum_probs=19.1
Q ss_pred EEEEcCCCCchhhhchhhhccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~ 75 (250)
++++|.+|||||||+| .+...
T Consensus 38 ~vl~G~SGvGKSSLiN-~L~~~ 58 (161)
T PF03193_consen 38 SVLLGQSGVGKSSLIN-ALLPE 58 (161)
T ss_dssp EEEECSTTSSHHHHHH-HHHTS
T ss_pred EEEECCCCCCHHHHHH-HHHhh
Confidence 9999999999999999 77764
No 351
>KOG1954|consensus
Probab=97.65 E-value=0.00014 Score=63.60 Aligned_cols=72 Identities=18% Similarity=0.220 Sum_probs=41.2
Q ss_pred EEEEEeCCCCc----cccCCCc-cccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810 89 FIVYSDTNHTQ----RCLTPMP-FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA 163 (250)
Q Consensus 89 ~i~i~Dt~g~~----~~~~~~~-~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~ 163 (250)
.+.|.||+|.- +.+...| |....+=+.. .+|.++++||....+--++....+..+.. .+-.+-+|.||.
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFae--R~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKA 221 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAE--RVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKA 221 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHH--hccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccc
Confidence 56789999953 2232332 2222222222 79999999998765433334444444432 233466777999
Q ss_pred Ccc
Q psy5810 164 DLE 166 (250)
Q Consensus 164 Dl~ 166 (250)
|..
T Consensus 222 DqV 224 (532)
T KOG1954|consen 222 DQV 224 (532)
T ss_pred ccc
Confidence 954
No 352
>KOG0448|consensus
Probab=97.61 E-value=0.00037 Score=65.29 Aligned_cols=46 Identities=20% Similarity=0.358 Sum_probs=30.6
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR 169 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~ 169 (250)
++|++|+|....+..+..+ .+.+....+ .+..+.++-||+|.....
T Consensus 232 daDVfVlV~NaEntlt~se-k~Ff~~vs~----~KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 232 DADVFVLVVNAENTLTLSE-KQFFHKVSE----EKPNIFILNNKWDASASE 277 (749)
T ss_pred cCCeEEEEecCccHhHHHH-HHHHHHhhc----cCCcEEEEechhhhhccc
Confidence 7999999998877655443 334444422 234478888999986543
No 353
>KOG1491|consensus
Probab=97.55 E-value=0.0001 Score=63.79 Aligned_cols=73 Identities=12% Similarity=0.040 Sum_probs=47.8
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccccc----ccccccCcee------------------------EEEEEeCCCCc-
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF------------------------FIVYSDTNHTQ- 99 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~------------------------~i~i~Dt~g~~- 99 (250)
-..+|+.|+|.||||||||+| .+.+.... .-.|+.|... .+.++|++|--
T Consensus 18 ~~~lkiGIVGlPNvGKST~fn-alT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFN-ALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CCcceeeEeeCCCCchHHHHH-HHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 356789999999999999998 77775222 1133444332 56789999853
Q ss_pred -----cccCCCccccccccccccCCCcEEEEEEeC
Q psy5810 100 -----RCLTPMPFCSQVENFVQTYHPDVFVIVYSV 129 (250)
Q Consensus 100 -----~~~~~~~~~~~~~~~~~~~~ad~iilV~D~ 129 (250)
+.+...++. -+|.+|+++-|.+.
T Consensus 97 GAs~G~GLGN~FLs-------~iR~vDaifhVVr~ 124 (391)
T KOG1491|consen 97 GASAGEGLGNKFLS-------HIRHVDAIFHVVRA 124 (391)
T ss_pred CcccCcCchHHHHH-------hhhhccceeEEEEe
Confidence 444444433 12268888887664
No 354
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.53 E-value=0.00047 Score=59.00 Aligned_cols=71 Identities=17% Similarity=0.157 Sum_probs=44.3
Q ss_pred CCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 119 HPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 119 ~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
.+|..++|.|.+-. +.++.+ ....+. - .+.-+|.||.|.... .-.+.......+.|+..++ +|++
T Consensus 190 ~~~~~~LVl~a~~~~~~~~~~----~~f~~~---~-~~~g~IlTKlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~ 255 (272)
T TIGR00064 190 APDEVLLVLDATTGQNALEQA----KVFNEA---V-GLTGIILTKLDGTAK----GGIILSIAYELKLPIKFIG--VGEK 255 (272)
T ss_pred CCceEEEEEECCCCHHHHHHH----HHHHhh---C-CCCEEEEEccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCC
Confidence 37999999999753 333333 222211 1 245677899997432 2334556667789988887 8888
Q ss_pred HHHHHH
Q psy5810 198 TDELLV 203 (250)
Q Consensus 198 I~~lf~ 203 (250)
++++-.
T Consensus 256 ~~dl~~ 261 (272)
T TIGR00064 256 IDDLAP 261 (272)
T ss_pred hHhCcc
Confidence 766543
No 355
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.52 E-value=0.0001 Score=57.53 Aligned_cols=24 Identities=8% Similarity=0.038 Sum_probs=20.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~ 75 (250)
...++++|.+|||||||+| .+.+.
T Consensus 100 ~~~~~~~G~~~~GKstlin-~l~~~ 123 (155)
T cd01849 100 SITVGVIGYPNVGKSSVIN-ALLNK 123 (155)
T ss_pred CcEEEEEccCCCCHHHHHH-HHHcc
Confidence 4559999999999999999 77763
No 356
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.45 E-value=0.0019 Score=55.45 Aligned_cols=89 Identities=18% Similarity=0.103 Sum_probs=65.9
Q ss_pred CCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 119 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 119 ~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
+.|-.++|+.+.+|+ +..-+..++--. ...++..+++.||.|+.+......++........|.+.+.+|++++.+
T Consensus 79 n~d~~iiIvs~~~P~~~~~~ldR~Lv~a----e~~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~ 154 (301)
T COG1162 79 NNDQAIIVVSLVDPDFNTNLLDRYLVLA----EAGGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDG 154 (301)
T ss_pred ccceEEEEEeccCCCCCHHHHHHHHHHH----HHcCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCccc
Confidence 678888888888875 666666665544 236777788899999965333222455667777899999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy5810 198 TDELLVGIARQAGL 211 (250)
Q Consensus 198 I~~lf~~l~~~i~~ 211 (250)
+.++...+...+.-
T Consensus 155 ~~~l~~~l~~~~sv 168 (301)
T COG1162 155 LEELAELLAGKITV 168 (301)
T ss_pred HHHHHHHhcCCeEE
Confidence 99999988865443
No 357
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.00055 Score=61.21 Aligned_cols=100 Identities=16% Similarity=0.134 Sum_probs=60.3
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccC-----------------------ce-----------eEEEEEeCCCC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHP-----------------------DV-----------FFIVYSDTNHT 98 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~-----------------------~~-----------~~i~i~Dt~g~ 98 (250)
.++||-.|.+|||||....++.+ ......|. .+ ..+.+.||||.
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfG--gaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH 91 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFG--GAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH 91 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhc--chhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence 38999999999999997333331 11111111 11 05678999997
Q ss_pred ccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 99 QRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
+..--.. |+ ... -+|.++.|+|....-.-+.++ +-++.+ ..++||+-..||.|.+.
T Consensus 92 eDFSEDT-YR----tLt---AvDsAvMVIDaAKGiE~qT~K--LfeVcr---lR~iPI~TFiNKlDR~~ 147 (528)
T COG4108 92 EDFSEDT-YR----TLT---AVDSAVMVIDAAKGIEPQTLK--LFEVCR---LRDIPIFTFINKLDREG 147 (528)
T ss_pred cccchhH-HH----HHH---hhheeeEEEecccCccHHHHH--HHHHHh---hcCCceEEEeecccccc
Confidence 6322111 22 111 589999999987743322221 122333 36899999999999754
No 358
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.43 E-value=0.001 Score=59.50 Aligned_cols=140 Identities=17% Similarity=0.121 Sum_probs=84.3
Q ss_pred EEEEcCCCCchhhhchhhhcccccc-------ccccccCcee-------EEEEEeCCCCccccCCCccccccccccccCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN-------FVQTYHPDVF-------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~-------~~~~~~~~~~-------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ 119 (250)
|+..|.=--|||||+. .+.+.... -..|++..+. .+.+.|++|.++.+..+..- . -.
T Consensus 3 i~t~GhidHgkT~L~~-altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag-----~---~~ 73 (447)
T COG3276 3 IGTAGHIDHGKTTLLK-ALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAG-----L---GG 73 (447)
T ss_pred EEEeeeeeccchhhhh-hhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhh-----h---cC
Confidence 6777888889999996 77664111 1111121111 45578888876443322211 0 15
Q ss_pred CcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh---CCeEEEEecC
Q psy5810 120 PDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW---GVKFVETSVG 193 (250)
Q Consensus 120 ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~---~~~~~evSa~ 193 (250)
.|.++||.|.++ +++-+.+. .++.+ .-.-.++|.+|+|..++..+ .+...+..... +.+++.+|+.
T Consensus 74 ~d~alLvV~~deGl~~qtgEhL~-iLdll------gi~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~ 145 (447)
T COG3276 74 IDYALLVVAADEGLMAQTGEHLL-ILDLL------GIKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAK 145 (447)
T ss_pred CceEEEEEeCccCcchhhHHHHH-HHHhc------CCCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccc
Confidence 799999999965 34444432 12211 23346889999998653211 12222222222 3568999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy5810 194 LVYKTDELLVGIARQAG 210 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~ 210 (250)
+|.||+++-+.|...+.
T Consensus 146 ~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 146 TGRGIEELKNELIDLLE 162 (447)
T ss_pred cCCCHHHHHHHHHHhhh
Confidence 99999999999998774
No 359
>KOG1143|consensus
Probab=97.41 E-value=0.0024 Score=56.13 Aligned_cols=80 Identities=20% Similarity=0.099 Sum_probs=50.3
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC------------------------ccCHH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR------------------------QVTHS 174 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------------------~v~~~ 174 (250)
..|.+++|.+......+.. ++-+-.+.. -++|+.++.+|.|+.... .-+.+
T Consensus 274 ~Ph~A~LvVsA~~Gi~~tT-rEHLgl~~A----L~iPfFvlvtK~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~d 348 (591)
T KOG1143|consen 274 TPHFACLVVSADRGITWTT-REHLGLIAA----LNIPFFVLVTKMDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKD 348 (591)
T ss_pred CCceEEEEEEcCCCCcccc-HHHHHHHHH----hCCCeEEEEEeeccccchhHHHHHHHHHHHHhhcCccccceEeechH
Confidence 4788999998877654432 222233322 489999999999995431 12233
Q ss_pred HHHHHHHHh----CCeEEEEecCCCCCHHHHHH
Q psy5810 175 DGKKLAYAW----GVKFVETSVGLVYKTDELLV 203 (250)
Q Consensus 175 ~~~~~~~~~----~~~~~evSa~~~~~I~~lf~ 203 (250)
++..-+++. -.|++.+|+.+|++++-+-.
T Consensus 349 dAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~ 381 (591)
T KOG1143|consen 349 DAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRT 381 (591)
T ss_pred HHHHHHHHhccCCceeEEEEeecCccchhHHHH
Confidence 443333332 35789999999999765433
No 360
>PRK12288 GTPase RsgA; Reviewed
Probab=97.40 E-value=0.00011 Score=65.06 Aligned_cols=21 Identities=10% Similarity=0.129 Sum_probs=19.2
Q ss_pred EEEEcCCCCchhhhchhhhccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~ 75 (250)
++++|.+||||||||| ++.+.
T Consensus 208 ~~~vG~sgVGKSTLiN-~Ll~~ 228 (347)
T PRK12288 208 SIFVGQSGVGKSSLIN-ALLPE 228 (347)
T ss_pred EEEECCCCCCHHHHHH-Hhccc
Confidence 8999999999999999 78764
No 361
>KOG0099|consensus
Probab=97.40 E-value=0.00041 Score=58.14 Aligned_cols=66 Identities=21% Similarity=0.357 Sum_probs=46.3
Q ss_pred EEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHHhhhCCCCCcEE
Q psy5810 90 IVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLWDSKYIGEKAVI 157 (250)
Q Consensus 90 i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~~~~~~~~~pii 157 (250)
+..+|.+||. +.-|-..+. +..++|+|...+.- .-+.+....++.+++.+-...+.+|
T Consensus 204 FhMfDVGGQRDeRrKWIQcFn----------dvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvI 273 (379)
T KOG0099|consen 204 FHMFDVGGQRDERRKWIQCFN----------DVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVI 273 (379)
T ss_pred eeeeccCCchhhhhhHHHHhc----------CccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhhee
Confidence 3458888884 666777777 88999999776542 2334444456666665555678899
Q ss_pred EEeeCCCc
Q psy5810 158 LVANKADL 165 (250)
Q Consensus 158 lv~nK~Dl 165 (250)
|..||.|+
T Consensus 274 lFLNKqDl 281 (379)
T KOG0099|consen 274 LFLNKQDL 281 (379)
T ss_pred EEecHHHH
Confidence 99999998
No 362
>KOG4273|consensus
Probab=97.37 E-value=0.00086 Score=55.86 Aligned_cols=144 Identities=15% Similarity=0.175 Sum_probs=82.9
Q ss_pred EEEEcCCCC--chhhhchhhhccccccccccccCc-eeEEEEEeCCCCc---------cccCCCccccccccccccCCCc
Q psy5810 54 FIVHSDTNH--TQRCLTSMPFCSQVENFVQTYHPD-VFFIVYSDTNHTQ---------RCLTPMPFCSQVENFVQTYHPD 121 (250)
Q Consensus 54 i~iiG~~~v--GKSsLi~~~~~~~~~~~~~~~~~~-~~~i~i~Dt~g~~---------~~~~~~~~~~~~~~~~~~~~ad 121 (250)
++++|-+|| ||-+|+. ++.. ..|....... -..+.=|-....+ ..+...++.-..+... ...
T Consensus 7 ~lv~g~sgvfsg~~~ll~-rl~s--~dfed~ses~~~te~hgwtid~kyysadi~lcishicde~~lpn~~~a~---pl~ 80 (418)
T KOG4273|consen 7 ALVTGCSGVFSGDQLLLH-RLGS--EDFEDESESNDATEFHGWTIDNKYYSADINLCISHICDEKFLPNAEIAE---PLQ 80 (418)
T ss_pred EEEecccccccchHHHHH-Hhcc--hhheeeccccCceeeeceEecceeeecceeEEeecccchhccCCccccc---cee
Confidence 789999999 9999997 7776 3333221111 1111112111110 1111111111111111 468
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCC-CcEEEEeeCCCccCC------------------C---------c---
Q psy5810 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGE-KAVILVANKADLERR------------------R---------Q--- 170 (250)
Q Consensus 122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~-~piilv~nK~Dl~~~------------------~---------~--- 170 (250)
++++|||++....+..++.|+.-. ..+. -.++-+|||.|.... | .
T Consensus 81 a~vmvfdlse~s~l~alqdwl~ht----dinsfdillcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgise 156 (418)
T KOG4273|consen 81 AFVMVFDLSEKSGLDALQDWLPHT----DINSFDILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISE 156 (418)
T ss_pred eEEEEEeccchhhhHHHHhhcccc----ccccchhheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccccc
Confidence 899999999999999999997743 1122 235678899985210 0 0
Q ss_pred --------------cCHHHHHHHHHHhCCeEEEEecCCC------------CCHHHHHHHHHH
Q psy5810 171 --------------VTHSDGKKLAYAWGVKFVETSVGLV------------YKTDELLVGIAR 207 (250)
Q Consensus 171 --------------v~~~~~~~~~~~~~~~~~evSa~~~------------~~I~~lf~~l~~ 207 (250)
.....+.+||.++|+.++|.+|.+. .|++.+|..|-.
T Consensus 157 tegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~a 219 (418)
T KOG4273|consen 157 TEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNA 219 (418)
T ss_pred cccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhh
Confidence 1123467889999999999999542 356777766654
No 363
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.35 E-value=0.00079 Score=60.59 Aligned_cols=109 Identities=13% Similarity=0.101 Sum_probs=75.8
Q ss_pred EEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHHhhhCCCCCcEE
Q psy5810 90 IVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLWDSKYIGEKAVI 157 (250)
Q Consensus 90 i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~~~~~~~~~pii 157 (250)
+.++|++||. +.-|..++. +++++|+|.++++- ..+.+....++.+.....-.+.|++
T Consensus 238 ~~~~DvGGqr~eRkKW~~~F~----------~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~ii 307 (389)
T PF00503_consen 238 FRLIDVGGQRSERKKWIHCFE----------DVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPII 307 (389)
T ss_dssp EEEEEETSSGGGGGGGGGGGT----------TESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEE
T ss_pred cceecCCCCchhhhhHHHHhc----------cccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceE
Confidence 4689999985 778888888 89999999997642 2345555666777665555689999
Q ss_pred EEeeCCCcc------CC----------Cc--cCHHHHHHHHHHh------------CCeEEEEecCCCCCHHHHHHHHHH
Q psy5810 158 LVANKADLE------RR----------RQ--VTHSDGKKLAYAW------------GVKFVETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 158 lv~nK~Dl~------~~----------~~--v~~~~~~~~~~~~------------~~~~~evSa~~~~~I~~lf~~l~~ 207 (250)
|+.||.|+= .. .. -+.+.+..+.... .+.+..++|.+..++..+|+.+.+
T Consensus 308 l~lnK~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~ 387 (389)
T PF00503_consen 308 LFLNKIDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKD 387 (389)
T ss_dssp EEEE-HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHH
T ss_pred EeeecHHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcC
Confidence 999999971 11 01 2345555554321 113568999999999999988875
Q ss_pred H
Q psy5810 208 Q 208 (250)
Q Consensus 208 ~ 208 (250)
.
T Consensus 388 ~ 388 (389)
T PF00503_consen 388 I 388 (389)
T ss_dssp H
T ss_pred c
Confidence 4
No 364
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.30 E-value=0.00038 Score=66.65 Aligned_cols=100 Identities=15% Similarity=-0.022 Sum_probs=61.6
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccc--c----------------ccCce------------eEEEEEeCCCCcccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQ--T----------------YHPDV------------FFIVYSDTNHTQRCL 102 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~--~----------------~~~~~------------~~i~i~Dt~g~~~~~ 102 (250)
.|.|+|.-.+|||||.. +++...+.... . -|.|+ ..+.+.||||.-...
T Consensus 12 NigI~aHidaGKTTltE-~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDFt 90 (697)
T COG0480 12 NIGIVAHIDAGKTTLTE-RILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDFT 90 (697)
T ss_pred EEEEEeccCCChHHHHH-HHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCccccH
Confidence 49999999999999998 54332111110 0 01111 156688999863111
Q ss_pred CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
.|...+++-+|++|+|+|....-..+.-.-|.. ....++|.+++.||.|..
T Consensus 91 --------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq-----a~~~~vp~i~fiNKmDR~ 141 (697)
T COG0480 91 --------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ-----ADKYGVPRILFVNKMDRL 141 (697)
T ss_pred --------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHH-----HhhcCCCeEEEEECcccc
Confidence 111222226899999999987644443333433 233689999999999963
No 365
>PRK12289 GTPase RsgA; Reviewed
Probab=97.30 E-value=0.00019 Score=63.59 Aligned_cols=21 Identities=10% Similarity=0.145 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhhhchhhhccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~ 75 (250)
++|+|.+||||||||| .+...
T Consensus 175 ~v~iG~SgVGKSSLIN-~L~~~ 195 (352)
T PRK12289 175 TVVAGPSGVGKSSLIN-RLIPD 195 (352)
T ss_pred EEEEeCCCCCHHHHHH-HHcCc
Confidence 8999999999999999 77764
No 366
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.28 E-value=0.00017 Score=60.80 Aligned_cols=22 Identities=5% Similarity=0.095 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhhhchhhhccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~ 75 (250)
.++++|.+|||||||+| ++.+.
T Consensus 122 ~~~~~G~sgvGKStLiN-~L~~~ 143 (245)
T TIGR00157 122 ISVFAGQSGVGKSSLIN-ALDPS 143 (245)
T ss_pred EEEEECCCCCCHHHHHH-HHhhh
Confidence 38999999999999999 77764
No 367
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.26 E-value=0.0011 Score=55.10 Aligned_cols=80 Identities=10% Similarity=-0.019 Sum_probs=45.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccccc--ccccCce---------------eEEEEEeCCCCccccCCC-cccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV--QTYHPDV---------------FFIVYSDTNHTQRCLTPM-PFCSQV 111 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~--~~~~~~~---------------~~i~i~Dt~g~~~~~~~~-~~~~~~ 111 (250)
...-|.|+|++++|||+|+| ++.+....|. ++..++. ..+.+.||+|....-... .+..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN-~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~-- 82 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLN-HLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA-- 82 (224)
T ss_pred CEEEEEEECCCCCCHHHHHH-HHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh--
Confidence 34459999999999999999 7777411322 1111111 256788999975322211 1110
Q ss_pred ccccccC--CCcEEEEEEeCCCHH
Q psy5810 112 ENFVQTY--HPDVFVIVYSVIERK 133 (250)
Q Consensus 112 ~~~~~~~--~ad~iilV~D~~~~~ 133 (250)
...++. -++++|+..+.....
T Consensus 83 -~~~~l~~llss~~i~n~~~~~~~ 105 (224)
T cd01851 83 -RLFALATLLSSVLIYNSWETILG 105 (224)
T ss_pred -HHHHHHHHHhCEEEEeccCcccH
Confidence 111111 268888777765543
No 368
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.26 E-value=0.00021 Score=63.59 Aligned_cols=21 Identities=19% Similarity=0.045 Sum_probs=19.2
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++++|.+|||||||+| ++..
T Consensus 156 ~v~~vG~~nvGKStliN-~l~~ 176 (360)
T TIGR03597 156 DVYVVGVTNVGKSSLIN-KLLK 176 (360)
T ss_pred eEEEECCCCCCHHHHHH-HHHh
Confidence 59999999999999999 7766
No 369
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.26 E-value=0.0019 Score=58.52 Aligned_cols=89 Identities=12% Similarity=0.086 Sum_probs=44.6
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
++.+.||+|........ ...........+++.++||.|.+-...-. .....+.+ .-.+--+|.||.|....
T Consensus 184 DvViIDTaGr~~~d~~l--m~El~~i~~~~~p~e~lLVlda~~Gq~a~---~~a~~F~~----~~~~~g~IlTKlD~~ar 254 (429)
T TIGR01425 184 DIIIVDTSGRHKQEDSL--FEEMLQVAEAIQPDNIIFVMDGSIGQAAE---AQAKAFKD----SVDVGSVIITKLDGHAK 254 (429)
T ss_pred CEEEEECCCCCcchHHH--HHHHHHHhhhcCCcEEEEEeccccChhHH---HHHHHHHh----ccCCcEEEEECccCCCC
Confidence 56789999964211111 01111111222678999999987542221 11222211 12356677899997432
Q ss_pred CccCHHHHHHHHHHhCCeEEEE
Q psy5810 169 RQVTHSDGKKLAYAWGVKFVET 190 (250)
Q Consensus 169 ~~v~~~~~~~~~~~~~~~~~ev 190 (250)
- -.+.......+.|+..+
T Consensus 255 g----G~aLs~~~~t~~PI~fi 272 (429)
T TIGR01425 255 G----GGALSAVAATKSPIIFI 272 (429)
T ss_pred c----cHHhhhHHHHCCCeEEE
Confidence 1 12334445567775444
No 370
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.25 E-value=0.00055 Score=60.72 Aligned_cols=71 Identities=11% Similarity=-0.025 Sum_probs=45.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccc-c----ccccccCcee------------------------EEEEEeCCCCcc--
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVE-N----FVQTYHPDVF------------------------FIVYSDTNHTQR-- 100 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~-~----~~~~~~~~~~------------------------~i~i~Dt~g~~~-- 100 (250)
+|+.|+|.||||||||++ .+++... . ...|+.|..+ .+.+.|.||--+
T Consensus 3 lk~GivGlPn~GKSTlfn-aLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFA-ATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHH-HHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 679999999999999998 7877533 2 1123344443 356778888532
Q ss_pred ----ccCCCccccccccccccCCCcEEEEEEeCC
Q psy5810 101 ----CLTPMPFCSQVENFVQTYHPDVFVIVYSVI 130 (250)
Q Consensus 101 ----~~~~~~~~~~~~~~~~~~~ad~iilV~D~~ 130 (250)
.+...++. -++.+|++++|.|..
T Consensus 82 s~g~Glgn~fL~-------~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLA-------NIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHH-------HHHhCCEEEEEEeCC
Confidence 22222222 122799999999874
No 371
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.23 E-value=0.0027 Score=55.71 Aligned_cols=23 Identities=4% Similarity=0.141 Sum_probs=20.3
Q ss_pred EEEEEEcCCCCchhhhchhhhccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~ 75 (250)
+.|+++|.+|.|||||+| .+++.
T Consensus 24 f~im~~G~sG~GKttfiN-tL~~~ 46 (373)
T COG5019 24 FTIMVVGESGLGKTTFIN-TLFGT 46 (373)
T ss_pred eEEEEecCCCCchhHHHH-hhhHh
Confidence 459999999999999999 77764
No 372
>KOG0447|consensus
Probab=97.22 E-value=0.005 Score=56.66 Aligned_cols=89 Identities=15% Similarity=0.170 Sum_probs=54.1
Q ss_pred EEEEEeCCCCccccCCCc-------cccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810 89 FIVYSDTNHTQRCLTPMP-------FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~-------~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n 161 (250)
+..+.|.||.....+... ...+-..|++ +.+++|+|+.=. |.+.-+.....+....++.+.-.|+|.+
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~--NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLT 487 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQ--NPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLT 487 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhc--CCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEe
Confidence 445688888643322221 1223334555 899999997422 2222222333444445666788999999
Q ss_pred CCCccCCCccCHHHHHHHHHH
Q psy5810 162 KADLERRRQVTHSDGKKLAYA 182 (250)
Q Consensus 162 K~Dl~~~~~v~~~~~~~~~~~ 182 (250)
|.|+.+...-+++.+++....
T Consensus 488 KVDlAEknlA~PdRI~kIleG 508 (980)
T KOG0447|consen 488 KVDLAEKNVASPSRIQQIIEG 508 (980)
T ss_pred ecchhhhccCCHHHHHHHHhc
Confidence 999977666778877776653
No 373
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.00061 Score=68.31 Aligned_cols=109 Identities=15% Similarity=0.019 Sum_probs=62.5
Q ss_pred EEEEcCCCCchhhhchhhhcccccccc--------cccc---Cce---eEEEEEeCCCCcccc----------CCCcccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFV--------QTYH---PDV---FFIVYSDTNHTQRCL----------TPMPFCS 109 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~--------~~~~---~~~---~~i~i~Dt~g~~~~~----------~~~~~~~ 109 (250)
.+|||++|+||||++. -.+....+. ...+ .+- +.-.+.||+|.+... |..++ .
T Consensus 128 y~viG~pgsGKTtal~--~sgl~Fpl~~~~~~~~~~~~gT~~cdwwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL-~ 204 (1188)
T COG3523 128 YMVIGPPGSGKTTALL--NSGLQFPLAEQMGALGLAGPGTRNCDWWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFL-G 204 (1188)
T ss_pred eEEecCCCCCcchHHh--cccccCcchhhhccccccCCCCcccCcccccceEEEcCCcceecccCcchhhHHHHHHHH-H
Confidence 8999999999999994 233111111 1111 000 144567999976222 11111 1
Q ss_pred ccccccccCCCcEEEEEEeCCCHH----hH-----HHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 110 QVENFVQTYHPDVFVIVYSVIERK----TF-----KKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 110 ~~~~~~~~~~ad~iilV~D~~~~~----Sf-----~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
....+...+..+|+|+..|+.+-- .. ..++.=+.++.+. -....|+.|+.||.|+-
T Consensus 205 lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~t-L~~~~PVYl~lTk~Dll 269 (1188)
T COG3523 205 LLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRET-LHARLPVYLVLTKADLL 269 (1188)
T ss_pred HHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHh-hccCCceEEEEeccccc
Confidence 223344444789999999986531 11 1233334555433 23578999999999984
No 374
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.13 E-value=0.00074 Score=52.96 Aligned_cols=20 Identities=5% Similarity=-0.001 Sum_probs=17.2
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|..|+|||||++ ++..
T Consensus 3 ~~l~G~~GsGKTtl~~-~l~~ 22 (158)
T cd03112 3 TVLTGFLGAGKTTLLN-HILT 22 (158)
T ss_pred EEEEECCCCCHHHHHH-HHHh
Confidence 6899999999999997 6554
No 375
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.13 E-value=0.0014 Score=53.31 Aligned_cols=66 Identities=18% Similarity=0.132 Sum_probs=37.3
Q ss_pred CCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 119 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 119 ~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
..+-+++|.|.+-.. ..+.+.... +. -+ +-=+|.+|.|... ..-.+..++...+.|+-.++ +|.+
T Consensus 113 ~~~~~~LVlsa~~~~~~~~~~~~~~----~~---~~-~~~lIlTKlDet~----~~G~~l~~~~~~~~Pi~~it--~Gq~ 178 (196)
T PF00448_consen 113 NPDEVHLVLSATMGQEDLEQALAFY----EA---FG-IDGLILTKLDETA----RLGALLSLAYESGLPISYIT--TGQR 178 (196)
T ss_dssp SSSEEEEEEEGGGGGHHHHHHHHHH----HH---SS-TCEEEEESTTSSS----TTHHHHHHHHHHTSEEEEEE--SSSS
T ss_pred CCccceEEEecccChHHHHHHHHHh----hc---cc-CceEEEEeecCCC----CcccceeHHHHhCCCeEEEE--CCCC
Confidence 467888888887643 333222221 11 11 2234579999643 23456677788888865553 4444
Q ss_pred H
Q psy5810 198 T 198 (250)
Q Consensus 198 I 198 (250)
|
T Consensus 179 V 179 (196)
T PF00448_consen 179 V 179 (196)
T ss_dssp T
T ss_pred h
Confidence 4
No 376
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0022 Score=54.80 Aligned_cols=148 Identities=14% Similarity=0.111 Sum_probs=84.4
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhccc--------c------c--cccccccCcee-----------EEEEEeCCCCc
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQ--------V------E--NFVQTYHPDVF-----------FIVYSDTNHTQ 99 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~--------~------~--~~~~~~~~~~~-----------~i~i~Dt~g~~ 99 (250)
...-+++|..||.-.-|||||.. .+... . + .-....|.++. ..--.|.+|.-
T Consensus 8 r~kphVNigtiGHvdHGKTTLta-Ait~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHa 86 (394)
T COG0050 8 RTKPHVNVGTIGHVDHGKTTLTA-AITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHA 86 (394)
T ss_pred CCCCeeEEEEeccccCchhhHHH-HHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChH
Confidence 34456789999999999999985 43321 0 0 00111222222 22234666543
Q ss_pred cccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCc---cC
Q psy5810 100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQ---VT 172 (250)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~---v~ 172 (250)
.|.++|+.... +.|+.|||.+.++ |++-+.+. +.++ -.+| ++++.||+|+.+++. +-
T Consensus 87 -----DYvKNMItgAa---qmDgAILVVsA~dGpmPqTrEHiL-----larq---vGvp~ivvflnK~Dmvdd~ellelV 150 (394)
T COG0050 87 -----DYVKNMITGAA---QMDGAILVVAATDGPMPQTREHIL-----LARQ---VGVPYIVVFLNKVDMVDDEELLELV 150 (394)
T ss_pred -----HHHHHHhhhHH---hcCccEEEEEcCCCCCCcchhhhh-----hhhh---cCCcEEEEEEecccccCcHHHHHHH
Confidence 22333333222 5899999999998 45554432 2122 3565 777889999865433 23
Q ss_pred HHHHHHHHHHhCC-----eEEEEecCCCC--------CHHHHHHHHHHHHHh
Q psy5810 173 HSDGKKLAYAWGV-----KFVETSVGLVY--------KTDELLVGIARQAGL 211 (250)
Q Consensus 173 ~~~~~~~~~~~~~-----~~~evSa~~~~--------~I~~lf~~l~~~i~~ 211 (250)
..+.+.+...+++ |++.-||+..- .|.+|++.+...+..
T Consensus 151 emEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 151 EMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred HHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 4567777888875 46767766532 245555555554443
No 377
>KOG1547|consensus
Probab=97.09 E-value=0.0018 Score=53.72 Aligned_cols=151 Identities=15% Similarity=0.077 Sum_probs=73.1
Q ss_pred EEEEEEEcCCCCchhhhchhhhccc------cccccccccCcee---------------EEEEEeCCCCc-----cccCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQ------VENFVQTYHPDVF---------------FIVYSDTNHTQ-----RCLTP 104 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~------~~~~~~~~~~~~~---------------~i~i~Dt~g~~-----~~~~~ 104 (250)
.+.|+++|.+|.|||||+|-.|... ...-...+..+++ ++.+.||+|-- ..-|.
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ncWe 125 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDNCWE 125 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccchhH
Confidence 3569999999999999999333221 0011112222222 56789999831 11111
Q ss_pred ---Ccccccccccc----------cc--CCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCcc--
Q psy5810 105 ---MPFCSQVENFV----------QT--YHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLE-- 166 (250)
Q Consensus 105 ---~~~~~~~~~~~----------~~--~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~-- 166 (250)
.|.+..++.|. .+ ...+++++....+- .++.-+. +.++.+.+ -+.+|-|.-|.|--
T Consensus 126 PI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~-----vvNvvPVIakaDtlTl 199 (336)
T KOG1547|consen 126 PIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE-----VVNVVPVIAKADTLTL 199 (336)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh-----hheeeeeEeecccccH
Confidence 12222222222 11 15678887776653 2333222 23333422 23456666899931
Q ss_pred CCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy5810 167 RRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 167 ~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~ 207 (250)
++|.--.+.+++-...+++.+|+--+-+...=+..++.-++
T Consensus 200 eEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~kvR 240 (336)
T KOG1547|consen 200 EERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLNDKVR 240 (336)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHHHHH
Confidence 11222223344445567777766544443333333333333
No 378
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.04 E-value=0.0026 Score=40.77 Aligned_cols=44 Identities=23% Similarity=0.283 Sum_probs=28.9
Q ss_pred CCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810 119 HPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKAD 164 (250)
Q Consensus 119 ~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~D 164 (250)
=++++++++|++... |.++-...++++.... .+.|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence 368999999998864 5666666777776653 5899999999998
No 379
>PRK13796 GTPase YqeH; Provisional
Probab=97.04 E-value=0.00052 Score=61.26 Aligned_cols=21 Identities=19% Similarity=0.021 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++++|.+||||||||| ++..
T Consensus 162 ~v~vvG~~NvGKSTLiN-~L~~ 182 (365)
T PRK13796 162 DVYVVGVTNVGKSTLIN-RIIK 182 (365)
T ss_pred eEEEEcCCCCcHHHHHH-HHHh
Confidence 59999999999999999 7764
No 380
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.00 E-value=0.012 Score=48.87 Aligned_cols=57 Identities=28% Similarity=0.335 Sum_probs=35.2
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCC-CcEEEEeeCCCccCCCccCHHHHHHHHHHhCCe
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGE-KAVILVANKADLERRRQVTHSDGKKLAYAWGVK 186 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~-~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~ 186 (250)
++|.+|.|.|.+- .|+...++. .++... -. .++.+|.||.|.. .......+.+.+.+
T Consensus 155 ~vD~vivVvDpS~-~sl~taeri-~~L~~e---lg~k~i~~V~NKv~e~------e~~~~~~~~~~~~~ 212 (255)
T COG3640 155 GVDLVIVVVDPSY-KSLRTAERI-KELAEE---LGIKRIFVVLNKVDEE------EELLRELAEELGLE 212 (255)
T ss_pred CCCEEEEEeCCcH-HHHHHHHHH-HHHHHH---hCCceEEEEEeeccch------hHHHHhhhhccCCe
Confidence 7999999999874 344443332 223222 24 6899999999953 23344555555553
No 381
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.99 E-value=0.00044 Score=59.36 Aligned_cols=21 Identities=5% Similarity=0.143 Sum_probs=19.1
Q ss_pred EEEEcCCCCchhhhchhhhccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~ 75 (250)
.+++|.+|||||||+| ++..+
T Consensus 167 svl~GqSGVGKSSLiN-~L~p~ 187 (301)
T COG1162 167 TVLLGQSGVGKSTLIN-ALLPE 187 (301)
T ss_pred EEEECCCCCcHHHHHH-hhCch
Confidence 8999999999999999 77764
No 382
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0065 Score=54.24 Aligned_cols=75 Identities=8% Similarity=-0.013 Sum_probs=38.2
Q ss_pred CCcEEEEEEeCCC-HHhHHHHHHHHHHHHhhhCCC-CCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 119 HPDVFVIVYSVIE-RKTFKKAEDMLKTLWDSKYIG-EKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 119 ~ad~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
.+.-.++|.+.+. .+..+++-.-+.......... ..+-=+|.||.|... ..-.+..++...++|+..++ +|.
T Consensus 245 ~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~----~~G~~l~~~~~~~lPi~yvt--~Gq 318 (374)
T PRK14722 245 TPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS----NLGGVLDTVIRYKLPVHYVS--TGQ 318 (374)
T ss_pred CCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC----CccHHHHHHHHHCcCeEEEe--cCC
Confidence 3456688888876 344444322222221100000 012345669999643 23446667777888865553 444
Q ss_pred CHH
Q psy5810 197 KTD 199 (250)
Q Consensus 197 ~I~ 199 (250)
+|.
T Consensus 319 ~VP 321 (374)
T PRK14722 319 KVP 321 (374)
T ss_pred CCC
Confidence 443
No 383
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.97 E-value=0.0083 Score=53.09 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.3
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..++-|.+.|.-+.|||||+- .+..
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG-~Lvt 139 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVG-VLVT 139 (527)
T ss_pred CceEEEEEeccccCCcceEEE-EEEe
Confidence 356779999999999999997 5544
No 384
>KOG2655|consensus
Probab=96.96 E-value=0.0086 Score=52.84 Aligned_cols=22 Identities=5% Similarity=0.129 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+.++++|++|.|||||+| .+..
T Consensus 22 ftlmvvG~sGlGKsTfiN-sLf~ 43 (366)
T KOG2655|consen 22 FTLMVVGESGLGKSTFIN-SLFL 43 (366)
T ss_pred eEEEEecCCCccHHHHHH-HHHh
Confidence 569999999999999999 5544
No 385
>PRK00098 GTPase RsgA; Reviewed
Probab=96.95 E-value=0.00065 Score=58.95 Aligned_cols=21 Identities=5% Similarity=0.169 Sum_probs=18.9
Q ss_pred EEEEcCCCCchhhhchhhhccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~ 75 (250)
++++|.+|||||||+| .+.+.
T Consensus 167 ~~~~G~sgvGKStlin-~l~~~ 187 (298)
T PRK00098 167 TVLAGQSGVGKSTLLN-ALAPD 187 (298)
T ss_pred EEEECCCCCCHHHHHH-HHhCC
Confidence 9999999999999998 77763
No 386
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.94 E-value=0.0043 Score=56.60 Aligned_cols=90 Identities=11% Similarity=0.098 Sum_probs=46.0
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCC-cEEEEeeCCCccC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-AVILVANKADLER 167 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~-piilv~nK~Dl~~ 167 (250)
++.+.||+|........ ........++..+|.+++|.|.+... +..+....+. ... ..-+|.||.|...
T Consensus 177 DvVIIDTAGr~~~d~~l--m~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~-----~~l~i~gvIlTKlD~~a 246 (437)
T PRK00771 177 DVIIVDTAGRHALEEDL--IEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFH-----EAVGIGGIIITKLDGTA 246 (437)
T ss_pred CEEEEECCCcccchHHH--HHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHH-----hcCCCCEEEEecccCCC
Confidence 56788999864211000 00001111112579999999987642 1212222221 112 2356679999643
Q ss_pred CCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 168 RRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 168 ~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
. .-.+...+...+.|+..++.
T Consensus 247 ~----~G~~ls~~~~~~~Pi~fig~ 267 (437)
T PRK00771 247 K----GGGALSAVAETGAPIKFIGT 267 (437)
T ss_pred c----ccHHHHHHHHHCcCEEEEec
Confidence 1 12355566677888655543
No 387
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.92 E-value=0.0036 Score=56.69 Aligned_cols=65 Identities=8% Similarity=-0.009 Sum_probs=37.7
Q ss_pred CcEEEEEEeCCC-HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 120 PDVFVIVYSVIE-RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 120 ad~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
.+-.+||.|.+- ..... +++.... .--+-=+|.||.|... ..-.+..++...++|+..+ .+|.+|
T Consensus 300 ~~~~~LVl~at~~~~~~~---~~~~~f~-----~~~~~~~I~TKlDEt~----~~G~~l~~~~~~~lPi~yv--t~Gq~V 365 (420)
T PRK14721 300 QVKHLLLLNATSSGDTLD---EVISAYQ-----GHGIHGCIITKVDEAA----SLGIALDAVIRRKLVLHYV--TNGQKV 365 (420)
T ss_pred CceEEEEEcCCCCHHHHH---HHHHHhc-----CCCCCEEEEEeeeCCC----CccHHHHHHHHhCCCEEEE--ECCCCc
Confidence 456778888874 44333 3333331 1123345679999643 2344666778888886555 356666
No 388
>KOG1487|consensus
Probab=96.91 E-value=0.0093 Score=50.15 Aligned_cols=79 Identities=9% Similarity=-0.078 Sum_probs=45.6
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCce-----------eEEEEEeCCCCcccc--CCCccccccccccccC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-----------FFIVYSDTNHTQRCL--TPMPFCSQVENFVQTY 118 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-----------~~i~i~Dt~g~~~~~--~~~~~~~~~~~~~~~~ 118 (250)
.++-++|-|.+||||++. .+.+.........+.+. .++++.|.+|.-+.- ....-+..+. .+|
T Consensus 60 a~vg~vgFPSvGksTl~~-~l~g~~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia---var 135 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLS-KLTGTFSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA---VAR 135 (358)
T ss_pred eeeeEEecCccchhhhhh-hhcCCCCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEE---Eee
Confidence 359999999999999997 77764222111111111 178888988853111 1111111111 122
Q ss_pred CCcEEEEEEeCCCHHh
Q psy5810 119 HPDVFVIVYSVIERKT 134 (250)
Q Consensus 119 ~ad~iilV~D~~~~~S 134 (250)
.++.+++|.|+-.|-+
T Consensus 136 tcnli~~vld~~kp~~ 151 (358)
T KOG1487|consen 136 TCNLIFIVLDVLKPLS 151 (358)
T ss_pred cccEEEEEeeccCccc
Confidence 6888999988876644
No 389
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.0055 Score=56.85 Aligned_cols=64 Identities=9% Similarity=0.078 Sum_probs=38.1
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
..++|.+.+- +..++...++.+.. ..+.-+|.||.|... ..-.+.......++++..++ +|.+|
T Consensus 460 a~lLVLpAts--s~~Dl~eii~~f~~-----~~~~gvILTKlDEt~----~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 460 TSLLVLPANA--HFSDLDEVVRRFAH-----AKPQGVVLTKLDETG----RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred CcEEEEECCC--ChhHHHHHHHHHHh-----hCCeEEEEecCcCcc----chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 4566666653 34444444444422 235678899999632 33556667778888866553 45565
No 390
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.88 E-value=0.0061 Score=55.45 Aligned_cols=91 Identities=16% Similarity=0.121 Sum_probs=47.3
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
++.+.||+|....- .........+......+.+++|.|.+..+ +...+...+... -+ ..=+|.||.|....
T Consensus 184 DvVIIDTaGr~~~d--~~l~~eL~~i~~~~~p~e~lLVvda~tgq---~~~~~a~~f~~~---v~-i~giIlTKlD~~~~ 254 (428)
T TIGR00959 184 DVVIVDTAGRLQID--EELMEELAAIKEILNPDEILLVVDAMTGQ---DAVNTAKTFNER---LG-LTGVVLTKLDGDAR 254 (428)
T ss_pred CEEEEeCCCccccC--HHHHHHHHHHHHhhCCceEEEEEeccchH---HHHHHHHHHHhh---CC-CCEEEEeCccCccc
Confidence 56788999953110 00000011111111578999999987542 333333333221 12 23556799995331
Q ss_pred CccCHHHHHHHHHHhCCeEEEEec
Q psy5810 169 RQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 169 ~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
.-.+...+...++|+..++.
T Consensus 255 ----~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 ----GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ----ccHHHHHHHHHCcCEEEEeC
Confidence 22366677778888665544
No 391
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=96.84 E-value=0.00081 Score=58.03 Aligned_cols=22 Identities=5% Similarity=0.081 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhhhchhhhccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~ 75 (250)
.++++|.+|||||||+| .+.+.
T Consensus 163 ~~~~~G~sg~GKSTlin-~l~~~ 184 (287)
T cd01854 163 TSVLVGQSGVGKSTLIN-ALLPD 184 (287)
T ss_pred eEEEECCCCCCHHHHHH-HHhch
Confidence 49999999999999998 77763
No 392
>PRK10867 signal recognition particle protein; Provisional
Probab=96.82 E-value=0.0057 Score=55.68 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=35.1
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
.++.+++|.|.+..+ ++.+....+.+. -++ .-+|.||.|..... -.+...+...+.|+..++.
T Consensus 213 ~p~evllVlda~~gq---~av~~a~~F~~~---~~i-~giIlTKlD~~~rg----G~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 213 NPDEILLVVDAMTGQ---DAVNTAKAFNEA---LGL-TGVILTKLDGDARG----GAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred CCCeEEEEEecccHH---HHHHHHHHHHhh---CCC-CEEEEeCccCcccc----cHHHHHHHHHCcCEEEEeC
Confidence 468889999986532 222333333211 122 34556999964321 2256667777888655544
No 393
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.75 E-value=0.013 Score=52.47 Aligned_cols=94 Identities=12% Similarity=0.068 Sum_probs=48.4
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLER 167 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 167 (250)
++.+.||+|.-..- ..+...++++.......-..||++.+-.. +++.+.++.+ ...| --++.||.|..
T Consensus 283 d~ILVDTaGrs~~D--~~~i~el~~~~~~~~~i~~~Lvlsat~K~--~dlkei~~~f------~~~~i~~~I~TKlDET- 351 (407)
T COG1419 283 DVILVDTAGRSQYD--KEKIEELKELIDVSHSIEVYLVLSATTKY--EDLKEIIKQF------SLFPIDGLIFTKLDET- 351 (407)
T ss_pred CEEEEeCCCCCccC--HHHHHHHHHHHhccccceEEEEEecCcch--HHHHHHHHHh------ccCCcceeEEEccccc-
Confidence 67789999953111 11111122222221234556677776532 3455555544 2233 24556999963
Q ss_pred CCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 168 RRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 168 ~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
-+.-.......+.+.|+..+ .+|.+|
T Consensus 352 ---~s~G~~~s~~~e~~~PV~Yv--T~GQ~V 377 (407)
T COG1419 352 ---TSLGNLFSLMYETRLPVSYV--TNGQRV 377 (407)
T ss_pred ---CchhHHHHHHHHhCCCeEEE--eCCCCC
Confidence 24455666667777775444 356665
No 394
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.72 E-value=0.0096 Score=53.44 Aligned_cols=97 Identities=12% Similarity=0.042 Sum_probs=48.7
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
++.+.||+|.-..... ... ...........+.++||.|.+-.. +++..++..+.. .+ +-=+|.||.|...
T Consensus 322 DvVLIDTaGRs~kd~~-lm~-EL~~~lk~~~PdevlLVLsATtk~--~d~~~i~~~F~~----~~-idglI~TKLDET~- 391 (436)
T PRK11889 322 DYILIDTAGKNYRASE-TVE-EMIETMGQVEPDYICLTLSASMKS--KDMIEIITNFKD----IH-IDGIVFTKFDETA- 391 (436)
T ss_pred CEEEEeCccccCcCHH-HHH-HHHHHHhhcCCCeEEEEECCccCh--HHHHHHHHHhcC----CC-CCEEEEEcccCCC-
Confidence 4668899986421100 000 011111111467788998875321 223333343321 11 2345679999643
Q ss_pred CccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810 169 RQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE 200 (250)
Q Consensus 169 ~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~ 200 (250)
..-.+..++...++|+..++ +|.+|.+
T Consensus 392 ---k~G~iLni~~~~~lPIsyit--~GQ~VPe 418 (436)
T PRK11889 392 ---SSGELLKIPAVSSAPIVLMT--DGQDVKK 418 (436)
T ss_pred ---CccHHHHHHHHHCcCEEEEe--CCCCCCc
Confidence 22345667778888865553 4555533
No 395
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.71 E-value=0.007 Score=42.21 Aligned_cols=95 Identities=15% Similarity=0.097 Sum_probs=50.9
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCccccC---CCccccccccccccCCCcEEEEEEeCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQRCLT---PMPFCSQVENFVQTYHPDVFVIVYSVI 130 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~~~~~---~~~~~~~~~~~~~~~~ad~iilV~D~~ 130 (250)
+++.|..|+|||++.. .+...-... ..-...+.++.+.|+++...... ..... .+|.++++.+..
T Consensus 2 ~~~~g~~G~Gktt~~~-~l~~~l~~~-g~~v~~~~d~iivD~~~~~~~~~~~~~~~~~----------~~~~vi~v~~~~ 69 (99)
T cd01983 2 IVVTGKGGVGKTTLAA-NLAAALAKR-GKRVLLIDDYVLIDTPPGLGLLVLLCLLALL----------AADLVIIVTTPE 69 (99)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHHC-CCeEEEECCEEEEeCCCCccchhhhhhhhhh----------hCCEEEEecCCc
Confidence 6788999999999985 554421110 00001111677889998763332 22223 689999998775
Q ss_pred CHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810 131 ERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 131 ~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n 161 (250)
.. +........+...........+..++.|
T Consensus 70 ~~-~~~~~~~~~~~~~~~~~~~~~~~~vv~N 99 (99)
T cd01983 70 AL-AVLGARRLTEVVLELAIEGLRPVGVVVN 99 (99)
T ss_pred hh-hHHHHHHHHHHHHHhhccCCceEEEEeC
Confidence 43 3333333322222222233445555543
No 396
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0082 Score=55.55 Aligned_cols=99 Identities=11% Similarity=0.100 Sum_probs=53.0
Q ss_pred EEEEEEcCCCCchhhhchhhhccc-c-ccccccccCce------eEEEEEeCCCCccccCCCccccccccccccCCCcEE
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQ-V-ENFVQTYHPDV------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVF 123 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~-~-~~~~~~~~~~~------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~i 123 (250)
+-++|+|++|+||||||. .++.. + .......||-. ..+.+...+. .+..+++... -||.+
T Consensus 70 fIvavvGPpGtGKsTLir-SlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~--------Dl~~miDvaK---IaDLV 137 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLIR-SLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPS--------DLHQMIDVAK---IADLV 137 (1077)
T ss_pred eEEEeecCCCCChhHHHH-HHHHHHHHhhhhccCCceEEeecceeEEEEEeChH--------HHHHHHhHHH---hhhee
Confidence 447899999999999995 55542 1 11111122211 1333333332 2222222222 58999
Q ss_pred EEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccC
Q psy5810 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLER 167 (250)
Q Consensus 124 ilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 167 (250)
+|.+|..-.-..+. .+++. |.+.+ ..| ++-|++..|+-.
T Consensus 138 lLlIdgnfGfEMET-mEFLn-il~~H---GmPrvlgV~ThlDlfk 177 (1077)
T COG5192 138 LLLIDGNFGFEMET-MEFLN-ILISH---GMPRVLGVVTHLDLFK 177 (1077)
T ss_pred EEEeccccCceehH-HHHHH-HHhhc---CCCceEEEEeeccccc
Confidence 99999865422221 12222 44443 444 677889999843
No 397
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=96.54 E-value=0.043 Score=43.41 Aligned_cols=137 Identities=13% Similarity=0.127 Sum_probs=91.9
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCc---cccCCCccccccccccccCCCcEEEEEE
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQ---RCLTPMPFCSQVENFVQTYHPDVFVIVY 127 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~---~~~~~~~~~~~~~~~~~~~~ad~iilV~ 127 (250)
...|+++|..+.++..|.. .+...... .++++. ++-.. ....+... ..|.++|++
T Consensus 15 ~atiLLVg~e~~~~~~LA~-a~l~~~~~---------~~l~Vh-~a~sLPLp~e~~~lRp-----------rIDlIVFvi 72 (176)
T PF11111_consen 15 TATILLVGTEEALLQQLAE-AMLEEDKE---------FKLKVH-LAKSLPLPSENNNLRP-----------RIDLIVFVI 72 (176)
T ss_pred eeEEEEecccHHHHHHHHH-HHHhhccc---------eeEEEE-EeccCCCcccccCCCc-----------eeEEEEEEE
Confidence 4559999999999999996 66652222 112221 11110 00001111 479999999
Q ss_pred eCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy5810 128 SVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 128 D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~ 207 (250)
|.+...|++.++.=+..+...... -.+.++++-..-.+...+...++.+++..+++|++.+.-.+.++...+-+.|++
T Consensus 73 nl~sk~SL~~ve~SL~~vd~~ffl--GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lAqRLL~ 150 (176)
T PF11111_consen 73 NLHSKYSLQSVEASLSHVDPSFFL--GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLAQRLLR 150 (176)
T ss_pred ecCCcccHHHHHHHHhhCChhhhc--cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHHHHHHH
Confidence 999999999888765555322211 235566666665566789999999999999999998888888777777777776
Q ss_pred HHHh
Q psy5810 208 QAGL 211 (250)
Q Consensus 208 ~i~~ 211 (250)
.+..
T Consensus 151 ~lqi 154 (176)
T PF11111_consen 151 MLQI 154 (176)
T ss_pred HHHH
Confidence 5543
No 398
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.53 E-value=0.0072 Score=46.87 Aligned_cols=16 Identities=6% Similarity=0.005 Sum_probs=14.9
Q ss_pred EEEEcCCCCchhhhch
Q psy5810 54 FIVHSDTNHTQRCLTS 69 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~ 69 (250)
+.++|.+|+||||++.
T Consensus 2 i~~~G~~GsGKTt~~~ 17 (148)
T cd03114 2 IGITGVPGAGKSTLID 17 (148)
T ss_pred EEEECCCCCcHHHHHH
Confidence 7899999999999986
No 399
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.48 E-value=0.015 Score=45.95 Aligned_cols=16 Identities=0% Similarity=-0.029 Sum_probs=14.6
Q ss_pred EEEEcCCCCchhhhch
Q psy5810 54 FIVHSDTNHTQRCLTS 69 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~ 69 (250)
++++|.+|+|||++..
T Consensus 3 ~~~~G~~G~GKTt~~~ 18 (173)
T cd03115 3 ILLVGLQGVGKTTTAA 18 (173)
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999974
No 400
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.47 E-value=0.0057 Score=45.80 Aligned_cols=20 Identities=5% Similarity=0.187 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|++ .+..
T Consensus 22 v~i~G~~G~GKT~l~~-~i~~ 41 (151)
T cd00009 22 LLLYGPPGTGKTTLAR-AIAN 41 (151)
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6665
No 401
>KOG0466|consensus
Probab=96.46 E-value=0.0046 Score=53.06 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=44.0
Q ss_pred CcEEEEeeCCCccCCCc--cCHHHHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 154 KAVILVANKADLERRRQ--VTHSDGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 154 ~piilv~nK~Dl~~~~~--v~~~~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
..++++-||.|+..+.+ -..++...|.+.. +.|++++||.-.+||+.+.+++++.+...
T Consensus 180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvP 243 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVP 243 (466)
T ss_pred ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCC
Confidence 45889999999854322 1234455565533 57899999999999999999999987654
No 402
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.021 Score=55.33 Aligned_cols=69 Identities=9% Similarity=-0.033 Sum_probs=38.8
Q ss_pred CCcEEEEEEeCCC-HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 119 HPDVFVIVYSVIE-RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 119 ~ad~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
..+-.+||.|.+- .+.++++-.-+..... .+ +-=+|.||.|... ..-.+..+....++|+..++ +|++
T Consensus 293 ~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~----~~-i~glIlTKLDEt~----~~G~iL~i~~~~~lPI~yit--~GQ~ 361 (767)
T PRK14723 293 RPVRRLLLLNAASHGDTLNEVVHAYRHGAG----ED-VDGCIITKLDEAT----HLGPALDTVIRHRLPVHYVS--TGQK 361 (767)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHhhccc----CC-CCEEEEeccCCCC----CccHHHHHHHHHCCCeEEEe--cCCC
Confidence 4567789999874 3445544322222100 01 2345679999643 22345667777888865553 4556
Q ss_pred H
Q psy5810 198 T 198 (250)
Q Consensus 198 I 198 (250)
|
T Consensus 362 V 362 (767)
T PRK14723 362 V 362 (767)
T ss_pred C
Confidence 5
No 403
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.37 E-value=0.019 Score=53.00 Aligned_cols=62 Identities=5% Similarity=0.011 Sum_probs=34.9
Q ss_pred EEEEEeCCC-HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 123 FVIVYSVIE-RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 123 iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
.++|.|.+- ...+.+ ....+. ... .--+|.||.|... ..-.+..++...++++..+ .+|++|
T Consensus 368 ~~LVLdAt~~~~~l~~---i~~~f~----~~~-~~g~IlTKlDet~----~~G~~l~i~~~~~lPI~yv--t~GQ~V 430 (484)
T PRK06995 368 RLLLLNATSHGDTLNE---VVQAYR----GPG-LAGCILTKLDEAA----SLGGALDVVIRYKLPLHYV--SNGQRV 430 (484)
T ss_pred eEEEEeCCCcHHHHHH---HHHHhc----cCC-CCEEEEeCCCCcc----cchHHHHHHHHHCCCeEEE--ecCCCC
Confidence 677888764 333333 222221 112 3345679999643 2345667778888886555 356666
No 404
>KOG1424|consensus
Probab=96.36 E-value=0.0029 Score=57.69 Aligned_cols=47 Identities=9% Similarity=-0.075 Sum_probs=33.2
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee--------EEEEEeCCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF--------FIVYSDTNHT 98 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~--------~i~i~Dt~g~ 98 (250)
.+.|.+||-|||||||+|| .+.+.. .....|.|.|-. .+.+.|.+|-
T Consensus 314 ~vtVG~VGYPNVGKSSTIN-aLvG~KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGL 369 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTIN-ALVGRKKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGL 369 (562)
T ss_pred eeEEEeecCCCCchhHHHH-HHhcCceeeeecCCCCcceeEEEEcCCCceecCCCCc
Confidence 3669999999999999999 888852 234455555433 3445777774
No 405
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.021 Score=50.98 Aligned_cols=68 Identities=13% Similarity=0.021 Sum_probs=36.5
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
..+.+++|.+.+. ...++...+... . .-.+--+|.||.|... ..-.+...+...+.|+..++ +|.+|
T Consensus 315 ~p~~~~LVLsag~--~~~d~~~i~~~f----~-~l~i~glI~TKLDET~----~~G~~Lsv~~~tglPIsylt--~GQ~V 381 (407)
T PRK12726 315 HPDLTCFTFSSGM--KSADVMTILPKL----A-EIPIDGFIITKMDETT----RIGDLYTVMQETNLPVLYMT--DGQNI 381 (407)
T ss_pred CCceEEEECCCcc--cHHHHHHHHHhc----C-cCCCCEEEEEcccCCC----CccHHHHHHHHHCCCEEEEe--cCCCC
Confidence 4567777777632 222233332222 1 1123456679999643 23346667778888865554 34554
Q ss_pred H
Q psy5810 199 D 199 (250)
Q Consensus 199 ~ 199 (250)
.
T Consensus 382 p 382 (407)
T PRK12726 382 T 382 (407)
T ss_pred C
Confidence 4
No 406
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.32 E-value=0.016 Score=44.24 Aligned_cols=94 Identities=12% Similarity=0.095 Sum_probs=55.3
Q ss_pred EEEcCCCCchhhhchhhhccc---c---------ccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcE
Q psy5810 55 IVHSDTNHTQRCLTSMPFCSQ---V---------ENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDV 122 (250)
Q Consensus 55 ~iiG~~~vGKSsLi~~~~~~~---~---------~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~ 122 (250)
+.-|..|+|||++.. .+... . +...+.+. .++.++|+++.........+. .+|.
T Consensus 4 ~~~~kgg~gkt~~~~-~~a~~~~~~~~~~~~vd~D~~~~~~~---yd~VIiD~p~~~~~~~~~~l~----------~aD~ 69 (139)
T cd02038 4 VTSGKGGVGKTNISA-NLALALAKLGKRVLLLDADLGLANLD---YDYIIIDTGAGISDNVLDFFL----------AADE 69 (139)
T ss_pred EEcCCCCCcHHHHHH-HHHHHHHHCCCcEEEEECCCCCCCCC---CCEEEEECCCCCCHHHHHHHH----------hCCe
Confidence 355788999999874 32221 0 00111111 367788998754322222333 6899
Q ss_pred EEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc
Q psy5810 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 165 (250)
Q Consensus 123 iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl 165 (250)
++++.+.+ ..++..+...++.+.+. ....++.+|.|+++-
T Consensus 70 vviv~~~~-~~s~~~~~~~l~~l~~~--~~~~~~~lVvN~~~~ 109 (139)
T cd02038 70 VIVVTTPE-PTSITDAYALIKKLAKQ--LRVLNFRVVVNRAES 109 (139)
T ss_pred EEEEcCCC-hhHHHHHHHHHHHHHHh--cCCCCEEEEEeCCCC
Confidence 99999885 45555555555555332 234567889999974
No 407
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.30 E-value=0.0021 Score=47.55 Aligned_cols=21 Identities=10% Similarity=0.233 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|.|.+||||||+.+ .+..
T Consensus 1 vI~I~G~~gsGKST~a~-~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAK-ELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHH-HHHH
T ss_pred CEEEECCCCCCHHHHHH-HHHH
Confidence 48999999999999996 6665
No 408
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=96.29 E-value=0.08 Score=47.77 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=51.9
Q ss_pred CcEEEEEEeC--CC--HHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 120 PDVFVIVYSV--IE--RKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 120 ad~iilV~D~--~~--~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
.-|+++--|- ++ ++++... .+.+.++.+ -+.|++++.|-.+-.. .-+.+.+.++..+++.+.+.+++..
T Consensus 146 TIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~----igKPFvillNs~~P~s--~et~~L~~eL~ekY~vpVlpvnc~~ 219 (492)
T PF09547_consen 146 TIGIVVTTDGSITDIPRENYVEAEERVIEELKE----IGKPFVILLNSTKPYS--EETQELAEELEEKYDVPVLPVNCEQ 219 (492)
T ss_pred ceeEEEecCCCccCCChHHHHHHHHHHHHHHHH----hCCCEEEEEeCCCCCC--HHHHHHHHHHHHHhCCcEEEeehHH
Confidence 4556665553 22 4555554 346777755 4789999999887432 2344556778888999998887765
Q ss_pred C--CCHHHHHHHHH
Q psy5810 195 V--YKTDELLVGIA 206 (250)
Q Consensus 195 ~--~~I~~lf~~l~ 206 (250)
- ..|..++..++
T Consensus 220 l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 220 LREEDITRILEEVL 233 (492)
T ss_pred cCHHHHHHHHHHHH
Confidence 4 34555555554
No 409
>KOG0085|consensus
Probab=96.25 E-value=0.007 Score=50.05 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=42.2
Q ss_pred CCCcEEEEeeCCCccCCC----------------ccCHHHHHHHHHHh----C-----Ce-EEEEecCCCCCHHHHHHHH
Q psy5810 152 GEKAVILVANKADLERRR----------------QVTHSDGKKLAYAW----G-----VK-FVETSVGLVYKTDELLVGI 205 (250)
Q Consensus 152 ~~~piilv~nK~Dl~~~~----------------~v~~~~~~~~~~~~----~-----~~-~~evSa~~~~~I~~lf~~l 205 (250)
.+.++|+..||.|+-+++ +-+.+.+++|..++ + +. -..++|.+.+||.-+|..+
T Consensus 265 ~nssVIlFLNKkDlLEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaV 344 (359)
T KOG0085|consen 265 QNSSVILFLNKKDLLEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAV 344 (359)
T ss_pred cCCceEEEechhhhhhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHH
Confidence 357899999999983222 23345556665443 2 11 2468899999999999998
Q ss_pred HHHHHhhh
Q psy5810 206 ARQAGLNK 213 (250)
Q Consensus 206 ~~~i~~~~ 213 (250)
-..+++..
T Consensus 345 kDtiLq~~ 352 (359)
T KOG0085|consen 345 KDTILQLN 352 (359)
T ss_pred HHHHHHhh
Confidence 88777643
No 410
>KOG0463|consensus
Probab=96.24 E-value=0.036 Score=49.04 Aligned_cols=23 Identities=9% Similarity=0.135 Sum_probs=19.9
Q ss_pred ccccEEEEEEEcCCCCchhhhch
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTS 69 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~ 69 (250)
..+-.++|+++|+-.+|||||+-
T Consensus 129 ~DF~E~RVAVVGNVDAGKSTLLG 151 (641)
T KOG0463|consen 129 KDFIEARVAVVGNVDAGKSTLLG 151 (641)
T ss_pred ccceeEEEEEEecccCCcceeEe
Confidence 35566789999999999999995
No 411
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.20 E-value=0.036 Score=50.49 Aligned_cols=64 Identities=14% Similarity=0.011 Sum_probs=35.8
Q ss_pred cEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 121 DVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 121 d~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
.-.++|.+.+-. ..+.. .+..+.. .+ +--+|.||.|... ..-.+..++...++|+..++ +|.+|
T Consensus 332 ~~~~LVl~a~~~~~~l~~---~~~~f~~----~~-~~~vI~TKlDet~----~~G~i~~~~~~~~lPv~yit--~Gq~V 396 (424)
T PRK05703 332 IDVYLVLSATTKYEDLKD---IYKHFSR----LP-LDGLIFTKLDETS----SLGSILSLLIESGLPISYLT--NGQRV 396 (424)
T ss_pred CeEEEEEECCCCHHHHHH---HHHHhCC----CC-CCEEEEecccccc----cccHHHHHHHHHCCCEEEEe--CCCCC
Confidence 456677777543 33333 3333311 11 2256789999633 23356777888898865553 45554
No 412
>KOG2485|consensus
Probab=96.20 E-value=0.0047 Score=53.09 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCchhhhchhhhc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~ 73 (250)
..++|+|-||||||||+| .+.
T Consensus 144 ~~vmVvGvPNVGKSsLIN-a~r 164 (335)
T KOG2485|consen 144 YNVMVVGVPNVGKSSLIN-ALR 164 (335)
T ss_pred eeEEEEcCCCCChHHHHH-HHH
Confidence 339999999999999999 543
No 413
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.13 E-value=0.0071 Score=54.62 Aligned_cols=24 Identities=4% Similarity=0.040 Sum_probs=20.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
...+|+|+|.+|+|||||++ .+..
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~-~La~ 241 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVN-KLAN 241 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHH-HHHH
Confidence 44569999999999999997 6665
No 414
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.11 E-value=0.0033 Score=52.46 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|.|+|++|||||||++ .+.+
T Consensus 32 vsilGpSGcGKSTLLr-iiAG 51 (248)
T COG1116 32 VAILGPSGCGKSTLLR-LIAG 51 (248)
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 9999999999999995 5444
No 415
>PRK08118 topology modulation protein; Reviewed
Probab=96.11 E-value=0.003 Score=50.05 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
||+|+|.+|||||||.. .+..
T Consensus 3 rI~I~G~~GsGKSTlak-~L~~ 23 (167)
T PRK08118 3 KIILIGSGGSGKSTLAR-QLGE 23 (167)
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 59999999999999995 6655
No 416
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.07 E-value=0.0036 Score=51.87 Aligned_cols=16 Identities=6% Similarity=0.108 Sum_probs=15.7
Q ss_pred EEEEcCCCCchhhhch
Q psy5810 54 FIVHSDTNHTQRCLTS 69 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~ 69 (250)
++|+|++|||||||+|
T Consensus 34 vaI~GpSGSGKSTLLn 49 (226)
T COG1136 34 VAIVGPSGSGKSTLLN 49 (226)
T ss_pred EEEECCCCCCHHHHHH
Confidence 9999999999999997
No 417
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.05 E-value=0.04 Score=49.55 Aligned_cols=95 Identities=12% Similarity=0.041 Sum_probs=48.7
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCc-EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPD-VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad-~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
++.+.||+|.-... ..... ....+......+ -.+||.|.+-.. +.+...+.... .-.+-=+|.||.|...
T Consensus 256 DlVLIDTaGr~~~~-~~~l~-el~~~l~~~~~~~e~~LVlsat~~~--~~~~~~~~~~~-----~~~~~~~I~TKlDet~ 326 (388)
T PRK12723 256 DLVLVDTIGKSPKD-FMKLA-EMKELLNACGRDAEFHLAVSSTTKT--SDVKEIFHQFS-----PFSYKTVIFTKLDETT 326 (388)
T ss_pred CEEEEcCCCCCccC-HHHHH-HHHHHHHhcCCCCeEEEEEcCCCCH--HHHHHHHHHhc-----CCCCCEEEEEeccCCC
Confidence 56678999864211 00111 111111111223 578888887652 23333333331 1113455679999643
Q ss_pred CCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 168 RRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 168 ~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
..-.+..++...+.|+..+ .+|.+|
T Consensus 327 ----~~G~~l~~~~~~~~Pi~yi--t~Gq~v 351 (388)
T PRK12723 327 ----CVGNLISLIYEMRKEVSYV--TDGQIV 351 (388)
T ss_pred ----cchHHHHHHHHHCCCEEEE--eCCCCC
Confidence 2334566777788886555 356666
No 418
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.02 E-value=0.0036 Score=47.64 Aligned_cols=20 Identities=10% Similarity=0.195 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+++|.+|||||||+. .+..
T Consensus 2 ii~~G~pgsGKSt~a~-~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK-RLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 7899999999999996 6664
No 419
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.02 E-value=0.003 Score=50.56 Aligned_cols=22 Identities=5% Similarity=0.141 Sum_probs=19.1
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+|.||+||||+.. ++..
T Consensus 1 ~riiilG~pGaGK~T~A~-~La~ 22 (178)
T COG0563 1 MRILILGPPGAGKSTLAK-KLAK 22 (178)
T ss_pred CeEEEECCCCCCHHHHHH-HHHH
Confidence 369999999999999996 6666
No 420
>PRK07261 topology modulation protein; Provisional
Probab=95.99 E-value=0.0039 Score=49.52 Aligned_cols=21 Identities=5% Similarity=0.048 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+|+|+|.+|+|||||.. .+..
T Consensus 2 ri~i~G~~GsGKSTla~-~l~~ 22 (171)
T PRK07261 2 KIAIIGYSGSGKSTLAR-KLSQ 22 (171)
T ss_pred EEEEEcCCCCCHHHHHH-HHHH
Confidence 69999999999999996 6654
No 421
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.96 E-value=0.028 Score=40.31 Aligned_cols=77 Identities=13% Similarity=0.147 Sum_probs=45.1
Q ss_pred EEEEc-CCCCchhhhchhhhccc-----cccccccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEE
Q psy5810 54 FIVHS-DTNHTQRCLTSMPFCSQ-----VENFVQTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVY 127 (250)
Q Consensus 54 i~iiG-~~~vGKSsLi~~~~~~~-----~~~~~~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~ 127 (250)
|++.| ..|+||||+.. .+... .....-..++. .++.+.|+++.........+. .+|.++++.
T Consensus 2 i~~~~~kgG~Gkst~~~-~la~~~~~~~~~vl~~d~d~~-~d~viiD~p~~~~~~~~~~l~----------~ad~viv~~ 69 (104)
T cd02042 2 IAVANQKGGVGKTTTAV-NLAAALARRGKRVLLIDLDPQ-YDYIIIDTPPSLGLLTRNALA----------AADLVLIPV 69 (104)
T ss_pred EEEEeCCCCcCHHHHHH-HHHHHHHhCCCcEEEEeCCCC-CCEEEEeCcCCCCHHHHHHHH----------HCCEEEEec
Confidence 56667 66999999874 43321 11111122222 356778998865332223333 589999998
Q ss_pred eCCCHHhHHHHHHHHH
Q psy5810 128 SVIERKTFKKAEDMLK 143 (250)
Q Consensus 128 D~~~~~Sf~~~~~~~~ 143 (250)
+.+ ..++..+..+++
T Consensus 70 ~~~-~~s~~~~~~~~~ 84 (104)
T cd02042 70 QPS-PLDLDGLEKLLE 84 (104)
T ss_pred cCC-HHHHHHHHHHHH
Confidence 774 556666666655
No 422
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=95.92 E-value=0.043 Score=43.52 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=55.0
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
++.+.||++.........+. .+|.++++...+ ..+...+..+++.+.+ .+.|+.+|.||.|....
T Consensus 94 d~viiDtpp~~~~~~~~~l~----------~aD~vliv~~~~-~~~~~~~~~~~~~l~~----~~~~~~vV~N~~~~~~~ 158 (179)
T cd03110 94 ELIIIDGPPGIGCPVIASLT----------GADAALLVTEPT-PSGLHDLERAVELVRH----FGIPVGVVINKYDLNDE 158 (179)
T ss_pred CEEEEECcCCCcHHHHHHHH----------cCCEEEEEecCC-cccHHHHHHHHHHHHH----cCCCEEEEEeCCCCCcc
Confidence 56788999664221112223 699999999887 4466667777666643 24678899999996431
Q ss_pred CccCHHHHHHHHHHhCCeEE
Q psy5810 169 RQVTHSDGKKLAYAWGVKFV 188 (250)
Q Consensus 169 ~~v~~~~~~~~~~~~~~~~~ 188 (250)
...+..+++++++++++
T Consensus 159 ---~~~~~~~~~~~~~~~vl 175 (179)
T cd03110 159 ---IAEEIEDYCEEEGIPIL 175 (179)
T ss_pred ---hHHHHHHHHHHcCCCeE
Confidence 34567778888888765
No 423
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=95.91 E-value=0.079 Score=41.65 Aligned_cols=84 Identities=13% Similarity=0.049 Sum_probs=48.4
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
++.++|+++.........+. .+|.+|++.+.+. .++..+..+++.+... ......+|.|+.|...
T Consensus 64 d~viiD~p~~~~~~~~~~l~----------~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~- 128 (179)
T cd02036 64 DYILIDSPAGIERGFITAIA----------PADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDM- 128 (179)
T ss_pred CEEEEECCCCCcHHHHHHHH----------hCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCcccc-
Confidence 57788988754222222223 6899999987754 4555666666655432 2335778899998532
Q ss_pred CccCHHHHHHHHHHhCCeEE
Q psy5810 169 RQVTHSDGKKLAYAWGVKFV 188 (250)
Q Consensus 169 ~~v~~~~~~~~~~~~~~~~~ 188 (250)
....+....+.+.++.+++
T Consensus 129 -~~~~~~~~~~~~~~~~~v~ 147 (179)
T cd02036 129 -VEGGDMVEDIEEILGVPLL 147 (179)
T ss_pred -cchhhHHHHHHHHhCCCEE
Confidence 1222223445555676643
No 424
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.87 E-value=0.0037 Score=49.00 Aligned_cols=21 Identities=5% Similarity=0.194 Sum_probs=16.2
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
||+|+|.+++|||||++ .+..
T Consensus 1 rI~i~G~~stGKTTL~~-~L~~ 21 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIE-ALAA 21 (163)
T ss_dssp -EEEE--TTSHHHHHHH-HHHH
T ss_pred CEEEECCCCCCHHHHHH-HHHH
Confidence 69999999999999997 6765
No 425
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.81 E-value=0.03 Score=50.66 Aligned_cols=22 Identities=5% Similarity=0.019 Sum_probs=18.1
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..++++|++||||||++. ++..
T Consensus 224 ~vi~lvGptGvGKTTtaa-KLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIA-KLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 348899999999999996 6553
No 426
>KOG1533|consensus
Probab=95.80 E-value=0.014 Score=48.48 Aligned_cols=16 Identities=6% Similarity=0.040 Sum_probs=14.4
Q ss_pred EEEEcCCCCchhhhch
Q psy5810 54 FIVHSDTNHTQRCLTS 69 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~ 69 (250)
-+|||+||+||||..+
T Consensus 5 qvVIGPPgSGKsTYc~ 20 (290)
T KOG1533|consen 5 QVVIGPPGSGKSTYCN 20 (290)
T ss_pred eEEEcCCCCCccchhh
Confidence 6899999999999875
No 427
>KOG2484|consensus
Probab=95.75 E-value=0.0048 Score=54.66 Aligned_cols=48 Identities=8% Similarity=-0.095 Sum_probs=32.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee--------EEEEEeCCCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF--------FIVYSDTNHT 98 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~--------~i~i~Dt~g~ 98 (250)
..+.+.|||-|||||||+|| .+... ........|.|.. .+.+.|.+|.
T Consensus 251 ~sIrvGViG~PNVGKSSvIN-sL~~~k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgi 307 (435)
T KOG2484|consen 251 TSIRVGIIGYPNVGKSSVIN-SLKRRKACNVGNVPGVTRSMQEVKLDKKIRLLDSPGI 307 (435)
T ss_pred cceEeeeecCCCCChhHHHH-HHHHhccccCCCCccchhhhhheeccCCceeccCCce
Confidence 55779999999999999999 66552 1122333333332 6778888885
No 428
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.72 E-value=0.0067 Score=45.83 Aligned_cols=20 Identities=5% Similarity=0.111 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|..|+|||||++ .+.+
T Consensus 14 ~~i~G~nGsGKStLl~-~l~g 33 (137)
T PF00005_consen 14 VAIVGPNGSGKSTLLK-ALAG 33 (137)
T ss_dssp EEEEESTTSSHHHHHH-HHTT
T ss_pred EEEEccCCCcccccee-eecc
Confidence 9999999999999996 6666
No 429
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.59 E-value=0.033 Score=40.49 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=51.9
Q ss_pred EcCCCCchhhhchhhhcccc--c----c-cc-ccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEe
Q psy5810 57 HSDTNHTQRCLTSMPFCSQV--E----N-FV-QTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYS 128 (250)
Q Consensus 57 iG~~~vGKSsLi~~~~~~~~--~----~-~~-~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D 128 (250)
=+..|+|||++.. .+...- . . .. ..+... .++.+.|+++.........+. .+|.++++.+
T Consensus 6 ~~kgg~gkt~~~~-~la~~~~~~~~~~~~l~d~d~~~~-~D~IIiDtpp~~~~~~~~~l~----------~aD~vlvvv~ 73 (106)
T cd03111 6 GAKGGVGATTLAA-NLAVALAKEAGRRVLLVDLDLQFG-DDYVVVDLGRSLDEVSLAALD----------QADRVFLVTQ 73 (106)
T ss_pred CCCCCCcHHHHHH-HHHHHHHhcCCCcEEEEECCCCCC-CCEEEEeCCCCcCHHHHHHHH----------HcCeEEEEec
Confidence 3567999999774 433320 0 0 00 000000 167788998865332222333 6899999886
Q ss_pred CCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeC
Q psy5810 129 VIERKTFKKAEDMLKTLWDSKYIGEKAVILVANK 162 (250)
Q Consensus 129 ~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK 162 (250)
.+ ..+...+..+++.+.+........+.+|.|+
T Consensus 74 ~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 74 QD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 64 5566667777766654322214456677775
No 430
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=95.56 E-value=0.1 Score=45.73 Aligned_cols=66 Identities=18% Similarity=0.091 Sum_probs=38.6
Q ss_pred CCcEEEEEEeCCCHHhHHH-HHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEec
Q psy5810 119 HPDVFVIVYSVIERKTFKK-AEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSV 192 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa 192 (250)
.-|++|-|.|..+-..-.. +.+...+-.. ..=++|.||+|+..... .+..+...++.+ .++++++.
T Consensus 116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia------~AD~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~ 184 (323)
T COG0523 116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLA------FADVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY 184 (323)
T ss_pred eeceEEEEEeHHHhhhhHHHHHHHHHHHHH------hCcEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc
Confidence 4689999999887543222 3322222211 23367789999865332 344455555554 56888877
No 431
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.54 E-value=0.0071 Score=40.38 Aligned_cols=20 Identities=0% Similarity=0.160 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|.+|+|||++.+ .+..
T Consensus 2 i~i~G~~gsGKst~~~-~l~~ 21 (69)
T cd02019 2 IAITGGSGSGKSTVAK-KLAE 21 (69)
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 7899999999999996 6665
No 432
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.54 E-value=0.032 Score=49.01 Aligned_cols=119 Identities=22% Similarity=0.142 Sum_probs=70.9
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
.+|+++-|.|+-+|.+...- -+.++. .+.|.++|.||+|+... .+.......+....+...+.+++..+.+.
T Consensus 34 ~~d~vvevvDar~P~~s~~~--~l~~~v-----~~k~~i~vlNK~DL~~~-~~~~~W~~~~~~~~~~~~~~v~~~~~~~~ 105 (322)
T COG1161 34 SVDVVVEVVDARDPLGTRNP--ELERIV-----KEKPKLLVLNKADLAPK-EVTKKWKKYFKKEEGIKPIFVSAKSRQGG 105 (322)
T ss_pred cCCEEEEEEeccccccccCc--cHHHHH-----ccCCcEEEEehhhcCCH-HHHHHHHHHHHhcCCCccEEEEeecccCc
Confidence 68999999999998765432 122221 34455999999998652 33444455555555666788888888776
Q ss_pred HHHHHHHHHHH----HhhhhhhhHH--------HHHhhhhhhhhhhhhccCCcCcCccc
Q psy5810 199 DELLVGIARQA----GLNKKRNKLL--------AKKQKKMASYINNIKQFKWFSKVSCE 245 (250)
Q Consensus 199 ~~lf~~l~~~i----~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (250)
..+...+.... .......... .-..-..++.++++.+++.-+...++
T Consensus 106 ~~i~~~~~~~~~~~i~~~~~~~~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~P 164 (322)
T COG1161 106 KKIRKALEKLSEEKIKRLKKKGLLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRP 164 (322)
T ss_pred cchHHHHHHHHHHHHHHHhhcCCCccceEEEEEcCCCCcHHHHHHHHhcccceeeCCCC
Confidence 66554333221 1111111000 00014889999999999884444443
No 433
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.54 E-value=0.0083 Score=39.26 Aligned_cols=16 Identities=6% Similarity=0.142 Sum_probs=15.3
Q ss_pred EEEEcCCCCchhhhch
Q psy5810 54 FIVHSDTNHTQRCLTS 69 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~ 69 (250)
.+|.|+.|+|||||+.
T Consensus 26 tli~G~nGsGKSTllD 41 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLD 41 (62)
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999999996
No 434
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=95.53 E-value=0.014 Score=44.31 Aligned_cols=40 Identities=8% Similarity=0.066 Sum_probs=25.7
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEe
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSD 94 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~D 94 (250)
|++.|+.|+|||||+. .++..-+.-.....||+.-+..++
T Consensus 25 i~l~G~lGaGKTtl~~-~l~~~lg~~~~v~SPTf~lv~~Y~ 64 (133)
T TIGR00150 25 VLLKGDLGAGKTTLVQ-GLLQGLGIQGNVTSPTFTLVNEYN 64 (133)
T ss_pred EEEEcCCCCCHHHHHH-HHHHHcCCCCcccCCCeeeeeecc
Confidence 8999999999999995 676642221223345554444444
No 435
>KOG1534|consensus
Probab=95.48 E-value=0.043 Score=44.89 Aligned_cols=16 Identities=13% Similarity=0.090 Sum_probs=15.0
Q ss_pred EEEEcCCCCchhhhch
Q psy5810 54 FIVHSDTNHTQRCLTS 69 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~ 69 (250)
.+|+|+.|+||||+..
T Consensus 6 ~lV~GpAgSGKSTyC~ 21 (273)
T KOG1534|consen 6 QLVMGPAGSGKSTYCS 21 (273)
T ss_pred EEEEccCCCCcchHHH
Confidence 7899999999999986
No 436
>PRK06217 hypothetical protein; Validated
Probab=95.46 E-value=0.0089 Score=47.87 Aligned_cols=22 Identities=5% Similarity=0.108 Sum_probs=19.0
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.+|+|+|.+|+|||||.. ++..
T Consensus 2 ~~I~i~G~~GsGKSTla~-~L~~ 23 (183)
T PRK06217 2 MRIHITGASGSGTTTLGA-ALAE 23 (183)
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 369999999999999995 6665
No 437
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.44 E-value=0.0086 Score=47.96 Aligned_cols=20 Identities=5% Similarity=0.072 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||+| ...+
T Consensus 28 vAi~GpSGaGKSTLLn-LIAG 47 (231)
T COG3840 28 VAILGPSGAGKSTLLN-LIAG 47 (231)
T ss_pred EEEECCCCccHHHHHH-HHHh
Confidence 9999999999999998 5554
No 438
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.44 E-value=0.0081 Score=48.64 Aligned_cols=20 Identities=10% Similarity=0.134 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+++|++|||||||+| ...+
T Consensus 34 vv~lGpSGcGKTTLLn-l~AG 53 (259)
T COG4525 34 VVVLGPSGCGKTTLLN-LIAG 53 (259)
T ss_pred EEEEcCCCccHHHHHH-HHhc
Confidence 9999999999999998 5444
No 439
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=95.42 E-value=0.0077 Score=44.84 Aligned_cols=20 Identities=10% Similarity=0.311 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|++|+|||+++. .+..
T Consensus 1 ill~G~~G~GKT~l~~-~la~ 20 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR-ALAQ 20 (132)
T ss_dssp EEEESSTTSSHHHHHH-HHHH
T ss_pred CEEECcCCCCeeHHHH-HHHh
Confidence 6899999999999996 6665
No 440
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.41 E-value=0.009 Score=49.59 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=14.9
Q ss_pred EEEEcCCCCchhhhc
Q psy5810 54 FIVHSDTNHTQRCLT 68 (250)
Q Consensus 54 i~iiG~~~vGKSsLi 68 (250)
|+|||++|+|||||+
T Consensus 33 VaiIG~SGaGKSTLL 47 (258)
T COG3638 33 VAIIGPSGAGKSTLL 47 (258)
T ss_pred EEEECCCCCcHHHHH
Confidence 999999999999999
No 441
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.39 E-value=0.0088 Score=45.70 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|++|+|||||++ .+..
T Consensus 2 i~i~GpsGsGKstl~~-~L~~ 21 (137)
T cd00071 2 IVLSGPSGVGKSTLLK-RLLE 21 (137)
T ss_pred EEEECCCCCCHHHHHH-HHHh
Confidence 7899999999999997 6665
No 442
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.37 E-value=0.0081 Score=47.76 Aligned_cols=20 Identities=10% Similarity=-0.017 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+..
T Consensus 4 ~~i~G~sGsGKttl~~-~l~~ 23 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLD-YARA 23 (179)
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999997 6655
No 443
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.37 E-value=0.0089 Score=48.01 Aligned_cols=21 Identities=5% Similarity=0.119 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|++|+|||||++ .+..
T Consensus 4 ~i~l~G~sGsGKsTl~~-~l~~ 24 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLA-ALRQ 24 (186)
T ss_pred EEEEECCCCCCHHHHHH-HHhc
Confidence 38999999999999996 6654
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.36 E-value=0.0086 Score=49.13 Aligned_cols=23 Identities=22% Similarity=-0.119 Sum_probs=19.1
Q ss_pred EEecCCCCCHHHHHHHHHHHHHh
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
++||++.+-+.|++.-+...+.+
T Consensus 163 PTSALDPElv~EVL~vm~~LA~e 185 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEE 185 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHc
Confidence 89999999999998887766544
No 445
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.32 E-value=0.0097 Score=44.08 Aligned_cols=20 Identities=0% Similarity=0.031 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|.|.+||||||++. .+..
T Consensus 1 I~i~G~~GsGKtTia~-~L~~ 20 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAK-ELAE 20 (129)
T ss_dssp EEEEESTTSSHHHHHH-HHHH
T ss_pred CEEECCCCCCHHHHHH-HHHH
Confidence 7899999999999996 5655
No 446
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.29 E-value=0.0092 Score=47.32 Aligned_cols=39 Identities=23% Similarity=0.049 Sum_probs=23.3
Q ss_pred CCCcEEEEeeCC-CccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 152 GEKAVILVANKA-DLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 152 ~~~piilv~nK~-Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
++.|++.+..+. +.+ -..++....+..+++++..+...+
T Consensus 124 s~~~vi~vv~~~~~~~--------~l~~i~~~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 124 SNKPVIGVVHKRSDNP--------FLEEIKRRPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTSEEEEE--SS--SC--------CHHHHHTTTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEEecCCCcH--------HHHHHHhCCCcEEEEeChhHHhhH
Confidence 678888887777 421 144556666788999988877665
No 447
>PRK01889 GTPase RsgA; Reviewed
Probab=95.25 E-value=0.01 Score=52.85 Aligned_cols=21 Identities=5% Similarity=0.059 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++++|.+|+|||||++ .+.+
T Consensus 197 ~~~lvG~sgvGKStLin-~L~g 217 (356)
T PRK01889 197 TVALLGSSGVGKSTLVN-ALLG 217 (356)
T ss_pred EEEEECCCCccHHHHHH-HHHH
Confidence 49999999999999998 6765
No 448
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.20 E-value=0.011 Score=46.96 Aligned_cols=21 Identities=5% Similarity=0.214 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|++|+|||||++ .+..
T Consensus 3 ii~l~G~~GsGKsTl~~-~L~~ 23 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVK-ALLE 23 (180)
T ss_pred EEEEECCCCCCHHHHHH-HHHc
Confidence 38999999999999997 6766
No 449
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.20 E-value=0.012 Score=43.52 Aligned_cols=21 Identities=5% Similarity=0.188 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++++|++|+|||+++. .++.
T Consensus 4 ~~~l~G~~G~GKTtl~~-~l~~ 24 (148)
T smart00382 4 VILIVGPPGSGKTTLAR-ALAR 24 (148)
T ss_pred EEEEECCCCCcHHHHHH-HHHh
Confidence 38999999999999996 6666
No 450
>COG4639 Predicted kinase [General function prediction only]
Probab=95.18 E-value=0.011 Score=45.84 Aligned_cols=16 Identities=0% Similarity=0.206 Sum_probs=15.4
Q ss_pred EEEEcCCCCchhhhch
Q psy5810 54 FIVHSDTNHTQRCLTS 69 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~ 69 (250)
++++|.+|+||||++.
T Consensus 5 vvL~G~~~sGKsT~ak 20 (168)
T COG4639 5 VVLRGASGSGKSTFAK 20 (168)
T ss_pred EEEecCCCCchhHHHH
Confidence 8999999999999997
No 451
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.16 E-value=0.011 Score=44.88 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+++|++|+|||+|+. .++.
T Consensus 2 vlL~G~~G~GKt~l~~-~la~ 21 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLAR-ELAA 21 (139)
T ss_dssp EEEEESSSSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6554
No 452
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=95.15 E-value=0.012 Score=51.68 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|||||||++ .+.+
T Consensus 32 ~vllGPSGcGKSTlLr-~IAG 51 (338)
T COG3839 32 VVLLGPSGCGKSTLLR-MIAG 51 (338)
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 9999999999999995 5544
No 453
>KOG2423|consensus
Probab=95.14 E-value=0.022 Score=50.68 Aligned_cols=47 Identities=9% Similarity=-0.057 Sum_probs=0.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------EEEEEeCCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------FIVYSDTNH 97 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------~i~i~Dt~g 97 (250)
+.|-|.+||-||+||||+|| .+-....--...+..... .|.++|.+|
T Consensus 306 kqISVGfiGYPNvGKSSiIN-TLR~KkVCkvAPIpGETKVWQYItLmkrIfLIDcPG 361 (572)
T KOG2423|consen 306 KQISVGFIGYPNVGKSSIIN-TLRKKKVCKVAPIPGETKVWQYITLMKRIFLIDCPG 361 (572)
T ss_pred cceeeeeecCCCCchHHHHH-HHhhcccccccCCCCcchHHHHHHHHhceeEecCCC
No 454
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.13 E-value=0.012 Score=42.94 Aligned_cols=19 Identities=11% Similarity=0.188 Sum_probs=16.7
Q ss_pred EEEEcCCCCchhhhchhhhc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~ 73 (250)
++++|++|+|||||+. .+.
T Consensus 18 v~I~GpSGsGKSTLl~-~l~ 36 (107)
T cd00820 18 VLITGDSGIGKTELAL-ELI 36 (107)
T ss_pred EEEEcCCCCCHHHHHH-Hhh
Confidence 8999999999999996 443
No 455
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.12 E-value=0.02 Score=46.91 Aligned_cols=24 Identities=0% Similarity=0.140 Sum_probs=19.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
....|+|+|++|||||||++ .+..
T Consensus 12 ~~~~ivi~GpsG~GK~tl~~-~L~~ 35 (206)
T PRK14738 12 KPLLVVISGPSGVGKDAVLA-RMRE 35 (206)
T ss_pred CCeEEEEECcCCCCHHHHHH-HHHh
Confidence 34458999999999999997 6654
No 456
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.11 E-value=0.096 Score=44.78 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=38.0
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
..+-.+||.|.+-.. +++..+++.+. .-.+-=+|.||.|... ..-.+..++...+.|+..++ +|+++
T Consensus 184 ~~~~~~LVl~a~~~~--~d~~~~~~~f~-----~~~~~~~I~TKlDet~----~~G~~l~~~~~~~~Pi~~it--~Gq~v 250 (270)
T PRK06731 184 EPDYICLTLSASMKS--KDMIEIITNFK-----DIHIDGIVFTKFDETA----SSGELLKIPAVSSAPIVLMT--DGQDV 250 (270)
T ss_pred CCCeEEEEEcCccCH--HHHHHHHHHhC-----CCCCCEEEEEeecCCC----CccHHHHHHHHHCcCEEEEe--CCCCC
Confidence 456788899876321 22333434331 1123455679999643 22345667777888865553 45554
Q ss_pred H
Q psy5810 199 D 199 (250)
Q Consensus 199 ~ 199 (250)
.
T Consensus 251 p 251 (270)
T PRK06731 251 K 251 (270)
T ss_pred C
Confidence 4
No 457
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.013 Score=45.93 Aligned_cols=23 Identities=4% Similarity=0.054 Sum_probs=19.7
Q ss_pred EEEEEEEcCCCCchhhhchhhhcc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.+||.|-|.||||||||+. ++.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~-ki~e 27 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVL-KIAE 27 (179)
T ss_pred ceEEEEeCCCCccHHHHHH-HHHH
Confidence 3679999999999999996 6654
No 458
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.07 E-value=0.016 Score=46.77 Aligned_cols=22 Identities=14% Similarity=0.298 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchhhhchhhhccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~ 75 (250)
-|+|+|++|||||||++ ++...
T Consensus 6 ~ivl~GpsG~GK~tl~~-~l~~~ 27 (186)
T PRK14737 6 LFIISSVAGGGKSTIIQ-ALLEE 27 (186)
T ss_pred EEEEECCCCCCHHHHHH-HHHhc
Confidence 39999999999999997 67663
No 459
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=95.07 E-value=0.059 Score=43.81 Aligned_cols=42 Identities=17% Similarity=0.278 Sum_probs=28.3
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCCCc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNHTQ 99 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g~~ 99 (250)
++|.|.+|+|||+++. .++. ....++.+....+.+.|..|..
T Consensus 41 ~li~G~tgsGKS~~l~-~ll~---~l~~~~~p~~~~l~iiD~k~~~ 82 (205)
T PF01580_consen 41 LLIAGATGSGKSTLLR-TLLL---SLALTYSPDDVQLYIIDPKGSD 82 (205)
T ss_dssp EEEE--TTSSHHHHHH-HHHH---HHHTT--TTTEEEEEE-TTSSC
T ss_pred EEEEcCCCCCccHHHH-HHHH---HHHHHhcCCccEEEEEcCCccc
Confidence 9999999999999995 5554 4445556666778899988653
No 460
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.05 E-value=0.014 Score=46.69 Aligned_cols=19 Identities=11% Similarity=0.053 Sum_probs=16.9
Q ss_pred EEEEcCCCCchhhhchhhhc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~ 73 (250)
++|+|++|+|||||++ .+.
T Consensus 24 ~~l~G~nG~GKSTLl~-~il 42 (176)
T cd03238 24 VVVTGVSGSGKSTLVN-EGL 42 (176)
T ss_pred EEEECCCCCCHHHHHH-HHh
Confidence 9999999999999996 543
No 461
>KOG0467|consensus
Probab=94.99 E-value=0.052 Score=51.93 Aligned_cols=91 Identities=16% Similarity=0.161 Sum_probs=55.5
Q ss_pred EEEEcCCCCchhhhchhhhccccccccc----------------cccCcee-----------EEEEEeCCCCc--cccCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQ----------------TYHPDVF-----------FIVYSDTNHTQ--RCLTP 104 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~----------------~~~~~~~-----------~i~i~Dt~g~~--~~~~~ 104 (250)
+.++..-.-|||||.. .++...+...+ +-|.|.. .+.++|++|.- .+...
T Consensus 12 ~~~vahvdhgktslad-sl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs 90 (887)
T KOG0467|consen 12 ICLVAHVDHGKTSLAD-SLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS 90 (887)
T ss_pred EEEEEEecCCccchHH-HHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchhhhhh
Confidence 8888888899999996 44432122111 1122221 46678999863 33333
Q ss_pred CccccccccccccCCCcEEEEEEeCCCH---HhHHHHHH-HHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810 105 MPFCSQVENFVQTYHPDVFVIVYSVIER---KTFKKAED-MLKTLWDSKYIGEKAVILVANKAD 164 (250)
Q Consensus 105 ~~~~~~~~~~~~~~~ad~iilV~D~~~~---~Sf~~~~~-~~~~i~~~~~~~~~piilv~nK~D 164 (250)
.-.+ -+|++++..|+-.. ++..-+++ |++ ....+||.||+|
T Consensus 91 sas~----------l~d~alvlvdvvegv~~qt~~vlrq~~~~---------~~~~~lvinkid 135 (887)
T KOG0467|consen 91 SASR----------LSDGALVLVDVVEGVCSQTYAVLRQAWIE---------GLKPILVINKID 135 (887)
T ss_pred hhhh----------hcCCcEEEEeeccccchhHHHHHHHHHHc---------cCceEEEEehhh
Confidence 3333 47999999998663 34433332 433 456788999999
No 462
>PRK03839 putative kinase; Provisional
Probab=94.98 E-value=0.012 Score=46.93 Aligned_cols=21 Identities=0% Similarity=0.104 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+|+|+|.+|+||||+.. ++..
T Consensus 2 ~I~l~G~pGsGKsT~~~-~La~ 22 (180)
T PRK03839 2 IIAITGTPGVGKTTVSK-LLAE 22 (180)
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 59999999999999995 6655
No 463
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.97 E-value=0.012 Score=45.13 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=18.0
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|..|+|||||+. .+++
T Consensus 3 v~VvG~~~sGKTTl~~-~Li~ 22 (140)
T PF03205_consen 3 VQVVGPKNSGKTTLIR-KLIN 22 (140)
T ss_dssp EEEEESTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 7766
No 464
>KOG0066|consensus
Probab=94.94 E-value=0.073 Score=48.26 Aligned_cols=22 Identities=5% Similarity=-0.002 Sum_probs=18.8
Q ss_pred EEEEEcCCCCchhhhchhhhccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~ 75 (250)
+|+|+|+.|||||||+. .+++.
T Consensus 615 RiaIVGPNGVGKSTlLk-LL~Gk 636 (807)
T KOG0066|consen 615 RIAIVGPNGVGKSTLLK-LLIGK 636 (807)
T ss_pred eeEEECCCCccHHHHHH-HHhcC
Confidence 39999999999999996 66653
No 465
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.92 E-value=0.014 Score=43.55 Aligned_cols=20 Identities=5% Similarity=0.212 Sum_probs=17.2
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||++++ ++..
T Consensus 7 ~~i~G~~G~GKT~~~~-~~~~ 26 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIK-RLAR 26 (131)
T ss_dssp EEEEE-TTSSHHHHHH-HHHH
T ss_pred cEEEcCCCCCHHHHHH-HHHH
Confidence 8999999999999997 7766
No 466
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.89 E-value=0.013 Score=46.33 Aligned_cols=20 Identities=5% Similarity=0.255 Sum_probs=15.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|++ ++..
T Consensus 27 ~ll~G~~G~GKT~ll~-~~~~ 46 (185)
T PF13191_consen 27 LLLTGESGSGKTSLLR-ALLD 46 (185)
T ss_dssp EEE-B-TTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999997 6655
No 467
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.81 E-value=0.015 Score=48.74 Aligned_cols=22 Identities=5% Similarity=0.113 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|+|.+|+|||+|+. .+..
T Consensus 14 fr~viIG~sGSGKT~li~-~lL~ 35 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIK-SLLY 35 (241)
T ss_pred ceEEEECCCCCCHHHHHH-HHHH
Confidence 459999999999999985 5444
No 468
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.80 E-value=0.016 Score=46.23 Aligned_cols=21 Identities=0% Similarity=0.042 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||++. .+..
T Consensus 5 ii~i~G~~GsGKsTl~~-~l~~ 25 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCE-KIVE 25 (188)
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 48999999999999996 6663
No 469
>PRK14530 adenylate kinase; Provisional
Probab=94.79 E-value=0.017 Score=47.49 Aligned_cols=21 Identities=5% Similarity=0.052 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+|+|+|.+||||||+.. .+..
T Consensus 5 ~I~i~G~pGsGKsT~~~-~La~ 25 (215)
T PRK14530 5 RILLLGAPGAGKGTQSS-NLAE 25 (215)
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 59999999999999996 6654
No 470
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.76 E-value=0.015 Score=47.65 Aligned_cols=15 Identities=7% Similarity=-0.013 Sum_probs=14.5
Q ss_pred EEEEcCCCCchhhhc
Q psy5810 54 FIVHSDTNHTQRCLT 68 (250)
Q Consensus 54 i~iiG~~~vGKSsLi 68 (250)
-++||++|||||||+
T Consensus 36 TAlIGPSGcGKST~L 50 (253)
T COG1117 36 TALIGPSGCGKSTLL 50 (253)
T ss_pred EEEECCCCcCHHHHH
Confidence 789999999999999
No 471
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.74 E-value=0.019 Score=47.08 Aligned_cols=20 Identities=0% Similarity=0.017 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 32 ~~i~G~nGsGKSTLl~-~l~G 51 (216)
T TIGR00960 32 VFLVGHSGAGKSTFLK-LILG 51 (216)
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 9999999999999996 5665
No 472
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.73 E-value=0.019 Score=47.11 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 33 ~~l~G~nGsGKSTLl~-~i~G 52 (218)
T cd03255 33 VAIVGPSGSGKSTLLN-ILGG 52 (218)
T ss_pred EEEEcCCCCCHHHHHH-HHhC
Confidence 9999999999999996 6665
No 473
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=94.69 E-value=0.031 Score=48.91 Aligned_cols=38 Identities=16% Similarity=0.185 Sum_probs=28.5
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNH 97 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g 97 (250)
..|++.|-+|+|||||+| .++.. +.++..-+.+|||+.
T Consensus 174 ~NILisGGTGSGKTTlLN-al~~~-------i~~~eRvItiEDtaE 211 (355)
T COG4962 174 CNILISGGTGSGKTTLLN-ALSGF-------IDSDERVITIEDTAE 211 (355)
T ss_pred eeEEEeCCCCCCHHHHHH-HHHhc-------CCCcccEEEEeehhh
Confidence 469999999999999999 77662 112224567899984
No 474
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.68 E-value=0.019 Score=45.95 Aligned_cols=20 Identities=0% Similarity=-0.051 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 28 ~~l~G~nGsGKSTLl~-~l~G 47 (177)
T cd03222 28 IGIVGPNGTGKTTAVK-ILAG 47 (177)
T ss_pred EEEECCCCChHHHHHH-HHHc
Confidence 9999999999999996 5555
No 475
>PRK08233 hypothetical protein; Provisional
Probab=94.68 E-value=0.017 Score=45.72 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+-|+|.|.+|+|||||.. ++..
T Consensus 4 ~iI~I~G~~GsGKtTla~-~L~~ 25 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTE-RLTH 25 (182)
T ss_pred eEEEEECCCCCCHHHHHH-HHHh
Confidence 448889999999999997 6765
No 476
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.68 E-value=0.018 Score=46.96 Aligned_cols=20 Identities=5% Similarity=0.084 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 30 ~~l~G~nGsGKSTLl~-~l~G 49 (211)
T cd03225 30 VLIVGPNGSGKSTLLR-LLNG 49 (211)
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 8999999999999996 6665
No 477
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.67 E-value=0.016 Score=46.88 Aligned_cols=20 Identities=0% Similarity=0.051 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|.|.+|||||||.+ .+.+
T Consensus 2 igi~G~~GsGKSTl~~-~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAE-EIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 7899999999999996 6655
No 478
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.66 E-value=0.021 Score=46.50 Aligned_cols=20 Identities=5% Similarity=0.125 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 29 ~~i~G~nGsGKSTLl~-~l~G 48 (205)
T cd03226 29 IALTGKNGAGKTTLAK-ILAG 48 (205)
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 9999999999999996 6665
No 479
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.64 E-value=0.016 Score=47.30 Aligned_cols=22 Identities=0% Similarity=0.101 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.-|+|+|.+|+|||||++ .+.+
T Consensus 7 ~vi~I~G~sGsGKSTl~~-~l~~ 28 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVAR-KIYE 28 (207)
T ss_pred EEEEEECCCCCCHHHHHH-HHHH
Confidence 349999999999999996 6665
No 480
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.63 E-value=0.02 Score=46.05 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 21 ~~i~G~nGsGKSTLl~-~i~G 40 (190)
T TIGR01166 21 LALLGANGAGKSTLLL-HLNG 40 (190)
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 9999999999999996 5555
No 481
>PRK13695 putative NTPase; Provisional
Probab=94.61 E-value=0.017 Score=45.82 Aligned_cols=21 Identities=5% Similarity=-0.024 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCchhhhchhhhc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~ 73 (250)
+||+|+|.+|+|||||+. .+.
T Consensus 1 ~~i~ltG~~G~GKTTll~-~i~ 21 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVL-KIA 21 (174)
T ss_pred CEEEEECCCCCCHHHHHH-HHH
Confidence 479999999999999996 543
No 482
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.61 E-value=0.02 Score=46.82 Aligned_cols=23 Identities=4% Similarity=0.134 Sum_probs=19.4
Q ss_pred EEEEEEEcCCCCchhhhchhhhcc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
...|+|.|.+|||||||.+ .+..
T Consensus 6 ~~iI~I~G~sGsGKTTl~~-~l~~ 28 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVAS-TIYE 28 (209)
T ss_pred CEEEEEECCCCCCHHHHHH-HHHH
Confidence 4559999999999999996 6655
No 483
>PRK00300 gmk guanylate kinase; Provisional
Probab=94.61 E-value=0.018 Score=46.74 Aligned_cols=20 Identities=5% Similarity=0.190 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|++|+|||||+. .+..
T Consensus 8 i~i~G~sGsGKstl~~-~l~~ 27 (205)
T PRK00300 8 IVLSGPSGAGKSTLVK-ALLE 27 (205)
T ss_pred EEEECCCCCCHHHHHH-HHHh
Confidence 9999999999999996 6655
No 484
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.60 E-value=0.23 Score=43.44 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=39.5
Q ss_pred CcEEEEEEeCCC-HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 120 PDVFVIVYSVIE-RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 120 ad~iilV~D~~~-~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
++-++++.|.+- ..+++..+.+-+-+ ++ --+|.+|.|-...-.+ +...+..+++|+..+- -|+++
T Consensus 258 p~e~llvlDAttGqnal~QAk~F~eav-------~l-~GiIlTKlDgtAKGG~----il~I~~~l~~PI~fiG--vGE~~ 323 (340)
T COG0552 258 PHEILLVLDATTGQNALSQAKIFNEAV-------GL-DGIILTKLDGTAKGGI----ILSIAYELGIPIKFIG--VGEGY 323 (340)
T ss_pred CceEEEEEEcccChhHHHHHHHHHHhc-------CC-ceEEEEecccCCCcce----eeeHHHHhCCCEEEEe--CCCCh
Confidence 456888889876 45666655433322 22 2345699996443222 3446677899976663 34455
Q ss_pred HHH
Q psy5810 199 DEL 201 (250)
Q Consensus 199 ~~l 201 (250)
+++
T Consensus 324 ~DL 326 (340)
T COG0552 324 DDL 326 (340)
T ss_pred hhc
Confidence 544
No 485
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.59 E-value=0.022 Score=47.44 Aligned_cols=20 Identities=5% Similarity=0.082 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 29 ~~l~G~nGsGKSTLl~-~l~G 48 (235)
T cd03261 29 LAIIGPSGSGKSTLLR-LIVG 48 (235)
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 9999999999999996 6665
No 486
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.02 Score=46.77 Aligned_cols=21 Identities=5% Similarity=0.101 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|++|+|||||++ .+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~-~l~G 47 (211)
T cd03264 27 MYGLLGPNGAGKTTLMR-ILAT 47 (211)
T ss_pred cEEEECCCCCCHHHHHH-HHhC
Confidence 49999999999999996 5665
No 487
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.57 E-value=0.021 Score=50.47 Aligned_cols=20 Identities=5% Similarity=0.026 Sum_probs=17.0
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+.++|++||||||++. .+.+
T Consensus 34 ~~lLGPSGcGKTTlLR-~IAG 53 (352)
T COG3842 34 VTLLGPSGCGKTTLLR-MIAG 53 (352)
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8899999999999993 5554
No 488
>PF05729 NACHT: NACHT domain
Probab=94.57 E-value=0.019 Score=44.33 Aligned_cols=20 Identities=5% Similarity=0.182 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+++. .++.
T Consensus 3 l~I~G~~G~GKStll~-~~~~ 22 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLR-KLAQ 22 (166)
T ss_pred EEEECCCCCChHHHHH-HHHH
Confidence 7899999999999996 6665
No 489
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=94.56 E-value=0.019 Score=45.95 Aligned_cols=21 Identities=5% Similarity=0.177 Sum_probs=18.4
Q ss_pred EEEEcCCCCchhhhchhhhccc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~ 75 (250)
++|.|++|||||||+. .+...
T Consensus 7 ~vlsgPSG~GKsTl~k-~L~~~ 27 (191)
T COG0194 7 IVLSGPSGVGKSTLVK-ALLED 27 (191)
T ss_pred EEEECCCCCCHHHHHH-HHHhh
Confidence 8999999999999997 66664
No 490
>PRK13949 shikimate kinase; Provisional
Probab=94.54 E-value=0.02 Score=45.38 Aligned_cols=21 Identities=5% Similarity=0.010 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+|+|+|.+|+||||+.. .+..
T Consensus 3 ~I~liG~~GsGKstl~~-~La~ 23 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGK-ALAR 23 (169)
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 59999999999999995 5554
No 491
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.53 E-value=0.021 Score=46.61 Aligned_cols=20 Identities=5% Similarity=-0.042 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 29 ~~i~G~nGsGKSTLl~-~l~G 48 (210)
T cd03269 29 FGLLGPNGAGKTTTIR-MILG 48 (210)
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 6665
No 492
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.52 E-value=0.059 Score=39.16 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=17.1
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|.|.|++|+|||+|.+ .++.
T Consensus 1 I~i~G~~G~GKS~l~~-~l~~ 20 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAK-ELAK 20 (107)
T ss_pred CEEECCCCCCHHHHHH-HHHH
Confidence 5689999999999997 6665
No 493
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.52 E-value=0.023 Score=46.44 Aligned_cols=20 Identities=5% Similarity=0.044 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 30 ~~i~G~nGsGKSTLl~-~l~G 49 (214)
T cd03292 30 VFLVGPSGAGKSTLLK-LIYK 49 (214)
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 8999999999999995 5665
No 494
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.51 E-value=0.023 Score=46.76 Aligned_cols=20 Identities=5% Similarity=0.014 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 29 ~~i~G~nGsGKSTLl~-~i~G 48 (220)
T cd03265 29 FGLLGPNGAGKTTTIK-MLTT 48 (220)
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 6665
No 495
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.51 E-value=0.023 Score=47.47 Aligned_cols=20 Identities=5% Similarity=-0.012 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 31 ~~l~G~nGsGKSTLl~-~l~G 50 (243)
T TIGR02315 31 VAIIGPSGAGKSTLLR-CINR 50 (243)
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 9999999999999996 6665
No 496
>PRK14532 adenylate kinase; Provisional
Probab=94.50 E-value=0.02 Score=45.88 Aligned_cols=21 Identities=5% Similarity=0.044 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+|+++|.+||||||+.. ++..
T Consensus 2 ~i~~~G~pGsGKsT~a~-~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAK-RLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 59999999999999995 6654
No 497
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.49 E-value=0.024 Score=46.10 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 27 ~~i~G~nGsGKSTLl~-~l~G 46 (206)
T TIGR03608 27 YAIIGESGSGKSTLLN-IIGL 46 (206)
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 9999999999999996 6665
No 498
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.02 Score=45.24 Aligned_cols=21 Identities=0% Similarity=0.067 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCchhhhchhhhc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~ 73 (250)
++|+|.|.||+||||+.+ ++.
T Consensus 1 m~I~ITGTPGvGKTT~~~-~L~ 21 (180)
T COG1936 1 MLIAITGTPGVGKTTVCK-LLR 21 (180)
T ss_pred CeEEEeCCCCCchHHHHH-HHH
Confidence 369999999999999997 555
No 499
>PF13173 AAA_14: AAA domain
Probab=94.48 E-value=0.022 Score=42.79 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|+.+||||||+. ++..
T Consensus 5 ~~l~G~R~vGKTtll~-~~~~ 24 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLK-QLAK 24 (128)
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999997 6665
No 500
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.47 E-value=0.022 Score=46.85 Aligned_cols=20 Identities=5% Similarity=0.044 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 29 ~~i~G~nGsGKSTLl~-~l~G 48 (222)
T cd03224 29 VALLGRNGAGKTTLLK-TIMG 48 (222)
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 9999999999999996 5655
Done!