Query psy5810
Match_columns 250
No_of_seqs 182 out of 1903
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 18:36:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 2E-38 6.7E-43 261.2 13.9 153 47-213 9-178 (216)
2 2bov_A RAla, RAS-related prote 100.0 2.5E-31 8.5E-36 215.3 15.9 153 48-213 11-179 (206)
3 3ihw_A Centg3; RAS, centaurin, 100.0 1.7E-30 5.8E-35 208.1 16.4 150 48-213 17-182 (184)
4 2g3y_A GTP-binding protein GEM 100.0 1.4E-30 4.8E-35 213.6 16.2 153 49-212 35-204 (211)
5 2bcg_Y Protein YP2, GTP-bindin 100.0 2.6E-30 8.9E-35 209.9 17.7 156 50-217 7-177 (206)
6 3t5g_A GTP-binding protein RHE 100.0 2.1E-30 7.1E-35 205.9 16.4 154 49-215 4-173 (181)
7 4dsu_A GTPase KRAS, isoform 2B 100.0 2.7E-30 9.2E-35 206.1 16.0 152 50-215 3-170 (189)
8 3q72_A GTP-binding protein RAD 100.0 4.1E-30 1.4E-34 201.1 16.5 151 51-212 2-165 (166)
9 3kkq_A RAS-related protein M-R 100.0 2.7E-30 9.3E-35 205.6 15.7 151 48-211 15-182 (183)
10 3oes_A GTPase rhebl1; small GT 100.0 2.5E-30 8.6E-35 209.5 15.7 154 49-215 22-191 (201)
11 2iwr_A Centaurin gamma 1; ANK 100.0 3.5E-30 1.2E-34 204.1 15.9 150 49-214 5-172 (178)
12 2fu5_C RAS-related protein RAB 100.0 3.7E-30 1.3E-34 204.8 16.0 153 50-214 7-174 (183)
13 3cbq_A GTP-binding protein REM 100.0 2.2E-30 7.6E-35 209.4 14.6 155 48-213 20-190 (195)
14 3q85_A GTP-binding protein REM 100.0 5E-30 1.7E-34 201.1 15.6 151 51-212 2-168 (169)
15 3c5c_A RAS-like protein 12; GD 100.0 3.7E-30 1.3E-34 206.5 14.0 152 47-211 17-186 (187)
16 2nzj_A GTP-binding protein REM 100.0 1.2E-29 4.1E-34 199.9 16.5 152 50-212 3-170 (175)
17 2atv_A RERG, RAS-like estrogen 100.0 4.9E-30 1.7E-34 206.9 13.9 152 49-213 26-193 (196)
18 2cjw_A GTP-binding protein GEM 100.0 1.5E-29 5.3E-34 204.0 16.7 152 51-213 6-174 (192)
19 3reg_A RHO-like small GTPase; 100.0 1.3E-29 4.5E-34 203.9 16.1 153 46-213 18-190 (194)
20 3tw8_B RAS-related protein RAB 100.0 3.6E-29 1.2E-33 198.0 18.1 151 50-215 8-175 (181)
21 3q3j_B RHO-related GTP-binding 100.0 8.8E-30 3E-34 208.8 15.0 152 49-215 25-207 (214)
22 2ew1_A RAS-related protein RAB 100.0 1.3E-29 4.4E-34 206.1 15.8 151 49-213 24-191 (201)
23 2a5j_A RAS-related protein RAB 100.0 2.7E-29 9.3E-34 201.7 17.3 154 48-213 18-186 (191)
24 1c1y_A RAS-related protein RAP 100.0 8.7E-30 3E-34 199.0 14.0 147 51-210 3-166 (167)
25 2hup_A RAS-related protein RAB 100.0 7.4E-30 2.5E-34 207.1 13.9 151 49-213 27-195 (201)
26 2fn4_A P23, RAS-related protei 100.0 1.7E-29 5.8E-34 199.9 15.5 153 49-214 7-175 (181)
27 1z0f_A RAB14, member RAS oncog 100.0 1.5E-29 5.1E-34 199.9 15.0 151 49-211 13-178 (179)
28 2efe_B Small GTP-binding prote 100.0 2.3E-29 7.7E-34 199.6 16.0 155 47-213 8-177 (181)
29 2a9k_A RAS-related protein RAL 100.0 1.3E-29 4.4E-34 201.6 14.6 153 48-213 15-183 (187)
30 1z08_A RAS-related protein RAB 100.0 3.2E-29 1.1E-33 196.5 16.7 150 50-211 5-169 (170)
31 3tkl_A RAS-related protein RAB 100.0 2.9E-29 1E-33 201.5 16.4 154 50-217 15-185 (196)
32 3cpj_B GTP-binding protein YPT 100.0 2.7E-29 9.2E-34 206.9 16.5 153 50-216 12-181 (223)
33 2j0v_A RAC-like GTP-binding pr 100.0 1.6E-29 5.6E-34 206.1 14.9 151 50-215 8-184 (212)
34 1u8z_A RAS-related protein RAL 100.0 1.6E-29 5.4E-34 197.4 14.2 148 51-211 4-167 (168)
35 2gf9_A RAS-related protein RAB 100.0 7.7E-29 2.6E-33 198.6 18.4 151 50-212 21-186 (189)
36 2hxs_A RAB-26, RAS-related pro 100.0 1.6E-29 5.5E-34 199.9 13.4 152 50-212 5-174 (178)
37 2atx_A Small GTP binding prote 100.0 9.4E-29 3.2E-33 198.7 17.8 148 48-210 15-192 (194)
38 2bme_A RAB4A, RAS-related prot 100.0 4.8E-29 1.6E-33 198.7 15.7 152 50-215 9-177 (186)
39 3dz8_A RAS-related protein RAB 100.0 7.1E-30 2.4E-34 205.1 10.9 153 50-214 22-189 (191)
40 2g6b_A RAS-related protein RAB 100.0 1E-28 3.5E-33 195.6 17.4 151 50-212 9-175 (180)
41 1z2a_A RAS-related protein RAB 100.0 4.1E-29 1.4E-33 195.4 14.7 147 50-211 4-167 (168)
42 1r2q_A RAS-related protein RAB 100.0 2.8E-29 9.7E-34 196.5 13.7 148 49-210 4-168 (170)
43 1kao_A RAP2A; GTP-binding prot 100.0 2.1E-29 7.3E-34 196.4 12.9 147 51-210 3-165 (167)
44 2o52_A RAS-related protein RAB 100.0 5.8E-29 2E-33 201.5 15.8 150 50-213 24-190 (200)
45 1z0j_A RAB-22, RAS-related pro 100.0 8.3E-29 2.8E-33 194.0 15.6 147 50-210 5-168 (170)
46 1m7b_A RND3/RHOE small GTP-bin 100.0 5.3E-29 1.8E-33 198.9 14.6 148 49-211 5-183 (184)
47 1zbd_A Rabphilin-3A; G protein 100.0 8.1E-29 2.8E-33 200.5 15.8 153 50-214 7-174 (203)
48 2fg5_A RAB-22B, RAS-related pr 100.0 4.2E-29 1.4E-33 200.9 13.8 151 50-212 22-187 (192)
49 1g16_A RAS-related protein SEC 100.0 1.1E-28 3.7E-33 193.4 15.8 149 51-212 3-166 (170)
50 1z06_A RAS-related protein RAB 100.0 4.2E-29 1.4E-33 200.1 13.8 151 49-210 18-187 (189)
51 3bc1_A RAS-related protein RAB 100.0 9.4E-29 3.2E-33 197.7 15.8 154 49-213 9-187 (195)
52 2oil_A CATX-8, RAS-related pro 100.0 1.2E-28 4E-33 198.0 15.7 150 50-213 24-190 (193)
53 1x3s_A RAS-related protein RAB 100.0 1.1E-28 3.8E-33 197.9 15.2 153 48-214 12-181 (195)
54 2q3h_A RAS homolog gene family 100.0 2.5E-28 8.4E-33 197.4 16.9 151 48-213 17-197 (201)
55 1ek0_A Protein (GTP-binding pr 100.0 6.7E-29 2.3E-33 194.3 13.2 148 51-210 3-168 (170)
56 1ky3_A GTP-binding protein YPT 100.0 3.5E-28 1.2E-32 192.4 17.5 153 49-212 6-179 (182)
57 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.3E-28 7.9E-33 193.0 16.2 152 48-211 4-174 (177)
58 1vg8_A RAS-related protein RAB 100.0 2.9E-28 9.9E-33 197.5 17.0 152 49-214 6-178 (207)
59 3con_A GTPase NRAS; structural 100.0 5.8E-28 2E-32 193.3 18.4 151 49-213 19-185 (190)
60 1gwn_A RHO-related GTP-binding 100.0 1.5E-28 5.2E-33 200.3 14.8 148 49-211 26-204 (205)
61 2yc2_C IFT27, small RAB-relate 100.0 1.7E-28 5.8E-33 198.7 15.1 155 49-214 18-195 (208)
62 1mh1_A RAC1; GTP-binding, GTPa 100.0 1.9E-28 6.5E-33 194.9 14.9 149 50-213 4-182 (186)
63 2y8e_A RAB-protein 6, GH09086P 100.0 1.3E-28 4.5E-33 194.4 13.8 150 48-211 11-177 (179)
64 2j1l_A RHO-related GTP-binding 100.0 2.4E-28 8.3E-33 200.0 15.6 150 49-213 32-211 (214)
65 2il1_A RAB12; G-protein, GDP, 100.0 9.7E-29 3.3E-33 198.9 12.7 149 49-211 24-190 (192)
66 2gf0_A GTP-binding protein DI- 100.0 4.7E-29 1.6E-33 200.8 10.5 151 50-214 7-174 (199)
67 3bwd_D RAC-like GTP-binding pr 100.0 9.6E-29 3.3E-33 196.1 11.7 145 51-210 8-180 (182)
68 4bas_A ADP-ribosylation factor 100.0 1.1E-28 3.7E-33 198.7 12.1 155 46-213 12-191 (199)
69 2p5s_A RAS and EF-hand domain 100.0 1.5E-28 5.2E-33 198.7 12.4 151 49-211 26-197 (199)
70 2gco_A H9, RHO-related GTP-bin 100.0 1.2E-27 3.9E-32 193.9 17.1 147 50-211 24-200 (201)
71 2f7s_A C25KG, RAS-related prot 100.0 2E-28 6.7E-33 200.4 12.3 152 50-214 24-202 (217)
72 2ce2_X GTPase HRAS; signaling 100.0 9.4E-28 3.2E-32 186.7 15.4 147 51-211 3-165 (166)
73 2erx_A GTP-binding protein DI- 100.0 1.8E-28 6.1E-33 192.3 11.3 149 51-210 3-166 (172)
74 4djt_A GTP-binding nuclear pro 100.0 2.3E-28 7.8E-33 200.1 12.4 154 48-215 8-179 (218)
75 3t1o_A Gliding protein MGLA; G 100.0 4E-28 1.4E-32 194.7 12.8 153 47-214 10-195 (198)
76 3clv_A RAB5 protein, putative; 100.0 1.9E-27 6.6E-32 191.3 16.9 148 50-212 6-205 (208)
77 1f6b_A SAR1; gtpases, N-termin 100.0 3.9E-28 1.3E-32 196.6 12.6 146 50-208 24-196 (198)
78 4gzl_A RAS-related C3 botulinu 100.0 4.7E-28 1.6E-32 196.9 12.5 151 44-209 23-203 (204)
79 2fv8_A H6, RHO-related GTP-bin 100.0 2.1E-27 7.2E-32 193.2 16.3 148 50-212 24-201 (207)
80 3cph_A RAS-related protein SEC 100.0 1.8E-27 6E-32 193.7 15.7 151 50-213 19-184 (213)
81 1r8s_A ADP-ribosylation factor 100.0 7.6E-29 2.6E-33 193.5 6.7 147 52-211 1-162 (164)
82 3l0i_B RAS-related protein RAB 100.0 3.8E-29 1.3E-33 202.2 5.1 151 49-211 31-196 (199)
83 1m2o_B GTP-binding protein SAR 99.9 1.1E-27 3.7E-32 192.7 12.9 146 50-208 22-189 (190)
84 1upt_A ARL1, ADP-ribosylation 99.9 6.9E-28 2.4E-32 189.1 10.5 148 51-211 7-169 (171)
85 1zj6_A ADP-ribosylation factor 99.9 1.8E-27 6.3E-32 190.2 12.4 153 50-215 15-182 (187)
86 2h57_A ADP-ribosylation factor 99.9 5.2E-27 1.8E-31 188.0 14.6 149 48-210 18-186 (190)
87 3gj0_A GTP-binding nuclear pro 99.9 1.2E-27 3.9E-32 196.6 10.9 153 47-214 11-178 (221)
88 2x77_A ADP-ribosylation factor 99.9 1.5E-27 5.2E-32 190.9 11.3 150 50-212 21-185 (189)
89 1fzq_A ADP-ribosylation factor 99.9 4.9E-28 1.7E-32 193.1 7.5 149 50-211 15-178 (181)
90 1ksh_A ARF-like protein 2; sma 99.9 7.1E-27 2.4E-31 186.4 14.1 150 50-212 17-181 (186)
91 2b6h_A ADP-ribosylation factor 99.9 3.8E-28 1.3E-32 195.6 6.5 148 50-210 28-190 (192)
92 1zd9_A ADP-ribosylation factor 99.9 4.8E-28 1.6E-32 194.1 6.8 149 48-211 19-185 (188)
93 2h17_A ADP-ribosylation factor 99.9 4.8E-27 1.6E-31 187.0 11.1 148 48-208 18-180 (181)
94 1moz_A ARL1, ADP-ribosylation 99.9 1.1E-26 3.9E-31 184.4 12.5 150 50-212 17-181 (183)
95 2zej_A Dardarin, leucine-rich 99.9 1.5E-27 5.1E-32 190.6 6.1 149 51-212 2-179 (184)
96 3th5_A RAS-related C3 botulinu 99.9 3.1E-28 1E-32 197.5 0.0 147 48-209 27-203 (204)
97 3llu_A RAS-related GTP-binding 99.9 1.6E-26 5.5E-31 186.5 10.0 147 48-209 17-195 (196)
98 2wkq_A NPH1-1, RAS-related C3 99.9 1.4E-25 4.7E-30 194.4 15.2 147 50-211 154-330 (332)
99 3r7w_B Gtpase2, GTP-binding pr 99.9 4.8E-27 1.7E-31 202.9 5.3 146 53-212 1-175 (331)
100 2f9l_A RAB11B, member RAS onco 99.9 6.6E-25 2.3E-29 177.4 16.5 149 51-213 5-170 (199)
101 1oix_A RAS-related protein RAB 99.9 1E-24 3.6E-29 175.4 15.6 158 37-209 16-190 (191)
102 3c5h_A Glucocorticoid receptor 99.9 2.9E-25 9.9E-30 186.9 12.8 90 119-210 162-254 (255)
103 2qu8_A Putative nucleolar GTP- 99.9 9.7E-25 3.3E-29 180.2 14.2 162 49-218 27-212 (228)
104 2wji_A Ferrous iron transport 99.9 3.7E-25 1.3E-29 173.7 10.4 150 51-209 3-163 (165)
105 3o47_A ADP-ribosylation factor 99.9 6.9E-26 2.4E-30 197.5 6.4 147 50-211 164-327 (329)
106 3r7w_A Gtpase1, GTP-binding pr 99.9 4.6E-25 1.6E-29 190.5 11.2 150 51-212 3-182 (307)
107 2fh5_B SR-beta, signal recogni 99.9 1E-25 3.5E-30 183.8 6.4 148 48-208 4-213 (214)
108 3lvq_E ARF-GAP with SH3 domain 99.9 2.9E-25 9.8E-30 203.5 9.1 156 49-217 320-490 (497)
109 2cxx_A Probable GTP-binding pr 99.9 4.6E-25 1.6E-29 175.9 5.4 146 52-213 2-186 (190)
110 2lkc_A Translation initiation 99.9 2.5E-23 8.5E-28 164.2 13.7 140 50-213 7-173 (178)
111 2wjg_A FEOB, ferrous iron tran 99.9 1E-23 3.6E-28 168.1 10.1 155 50-213 6-171 (188)
112 1svi_A GTP-binding protein YSX 99.9 1.1E-23 3.8E-28 168.9 7.0 148 50-210 22-194 (195)
113 2gj8_A MNME, tRNA modification 99.9 4.7E-24 1.6E-28 168.7 3.9 147 52-210 5-165 (172)
114 3a1s_A Iron(II) transport prot 99.9 9.7E-23 3.3E-27 171.8 11.6 152 50-210 4-166 (258)
115 2dyk_A GTP-binding protein; GT 99.9 1.5E-23 5.1E-28 162.6 5.5 145 52-209 2-160 (161)
116 3dpu_A RAB family protein; roc 99.9 6.2E-23 2.1E-27 189.7 9.8 152 47-214 37-211 (535)
117 3b1v_A Ferrous iron uptake tra 99.9 1.5E-22 5.2E-27 171.8 9.9 151 51-210 3-163 (272)
118 3pqc_A Probable GTP-binding pr 99.9 1.1E-22 3.8E-27 162.5 8.3 147 50-211 22-194 (195)
119 3iev_A GTP-binding protein ERA 99.9 1.7E-22 5.7E-27 174.6 8.7 159 48-213 7-184 (308)
120 1nrj_B SR-beta, signal recogni 99.9 6.4E-23 2.2E-27 167.6 3.9 140 49-197 10-170 (218)
121 3iby_A Ferrous iron transport 99.9 2.1E-22 7.3E-27 169.5 6.9 147 53-208 3-164 (256)
122 3i8s_A Ferrous iron transport 99.9 4.6E-22 1.6E-26 169.1 7.4 152 51-211 3-169 (274)
123 2e87_A Hypothetical protein PH 99.8 1.6E-20 5.3E-25 165.3 15.4 159 50-213 166-338 (357)
124 1cip_A Protein (guanine nucleo 99.8 1.9E-21 6.4E-26 170.6 8.5 114 89-212 194-345 (353)
125 3k53_A Ferrous iron transport 99.8 3.6E-21 1.2E-25 163.1 9.8 154 51-212 3-167 (271)
126 3ohm_A Guanine nucleotide-bind 99.8 5.8E-21 2E-25 165.5 9.0 115 89-213 168-320 (327)
127 3gee_A MNME, tRNA modification 99.8 1.6E-20 5.6E-25 170.7 12.0 152 50-210 232-397 (476)
128 2hjg_A GTP-binding protein ENG 99.8 5.8E-21 2E-25 172.3 7.9 158 50-214 174-352 (436)
129 4dcu_A GTP-binding protein ENG 99.8 1.2E-20 4E-25 171.3 9.6 162 49-217 193-375 (456)
130 4dhe_A Probable GTP-binding pr 99.8 5.7E-21 2E-25 156.4 6.5 158 50-213 28-213 (223)
131 2xtz_A Guanine nucleotide-bind 99.8 1.7E-20 5.8E-25 164.5 9.6 113 90-212 185-346 (354)
132 1wf3_A GTP-binding protein; GT 99.8 2.3E-20 7.9E-25 160.6 8.8 153 48-211 4-173 (301)
133 1lnz_A SPO0B-associated GTP-bi 99.8 1E-20 3.5E-25 165.3 5.9 148 53-212 160-331 (342)
134 1zcb_A G alpha I/13; GTP-bindi 99.8 5.5E-20 1.9E-24 161.8 9.6 115 89-213 202-355 (362)
135 1xzp_A Probable tRNA modificat 99.8 6.5E-20 2.2E-24 166.9 10.1 149 52-211 244-405 (482)
136 1mky_A Probable GTP-binding pr 99.8 5.5E-20 1.9E-24 166.1 9.5 174 53-238 3-205 (439)
137 3qq5_A Small GTP-binding prote 99.8 5.1E-20 1.7E-24 165.0 8.0 150 49-211 32-196 (423)
138 4fid_A G protein alpha subunit 99.8 8.2E-20 2.8E-24 158.9 8.4 113 89-211 162-328 (340)
139 3geh_A MNME, tRNA modification 99.8 1.8E-19 6.1E-24 163.3 9.7 150 50-213 223-386 (462)
140 1mky_A Probable GTP-binding pr 99.8 4.1E-18 1.4E-22 153.8 13.8 156 50-212 179-356 (439)
141 2hjg_A GTP-binding protein ENG 99.8 1.5E-19 5.1E-24 163.1 3.4 174 52-238 4-200 (436)
142 1ega_A Protein (GTP-binding pr 99.8 3.9E-18 1.3E-22 146.7 12.0 146 49-211 6-175 (301)
143 2qtf_A Protein HFLX, GTP-bindi 99.8 6.8E-18 2.3E-22 148.7 13.6 157 52-213 179-356 (364)
144 2ged_A SR-beta, signal recogni 99.7 8.1E-19 2.8E-23 140.3 5.8 113 50-171 47-174 (193)
145 3sjy_A Translation initiation 99.7 3E-18 1E-22 153.1 9.9 148 50-211 7-192 (403)
146 2xtp_A GTPase IMAP family memb 99.7 1.1E-17 3.9E-22 140.4 10.5 159 50-213 21-210 (260)
147 3lxx_A GTPase IMAP family memb 99.7 7.5E-18 2.6E-22 139.9 9.1 161 48-211 26-214 (239)
148 1wb1_A Translation elongation 99.7 2.2E-17 7.4E-22 150.6 10.2 146 46-210 14-188 (482)
149 3p26_A Elongation factor 1 alp 99.7 8.9E-18 3E-22 153.3 7.5 140 49-201 31-228 (483)
150 2aka_B Dynamin-1; fusion prote 99.7 1.7E-18 5.9E-23 148.0 2.1 115 88-208 125-250 (299)
151 1g7s_A Translation initiation 99.7 2E-16 7E-21 147.2 15.9 143 50-211 4-218 (594)
152 1u0l_A Probable GTPase ENGC; p 99.7 3.4E-17 1.2E-21 140.8 9.3 124 66-208 32-170 (301)
153 1s0u_A EIF-2-gamma, translatio 99.7 7.5E-17 2.6E-21 144.2 11.4 146 50-211 7-198 (408)
154 2qag_A Septin-2, protein NEDD5 99.7 1.6E-18 5.3E-23 152.8 0.0 157 50-214 36-236 (361)
155 1azs_C GS-alpha; complex (lyas 99.7 2.8E-17 9.5E-22 145.9 7.6 115 89-213 218-387 (402)
156 3izy_P Translation initiation 99.7 5.2E-18 1.8E-22 155.8 2.2 141 52-210 5-167 (537)
157 3cb4_D GTP-binding protein LEP 99.7 7.5E-17 2.6E-21 150.1 10.0 144 51-212 4-183 (599)
158 1jny_A EF-1-alpha, elongation 99.7 1.4E-17 4.8E-22 150.1 4.5 142 50-203 5-205 (435)
159 4dcu_A GTP-binding protein ENG 99.7 7.7E-18 2.6E-22 152.7 2.6 165 52-237 24-219 (456)
160 2ywe_A GTP-binding protein LEP 99.7 1.3E-16 4.6E-21 148.2 10.3 145 50-212 5-185 (600)
161 3t5d_A Septin-7; GTP-binding p 99.7 1.8E-17 6.1E-22 140.6 3.7 154 50-210 7-203 (274)
162 3lxw_A GTPase IMAP family memb 99.7 2E-16 6.7E-21 132.2 10.0 163 48-212 18-209 (247)
163 3j2k_7 ERF3, eukaryotic polype 99.7 2.7E-16 9.3E-21 141.8 11.1 141 48-203 14-217 (439)
164 3izq_1 HBS1P, elongation facto 99.7 6.4E-17 2.2E-21 151.3 7.1 142 49-201 165-362 (611)
165 1pui_A ENGB, probable GTP-bind 99.7 1.3E-16 4.4E-21 129.1 7.9 153 51-211 26-199 (210)
166 1kk1_A EIF2gamma; initiation o 99.7 1.9E-16 6.5E-21 141.7 9.6 147 49-211 8-200 (410)
167 3tr5_A RF-3, peptide chain rel 99.7 1.9E-16 6.4E-21 145.7 9.3 102 50-167 12-148 (528)
168 2elf_A Protein translation elo 99.6 2.6E-16 8.9E-21 138.9 9.2 143 53-212 23-181 (370)
169 1zun_B Sulfate adenylate trans 99.6 1.3E-16 4.3E-21 143.9 6.7 139 50-203 23-216 (434)
170 1f60_A Elongation factor EEF1A 99.6 1.6E-16 5.3E-21 144.2 6.7 138 49-201 5-202 (458)
171 2c78_A Elongation factor TU-A; 99.6 1E-16 3.4E-21 143.3 5.2 134 48-197 8-180 (405)
172 1r5b_A Eukaryotic peptide chai 99.6 8.4E-17 2.9E-21 146.3 4.4 142 49-202 41-243 (467)
173 1d2e_A Elongation factor TU (E 99.6 3.6E-16 1.2E-20 139.4 7.6 144 51-210 3-194 (397)
174 1zo1_I IF2, translation initia 99.6 1E-16 3.4E-21 146.2 2.1 135 52-207 5-163 (501)
175 1udx_A The GTP-binding protein 99.6 4.7E-15 1.6E-19 132.5 12.2 154 54-214 160-328 (416)
176 2j69_A Bacterial dynamin-like 99.6 1.2E-15 4.2E-20 144.7 8.6 113 89-215 175-329 (695)
177 2qag_C Septin-7; cell cycle, c 99.6 1.3E-15 4.4E-20 136.2 6.7 153 52-210 32-226 (418)
178 3avx_A Elongation factor TS, e 99.6 2.3E-15 8E-20 147.0 8.9 147 48-210 293-485 (1289)
179 3def_A T7I23.11 protein; chlor 99.6 6.2E-15 2.1E-19 124.1 9.2 120 50-172 35-170 (262)
180 2qnr_A Septin-2, protein NEDD5 99.6 3.1E-16 1.1E-20 134.8 0.4 153 52-213 19-216 (301)
181 3t34_A Dynamin-related protein 99.6 8.5E-16 2.9E-20 135.1 3.1 114 89-207 137-257 (360)
182 2wsm_A Hydrogenase expression/ 99.6 5.1E-15 1.7E-19 120.8 7.2 85 119-212 129-215 (221)
183 1h65_A Chloroplast outer envel 99.5 1.7E-14 5.9E-19 121.8 9.5 120 50-172 38-173 (270)
184 1wxq_A GTP-binding protein; st 99.5 5.6E-15 1.9E-19 131.5 6.6 46 153-203 214-262 (397)
185 1jwy_B Dynamin A GTPase domain 99.5 8.4E-15 2.9E-19 126.0 7.0 118 89-212 132-263 (315)
186 2hf9_A Probable hydrogenase ni 99.5 1E-15 3.6E-20 125.3 1.2 58 154-211 165-224 (226)
187 3mca_A HBS1, elongation factor 99.5 9.9E-16 3.4E-20 142.8 -0.8 133 48-199 174-371 (592)
188 2h5e_A Peptide chain release f 99.5 8.5E-14 2.9E-18 128.1 12.0 103 49-167 11-148 (529)
189 2x2e_A Dynamin-1; nitration, h 99.5 1.1E-15 3.8E-20 134.1 -1.5 114 89-207 131-254 (353)
190 2dy1_A Elongation factor G; tr 99.5 6.7E-14 2.3E-18 132.2 10.4 101 50-166 8-139 (665)
191 1dar_A EF-G, elongation factor 99.5 1.1E-13 3.7E-18 131.2 10.4 104 48-167 9-143 (691)
192 3p32_A Probable GTPase RV1496/ 99.5 2.3E-14 7.9E-19 125.8 4.3 102 89-211 173-284 (355)
193 1jal_A YCHF protein; nucleotid 99.5 1.5E-12 5.1E-17 114.1 15.1 135 52-194 3-240 (363)
194 2www_A Methylmalonic aciduria 99.4 1.7E-12 5.8E-17 113.6 11.8 102 89-211 168-279 (349)
195 2xex_A Elongation factor G; GT 99.4 1.1E-12 3.8E-17 124.4 10.6 102 50-167 9-141 (693)
196 2rdo_7 EF-G, elongation factor 99.4 2.3E-12 7.9E-17 122.4 12.2 102 50-167 9-148 (704)
197 2dby_A GTP-binding protein; GD 99.3 3E-12 1E-16 112.6 9.8 52 153-204 201-255 (368)
198 1yrb_A ATP(GTP)binding protein 99.3 2.2E-12 7.7E-17 107.8 8.5 113 89-210 110-256 (262)
199 2yv5_A YJEQ protein; hydrolase 99.3 4.4E-12 1.5E-16 108.9 8.7 85 119-207 79-165 (302)
200 2qpt_A EH domain-containing pr 99.3 1.5E-12 5.1E-17 120.4 2.8 111 50-167 64-232 (550)
201 2p67_A LAO/AO transport system 99.2 1.2E-11 4E-16 107.9 8.2 102 89-210 150-260 (341)
202 2qm8_A GTPase/ATPase; G protei 99.2 2.2E-11 7.6E-16 106.0 9.7 102 89-210 149-260 (337)
203 1n0u_A EF-2, elongation factor 99.2 1.7E-11 6E-16 118.5 7.1 112 48-175 16-173 (842)
204 3zvr_A Dynamin-1; hydrolase, D 99.1 2.3E-11 8E-16 115.4 3.5 115 89-208 151-275 (772)
205 3l82_B F-box only protein 4; T 99.1 3.7E-11 1.3E-15 96.8 3.2 105 95-212 109-224 (227)
206 4a9a_A Ribosome-interacting GT 99.1 6.6E-10 2.3E-14 97.8 10.7 146 52-203 73-240 (376)
207 3l2o_B F-box only protein 4; s 98.9 5.9E-10 2E-14 94.0 4.5 105 95-212 194-309 (312)
208 3h2y_A GTPase family protein; 98.7 1.7E-08 5.7E-13 88.8 6.4 108 119-236 69-183 (368)
209 3vqt_A RF-3, peptide chain rel 98.7 5.4E-08 1.8E-12 89.8 10.0 102 52-167 32-166 (548)
210 1ni3_A YCHF GTPase, YCHF GTP-b 98.7 3.6E-07 1.2E-11 80.8 14.3 42 153-194 224-269 (392)
211 2ohf_A Protein OLA1, GTP-bindi 98.7 7.6E-09 2.6E-13 91.5 2.7 80 52-135 23-132 (396)
212 3j25_A Tetracycline resistance 98.4 1.5E-07 5.2E-12 88.4 5.1 99 54-166 5-132 (638)
213 3ec1_A YQEH GTPase; atnos1, at 98.4 5.8E-07 2E-11 79.0 7.4 108 119-236 71-185 (369)
214 2j37_W Signal recognition part 98.3 5.9E-07 2E-11 81.9 5.4 106 89-208 185-310 (504)
215 3ec1_A YQEH GTPase; atnos1, at 98.3 6.2E-08 2.1E-12 85.2 -1.1 138 53-197 164-317 (369)
216 1puj_A YLQF, conserved hypothe 98.3 1E-06 3.6E-11 74.5 6.3 109 119-238 23-145 (282)
217 4fn5_A EF-G 1, elongation fact 98.2 5.9E-06 2E-10 78.5 10.4 100 53-166 15-150 (709)
218 3sop_A Neuronal-specific septi 98.1 1E-05 3.4E-10 68.0 9.3 22 52-74 3-24 (270)
219 3h2y_A GTPase family protein; 98.1 6.7E-08 2.3E-12 85.0 -4.3 133 53-192 162-311 (368)
220 1tq4_A IIGP1, interferon-induc 98.1 2.4E-05 8.3E-10 69.6 10.6 149 52-213 70-255 (413)
221 3cnl_A YLQF, putative uncharac 97.9 2.3E-06 7.9E-11 71.6 1.8 47 52-99 100-155 (262)
222 2qag_B Septin-6, protein NEDD5 97.9 2.7E-05 9.1E-10 69.4 8.6 25 50-75 41-65 (427)
223 1puj_A YLQF, conserved hypothe 97.9 5.9E-06 2E-10 69.9 3.7 49 50-99 119-176 (282)
224 3dm5_A SRP54, signal recogniti 97.8 3E-05 1E-09 69.4 7.1 95 89-198 184-278 (443)
225 3kl4_A SRP54, signal recogniti 97.8 2.6E-05 9E-10 69.7 6.2 97 89-198 181-277 (433)
226 3cnl_A YLQF, putative uncharac 97.7 1.3E-05 4.3E-10 67.1 3.0 104 119-238 21-124 (262)
227 1t9h_A YLOQ, probable GTPase E 97.7 1.4E-05 4.7E-10 68.4 3.2 83 118-204 85-170 (307)
228 2v3c_C SRP54, signal recogniti 97.7 1.8E-05 6.1E-10 70.9 3.8 88 89-190 182-271 (432)
229 2rcn_A Probable GTPase ENGC; Y 97.5 0.00026 9.1E-09 61.6 7.9 82 118-205 129-213 (358)
230 1bif_A 6-phosphofructo-2-kinas 97.3 5.4E-05 1.8E-09 68.4 0.8 85 51-147 39-147 (469)
231 1f5n_A Interferon-induced guan 97.3 0.00019 6.4E-09 66.6 4.3 25 50-75 37-61 (592)
232 1j8m_F SRP54, signal recogniti 97.2 0.00052 1.8E-08 58.3 6.2 98 89-200 182-280 (297)
233 3e70_C DPA, signal recognition 97.0 0.00085 2.9E-08 57.8 5.9 69 119-200 241-309 (328)
234 3szr_A Interferon-induced GTP- 96.4 0.004 1.4E-07 58.0 5.9 21 53-74 47-67 (608)
235 4dzz_A Plasmid partitioning pr 96.3 0.0036 1.2E-07 49.2 4.4 85 89-188 77-162 (206)
236 1ye8_A Protein THEP1, hypothet 96.2 0.0013 4.4E-08 51.5 1.5 21 53-74 2-22 (178)
237 1kgd_A CASK, peripheral plasma 96.1 0.0017 5.7E-08 50.6 1.6 21 53-74 7-27 (180)
238 1lvg_A Guanylate kinase, GMP k 96.0 0.002 7E-08 51.0 1.6 20 54-74 7-26 (198)
239 1zp6_A Hypothetical protein AT 95.8 0.0033 1.1E-07 48.9 2.0 21 53-74 11-31 (191)
240 4gp7_A Metallophosphoesterase; 95.8 0.0032 1.1E-07 48.6 1.8 20 54-74 12-31 (171)
241 3tr0_A Guanylate kinase, GMP k 95.7 0.0031 1.1E-07 49.6 1.6 20 54-74 10-29 (205)
242 3a00_A Guanylate kinase, GMP k 95.7 0.0032 1.1E-07 49.2 1.5 20 54-74 4-23 (186)
243 1s96_A Guanylate kinase, GMP k 95.6 0.0036 1.2E-07 50.6 1.6 20 54-74 19-38 (219)
244 3ney_A 55 kDa erythrocyte memb 95.6 0.0036 1.2E-07 49.8 1.6 21 53-74 21-41 (197)
245 1znw_A Guanylate kinase, GMP k 95.6 0.0037 1.3E-07 49.7 1.5 20 54-74 23-42 (207)
246 1z6g_A Guanylate kinase; struc 95.6 0.0037 1.3E-07 50.3 1.5 20 54-74 26-45 (218)
247 1ex7_A Guanylate kinase; subst 95.5 0.0047 1.6E-07 48.7 1.9 20 54-74 4-23 (186)
248 3c8u_A Fructokinase; YP_612366 95.5 0.0046 1.6E-07 49.2 1.8 22 52-74 23-44 (208)
249 3tau_A Guanylate kinase, GMP k 95.4 0.0047 1.6E-07 49.2 1.6 20 54-74 11-30 (208)
250 3tif_A Uncharacterized ABC tra 95.4 0.0057 1.9E-07 49.9 2.0 20 54-74 34-53 (235)
251 2pcj_A ABC transporter, lipopr 95.2 0.0067 2.3E-07 49.1 2.0 20 54-74 33-52 (224)
252 2qor_A Guanylate kinase; phosp 95.2 0.0066 2.3E-07 48.0 1.8 20 54-74 15-34 (204)
253 1kag_A SKI, shikimate kinase I 95.2 0.0061 2.1E-07 46.6 1.6 20 54-74 7-26 (173)
254 2rcn_A Probable GTPase ENGC; Y 95.2 0.0069 2.4E-07 52.7 2.0 21 53-74 217-237 (358)
255 1htw_A HI0065; nucleotide-bind 95.2 0.0064 2.2E-07 46.5 1.5 20 54-74 36-55 (158)
256 2j41_A Guanylate kinase; GMP, 95.1 0.0064 2.2E-07 47.8 1.5 21 53-74 8-28 (207)
257 3kb2_A SPBC2 prophage-derived 95.1 0.0072 2.5E-07 46.0 1.7 21 53-74 3-23 (173)
258 2cbz_A Multidrug resistance-as 95.1 0.0091 3.1E-07 48.8 2.2 20 54-74 34-53 (237)
259 3lw7_A Adenylate kinase relate 95.1 0.0083 2.8E-07 45.5 1.9 19 53-72 3-21 (179)
260 1b0u_A Histidine permease; ABC 95.0 0.0085 2.9E-07 49.7 2.0 20 54-74 35-54 (262)
261 2onk_A Molybdate/tungstate ABC 95.0 0.0084 2.9E-07 49.1 1.9 20 54-74 27-46 (240)
262 1mv5_A LMRA, multidrug resista 95.0 0.0096 3.3E-07 48.8 2.3 20 54-74 31-50 (243)
263 1sgw_A Putative ABC transporte 95.0 0.0089 3E-07 48.1 2.0 20 54-74 38-57 (214)
264 2bbw_A Adenylate kinase 4, AK4 95.0 0.0093 3.2E-07 48.6 2.2 20 53-73 29-48 (246)
265 2ff7_A Alpha-hemolysin translo 95.0 0.0095 3.2E-07 49.0 2.2 20 54-74 38-57 (247)
266 2bdt_A BH3686; alpha-beta prot 95.0 0.0076 2.6E-07 46.9 1.5 20 54-74 5-24 (189)
267 3gfo_A Cobalt import ATP-bindi 95.0 0.009 3.1E-07 50.0 2.0 20 54-74 37-56 (275)
268 4g1u_C Hemin import ATP-bindin 94.9 0.0095 3.2E-07 49.6 2.1 20 54-74 40-59 (266)
269 3asz_A Uridine kinase; cytidin 94.9 0.0078 2.7E-07 47.7 1.5 22 52-74 7-28 (211)
270 1ly1_A Polynucleotide kinase; 94.9 0.0092 3.2E-07 45.7 1.9 21 53-74 4-24 (181)
271 1g6h_A High-affinity branched- 94.9 0.0094 3.2E-07 49.3 2.0 20 54-74 36-55 (257)
272 4eun_A Thermoresistant glucoki 94.9 0.0082 2.8E-07 47.3 1.6 21 53-74 31-51 (200)
273 3fb4_A Adenylate kinase; psych 94.9 0.009 3.1E-07 47.5 1.8 22 52-74 1-22 (216)
274 1u0l_A Probable GTPase ENGC; p 94.9 0.0095 3.3E-07 50.4 2.0 20 54-74 172-191 (301)
275 2olj_A Amino acid ABC transpor 94.9 0.01 3.4E-07 49.4 2.0 20 54-74 53-72 (263)
276 2pze_A Cystic fibrosis transme 94.9 0.01 3.5E-07 48.2 2.0 20 54-74 37-56 (229)
277 2jaq_A Deoxyguanosine kinase; 94.9 0.0093 3.2E-07 46.7 1.7 21 53-74 2-22 (205)
278 1ji0_A ABC transporter; ATP bi 94.9 0.01 3.5E-07 48.6 2.0 20 54-74 35-54 (240)
279 3dl0_A Adenylate kinase; phosp 94.8 0.0092 3.1E-07 47.5 1.7 22 52-74 1-22 (216)
280 3lnc_A Guanylate kinase, GMP k 94.8 0.0078 2.7E-07 48.6 1.3 19 54-73 30-48 (231)
281 1nks_A Adenylate kinase; therm 94.8 0.012 4.1E-07 45.5 2.3 21 53-74 3-23 (194)
282 2qi9_C Vitamin B12 import ATP- 94.8 0.011 3.7E-07 48.8 2.0 20 54-74 29-48 (249)
283 1t9h_A YLOQ, probable GTPase E 94.8 0.0042 1.4E-07 52.9 -0.5 21 53-74 175-195 (307)
284 2ghi_A Transport protein; mult 94.8 0.012 4E-07 48.8 2.2 20 54-74 49-68 (260)
285 3b85_A Phosphate starvation-in 94.8 0.0092 3.1E-07 47.8 1.5 20 54-74 25-44 (208)
286 1vpl_A ABC transporter, ATP-bi 94.8 0.011 3.8E-07 48.9 2.0 20 54-74 44-63 (256)
287 2d2e_A SUFC protein; ABC-ATPas 94.8 0.01 3.6E-07 48.8 1.9 20 54-74 32-51 (250)
288 2ixe_A Antigen peptide transpo 94.7 0.011 3.8E-07 49.3 2.0 20 54-74 48-67 (271)
289 2ihy_A ABC transporter, ATP-bi 94.7 0.012 4.2E-07 49.2 2.3 20 54-74 50-69 (279)
290 2zu0_C Probable ATP-dependent 94.7 0.011 3.9E-07 49.1 1.9 20 54-74 49-68 (267)
291 2eyu_A Twitching motility prot 94.7 0.0098 3.4E-07 49.3 1.5 21 53-74 27-47 (261)
292 3t61_A Gluconokinase; PSI-biol 94.7 0.01 3.5E-07 46.7 1.5 20 54-74 21-40 (202)
293 2i3b_A HCR-ntpase, human cance 94.7 0.01 3.5E-07 46.7 1.6 20 54-74 4-23 (189)
294 1qhx_A CPT, protein (chloramph 94.7 0.012 4.1E-07 45.1 1.9 20 54-74 6-25 (178)
295 2ehv_A Hypothetical protein PH 94.6 0.012 4E-07 47.7 1.9 19 54-73 33-51 (251)
296 1knq_A Gluconate kinase; ALFA/ 94.6 0.011 3.6E-07 45.4 1.5 21 53-74 10-30 (175)
297 3vaa_A Shikimate kinase, SK; s 94.6 0.013 4.5E-07 46.1 2.1 21 53-74 27-47 (199)
298 2nq2_C Hypothetical ABC transp 94.6 0.012 4.3E-07 48.5 2.0 20 54-74 34-53 (253)
299 3ec2_A DNA replication protein 94.6 0.009 3.1E-07 46.1 1.0 20 54-74 41-60 (180)
300 2chg_A Replication factor C sm 94.6 0.051 1.8E-06 42.4 5.6 20 54-74 41-60 (226)
301 2yz2_A Putative ABC transporte 94.6 0.013 4.3E-07 48.8 2.0 20 54-74 36-55 (266)
302 2yv5_A YJEQ protein; hydrolase 94.6 0.012 4E-07 49.9 1.8 19 54-73 168-186 (302)
303 1np6_A Molybdopterin-guanine d 94.6 0.013 4.3E-07 45.6 1.8 20 54-74 9-28 (174)
304 2v9p_A Replication protein E1; 94.5 0.012 4.1E-07 50.0 1.7 20 54-74 129-148 (305)
305 1p5z_B DCK, deoxycytidine kina 94.5 0.016 5.3E-07 47.8 2.4 24 50-74 23-46 (263)
306 3uie_A Adenylyl-sulfate kinase 94.5 0.012 4E-07 46.5 1.5 21 53-74 27-47 (200)
307 4a74_A DNA repair and recombin 94.5 0.011 3.9E-07 47.1 1.5 20 54-74 28-47 (231)
308 1cke_A CK, MSSA, protein (cyti 94.5 0.013 4.5E-07 46.8 1.8 21 53-74 7-27 (227)
309 3cm0_A Adenylate kinase; ATP-b 94.5 0.017 5.8E-07 44.6 2.3 22 52-74 5-26 (186)
310 2pjz_A Hypothetical protein ST 94.5 0.016 5.5E-07 48.1 2.3 20 54-74 33-52 (263)
311 2if2_A Dephospho-COA kinase; a 94.4 0.014 4.7E-07 46.0 1.8 21 53-74 3-23 (204)
312 2f1r_A Molybdopterin-guanine d 94.4 0.0072 2.5E-07 46.9 0.0 21 53-74 4-24 (171)
313 1lw7_A Transcriptional regulat 94.4 0.012 4.1E-07 51.0 1.4 23 51-74 170-192 (365)
314 1kht_A Adenylate kinase; phosp 94.4 0.017 5.7E-07 44.7 2.1 21 53-74 5-25 (192)
315 1jjv_A Dephospho-COA kinase; P 94.3 0.019 6.3E-07 45.3 2.4 21 53-74 4-24 (206)
316 1e4v_A Adenylate kinase; trans 94.3 0.014 4.8E-07 46.4 1.7 21 53-74 2-22 (214)
317 3nh6_A ATP-binding cassette SU 94.3 0.012 4.1E-07 50.1 1.2 20 54-74 83-102 (306)
318 3sr0_A Adenylate kinase; phosp 94.3 0.015 5E-07 46.5 1.7 22 52-74 1-22 (206)
319 2rhm_A Putative kinase; P-loop 94.3 0.018 6.2E-07 44.6 2.2 21 53-74 7-27 (193)
320 3aez_A Pantothenate kinase; tr 94.3 0.014 4.7E-07 49.8 1.6 22 52-74 91-112 (312)
321 2bbs_A Cystic fibrosis transme 94.2 0.018 6.2E-07 48.5 2.2 20 54-74 67-86 (290)
322 1ukz_A Uridylate kinase; trans 94.2 0.023 7.7E-07 44.6 2.6 22 52-74 16-37 (203)
323 3trf_A Shikimate kinase, SK; a 94.2 0.019 6.4E-07 44.4 2.0 21 53-74 7-27 (185)
324 2plr_A DTMP kinase, probable t 94.1 0.021 7.3E-07 44.8 2.3 22 52-74 5-26 (213)
325 2kjq_A DNAA-related protein; s 94.1 0.015 5E-07 43.9 1.3 20 54-74 39-58 (149)
326 2pt5_A Shikimate kinase, SK; a 94.1 0.018 6.3E-07 43.6 1.8 21 53-74 2-22 (168)
327 1jbk_A CLPB protein; beta barr 94.1 0.019 6.4E-07 43.9 1.8 20 54-74 46-65 (195)
328 2qt1_A Nicotinamide riboside k 94.0 0.023 8E-07 44.8 2.3 22 52-74 22-43 (207)
329 3fvq_A Fe(3+) IONS import ATP- 94.0 0.019 6.5E-07 49.9 1.8 20 54-74 33-52 (359)
330 2vp4_A Deoxynucleoside kinase; 94.0 0.021 7.2E-07 46.1 2.0 22 52-74 21-42 (230)
331 1zd8_A GTP:AMP phosphotransfer 93.9 0.018 6E-07 46.3 1.5 21 52-73 8-28 (227)
332 2z0h_A DTMP kinase, thymidylat 93.9 0.02 6.9E-07 44.5 1.7 21 53-74 2-22 (197)
333 3fwy_A Light-independent proto 93.9 0.68 2.3E-05 39.2 11.4 63 119-189 186-249 (314)
334 1z47_A CYSA, putative ABC-tran 93.9 0.021 7.2E-07 49.6 1.9 20 54-74 44-63 (355)
335 1tev_A UMP-CMP kinase; ploop, 93.9 0.027 9.1E-07 43.6 2.3 22 52-74 4-25 (196)
336 2xb4_A Adenylate kinase; ATP-b 93.9 0.021 7.1E-07 45.9 1.7 21 53-74 2-22 (223)
337 1aky_A Adenylate kinase; ATP:A 93.8 0.021 7.3E-07 45.5 1.8 22 52-74 5-26 (220)
338 2jeo_A Uridine-cytidine kinase 93.8 0.019 6.7E-07 46.7 1.5 21 53-74 27-47 (245)
339 3ozx_A RNAse L inhibitor; ATP 93.8 0.03 1E-06 51.3 2.9 20 54-74 28-47 (538)
340 2pt7_A CAG-ALFA; ATPase, prote 93.8 0.024 8.1E-07 48.7 2.1 20 54-74 174-193 (330)
341 2yyz_A Sugar ABC transporter, 93.8 0.022 7.6E-07 49.5 1.9 20 54-74 32-51 (359)
342 3iij_A Coilin-interacting nucl 93.8 0.023 7.9E-07 43.7 1.8 20 54-74 14-33 (180)
343 2it1_A 362AA long hypothetical 93.8 0.023 7.8E-07 49.5 1.9 20 54-74 32-51 (362)
344 1rj9_A FTSY, signal recognitio 93.8 0.02 6.8E-07 48.6 1.5 20 53-73 104-123 (304)
345 1ak2_A Adenylate kinase isoenz 93.7 0.021 7.3E-07 46.1 1.6 22 52-74 17-38 (233)
346 3tlx_A Adenylate kinase 2; str 93.7 0.028 9.7E-07 45.8 2.3 24 50-74 28-51 (243)
347 2cdn_A Adenylate kinase; phosp 93.7 0.03 1E-06 43.9 2.4 23 51-74 20-42 (201)
348 3rlf_A Maltose/maltodextrin im 93.7 0.024 8.2E-07 49.6 1.9 20 54-74 32-51 (381)
349 3jvv_A Twitching mobility prot 93.7 0.021 7.1E-07 49.6 1.5 21 53-74 125-145 (356)
350 3tui_C Methionine import ATP-b 93.7 0.024 8.3E-07 49.3 1.9 20 54-74 57-76 (366)
351 1ixz_A ATP-dependent metallopr 93.7 0.022 7.4E-07 46.5 1.6 20 54-74 52-71 (254)
352 2gza_A Type IV secretion syste 93.7 0.023 7.8E-07 49.4 1.8 21 53-74 177-197 (361)
353 1g29_1 MALK, maltose transport 93.6 0.024 8.2E-07 49.5 1.9 20 54-74 32-51 (372)
354 2pbr_A DTMP kinase, thymidylat 93.6 0.024 8.4E-07 43.8 1.8 21 53-74 2-22 (195)
355 1v43_A Sugar-binding transport 93.6 0.025 8.5E-07 49.4 1.9 20 54-74 40-59 (372)
356 2v54_A DTMP kinase, thymidylat 93.6 0.029 9.9E-07 43.9 2.2 21 53-74 6-26 (204)
357 2x8a_A Nuclear valosin-contain 93.6 0.023 7.7E-07 47.4 1.5 20 54-74 47-66 (274)
358 1y63_A LMAJ004144AAA protein; 93.6 0.029 9.9E-07 43.5 2.0 21 53-74 12-32 (184)
359 2w0m_A SSO2452; RECA, SSPF, un 93.5 0.026 8.9E-07 44.9 1.8 20 54-74 26-45 (235)
360 1rz3_A Hypothetical protein rb 93.5 0.024 8.2E-07 44.7 1.5 22 52-74 23-44 (201)
361 1via_A Shikimate kinase; struc 93.5 0.028 9.5E-07 43.1 1.8 20 54-74 7-26 (175)
362 1gtv_A TMK, thymidylate kinase 93.5 0.012 4E-07 46.6 -0.3 21 53-74 2-22 (214)
363 3q5d_A Atlastin-1; G protein, 93.5 0.059 2E-06 48.2 4.2 26 48-74 64-89 (447)
364 1gvn_B Zeta; postsegregational 93.5 0.026 9E-07 47.3 1.8 22 52-74 34-55 (287)
365 2c95_A Adenylate kinase 1; tra 93.5 0.028 9.5E-07 43.6 1.8 21 53-74 11-31 (196)
366 3b9q_A Chloroplast SRP recepto 93.4 0.025 8.4E-07 47.9 1.6 21 53-74 102-122 (302)
367 1xjc_A MOBB protein homolog; s 93.4 0.03 1E-06 43.3 1.9 20 54-74 7-26 (169)
368 2yvu_A Probable adenylyl-sulfa 93.4 0.029 1E-06 43.4 1.9 22 52-74 14-35 (186)
369 1sq5_A Pantothenate kinase; P- 93.4 0.025 8.6E-07 47.9 1.5 22 52-74 81-102 (308)
370 2ewv_A Twitching motility prot 93.3 0.025 8.6E-07 49.3 1.5 21 53-74 138-158 (372)
371 1zak_A Adenylate kinase; ATP:A 93.3 0.029 9.9E-07 44.8 1.7 21 53-74 7-27 (222)
372 2ze6_A Isopentenyl transferase 93.3 0.03 1E-06 46.0 1.9 20 54-74 4-23 (253)
373 3d31_A Sulfate/molybdate ABC t 93.3 0.021 7.2E-07 49.4 1.0 20 54-74 29-48 (348)
374 4e22_A Cytidylate kinase; P-lo 93.3 0.033 1.1E-06 45.7 2.1 20 53-73 29-48 (252)
375 3be4_A Adenylate kinase; malar 93.3 0.029 9.9E-07 44.8 1.7 22 52-74 6-27 (217)
376 2bwj_A Adenylate kinase 5; pho 93.2 0.031 1.1E-06 43.4 1.8 21 53-74 14-34 (199)
377 2wwf_A Thymidilate kinase, put 93.2 0.031 1.1E-06 43.9 1.8 21 53-74 12-32 (212)
378 3gd7_A Fusion complex of cysti 93.2 0.033 1.1E-06 48.9 2.1 20 54-74 50-69 (390)
379 1e6c_A Shikimate kinase; phosp 93.2 0.033 1.1E-06 42.3 1.8 20 54-74 5-24 (173)
380 1odf_A YGR205W, hypothetical 3 93.2 0.033 1.1E-06 46.9 1.9 24 50-74 30-53 (290)
381 1qf9_A UMP/CMP kinase, protein 93.2 0.039 1.3E-06 42.5 2.2 21 53-74 8-28 (194)
382 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.039 1.3E-06 45.4 2.3 21 53-74 6-26 (260)
383 1nn5_A Similar to deoxythymidy 93.1 0.033 1.1E-06 43.9 1.7 21 53-74 11-31 (215)
384 2p65_A Hypothetical protein PF 93.1 0.025 8.6E-07 43.1 1.0 20 54-74 46-65 (187)
385 3kta_A Chromosome segregation 93.1 0.035 1.2E-06 42.7 1.8 18 54-72 29-46 (182)
386 1in4_A RUVB, holliday junction 93.0 0.03 1E-06 47.9 1.5 20 54-74 54-73 (334)
387 1cr0_A DNA primase/helicase; R 93.0 0.03 1E-06 46.8 1.5 20 54-74 38-57 (296)
388 2vli_A Antibiotic resistance p 93.0 0.03 1E-06 42.9 1.4 21 53-74 7-27 (183)
389 1iy2_A ATP-dependent metallopr 93.0 0.032 1.1E-06 46.3 1.6 20 54-74 76-95 (278)
390 1uf9_A TT1252 protein; P-loop, 93.0 0.041 1.4E-06 42.9 2.1 22 52-74 9-30 (203)
391 3bos_A Putative DNA replicatio 93.0 0.032 1.1E-06 44.5 1.5 20 54-74 55-74 (242)
392 2pez_A Bifunctional 3'-phospho 93.0 0.041 1.4E-06 42.3 2.1 21 53-74 7-27 (179)
393 3tqc_A Pantothenate kinase; bi 92.9 0.04 1.4E-06 47.1 2.1 23 51-74 92-114 (321)
394 2cvh_A DNA repair and recombin 92.9 0.038 1.3E-06 43.6 1.8 20 54-74 23-42 (220)
395 2iyv_A Shikimate kinase, SK; t 92.9 0.039 1.3E-06 42.5 1.8 20 54-74 5-24 (184)
396 1p9r_A General secretion pathw 92.9 0.033 1.1E-06 49.4 1.5 21 53-74 169-189 (418)
397 1oxx_K GLCV, glucose, ABC tran 92.8 0.021 7.1E-07 49.5 0.2 20 54-74 34-53 (353)
398 2oap_1 GSPE-2, type II secreti 92.8 0.039 1.3E-06 50.3 2.0 20 54-74 263-282 (511)
399 1vht_A Dephospho-COA kinase; s 92.7 0.051 1.7E-06 43.1 2.4 21 52-73 5-25 (218)
400 1n0w_A DNA repair protein RAD5 92.7 0.041 1.4E-06 44.1 1.9 20 54-74 27-46 (243)
401 2grj_A Dephospho-COA kinase; T 92.7 0.058 2E-06 42.4 2.7 26 48-74 9-34 (192)
402 1nij_A Hypothetical protein YJ 92.7 0.033 1.1E-06 47.4 1.3 20 54-74 7-26 (318)
403 2og2_A Putative signal recogni 92.6 0.038 1.3E-06 48.0 1.6 21 53-74 159-179 (359)
404 4eaq_A DTMP kinase, thymidylat 92.6 0.048 1.6E-06 44.1 2.0 22 52-74 27-48 (229)
405 4b4t_K 26S protease regulatory 92.6 0.083 2.9E-06 46.9 3.7 20 54-74 209-228 (428)
406 4b4t_J 26S protease regulatory 92.5 0.097 3.3E-06 46.1 4.1 20 54-74 185-204 (405)
407 1lv7_A FTSH; alpha/beta domain 92.5 0.041 1.4E-06 44.9 1.6 20 54-74 48-67 (257)
408 1njg_A DNA polymerase III subu 92.5 0.041 1.4E-06 43.5 1.5 20 54-74 48-67 (250)
409 2w58_A DNAI, primosome compone 92.5 0.042 1.4E-06 43.0 1.5 21 53-74 56-76 (202)
410 3umf_A Adenylate kinase; rossm 92.5 0.06 2E-06 43.3 2.5 20 54-74 32-51 (217)
411 4b4t_L 26S protease subunit RP 92.4 0.15 5.1E-06 45.4 5.2 20 54-74 218-237 (437)
412 2npi_A Protein CLP1; CLP1-PCF1 92.4 0.041 1.4E-06 49.4 1.5 20 54-74 141-160 (460)
413 1uj2_A Uridine-cytidine kinase 92.3 0.056 1.9E-06 44.1 2.2 24 50-74 21-44 (252)
414 2p5t_B PEZT; postsegregational 92.3 0.043 1.5E-06 45.0 1.5 22 52-74 33-54 (253)
415 2yhs_A FTSY, cell division pro 92.3 0.043 1.5E-06 49.6 1.6 20 53-73 295-314 (503)
416 1m7g_A Adenylylsulfate kinase; 92.3 0.045 1.5E-06 43.4 1.5 22 52-74 26-47 (211)
417 3b60_A Lipid A export ATP-bind 92.3 0.054 1.9E-06 50.0 2.2 20 54-74 372-391 (582)
418 2obl_A ESCN; ATPase, hydrolase 92.2 0.049 1.7E-06 47.1 1.8 21 53-74 73-93 (347)
419 1zuh_A Shikimate kinase; alpha 92.2 0.056 1.9E-06 41.0 1.8 20 54-74 10-29 (168)
420 4a82_A Cystic fibrosis transme 92.1 0.066 2.3E-06 49.4 2.6 20 54-74 370-389 (578)
421 3nwj_A ATSK2; P loop, shikimat 92.1 0.049 1.7E-06 44.8 1.5 20 54-74 51-70 (250)
422 2yl4_A ATP-binding cassette SU 92.0 0.058 2E-06 50.0 2.2 20 54-74 373-392 (595)
423 4b4t_I 26S protease regulatory 92.0 0.12 4.3E-06 45.8 4.1 20 54-74 219-238 (437)
424 3vfd_A Spastin; ATPase, microt 92.0 0.1 3.5E-06 45.4 3.6 20 54-74 151-170 (389)
425 3qf4_B Uncharacterized ABC tra 91.9 0.065 2.2E-06 49.7 2.3 20 54-74 384-403 (598)
426 3b5x_A Lipid A export ATP-bind 91.9 0.061 2.1E-06 49.7 2.1 20 54-74 372-391 (582)
427 1yqt_A RNAse L inhibitor; ATP- 91.8 0.066 2.2E-06 49.1 2.2 20 54-74 50-69 (538)
428 1ltq_A Polynucleotide kinase; 91.7 0.063 2.2E-06 44.8 1.9 21 53-74 4-24 (301)
429 2dpy_A FLII, flagellum-specifi 91.7 0.061 2.1E-06 48.0 1.8 21 53-74 159-179 (438)
430 3h4m_A Proteasome-activating n 91.6 0.058 2E-06 44.6 1.5 20 54-74 54-73 (285)
431 2dr3_A UPF0273 protein PH0284; 91.6 0.066 2.3E-06 42.9 1.8 20 54-74 26-45 (247)
432 3co5_A Putative two-component 91.6 0.068 2.3E-06 39.6 1.7 20 54-74 30-49 (143)
433 1f2t_A RAD50 ABC-ATPase; DNA d 91.6 0.072 2.5E-06 40.0 1.9 19 54-73 26-44 (149)
434 1nlf_A Regulatory protein REPA 91.5 0.066 2.3E-06 44.4 1.7 20 54-74 33-52 (279)
435 2qz4_A Paraplegin; AAA+, SPG7, 91.5 0.063 2.1E-06 43.6 1.6 20 54-74 42-61 (262)
436 3qf4_A ABC transporter, ATP-bi 91.5 0.074 2.5E-06 49.2 2.2 20 54-74 372-391 (587)
437 3b9p_A CG5977-PA, isoform A; A 91.5 0.06 2.1E-06 44.8 1.5 20 54-74 57-76 (297)
438 2f6r_A COA synthase, bifunctio 91.5 0.084 2.9E-06 44.0 2.3 22 51-73 75-96 (281)
439 2qby_A CDC6 homolog 1, cell di 91.5 0.061 2.1E-06 46.1 1.5 20 54-74 48-67 (386)
440 3n70_A Transport activator; si 91.4 0.077 2.6E-06 39.4 1.9 20 54-74 27-46 (145)
441 2qmh_A HPR kinase/phosphorylas 91.3 0.08 2.7E-06 42.1 1.9 27 185-211 146-172 (205)
442 3euj_A Chromosome partition pr 91.3 0.066 2.3E-06 48.3 1.6 20 54-74 32-51 (483)
443 3gmt_A Adenylate kinase; ssgci 91.3 0.075 2.6E-06 43.2 1.7 26 48-74 5-30 (230)
444 1l8q_A Chromosomal replication 91.2 0.066 2.3E-06 45.3 1.5 20 54-74 40-59 (324)
445 3j16_B RLI1P; ribosome recycli 91.2 0.076 2.6E-06 49.4 1.9 20 54-74 106-125 (608)
446 3qf7_A RAD50; ABC-ATPase, ATPa 91.2 0.077 2.6E-06 46.1 1.9 19 54-73 26-44 (365)
447 3zvl_A Bifunctional polynucleo 91.1 0.15 5E-06 45.1 3.7 21 53-74 260-280 (416)
448 3r20_A Cytidylate kinase; stru 91.1 0.08 2.7E-06 43.1 1.8 22 52-74 10-31 (233)
449 1svm_A Large T antigen; AAA+ f 91.0 0.072 2.4E-06 46.6 1.5 20 54-74 172-191 (377)
450 3bk7_A ABC transporter ATP-bin 91.0 0.091 3.1E-06 48.9 2.3 20 54-74 120-139 (607)
451 1sxj_E Activator 1 40 kDa subu 91.0 0.074 2.5E-06 45.4 1.5 20 54-74 39-58 (354)
452 3syl_A Protein CBBX; photosynt 90.8 0.078 2.7E-06 44.3 1.5 20 54-74 70-89 (309)
453 2px0_A Flagellar biosynthesis 90.8 0.077 2.6E-06 44.7 1.5 62 119-191 212-273 (296)
454 3t15_A Ribulose bisphosphate c 90.8 0.079 2.7E-06 44.4 1.5 20 54-74 39-58 (293)
455 3cf0_A Transitional endoplasmi 90.7 0.078 2.7E-06 44.5 1.5 20 54-74 52-71 (301)
456 1fnn_A CDC6P, cell division co 90.7 0.081 2.8E-06 45.5 1.6 20 54-74 47-66 (389)
457 2qen_A Walker-type ATPase; unk 90.7 0.083 2.8E-06 44.6 1.6 20 54-74 34-53 (350)
458 1ofh_A ATP-dependent HSL prote 90.5 0.096 3.3E-06 43.5 1.9 20 54-74 53-72 (310)
459 2fna_A Conserved hypothetical 90.5 0.085 2.9E-06 44.6 1.5 21 53-74 32-52 (357)
460 4f4c_A Multidrug resistance pr 90.4 0.11 3.9E-06 52.6 2.5 21 53-74 1107-1127(1321)
461 3ozx_A RNAse L inhibitor; ATP 90.4 0.1 3.6E-06 47.7 2.0 20 54-74 297-316 (538)
462 3ake_A Cytidylate kinase; CMP 90.3 0.095 3.3E-06 40.9 1.5 21 53-74 4-24 (208)
463 3foz_A TRNA delta(2)-isopenten 90.3 0.12 4.2E-06 43.8 2.3 20 54-74 13-32 (316)
464 2ocp_A DGK, deoxyguanosine kin 90.2 0.12 4.1E-06 41.7 2.1 22 52-74 3-24 (241)
465 1d2n_A N-ethylmaleimide-sensit 90.2 0.11 3.6E-06 42.8 1.8 21 53-74 66-86 (272)
466 1vma_A Cell division protein F 90.1 0.1 3.4E-06 44.3 1.6 63 119-192 222-284 (306)
467 1pzn_A RAD51, DNA repair and r 90.0 0.11 3.7E-06 44.9 1.7 20 54-74 134-153 (349)
468 3a8t_A Adenylate isopentenyltr 90.0 0.12 4E-06 44.5 1.9 21 53-74 42-62 (339)
469 1tue_A Replication protein E1; 90.0 0.078 2.7E-06 42.4 0.7 20 54-74 61-80 (212)
470 1yqt_A RNAse L inhibitor; ATP- 90.0 0.12 4.2E-06 47.2 2.2 20 54-74 315-334 (538)
471 1sxj_C Activator 1 40 kDa subu 89.9 0.1 3.4E-06 44.5 1.5 20 54-74 49-68 (340)
472 4b4t_H 26S protease regulatory 89.9 0.2 6.7E-06 44.9 3.3 20 54-74 246-265 (467)
473 3bk7_A ABC transporter ATP-bin 89.9 0.12 4E-06 48.1 1.9 20 54-74 385-404 (607)
474 2v1u_A Cell division control p 89.8 0.093 3.2E-06 45.0 1.2 20 54-74 47-66 (387)
475 3crm_A TRNA delta(2)-isopenten 89.8 0.12 4.1E-06 44.2 1.8 21 53-74 7-27 (323)
476 4fcw_A Chaperone protein CLPB; 89.8 0.11 3.7E-06 43.4 1.5 20 54-74 50-69 (311)
477 3d3q_A TRNA delta(2)-isopenten 89.8 0.12 4.1E-06 44.5 1.8 21 53-74 9-29 (340)
478 3exa_A TRNA delta(2)-isopenten 89.6 0.13 4.4E-06 43.8 1.8 20 54-74 6-25 (322)
479 1q3t_A Cytidylate kinase; nucl 89.6 0.13 4.4E-06 41.5 1.8 21 53-74 18-38 (236)
480 3ux8_A Excinuclease ABC, A sub 89.6 0.12 4.1E-06 48.5 1.8 16 54-69 351-366 (670)
481 1sxj_D Activator 1 41 kDa subu 89.6 0.11 3.9E-06 44.0 1.5 20 54-74 61-80 (353)
482 3end_A Light-independent proto 89.5 2.8 9.5E-05 34.8 10.2 63 119-189 179-242 (307)
483 1xwi_A SKD1 protein; VPS4B, AA 89.5 0.11 3.9E-06 44.1 1.5 20 54-74 48-67 (322)
484 3eph_A TRNA isopentenyltransfe 89.4 0.46 1.6E-05 41.8 5.3 20 54-74 5-24 (409)
485 3j16_B RLI1P; ribosome recycli 89.3 0.14 4.7E-06 47.6 1.9 20 54-74 381-400 (608)
486 3uk6_A RUVB-like 2; hexameric 89.2 0.14 4.6E-06 43.9 1.7 20 54-74 73-92 (368)
487 2qby_B CDC6 homolog 3, cell di 89.0 0.13 4.4E-06 44.2 1.5 20 54-74 48-67 (384)
488 3eie_A Vacuolar protein sortin 89.0 0.13 4.4E-06 43.6 1.5 20 54-74 54-73 (322)
489 3pfi_A Holliday junction ATP-d 89.0 0.13 4.6E-06 43.5 1.5 20 54-74 58-77 (338)
490 4edh_A DTMP kinase, thymidylat 89.0 0.19 6.4E-06 40.2 2.3 22 52-74 7-28 (213)
491 3lda_A DNA repair protein RAD5 88.9 0.14 4.9E-06 45.0 1.7 42 54-97 181-222 (400)
492 2r62_A Cell division protease 88.9 0.063 2.2E-06 44.0 -0.5 20 54-74 47-66 (268)
493 2qgz_A Helicase loader, putati 88.9 0.14 4.7E-06 43.4 1.5 21 53-74 154-174 (308)
494 3qks_A DNA double-strand break 88.9 0.16 5.5E-06 40.1 1.9 16 54-69 26-41 (203)
495 3uc9_A Increased recombination 88.8 0.21 7.2E-06 40.4 2.5 26 48-74 24-51 (233)
496 2orw_A Thymidine kinase; TMTK, 88.8 0.16 5.4E-06 39.5 1.7 16 54-69 6-21 (184)
497 2bjv_A PSP operon transcriptio 88.6 0.17 5.7E-06 41.4 1.8 20 54-74 32-51 (265)
498 3pxg_A Negative regulator of g 88.6 0.16 5.4E-06 45.6 1.8 20 54-74 204-223 (468)
499 3tqf_A HPR(Ser) kinase; transf 88.5 0.17 5.8E-06 39.3 1.7 28 185-212 128-155 (181)
500 2z4s_A Chromosomal replication 88.5 0.14 4.9E-06 45.5 1.5 20 54-74 133-152 (440)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=2e-38 Score=261.25 Aligned_cols=153 Identities=22% Similarity=0.335 Sum_probs=126.3
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee---------------EEEEEeCCCCc--cccCCCcccc
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------------FIVYSDTNHTQ--RCLTPMPFCS 109 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------------~i~i~Dt~g~~--~~~~~~~~~~ 109 (250)
++.+.+||+|+|++|||||||++ +|+. +.|...+.+|++ .+++|||+|++ +.+++.|++
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~-r~~~--~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~- 84 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLIT-RFMY--DSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIR- 84 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHH-HHHH--SCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHT-
T ss_pred CCCCcEEEEEECcCCcCHHHHHH-HHHh--CCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhc-
Confidence 34456789999999999999998 8987 566666666654 67799999997 677788888
Q ss_pred ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810 110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVE 189 (250)
Q Consensus 110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 189 (250)
+++++++|||+++++||+.+..|+..+.+.. .+++|++|||||+|+.+.+.|+.+++.++++.++++|+|
T Consensus 85 ---------~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e 154 (216)
T 4dkx_A 85 ---------DSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIE 154 (216)
T ss_dssp ---------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEE
T ss_pred ---------cccEEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEE
Confidence 9999999999999999999999999997653 468999999999999988999999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 190 TSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
|||++|.||+++|+.|++.+....
T Consensus 155 ~SAktg~nV~e~F~~i~~~i~~~~ 178 (216)
T 4dkx_A 155 TSAKAGYNVKQLFRRVAAALPGME 178 (216)
T ss_dssp EBTTTTBSHHHHHHHHHHHC----
T ss_pred EeCCCCcCHHHHHHHHHHHHHhhh
Confidence 999999999999999998886543
No 2
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.97 E-value=2.5e-31 Score=215.32 Aligned_cols=153 Identities=26% Similarity=0.361 Sum_probs=128.4
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
....+||+|+|++|||||||++ +|.+ ..+...+.++.. .+.+|||+|++ ..++..++.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--- 84 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTL-QFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR--- 84 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHH-HHHH--SCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH---
T ss_pred CCceEEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHh---
Confidence 4456889999999999999998 7876 333333333321 57799999986 344455555
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++..+++.++++++++|
T Consensus 85 -------~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (206)
T 2bov_A 85 -------SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 157 (206)
T ss_dssp -------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEC
T ss_pred -------hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEe
Confidence 7999999999999999999999999998776556899999999999987778899999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~ 213 (250)
|++|.||+++|.+|++.+....
T Consensus 158 a~~g~gi~~l~~~l~~~i~~~~ 179 (206)
T 2bov_A 158 AKTRANVDKVFFDLMREIRARK 179 (206)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHcc
Confidence 9999999999999999887654
No 3
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.97 E-value=1.7e-30 Score=208.15 Aligned_cols=150 Identities=14% Similarity=0.203 Sum_probs=125.5
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee-------------EEEEEeCCCCccccCCCccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-------------FIVYSDTNHTQRCLTPMPFCSQVENF 114 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-------------~i~i~Dt~g~~~~~~~~~~~~~~~~~ 114 (250)
.-..+||+|+|++|||||||++ +|++ ..+...+.++.. .+.+|||+|+++.. +++
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~---~~~------ 84 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVH-RYLT--GTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQ---FAA------ 84 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHH-HHHH--SSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHH---HHH------
T ss_pred CCCeeEEEEECCCCCCHHHHHH-HHhc--CCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhh---eec------
Confidence 4567889999999999999998 7877 444333333322 56789999987433 556
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCc--cCCCccCHHHHHHHHHHhC-CeEEEEe
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL--ERRRQVTHSDGKKLAYAWG-VKFVETS 191 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl--~~~~~v~~~~~~~~~~~~~-~~~~evS 191 (250)
++|++++|||++++.||+.+..|+..+.......++|++|||||+|+ ...+.++.+++.++++.++ ++|+++|
T Consensus 85 ----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 160 (184)
T 3ihw_A 85 ----WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETC 160 (184)
T ss_dssp ----HCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEB
T ss_pred ----CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEec
Confidence 79999999999999999999999999977644468999999999999 4567899999999999997 8999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~ 213 (250)
|++|.||+++|.++++.+.+.+
T Consensus 161 a~~~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 161 ATYGLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TTTTBTHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 4
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-30 Score=213.56 Aligned_cols=153 Identities=27% Similarity=0.394 Sum_probs=124.1
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccc---cccCcee-----------EEEEEeCCCCcc---ccCCCcccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ---TYHPDVF-----------FIVYSDTNHTQR---CLTPMPFCSQV 111 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~---~~~~~~~-----------~i~i~Dt~g~~~---~~~~~~~~~~~ 111 (250)
...+||+|+|++|||||||++ +|++....+.+ +.+.+.. .+.+|||+|++. .+...+++
T Consensus 35 ~~~~kVvlvG~~~vGKSSLl~-r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~--- 110 (211)
T 2g3y_A 35 NTYYRVVLIGEQGVGKSTLAN-IFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ--- 110 (211)
T ss_dssp CCEEEEEEECCTTSSHHHHHH-HHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCC---
T ss_pred CCceEEEEECCCCCCHHHHHH-HHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHh---
Confidence 355889999999999999998 88864332322 2232221 456899999863 44555666
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
.+|++|+|||++++.||+.+..|+..+.+.....++|++|||||+|+.+.+.++.+++..++..++++|+|||
T Consensus 111 -------~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~S 183 (211)
T 2g3y_A 111 -------VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETS 183 (211)
T ss_dssp -------CCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECB
T ss_pred -------hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEe
Confidence 8999999999999999999999998886543345799999999999987788999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~ 212 (250)
|++|.||+++|+++++.+...
T Consensus 184 Ak~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 184 AAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp TTTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999987543
No 5
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.97 E-value=2.6e-30 Score=209.93 Aligned_cols=156 Identities=21% Similarity=0.269 Sum_probs=128.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
..+||+|+|++|||||||++ +|.+.. ....++.+.++. .+.+|||+|++ ..++..++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------ 79 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLL-RFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYR------ 79 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHH-HHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGT------
T ss_pred cceEEEEECCCCCCHHHHHH-HHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhcc------
Confidence 45789999999999999998 787631 112233332221 67899999986 456666776
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..++...+++++++||++
T Consensus 80 ----~~d~vilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (206)
T 2bcg_Y 80 ----GSHGIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALD 154 (206)
T ss_dssp ----TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTT
T ss_pred ----CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCC
Confidence 899999999999999999999999998665 346799999999999987778889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhh
Q psy5810 195 VYKTDELLVGIARQAGLNKKRNK 217 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~~~~ 217 (250)
|.||+++|.++.+.+.+......
T Consensus 155 g~gi~~l~~~l~~~i~~~~~~~~ 177 (206)
T 2bcg_Y 155 STNVEDAFLTMARQIKESMSQQN 177 (206)
T ss_dssp CTTHHHHHHHHHHHHHHHCCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999887655443
No 6
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.97 E-value=2.1e-30 Score=205.91 Aligned_cols=154 Identities=22% Similarity=0.281 Sum_probs=127.2
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
.+.+||+++|++|||||||++ +|.+ ..+...+.++.+ .+.+|||+|++ ..++..+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---- 76 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTI-QFVE--GQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSI---- 76 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHH-HHHH--SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTT----
T ss_pred CceEEEEEECcCCCCHHHHHH-HHHc--CCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHh----
Confidence 356789999999999999998 7876 334444433332 56799999986 455666777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++++|||++++++|+.+..|+.++.+.....++|+++|+||+|+.+.+.++.+++.++++.++++|+++||
T Consensus 77 ------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 150 (181)
T 3t5g_A 77 ------DINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSA 150 (181)
T ss_dssp ------TCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred ------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEec
Confidence 89999999999999999999999999977766678999999999999888899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
++|.|++++|.++++.+......
T Consensus 151 ~~~~~v~~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 151 KENQTAVDVFRRIILEAEKMDGA 173 (181)
T ss_dssp TSHHHHHHHHHHHHHHHHTC---
T ss_pred CCCCCHHHHHHHHHHHHHHhcCC
Confidence 99999999999999988765543
No 7
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.97 E-value=2.7e-30 Score=206.11 Aligned_cols=152 Identities=21% Similarity=0.338 Sum_probs=126.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
..+||+++|++|||||||++ ++.+ ..+...+.++.. .+.+|||+|++ ..++..++.
T Consensus 3 ~~~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----- 74 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTI-QLIQ--NHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR----- 74 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHH-HHHH--SSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHH-----
T ss_pred cEEEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHh-----
Confidence 35789999999999999998 7876 334443333332 46789999986 444555565
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++|++++|||++++.+|+.+..|+..+.......+.|+++|+||+|+.+ +.+..+++..+++.++++++++||+
T Consensus 75 -----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~ 148 (189)
T 4dsu_A 75 -----TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAK 148 (189)
T ss_dssp -----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTT
T ss_pred -----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCC
Confidence 7999999999999999999999999998876667899999999999964 5678889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhh
Q psy5810 194 LVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
+|.|++++|+++.+.+......
T Consensus 149 ~g~gi~~l~~~l~~~~~~~~~~ 170 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKHKEK 170 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999988765433
No 8
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.97 E-value=4.1e-30 Score=201.12 Aligned_cols=151 Identities=26% Similarity=0.349 Sum_probs=113.4
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee----------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT 117 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~ 117 (250)
.+||+++|++|||||||++ ++.+... ...++.+.+.. .+.+|||+|++ ..++..++.
T Consensus 2 ~~ki~~vG~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~--------- 71 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALAR-IFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMA--------- 71 (166)
T ss_dssp CCEEEEEESTTSSHHHHHH-HHCCC----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred eEEEEEECCCCCCHHHHHH-HHcCccccCCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhh---------
Confidence 3679999999999999998 7876421 11222222221 67799999986 556777777
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
.+|++++|||++++++|+.+..|+..+.+.....++|+++|+||+|+.+.+.++.+++..++...+++++++||++|.|
T Consensus 72 -~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 150 (166)
T 3q72_A 72 -MGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHN 150 (166)
T ss_dssp --CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBS
T ss_pred -hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCC
Confidence 8999999999999999999999999997765567899999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy5810 198 TDELLVGIARQAGLN 212 (250)
Q Consensus 198 I~~lf~~l~~~i~~~ 212 (250)
++++|+++++.+.+.
T Consensus 151 i~~l~~~l~~~~~~~ 165 (166)
T 3q72_A 151 VQALFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999987654
No 9
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.97 E-value=2.7e-30 Score=205.60 Aligned_cols=151 Identities=26% Similarity=0.368 Sum_probs=128.6
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
....+||+|+|++|||||||++ +|.+ ..+...+.++.. .+.+|||+|++ ..++..+++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~--- 88 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTI-QFFQ--KIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMR--- 88 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHH-HHHH--SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHH---
T ss_pred CCCceEEEEECCCCCCHHHHHH-HHHh--CCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHh---
Confidence 4567889999999999999998 7876 344444444332 46679999986 344455555
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+.+.++.+++.++++.++++|+++|
T Consensus 89 -------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 161 (183)
T 3kkq_A 89 -------TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETS 161 (183)
T ss_dssp -------HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEB
T ss_pred -------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEec
Confidence 7999999999999999999999999998776678899999999999988889999999999999999999999
Q ss_pred cC-CCCCHHHHHHHHHHHHHh
Q psy5810 192 VG-LVYKTDELLVGIARQAGL 211 (250)
Q Consensus 192 a~-~~~~I~~lf~~l~~~i~~ 211 (250)
|+ ++.|++++|+++.+.+.+
T Consensus 162 a~~~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 162 AKDPPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp CSSSCBSHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhh
Confidence 99 999999999999988764
No 10
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.97 E-value=2.5e-30 Score=209.54 Aligned_cols=154 Identities=25% Similarity=0.338 Sum_probs=127.2
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
.+.+||+|+|++|||||||++ +|.+ ..+...+.++.+ .+.+|||+|++ ..++..+++
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---- 94 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAH-QFVE--GEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFII---- 94 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHH-HHHH--SCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTT----
T ss_pred CCcEEEEEECCCCcCHHHHHH-HHHh--CCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHh----
Confidence 456889999999999999998 7887 444444444332 56799999986 556677777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++..+++.++++|+++||
T Consensus 95 ------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 168 (201)
T 3oes_A 95 ------GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSA 168 (201)
T ss_dssp ------TCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred ------cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeC
Confidence 89999999999999999999999999977655678999999999999888889999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
++|.|++++|.+|++.+.+....
T Consensus 169 ~~~~~v~~l~~~l~~~i~~~~~~ 191 (201)
T 3oes_A 169 RENQLTQGIFTKVIQEIARVENS 191 (201)
T ss_dssp TCHHHHHHHHHHHHHHHHHC---
T ss_pred CCCCCHHHHHHHHHHHHHhhhhh
Confidence 99999999999999988765444
No 11
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.97 E-value=3.5e-30 Score=204.10 Aligned_cols=150 Identities=15% Similarity=0.196 Sum_probs=121.1
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccccccc---ccccCce----------eEEEEEeCCCCccccCCCcccccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV---QTYHPDV----------FFIVYSDTNHTQRCLTPMPFCSQVENFV 115 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~---~~~~~~~----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~ 115 (250)
...+||+++|++|||||||++ +|.++ .+. ++.+... ..+.+|||+|+++ ..+++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~-~l~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~---~~~~~------- 71 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIH-RFLTG--SYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPD---AKFSG------- 71 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHH-HHHHS--CCCCCSSCSSSEEEEEEEETTEEEEEEEEECSSSCC---HHHHH-------
T ss_pred CCceEEEEECCCCCCHHHHHH-HHHhC--CCCCcCCCcceeEEEEEEECCEEEEEEEEECCCCch---hHHHH-------
Confidence 356789999999999999998 78773 332 2222211 1577899999985 34555
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCc--cCCCccCHHHHHHHHHHh-CCeEEEE
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADL--ERRRQVTHSDGKKLAYAW-GVKFVET 190 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl--~~~~~v~~~~~~~~~~~~-~~~~~ev 190 (250)
++|++|+|||+++++||+.+..|+..+..... ..++|+++||||+|+ ...+.++.+++.++++.+ +++|+++
T Consensus 72 ---~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 2iwr_A 72 ---WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYET 148 (178)
T ss_dssp ---HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEE
T ss_pred ---hCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEE
Confidence 79999999999999999999998766654432 357899999999999 356788999999999887 6889999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 191 SVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
||++|.|++++|+++++.+.+...
T Consensus 149 Sa~~~~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 149 XATYGLNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred eccccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999998876543
No 12
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.97 E-value=3.7e-30 Score=204.83 Aligned_cols=153 Identities=21% Similarity=0.369 Sum_probs=106.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
..+||+|+|++|||||||++ +|.+.. ....++.+.++ ..+.+|||+|++ ..++..+++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------ 79 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLF-RFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYR------ 79 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTT------
T ss_pred CceEEEEECCCCCCHHHHHH-HHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHh------
Confidence 35789999999999999998 787631 11222222211 257899999986 566777777
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++.++++++++||++
T Consensus 80 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 154 (183)
T 2fu5_C 80 ----GAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKA 154 (183)
T ss_dssp ----TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC--
T ss_pred ----cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCC
Confidence 899999999999999999999999998664 346799999999999987788899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q psy5810 195 VYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~ 214 (250)
|.||+++|.++++.+.+...
T Consensus 155 ~~~i~~l~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 155 NINVENAFFTLARDIKAKMD 174 (183)
T ss_dssp -CCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 99999999999998876543
No 13
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=209.42 Aligned_cols=155 Identities=28% Similarity=0.347 Sum_probs=124.6
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcccccccc--ccccCce-----------eEEEEEeCCCCcc---ccCCCcccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV--QTYHPDV-----------FFIVYSDTNHTQR---CLTPMPFCSQV 111 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~--~~~~~~~-----------~~i~i~Dt~g~~~---~~~~~~~~~~~ 111 (250)
....+||+|+|++|||||||++ +|.+....+. ++.+.+. ..+.+|||+|++. .++..+++
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~--- 95 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAG-TFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQ--- 95 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHH-HTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHH---
T ss_pred CCcEEEEEEECCCCCCHHHHHH-HHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhc---
Confidence 3456889999999999999998 7865322221 1111111 1577899999863 24445555
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++|++|+|||++++.||+.+..|+.++.......++|+++||||+|+.+.+.++.+++.++++.++++|+|+|
T Consensus 96 -------~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~S 168 (195)
T 3cbq_A 96 -------TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETS 168 (195)
T ss_dssp -------HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEB
T ss_pred -------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEc
Confidence 7999999999999999999999999987664446899999999999987788999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~ 213 (250)
|++|.||+++|+++++.+...+
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999886543
No 14
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.97 E-value=5e-30 Score=201.15 Aligned_cols=151 Identities=28% Similarity=0.366 Sum_probs=120.5
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccc--cccCc-----------eeEEEEEeCCCCcc---ccCCCccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ--TYHPD-----------VFFIVYSDTNHTQR---CLTPMPFCSQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~--~~~~~-----------~~~i~i~Dt~g~~~---~~~~~~~~~~~~~~ 114 (250)
.+||+++|++|||||||++ +|.+....... +.+.. ...+.+|||+|++. .++..++.
T Consensus 2 ~~ki~ivG~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~------ 74 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAG-TFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQ------ 74 (169)
T ss_dssp EEEEEEECSTTSSHHHHHH-HHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHH------
T ss_pred cEEEEEECCCCCCHHHHHH-HHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhc------
Confidence 4789999999999999998 78653111111 11111 11677999999873 24555566
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++++|+.+..|+.++.+.....++|+++|+||+|+.+.+.++.+++.++++.++++|+++||++
T Consensus 75 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T 3q85_A 75 ----TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAAL 150 (169)
T ss_dssp ----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTT
T ss_pred ----cCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCcc
Confidence 7999999999999999999999999998765556899999999999987788999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy5810 195 VYKTDELLVGIARQAGLN 212 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~ 212 (250)
|.|++++|+++++.+..+
T Consensus 151 ~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 151 HHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TBSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999987654
No 15
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.97 E-value=3.7e-30 Score=206.46 Aligned_cols=152 Identities=24% Similarity=0.292 Sum_probs=121.6
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCcccc-CCCcccccc
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQRCL-TPMPFCSQV 111 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~~~~-~~~~~~~~~ 111 (250)
+....+||+|+|++|||||||++ +|++ ..+...+.++++ .+.+|||+|+++.. ...+++
T Consensus 17 ~~~~~~ki~vvG~~~vGKTsLi~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~--- 90 (187)
T 3c5c_A 17 QGPLEVNLAILGRRGAGKSALTV-KFLT--KRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLN--- 90 (187)
T ss_dssp ---CEEEEEEECCTTSSHHHHHH-HHHH--SSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCTHHHHT---
T ss_pred CCCceEEEEEECCCCCcHHHHHH-HHHh--CCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhHHHHHh---
Confidence 45567889999999999999998 7877 334443333332 56789999987321 233444
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVE 189 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 189 (250)
++|++++|||++++++|+.+..|+..+..... ..++|+++||||+|+.+.+.++.+++.++++.++++|++
T Consensus 91 -------~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 163 (187)
T 3c5c_A 91 -------WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFE 163 (187)
T ss_dssp -------TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEE
T ss_pred -------hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEE
Confidence 89999999999999999999999999876532 258999999999999877889999999999999999999
Q ss_pred Eec-CCCCCHHHHHHHHHHHHHh
Q psy5810 190 TSV-GLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 190 vSa-~~~~~I~~lf~~l~~~i~~ 211 (250)
+|| ++|.||+++|+++++.+.+
T Consensus 164 ~Sa~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 164 VSACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp CCSSSCSHHHHHHHHHHHHHHHC
T ss_pred EeecCccccHHHHHHHHHHHHhh
Confidence 999 8999999999999987753
No 16
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.97 E-value=1.2e-29 Score=199.89 Aligned_cols=152 Identities=29% Similarity=0.415 Sum_probs=117.3
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee-----------EEEEEeCCCCcc----ccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF-----------FIVYSDTNHTQR----CLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~-----------~i~i~Dt~g~~~----~~~~~~~~~~~~~ 113 (250)
..+||+++|++|||||||++ +|.+... ...++.+.+.. .+.+|||+|++. .+...+++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~----- 76 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLAS-LFAGKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQ----- 76 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHH-HHHCC-----CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTT-----
T ss_pred eEEEEEEECCCCccHHHHHH-HHhcCCCccccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcc-----
Confidence 35789999999999999998 7877411 11123333321 577999999863 22233444
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
.+|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++..++..++++++++||+
T Consensus 77 -----~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 151 (175)
T 2nzj_A 77 -----GGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSAT 151 (175)
T ss_dssp -----SCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTT
T ss_pred -----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecC
Confidence 799999999999999999999999988765445689999999999998778899999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy5810 194 LVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~ 212 (250)
+|.||+++|++|++.+...
T Consensus 152 ~g~gi~~l~~~l~~~~~~~ 170 (175)
T 2nzj_A 152 LQHNVAELFEGVVRQLRLR 170 (175)
T ss_dssp TTBSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999988654
No 17
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=4.9e-30 Score=206.90 Aligned_cols=152 Identities=24% Similarity=0.321 Sum_probs=126.8
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCcc-ccCCCcccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQR-CLTPMPFCSQVEN 113 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~~-~~~~~~~~~~~~~ 113 (250)
...+||+|+|++|||||||++ +|.+ ..+...+.++.+ .+.+|||+|++. .++..++.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~----- 97 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVV-RFLT--KRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQREGHMR----- 97 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHH-HHHH--SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCCHHHHHHHH-----
T ss_pred CCceEEEEECCCCCCHHHHHH-HHHh--CCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCcccchhhhhc-----
Confidence 345789999999999999998 7877 333333333221 578999999875 33444555
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
.+|++++|||++++++|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++.++++.++++++++||+
T Consensus 98 -----~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 172 (196)
T 2atv_A 98 -----WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSAC 172 (196)
T ss_dssp -----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTT
T ss_pred -----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCC
Confidence 799999999999999999999999999876666789999999999998778899999999999999999999999
Q ss_pred CCC-CHHHHHHHHHHHHHhhh
Q psy5810 194 LVY-KTDELLVGIARQAGLNK 213 (250)
Q Consensus 194 ~~~-~I~~lf~~l~~~i~~~~ 213 (250)
+|. |++++|++|++.+.+..
T Consensus 173 ~g~~gi~~l~~~l~~~i~~~~ 193 (196)
T 2atv_A 173 TGEGNITEIFYELCREVRRRR 193 (196)
T ss_dssp TCTTCHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHhhc
Confidence 999 99999999999887543
No 18
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=1.5e-29 Score=203.99 Aligned_cols=152 Identities=27% Similarity=0.416 Sum_probs=121.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccc---cccCcee-----------EEEEEeCCCCc---cccCCCcccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ---TYHPDVF-----------FIVYSDTNHTQ---RCLTPMPFCSQVEN 113 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~---~~~~~~~-----------~i~i~Dt~g~~---~~~~~~~~~~~~~~ 113 (250)
.+||+|+|++|||||||++ +|++....+.+ +.+.+.. .+.+|||+|++ +.+...+++
T Consensus 6 ~~kv~lvG~~~vGKSsL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~----- 79 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLAN-IFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQ----- 79 (192)
T ss_dssp EEEEEEECSTTSSHHHHHH-HHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHH-----
T ss_pred eEEEEEECCCCCCHHHHHH-HHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcc-----
Confidence 5789999999999999998 78753222222 2222221 45689999875 344455555
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
.+|++++|||+++++||+.+..|+..+.......++|+++||||+|+...+.+..+++..++..++++|+|+||+
T Consensus 80 -----~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~ 154 (192)
T 2cjw_A 80 -----VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAA 154 (192)
T ss_dssp -----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTT
T ss_pred -----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccc
Confidence 799999999999999999999999888665444679999999999997778888899999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q psy5810 194 LVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~~ 213 (250)
+|.||+++|.++++.+....
T Consensus 155 ~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 155 VQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp TTBSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999886543
No 19
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.97 E-value=1.3e-29 Score=203.91 Aligned_cols=153 Identities=22% Similarity=0.334 Sum_probs=126.4
Q ss_pred cccccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccc
Q psy5810 46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCS 109 (250)
Q Consensus 46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~ 109 (250)
....+.+||+++|++|||||||++ +|.+ ..+...+.++++ .+.+|||+|++ ..++..+++
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~- 93 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLL-AFSK--GEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYA- 93 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHH-HHHH--SCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCT-
T ss_pred cccceeeEEEEECcCCCCHHHHHH-HHhc--CCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhcc-
Confidence 345567889999999999999998 8887 444444444432 45799999986 456666777
Q ss_pred ccccccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC--CCccCHHHHHHHHHHhCCe
Q psy5810 110 QVENFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER--RRQVTHSDGKKLAYAWGVK 186 (250)
Q Consensus 110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~~~~ 186 (250)
++|++++|||++++.+|+.+ ..|+..+... ..++|+++|+||+|+.+ .+.+..+++.++++.+++.
T Consensus 94 ---------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 162 (194)
T 3reg_A 94 ---------DSDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCV 162 (194)
T ss_dssp ---------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCS
T ss_pred ---------CCcEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCC
Confidence 89999999999999999997 6798888654 46899999999999964 3778999999999999998
Q ss_pred -EEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 187 -FVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 187 -~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
|+++||++|.||+++|+++++.+.+..
T Consensus 163 ~~~~~Sa~~~~gi~~l~~~l~~~i~~~~ 190 (194)
T 3reg_A 163 AYIEASSVAKIGLNEVFEKSVDCIFSNK 190 (194)
T ss_dssp CEEECBTTTTBSHHHHHHHHHHHHHCSC
T ss_pred EEEEeecCCCCCHHHHHHHHHHHHHhcC
Confidence 999999999999999999999887654
No 20
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.97 E-value=3.6e-29 Score=198.02 Aligned_cols=151 Identities=23% Similarity=0.298 Sum_probs=126.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+|+|++|||||||++ ++.+. .+...+.++. ..+.+|||+|++ ..++..++.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---- 80 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLL-RFADN--TFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYR---- 80 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHH-HHCSC--C---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGT----
T ss_pred cceEEEEECCCCCCHHHHHH-HHhcC--CCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhc----
Confidence 55789999999999999998 88873 3322222222 157899999986 455666676
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++++|||++++.+|+.+..|+..+... ..++|+++|+||+|+.+.+.+..+++..++...+++++++||
T Consensus 81 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~--~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (181)
T 3tw8_B 81 ------GTHGVIVVYDVTSAESFVNVKRWLHEINQN--CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSA 152 (181)
T ss_dssp ------TCSEEEEEEETTCHHHHHHHHHHHHHHHHH--CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBT
T ss_pred ------cCCEEEEEEECCCHHHHHHHHHHHHHHHHh--CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEEC
Confidence 899999999999999999999999999664 368999999999999888888999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
++|.|++++|+++.+.+.+....
T Consensus 153 ~~~~gi~~l~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 153 KENVNVEEMFNCITELVLRAKKD 175 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999988765443
No 21
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.97 E-value=8.8e-30 Score=208.82 Aligned_cols=152 Identities=15% Similarity=0.239 Sum_probs=125.9
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
...+||+|+|++|||||||++ +|.+ ..+...+.++++ .+.+|||+|++ ..++..+++
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---- 97 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQ-VLAK--DCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYS---- 97 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHH-HHHH--SCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCT----
T ss_pred cceEEEEEECcCCCCHHHHHH-HHhc--CCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcC----
Confidence 456789999999999999998 7887 444444444432 57799999987 566677777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHH-HHHHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHH
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKK-AEDMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKL 179 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~-~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~ 179 (250)
++|++|+|||++++++|+. +..|+..+... ..++|++|||||+|+.++ +.++.+++.++
T Consensus 98 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 169 (214)
T 3q3j_B 98 ------DSDAVLLCFDISRPETVDSALKKWRTEILDY--CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI 169 (214)
T ss_dssp ------TCSEEEEEEETTCTHHHHHHHTHHHHHHHHH--CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred ------CCeEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH
Confidence 8999999999999999999 68999999765 368999999999999653 77999999999
Q ss_pred HHHhCC-eEEEEecCCCCC-HHHHHHHHHHHHHhhhhh
Q psy5810 180 AYAWGV-KFVETSVGLVYK-TDELLVGIARQAGLNKKR 215 (250)
Q Consensus 180 ~~~~~~-~~~evSa~~~~~-I~~lf~~l~~~i~~~~~~ 215 (250)
++.+++ +|+||||++|.| |+++|.++++.+......
T Consensus 170 ~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 170 AKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp HHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC----
T ss_pred HHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCcC
Confidence 999999 899999999998 999999999988765443
No 22
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.3e-29 Score=206.11 Aligned_cols=151 Identities=17% Similarity=0.265 Sum_probs=126.5
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
...+||+|+|++|||||||++ +|.+ ..+...+.+++ ..+.+|||+|++ ..++..+++
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~--- 97 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVR-RFTQ--GLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR--- 97 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHH-HHHH--SSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST---
T ss_pred ccceEEEEECcCCCCHHHHHH-HHHh--CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh---
Confidence 345789999999999999998 7877 33333333332 157899999986 445566666
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++..+++|+++|
T Consensus 98 -------~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~S 169 (201)
T 2ew1_A 98 -------SANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETS 169 (201)
T ss_dssp -------TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECC
T ss_pred -------cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEe
Confidence 899999999999999999999999998664 346789999999999987788899999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~ 213 (250)
|++|.||+++|.++++.+.+..
T Consensus 170 a~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 170 AKESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999887643
No 23
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.97 E-value=2.7e-29 Score=201.72 Aligned_cols=154 Identities=23% Similarity=0.301 Sum_probs=125.5
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
....+||+|+|++|||||||++ +|.+.. ....++.+.+.. .+.+|||+|++ ..++..++.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---- 92 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLL-QFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYR---- 92 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHH-HHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHT----
T ss_pred cCcceEEEEECcCCCCHHHHHH-HHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhc----
Confidence 3456889999999999999998 787631 112223332221 67899999986 445556666
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++|+|||++++.+|+.+..|+..+.+. ...++|+++|+||+|+.+.+.++.+++.++++.++++++++||
T Consensus 93 ------~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 165 (191)
T 2a5j_A 93 ------GAAGALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSA 165 (191)
T ss_dssp ------TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECT
T ss_pred ------cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeC
Confidence 899999999999999999999999998664 3468999999999999877788999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~ 213 (250)
++|.||+++|++|++.+.++.
T Consensus 166 ~~~~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 166 KTACNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999887643
No 24
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.97 E-value=8.7e-30 Score=199.05 Aligned_cols=147 Identities=27% Similarity=0.432 Sum_probs=123.7
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
.+||+++|++|||||||++ ++.+ ..+...+.++.+ .+.+|||+|++ ..++..++.
T Consensus 3 ~~ki~v~G~~~~GKssli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~------ 73 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTV-QFVQ--GIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMK------ 73 (167)
T ss_dssp EEEEEEECSTTSSHHHHHH-HHHH--CCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHH------
T ss_pred eeEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhc------
Confidence 5789999999999999998 7877 333333333322 57899999986 344445555
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-CCeEEEEecC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVETSVG 193 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~evSa~ 193 (250)
++|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+.+.++.+++..+++.+ +++++++||+
T Consensus 74 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 149 (167)
T 1c1y_A 74 ----NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAK 149 (167)
T ss_dssp ----HCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTT
T ss_pred ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCC
Confidence 79999999999999999999999999987766678999999999999877888899999999988 7899999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q psy5810 194 LVYKTDELLVGIARQAG 210 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~ 210 (250)
+|.|++++|+++.+.+.
T Consensus 150 ~~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 150 SKINVNEIFYDLVRQIN 166 (167)
T ss_dssp TTBSHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999998764
No 25
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.97 E-value=7.4e-30 Score=207.09 Aligned_cols=151 Identities=17% Similarity=0.255 Sum_probs=123.8
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCc----e-----------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD----V-----------FFIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~----~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
...+||+|+|++|||||||++ +|.+ ..+...+.++ + ..+.+|||+|++ ..++..+++
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~--- 100 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQ-RFKT--GAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYR--- 100 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHH-HHHH--SCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHT---
T ss_pred ccceEEEEECcCCCCHHHHHH-HHhh--CCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHh---
Confidence 345789999999999999998 7876 3333333222 2 167799999986 344555666
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEE
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVET 190 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~ev 190 (250)
++|++|+|||++++.+|+.+..|+..+.+. ...++|++||+||+|+.+.+.++.+++.++++.+++ +++++
T Consensus 101 -------~~d~iilv~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 172 (201)
T 2hup_A 101 -------SANGAILAYDITKRSSFLSVPHWIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIET 172 (201)
T ss_dssp -------TCSEEEEEEETTBHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEEC
T ss_pred -------hCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEE
Confidence 899999999999999999999999998765 346799999999999987788999999999999999 89999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 191 SVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
||++|.||+++|++|++.+.+..
T Consensus 173 SA~~g~gi~~l~~~l~~~i~~~~ 195 (201)
T 2hup_A 173 SAKDSSNVEEAFLRVATELIMRH 195 (201)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHT
T ss_pred eCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999887543
No 26
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.97 E-value=1.7e-29 Score=199.92 Aligned_cols=153 Identities=23% Similarity=0.331 Sum_probs=127.2
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
.+.+||+++|++|||||||++ +|.+. .+...+.++.+ .+.+|||+|++ ..++..++.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~---- 79 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTI-QFIQS--YFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMR---- 79 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHH-HHHHS--SCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHH----
T ss_pred CCceEEEEECCCCCCHHHHHH-HHHhC--cCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHh----
Confidence 356789999999999999998 78773 33333333321 57789999986 334444555
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+.+.++.+++..++...+++++++||
T Consensus 80 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 153 (181)
T 2fn4_A 80 ------AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASA 153 (181)
T ss_dssp ------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred ------hCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecC
Confidence 79999999999999999999999999976666678999999999999877888899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
++|.|++++|++|.+.+.+...
T Consensus 154 ~~~~gv~~l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 154 KLRLNVDEAFEQLVRAVRKYQE 175 (181)
T ss_dssp TTTBSHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999998875543
No 27
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.96 E-value=1.5e-29 Score=199.86 Aligned_cols=151 Identities=22% Similarity=0.273 Sum_probs=123.3
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
...+||+|+|++|||||||++ ++.+.. ....++.+.+.. .+.+|||+|++ ..++..++.
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----- 86 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLH-QFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYR----- 86 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHH-HHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHH-----
T ss_pred ccceEEEEECCCCCCHHHHHH-HHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhc-----
Confidence 456889999999999999998 787631 112233332221 57899999986 344445555
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++|++++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++.++++++++||+
T Consensus 87 -----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 160 (179)
T 1z0f_A 87 -----GAAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAK 160 (179)
T ss_dssp -----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred -----cCCEEEEEEeCcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 899999999999999999999999988665 34689999999999998777888999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy5810 194 LVYKTDELLVGIARQAGL 211 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~ 211 (250)
+|.|++++|+++++.+.+
T Consensus 161 ~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 161 TGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TCTTHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999987754
No 28
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.96 E-value=2.3e-29 Score=199.56 Aligned_cols=155 Identities=23% Similarity=0.259 Sum_probs=124.6
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
.....+||+++|++|||||||++ ++.+.. ....++.+.+. ..+.+|||+|++ ..++..++.
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--- 83 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVL-RFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYR--- 83 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHH-HHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHT---
T ss_pred CCccceEEEEECcCCCCHHHHHH-HHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhc---
Confidence 34556889999999999999998 787631 11123333222 167899999986 455555666
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++.++++++++|
T Consensus 84 -------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 155 (181)
T 2efe_B 84 -------GAAAAIIVFDVTNQASFERAKKWVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETS 155 (181)
T ss_dssp -------TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECC
T ss_pred -------cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEE
Confidence 899999999999999999999999998765 346899999999999987788889999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~ 213 (250)
|++|.|++++|++|++.+.+..
T Consensus 156 a~~g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 156 AKTATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp SSSCTTHHHHHHHHHHTCC---
T ss_pred CCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999998776543
No 29
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.96 E-value=1.3e-29 Score=201.60 Aligned_cols=153 Identities=26% Similarity=0.361 Sum_probs=127.2
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
....+||+|+|++|||||||++ ++.+ ..+...+.++.. .+.+|||+|++ ..++..++.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--- 88 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTL-QFMY--DEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR--- 88 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHH-HHHH--SCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH---
T ss_pred CCCceEEEEECCCCCCHHHHHH-HHhh--CCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhc---
Confidence 4567889999999999999998 7876 333333333321 57799999986 344455555
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
.+|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++.++++.++++++++|
T Consensus 89 -------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 161 (187)
T 2a9k_A 89 -------SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETS 161 (187)
T ss_dssp -------HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred -------cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeC
Confidence 7999999999999999999999999998876666899999999999987778889999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~ 213 (250)
|+++.|++++|++|.+.+.+.+
T Consensus 162 a~~~~gi~~l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 162 AKTRANVDKVFFDLMREIRARK 183 (187)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999887543
No 30
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.96 E-value=3.2e-29 Score=196.52 Aligned_cols=150 Identities=19% Similarity=0.309 Sum_probs=121.3
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
..+||+++|++|||||||++ ++.+.. ....++.+.+.. .+.+|||+|++ ..++..++.
T Consensus 5 ~~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~------ 77 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVL-RYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYR------ 77 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHH-HHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSST------
T ss_pred cceEEEEECcCCCCHHHHHH-HHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhc------
Confidence 45789999999999999998 787631 122233332221 57899999986 566677777
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++.+++.++++..+++++++||++
T Consensus 78 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 152 (170)
T 1z08_A 78 ----DSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQ 152 (170)
T ss_dssp ----TCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTT
T ss_pred ----cCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCC
Confidence 8999999999999999999999999886542 35789999999999987788899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy5810 195 VYKTDELLVGIARQAGL 211 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~ 211 (250)
|.|++++|+++++.+.+
T Consensus 153 ~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 153 NKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TBSHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988753
No 31
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.96 E-value=2.9e-29 Score=201.55 Aligned_cols=154 Identities=19% Similarity=0.312 Sum_probs=126.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+|+|++|||||||++ +|.+. .+...+.++. ..+.+|||+|++ ..++..++.
T Consensus 15 ~~~ki~v~G~~~~GKSsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---- 87 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLL-RFADD--TYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR---- 87 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHH-HHHHS--CCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHT----
T ss_pred cceEEEEECcCCCCHHHHHH-HHHcC--CCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHh----
Confidence 45789999999999999998 78773 3332222221 157899999986 444455666
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++.+++..++++++++||
T Consensus 88 ------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 160 (196)
T 3tkl_A 88 ------GAHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSA 160 (196)
T ss_dssp ------TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECT
T ss_pred ------hCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeC
Confidence 899999999999999999999999998665 3468999999999999888889999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKRNK 217 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~~~ 217 (250)
++|.|++++|.+|++.+.+......
T Consensus 161 ~~g~gv~~l~~~l~~~i~~~~~~~~ 185 (196)
T 3tkl_A 161 KNATNVEQSFMTMAAEIKKRMGPGA 185 (196)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC----
T ss_pred CCCCCHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999887655443
No 32
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-29 Score=206.86 Aligned_cols=153 Identities=20% Similarity=0.208 Sum_probs=122.3
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccccc----ccccCce-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+|+|++|||||||++ +|.+. .+. ++.+.+. ..+.+|||+|++ ..++..+++
T Consensus 12 ~~~ki~v~G~~~vGKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---- 84 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLS-RFTKN--EFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYR---- 84 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHH-HHHHC--CCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTT----
T ss_pred eeeEEEEECcCCCCHHHHHH-HHhcC--CCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhc----
Confidence 45789999999999999998 78773 332 2222222 167899999986 456666777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|++||+||+|+.+.+.++.+++..+++..+++|+++||
T Consensus 85 ------~~d~vilV~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 157 (223)
T 3cpj_B 85 ------GAVGALIVYDISKSSSYENCNHWLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSA 157 (223)
T ss_dssp ------TCCEEEEEEC-CCHHHHHHHHHHHHHHHHH-CC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCC
T ss_pred ------cCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 899999999999999999999999998664 3467899999999999877788999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKRN 216 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~~ 216 (250)
++|.||+++|++|++.+.+.....
T Consensus 158 ~~~~gi~~l~~~l~~~i~~~~~~~ 181 (223)
T 3cpj_B 158 LNSENVDKAFEELINTIYQKVSKH 181 (223)
T ss_dssp C-CCCHHHHHHHHHHHHTTCC---
T ss_pred CCCCCHHHHHHHHHHHHHHHhhhc
Confidence 999999999999999988755443
No 33
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.96 E-value=1.6e-29 Score=206.09 Aligned_cols=151 Identities=20% Similarity=0.354 Sum_probs=121.6
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
..+||+++|++|||||||++ +|.+. .+...+.++++ .+.+|||+|++ ..++..++.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----- 79 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLI-CYTSN--KFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYR----- 79 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHH-HHHHS--CCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGT-----
T ss_pred ceEEEEEECCCCCCHHHHHH-HHhcC--CCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcc-----
Confidence 56889999999999999998 78763 33333332221 67899999986 566677777
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCc--------cCHHHHHHHHHHhC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQ--------VTHSDGKKLAYAWG 184 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------v~~~~~~~~~~~~~ 184 (250)
++|++|+|||++++++|+.+. .|+..+.... +++|++||+||+|+.+.+. ++.+++.++++.++
T Consensus 80 -----~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (212)
T 2j0v_A 80 -----GADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG 152 (212)
T ss_dssp -----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT
T ss_pred -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC
Confidence 899999999999999999997 7999886652 4899999999999965443 47889999999999
Q ss_pred C-eEEEEecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 185 V-KFVETSVGLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 185 ~-~~~evSa~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
+ +|+++||++|.||+++|+++++.+.+....
T Consensus 153 ~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~ 184 (212)
T 2j0v_A 153 AAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR 184 (212)
T ss_dssp CSEEEECCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred CceEEEccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence 6 899999999999999999999988765443
No 34
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.96 E-value=1.6e-29 Score=197.36 Aligned_cols=148 Identities=26% Similarity=0.359 Sum_probs=123.3
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
.+||+++|++|||||||++ ++.+. .+...+.++.. .+.+|||+|++ ..++..++.
T Consensus 4 ~~~i~v~G~~~~GKssl~~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~------ 74 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTL-QFMYD--EFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFR------ 74 (168)
T ss_dssp EEEEEEECSTTSSHHHHHH-HHHHS--CCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHH------
T ss_pred eEEEEEECCCCCCHHHHHH-HHHhC--ccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhh------
Confidence 5789999999999999998 78763 33333333221 57799999986 344455555
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++++|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++.++++.++++++++||++
T Consensus 75 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (168)
T 1u8z_A 75 ----SGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKT 150 (168)
T ss_dssp ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTT
T ss_pred ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCC
Confidence 7999999999999999999999999998876666899999999999987778899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy5810 195 VYKTDELLVGIARQAGL 211 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~ 211 (250)
|.|++++|+++++.+.+
T Consensus 151 ~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 151 RANVDKVFFDLMREIRA 167 (168)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 35
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.96 E-value=7.7e-29 Score=198.62 Aligned_cols=151 Identities=21% Similarity=0.276 Sum_probs=125.3
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
..+||+|+|++|||||||++ +|.+.. ....++.+.++. .+.+|||+|++ ..++..++.
T Consensus 21 ~~~ki~vvG~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------ 93 (189)
T 2gf9_A 21 YMFKLLLIGNSSVGKTSFLF-RYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR------ 93 (189)
T ss_dssp EEEEEEEECSTTSSHHHHHH-HHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT------
T ss_pred ceeEEEEECCCCCCHHHHHH-HHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc------
Confidence 45789999999999999998 787731 122333333221 67899999986 455556666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++.++++.++++++++||++
T Consensus 94 ----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 168 (189)
T 2gf9_A 94 ----GAMGFLLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKE 168 (189)
T ss_dssp ----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCC
Confidence 899999999999999999999999998664 346899999999999987788888999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy5810 195 VYKTDELLVGIARQAGLN 212 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~ 212 (250)
|.|++++|++|++.+.++
T Consensus 169 g~gi~~l~~~l~~~i~~~ 186 (189)
T 2gf9_A 169 NINVKQVFERLVDVICEK 186 (189)
T ss_dssp TBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 36
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.96 E-value=1.6e-29 Score=199.91 Aligned_cols=152 Identities=17% Similarity=0.138 Sum_probs=122.8
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce------------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV------------FFIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
+.+||+|+|++|||||||++ +|.+.. ....++.+.+. ..+.+|||+|++ ..++..+++
T Consensus 5 ~~~ki~v~G~~~~GKssl~~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~----- 78 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTT-CFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIY----- 78 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHH-HHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHT-----
T ss_pred ceEEEEEECcCCCCHHHHHH-HHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHh-----
Confidence 45789999999999999998 787731 11223333222 267899999987 344455566
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCc-EEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKA-VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~p-iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++|++++|||++++.+|+.+..|+..+..... ..+.| +++|+||+|+.+.+.++.+++.++++.++++++++|
T Consensus 79 -----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 153 (178)
T 2hxs_A 79 -----GAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVS 153 (178)
T ss_dssp -----TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEEC
T ss_pred -----hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEe
Confidence 89999999999999999999999998866421 12445 899999999987778889999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~ 212 (250)
|++|.||+++|++|++.+.+.
T Consensus 154 a~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 154 AKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp TTTCTTHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999988654
No 37
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=9.4e-29 Score=198.74 Aligned_cols=148 Identities=21% Similarity=0.338 Sum_probs=122.7
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
....+||+++|++|||||||++ +|.+. .+...+.++. ..+.+|||+|++ ..++..+++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~--- 88 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLM-SYAND--AFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP--- 88 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHH-HHHHS--SCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCT---
T ss_pred CCceEEEEEECCCCCCHHHHHH-HHhcC--CCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcC---
Confidence 3466889999999999999998 78773 3333333332 157889999986 455666666
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHH
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKK 178 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~ 178 (250)
++|++++|||++++++|+.+. .|+..+.+. ..++|+++|+||+|+.+. +.++.+++.+
T Consensus 89 -------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 159 (194)
T 2atx_A 89 -------MTDVFLICFSVVNPASFQNVKEEWVPELKEY--APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQK 159 (194)
T ss_dssp -------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHH
T ss_pred -------CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHH
Confidence 899999999999999999997 799988764 258999999999999653 5788999999
Q ss_pred HHHHhCC-eEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 179 LAYAWGV-KFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 179 ~~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+++.+++ +|+++||++|.||+++|+++++.+.
T Consensus 160 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 160 LAKEIGACCYVECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp HHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence 9999998 8999999999999999999998775
No 38
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.96 E-value=4.8e-29 Score=198.68 Aligned_cols=152 Identities=22% Similarity=0.267 Sum_probs=125.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+|+|++|||||||++ +|.+. .+...+.++. ..+.+|||+|++ ..++..++.
T Consensus 9 ~~~ki~v~G~~~~GKSsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---- 81 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLH-QFIEK--KFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYR---- 81 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHH-HHHHS--SCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTST----
T ss_pred cceEEEEECCCCCCHHHHHH-HHHcC--CCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHh----
Confidence 45789999999999999998 78763 3332222221 167799999986 444556666
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++..+++++++||
T Consensus 82 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 154 (186)
T 2bme_A 82 ------GAAGALLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSA 154 (186)
T ss_dssp ------TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCT
T ss_pred ------cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecC
Confidence 899999999999999999999999988654 3468999999999999877788899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
++|.|++++|+++++.+.+....
T Consensus 155 ~~~~gi~~l~~~l~~~~~~~~~~ 177 (186)
T 2bme_A 155 LTGENVEEAFVQCARKILNKIES 177 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHhhh
Confidence 99999999999999988765443
No 39
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=7.1e-30 Score=205.12 Aligned_cols=153 Identities=19% Similarity=0.245 Sum_probs=127.3
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
..+||+|+|++|||||||++ +|.+.. ....++.+.+.. .+.+|||+|++ ..++..+++
T Consensus 22 ~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------ 94 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLF-RYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYR------ 94 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHH-HHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHT------
T ss_pred eeeEEEEECCCCcCHHHHHH-HHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHc------
Confidence 45789999999999999998 787731 222233333322 57899999976 445556666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..+++.++++++++||++
T Consensus 95 ----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 169 (191)
T 3dz8_A 95 ----GAMGFILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKE 169 (191)
T ss_dssp ----TCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred ----cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCC
Confidence 899999999999999999999999999664 456899999999999988888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q psy5810 195 VYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~ 214 (250)
|.||+++|+++++.+.++..
T Consensus 170 ~~gi~~l~~~l~~~i~~~~~ 189 (191)
T 3dz8_A 170 NISVRQAFERLVDAICDKMS 189 (191)
T ss_dssp TBSHHHHHHHHHHHHHHHC-
T ss_pred CCCHHHHHHHHHHHHHHhcc
Confidence 99999999999998876543
No 40
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1e-28 Score=195.56 Aligned_cols=151 Identities=23% Similarity=0.343 Sum_probs=121.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccc---cccccccCcee-----------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE---NFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~---~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
..+||+++|++|||||||++ +|.+... ...++.+.++. .+.+|||+|++ ..++..++.
T Consensus 9 ~~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~----- 82 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLV-RFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYR----- 82 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHH-HHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGG-----
T ss_pred cceEEEEECcCCCCHHHHHH-HHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHcc-----
Confidence 45789999999999999998 7776311 22233333221 67899999986 455666777
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++|++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++.++++.++++++++||+
T Consensus 83 -----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 156 (180)
T 2g6b_A 83 -----DAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAK 156 (180)
T ss_dssp -----GCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTT
T ss_pred -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCC
Confidence 8999999999999999999999999987653 3689999999999998778888999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhh
Q psy5810 194 LVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~ 212 (250)
+|.|++++|+++.+.+.+.
T Consensus 157 ~~~gi~~l~~~l~~~~~~~ 175 (180)
T 2g6b_A 157 TGLNVDLAFTAIAKELKRR 175 (180)
T ss_dssp TCTTHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999887654
No 41
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.96 E-value=4.1e-29 Score=195.40 Aligned_cols=147 Identities=18% Similarity=0.272 Sum_probs=123.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCc----e-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD----V-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~----~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+++|++|||||||++ ++.+. .+...+.++ . ..+.+|||+|++ ..++..++.
T Consensus 4 ~~~~i~v~G~~~~GKssl~~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---- 76 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQ-RYCKG--IFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYR---- 76 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHH-HHHHC--CCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHT----
T ss_pred eeEEEEEECcCCCCHHHHHH-HHHcC--CCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhc----
Confidence 45789999999999999998 78773 333332222 2 167899999986 455555666
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++++|||++++.+|+.+..|+..+.... .+.|+++|+||+|+.+.+.++.+++.++++.++++++++||
T Consensus 77 ------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 148 (168)
T 1z2a_A 77 ------GAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSV 148 (168)
T ss_dssp ------TCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBT
T ss_pred ------CCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEec
Confidence 8999999999999999999999999997654 68999999999999877788899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy5810 193 GLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~ 211 (250)
+++.|++++|+++.+.+.+
T Consensus 149 ~~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 149 KEDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTTBSSHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999987754
No 42
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.96 E-value=2.8e-29 Score=196.46 Aligned_cols=148 Identities=21% Similarity=0.314 Sum_probs=121.7
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccccccc----ccccCce-----------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
.+.+||+++|++|||||||++ ++.+. .+. ++.+.+. ..+.+|||+|++ ..++..++.
T Consensus 4 ~~~~~i~v~G~~~~GKssli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~--- 77 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVL-RFVKG--QFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYR--- 77 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHH-HHHHS--CCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHT---
T ss_pred CceEEEEEECCCCCCHHHHHH-HHHcC--CCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhcc---
Confidence 356789999999999999998 78763 322 2222222 157899999986 334444555
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++|++++|||++++.+|+.+..|+..+.+. ...++|+++|+||+|+.+.+.++.+++.++++..+++++++|
T Consensus 78 -------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 149 (170)
T 1r2q_A 78 -------GAQAAIVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETS 149 (170)
T ss_dssp -------TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECC
T ss_pred -------CCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEe
Confidence 899999999999999999999999998765 346899999999999987778888999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHH
Q psy5810 192 VGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~ 210 (250)
|++|.|++++|++|++.+.
T Consensus 150 a~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 150 AKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTTCTTHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 9999999999999987653
No 43
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.96 E-value=2.1e-29 Score=196.41 Aligned_cols=147 Identities=30% Similarity=0.475 Sum_probs=123.5
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
.+||+++|++|||||||++ ++.+ ..+...+.++.. .+.+|||+|++ ..++..++.
T Consensus 3 ~~~i~v~G~~~~GKSsli~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~------ 73 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTV-QFVT--GTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIK------ 73 (167)
T ss_dssp EEEEEEECCTTSSHHHHHH-HHHH--SCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHH------
T ss_pred EEEEEEECCCCCCHHHHHH-HHHc--CCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhc------
Confidence 4789999999999999998 7876 333333333321 47899999976 344445555
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++++|||++++.+|+.+..|+..+.+.....+.|+++|+||+|+.+.+.++.+++..+++.++++++++||++
T Consensus 74 ----~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 149 (167)
T 1kao_A 74 ----NGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKS 149 (167)
T ss_dssp ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTC
T ss_pred ----cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCC
Confidence 7999999999999999999999999998776567899999999999987788889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy5810 195 VYKTDELLVGIARQAG 210 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~ 210 (250)
|.|++++|+++++.+.
T Consensus 150 ~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 150 KTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998764
No 44
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.96 E-value=5.8e-29 Score=201.54 Aligned_cols=150 Identities=23% Similarity=0.263 Sum_probs=123.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccc----cccCce-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+|+|++|||||||++ +|.+. .+.. +.+.+. ..+.+|||+|++ ..++..++.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~---- 96 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLH-QFIEN--KFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYR---- 96 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHH-HHHC--------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHT----
T ss_pred cceEEEEECcCCCCHHHHHH-HHHhC--CCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhc----
Confidence 45789999999999999998 78773 3322 222221 267899999986 455566666
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++..+++++++||
T Consensus 97 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA 169 (200)
T 2o52_A 97 ------GAAGALLVYDITSRETYNSLAAWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSA 169 (200)
T ss_dssp ------TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-TCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECT
T ss_pred ------cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 899999999999999999999999998664 3368999999999999877788889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~ 213 (250)
++|.||+++|.+|++.+.+..
T Consensus 170 ~~g~gi~~l~~~l~~~i~~~~ 190 (200)
T 2o52_A 170 LTGENVEEAFLKCARTILNKI 190 (200)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999887644
No 45
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.96 E-value=8.3e-29 Score=194.00 Aligned_cols=147 Identities=24% Similarity=0.318 Sum_probs=122.6
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccc----cccCce-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
+.+||+++|++|||||||++ ++.+. .+.. +.+.+. ..+.+|||+|++ ..++..++.
T Consensus 5 ~~~~i~v~G~~~~GKSsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~---- 77 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMW-RFVED--SFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYR---- 77 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHH-HHHHS--CCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHT----
T ss_pred cceEEEEECcCCCCHHHHHH-HHHcC--CCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCc----
Confidence 45789999999999999998 78773 3332 222222 157799999986 445555566
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++++|||++++.+|+.+..|+..+... ..+.+|+++|+||+|+.+.+.+..+++..+++..+++++++||
T Consensus 78 ------~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~-~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (170)
T 1z0j_A 78 ------GSAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSA 150 (170)
T ss_dssp ------TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBT
T ss_pred ------CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 899999999999999999999999998664 4578999999999999877788899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy5810 193 GLVYKTDELLVGIARQAG 210 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~ 210 (250)
++|.|++++|+++.+.+.
T Consensus 151 ~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 151 KNAININELFIEISRRIP 168 (170)
T ss_dssp TTTBSHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999987653
No 46
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.96 E-value=5.3e-29 Score=198.87 Aligned_cols=148 Identities=18% Similarity=0.277 Sum_probs=121.5
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
...+||+++|++|||||||++ +|.+ ..+...+.++.+ .+.+|||+|++ ..++..++.
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---- 77 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLH-VFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP---- 77 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHH-HHHH--SCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCT----
T ss_pred ceEEEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcC----
Confidence 456789999999999999998 7877 344333333322 57899999986 455566666
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHH
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKL 179 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~ 179 (250)
++|++++|||++++++|+.+ ..|+..+.+. .+++|+++||||+|+.+ .+.++.+++.++
T Consensus 78 ------~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 149 (184)
T 1m7b_A 78 ------DSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 149 (184)
T ss_dssp ------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred ------CCcEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHH
Confidence 89999999999999999999 7899888654 35899999999999964 267889999999
Q ss_pred HHHhC-CeEEEEecC-CCCCHHHHHHHHHHHHHh
Q psy5810 180 AYAWG-VKFVETSVG-LVYKTDELLVGIARQAGL 211 (250)
Q Consensus 180 ~~~~~-~~~~evSa~-~~~~I~~lf~~l~~~i~~ 211 (250)
++.++ ++|+++||+ ++.||+++|+++++.+.+
T Consensus 150 ~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 150 AKQIGAATYIECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp HHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence 99988 689999999 689999999999988764
No 47
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.96 E-value=8.1e-29 Score=200.51 Aligned_cols=153 Identities=18% Similarity=0.254 Sum_probs=126.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
..+||+|+|++|||||||++ +|.+.. ....++.+.+. ..+.+|||+|++ ..++..++.
T Consensus 7 ~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------ 79 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLF-RYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYR------ 79 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHH-HHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGG------
T ss_pred eeeEEEEECCCCCCHHHHHH-HHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhc------
Confidence 35789999999999999998 788732 12223333222 167899999986 345556666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++|+|||++++.+|+.+..|+..+... ...+.|+++|+||+|+.+.+.++.+++.++++.++++++++||++
T Consensus 80 ----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (203)
T 1zbd_A 80 ----GAMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKD 154 (203)
T ss_dssp ----GCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTT
T ss_pred ----CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCC
Confidence 899999999999999999999999998664 346789999999999987788899999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhhh
Q psy5810 195 VYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~ 214 (250)
|.|++++|++|.+.+.++..
T Consensus 155 ~~gi~~l~~~l~~~i~~~~~ 174 (203)
T 1zbd_A 155 NINVKQTFERLVDVICEKMS 174 (203)
T ss_dssp TBSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999998876543
No 48
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.2e-29 Score=200.89 Aligned_cols=151 Identities=25% Similarity=0.296 Sum_probs=124.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+.+||+|+|++|||||||++ +|.+.. ....++.+.+. ..+.+|||+|++ ..++..++.
T Consensus 22 ~~~ki~vvG~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------ 94 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVC-RFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYR------ 94 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHH-HHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHT------
T ss_pred CceEEEEECcCCCCHHHHHH-HHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhc------
Confidence 46889999999999999998 787631 12223333222 167899999986 455556666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++|+|||++++.+|+.+..|+..+.+. ...++|+++|+||+|+.+.+.++.+++.++++.++++++++||++
T Consensus 95 ----~~d~iilV~d~~~~~s~~~~~~~~~~i~~~-~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~ 169 (192)
T 2fg5_A 95 ----GSAAAVIVYDITKQDSFYTLKKWVKELKEH-GPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKN 169 (192)
T ss_dssp ----TCSEEEEEEETTCTHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTT
T ss_pred ----cCCEEEEEEeCCCHHHHHHHHHHHHHHHHh-CCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 899999999999999999999999998665 346899999999999987778889999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy5810 195 VYKTDELLVGIARQAGLN 212 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~ 212 (250)
|.||+++|++|.+.+.+.
T Consensus 170 ~~gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 170 AINIEELFQGISRQIPPL 187 (192)
T ss_dssp TBSHHHHHHHHHHTCC--
T ss_pred CcCHHHHHHHHHHHHHhh
Confidence 999999999999877543
No 49
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.96 E-value=1.1e-28 Score=193.36 Aligned_cols=149 Identities=23% Similarity=0.363 Sum_probs=120.0
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
.+||+++|++|||||||++ ++.+.. ....++.+.+. ..+.+|||+|++ ..++..++.
T Consensus 3 ~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~------- 74 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLV-RFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYR------- 74 (170)
T ss_dssp EEEEEEEESTTSSHHHHHH-HHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHT-------
T ss_pred ceEEEEECcCCCCHHHHHH-HHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhc-------
Confidence 4789999999999999998 787631 12223333222 157899999986 444555566
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
++|++++|||++++.+|+.+..|+..+.+. ...+.|+++|+||+|+ ..+.+..+++.++++.++++++++||++|
T Consensus 75 ---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 149 (170)
T 1g16_A 75 ---GAMGIILVYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKND 149 (170)
T ss_dssp ---TEEEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTT
T ss_pred ---cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCC
Confidence 899999999999999999999999998765 3468899999999999 44678888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhh
Q psy5810 196 YKTDELLVGIARQAGLN 212 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~ 212 (250)
.|++++|.++.+.+.++
T Consensus 150 ~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 150 DNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp BSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999988654
No 50
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.96 E-value=4.2e-29 Score=200.14 Aligned_cols=151 Identities=23% Similarity=0.269 Sum_probs=122.0
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCcc---ccCCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQR---CLTPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~~---~~~~~~~~~~~~ 112 (250)
.+.+||+|+|++|||||||++ +|.+.. ....++.+.+. ..+.+|||+|+++ .++..+++
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~---- 92 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTY-RFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYR---- 92 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHH-HHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHT----
T ss_pred CceEEEEEECCCCCCHHHHHH-HHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhc----
Confidence 356889999999999999998 787631 11222333222 1678999999873 44555666
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++|+|||++++.+|+.+..|+.++.+.....++|+++|+||+|+.+.+.++.+++..+++.++++++++||
T Consensus 93 ------~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 166 (189)
T 1z06_A 93 ------NVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSA 166 (189)
T ss_dssp ------TCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCS
T ss_pred ------CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeC
Confidence 89999999999999999999999999987755678999999999999877788999999999999999999999
Q ss_pred CCC---CCHHHHHHHHHHHHH
Q psy5810 193 GLV---YKTDELLVGIARQAG 210 (250)
Q Consensus 193 ~~~---~~I~~lf~~l~~~i~ 210 (250)
+++ .||.++|.+|++.+.
T Consensus 167 ~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 167 KNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp SSGGGGSCHHHHHHHHC----
T ss_pred CcCCcccCHHHHHHHHHHHHh
Confidence 999 999999999988764
No 51
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.96 E-value=9.4e-29 Score=197.67 Aligned_cols=154 Identities=19% Similarity=0.276 Sum_probs=126.4
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCc---------------------eeEEEEEeCCCCc--cccC
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPD---------------------VFFIVYSDTNHTQ--RCLT 103 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~---------------------~~~i~i~Dt~g~~--~~~~ 103 (250)
...+||+|+|++|||||||++ +|.+.. ....++.+.+ ...+.+|||+|++ ..++
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 87 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLY-QYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLT 87 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHH-HHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHH-HHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHH
Confidence 346789999999999999998 787631 1122222221 1267899999986 3444
Q ss_pred CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh
Q psy5810 104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183 (250)
Q Consensus 104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~ 183 (250)
..++. ++|++|+|||++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+++.++++.+
T Consensus 88 ~~~~~----------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~ 157 (195)
T 3bc1_A 88 TAFFR----------DAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKY 157 (195)
T ss_dssp HHTTT----------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHH
T ss_pred HHHHc----------CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHc
Confidence 55555 89999999999999999999999999977655468999999999999877788899999999999
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 184 GVKFVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 184 ~~~~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
+++++++||++|.|++++|++|.+.+.+..
T Consensus 158 ~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 187 (195)
T 3bc1_A 158 GIPYFETSAANGTNISHAIEMLLDLIMKRM 187 (195)
T ss_dssp TCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999887643
No 52
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.96 E-value=1.2e-28 Score=198.02 Aligned_cols=150 Identities=20% Similarity=0.236 Sum_probs=123.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCc----e-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD----V-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~----~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
..+||+|+|++|||||||++ +|.+. .+...+.++ . ..+.+|||+|++ ..++..++.
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---- 96 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLS-RFTRN--EFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR---- 96 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHH-HHHHS--CCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT----
T ss_pred cceEEEEECcCCCCHHHHHH-HHhcC--CCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc----
Confidence 45789999999999999998 78773 333222222 1 156799999986 334444555
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.+..+++..+++..+++++++||
T Consensus 97 ------~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 169 (193)
T 2oil_A 97 ------GAVGALLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSA 169 (193)
T ss_dssp ------TCCEEEEEEETTCHHHHHTHHHHHHHHHTT-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECT
T ss_pred ------cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 899999999999999999999999998654 3467899999999999877788889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~ 213 (250)
++|.|++++|++|++.+.++.
T Consensus 170 ~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 170 LDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999887543
No 53
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=1.1e-28 Score=197.85 Aligned_cols=153 Identities=21% Similarity=0.257 Sum_probs=125.5
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQ 110 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~ 110 (250)
....+||+|+|++|||||||++ +|.+. .+...+.++. ..+.+|||+|++ ..++..+++
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-- 86 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLL-RFTDD--TFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYR-- 86 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHH-HHHHS--CCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHT--
T ss_pred CCCceEEEEECCCCCCHHHHHH-HHHcC--CCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhc--
Confidence 3456889999999999999998 78773 3332222221 157899999986 344455555
Q ss_pred cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET 190 (250)
Q Consensus 111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev 190 (250)
++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+. .+.+..+++.++++.++++++++
T Consensus 87 --------~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 157 (195)
T 1x3s_A 87 --------GAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEA 157 (195)
T ss_dssp --------TCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEEC
T ss_pred --------cCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEe
Confidence 899999999999999999999999999765445689999999999994 46788889999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 191 SVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
||+++.||+++|++|.+.+.+...
T Consensus 158 Sa~~~~gi~~l~~~l~~~~~~~~~ 181 (195)
T 1x3s_A 158 SAKTCDGVQCAFEELVEKIIQTPG 181 (195)
T ss_dssp CTTTCTTHHHHHHHHHHHHHTSGG
T ss_pred cCCCCCCHHHHHHHHHHHHHhhhh
Confidence 999999999999999998876543
No 54
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.96 E-value=2.5e-28 Score=197.36 Aligned_cols=151 Identities=18% Similarity=0.280 Sum_probs=119.8
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
....+||+++|++|||||||++ +|.+. .+...+.+++. .+.+|||+|++ ..++..++.
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--- 90 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVV-SYTTN--GYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYT--- 90 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHH-HHHC----------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGT---
T ss_pred CCcceEEEEECCCCCCHHHHHH-HHHhC--CCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcC---
Confidence 3456789999999999999998 78873 34443333321 46699999986 455566666
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHH
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKK 178 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~ 178 (250)
++|++|+|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+ .+.++.+++..
T Consensus 91 -------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 161 (201)
T 2q3h_A 91 -------NTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKL 161 (201)
T ss_dssp -------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHH
T ss_pred -------CCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHH
Confidence 899999999999999999997 7999886642 5899999999999864 36788899999
Q ss_pred HHHHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 179 LAYAWGV-KFVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 179 ~~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
+++.++. +|+++||++|.||+++|+++++.+.+..
T Consensus 162 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 162 LAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp HHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence 9999997 8999999999999999999999887543
No 55
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=6.7e-29 Score=194.32 Aligned_cols=148 Identities=24% Similarity=0.323 Sum_probs=119.9
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
.+||+++|++|||||||++ ++.+.. ....++.+.+. ..+.+|||+|++ ..++..++.
T Consensus 3 ~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~------- 74 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVL-RFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYR------- 74 (170)
T ss_dssp EEEEEEECSTTSSHHHHHH-HHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHT-------
T ss_pred eEEEEEECCCCCCHHHHHH-HHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhc-------
Confidence 5789999999999999998 787631 11222222221 167899999986 344445555
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC---CccCHHHHHHHHHHhCCeEEEEec
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR---RQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~---~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++++|||++++.+|+.+..|+..+... ...+.|+++|+||+|+... +.+..+++.++++.++++++++||
T Consensus 75 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa 150 (170)
T 1ek0_A 75 ---NAQAALVVYDVTKPQSFIKARHWVKELHEQ-ASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSA 150 (170)
T ss_dssp ---TCSEEEEEEETTCHHHHHHHHHHHHHHHHH-SCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCT
T ss_pred ---cCcEEEEEEecCChHHHHHHHHHHHHHHHh-cCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeC
Confidence 899999999999999999999999998765 3468999999999998654 678889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy5810 193 GLVYKTDELLVGIARQAG 210 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~ 210 (250)
++|.|++++|+++.+.+.
T Consensus 151 ~~~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 151 KTGENVNDVFLGIGEKIP 168 (170)
T ss_dssp TTCTTHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHh
Confidence 999999999999987653
No 56
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.96 E-value=3.5e-28 Score=192.45 Aligned_cols=153 Identities=19% Similarity=0.215 Sum_probs=116.3
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCc------------eeEEEEEeCCCCc--cccCCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPD------------VFFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~------------~~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
...+||+++|++|||||||++ ++.+.. ....++.+.+ ...+.+|||+|++ ..++..++.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---- 80 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMH-RYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYR---- 80 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHH-HHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCST----
T ss_pred CceEEEEEECCCCCCHHHHHH-HHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhh----
Confidence 356789999999999999998 787631 1122222211 1267899999986 556667777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC---CCCCcEEEEeeCCCcc-CCCccCHHHHHHHHH-HhCCeE
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY---IGEKAVILVANKADLE-RRRQVTHSDGKKLAY-AWGVKF 187 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~---~~~~piilv~nK~Dl~-~~~~v~~~~~~~~~~-~~~~~~ 187 (250)
++|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+. ..+.++.+++.++++ ..++++
T Consensus 81 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~ 154 (182)
T 1ky3_A 81 ------GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPL 154 (182)
T ss_dssp ------TCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCE
T ss_pred ------cCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeE
Confidence 89999999999999999999999999876543 2678999999999994 456688889999998 457889
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 188 VETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
+++||++|.||+++|+++.+.+.+.
T Consensus 155 ~~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 155 FLTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp EEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
No 57
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.96 E-value=2.3e-28 Score=193.03 Aligned_cols=152 Identities=15% Similarity=0.178 Sum_probs=121.3
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
....+||+++|++|||||||++ ++.+.. ....++.+.+. ..+.+|||+|++ ..++..++.
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~---- 78 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMN-RYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR---- 78 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHH-HHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGT----
T ss_pred ccceeEEEEECCCCCCHHHHHH-HHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHh----
Confidence 4456789999999999999998 787631 11222322221 167899999986 445556666
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC---CCCcEEEEeeCCCccCCCccCHHHHHHHHH-HhCCeEE
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI---GEKAVILVANKADLERRRQVTHSDGKKLAY-AWGVKFV 188 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~~ 188 (250)
++|++++|||++++.+|+.+..|+..+...... .++|+++|+||+|+. .+.++.+++.++++ ..+++++
T Consensus 79 ------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~ 151 (177)
T 1wms_A 79 ------GSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYF 151 (177)
T ss_dssp ------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEE
T ss_pred ------cCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEE
Confidence 899999999999999999999999998765432 678999999999997 46788899999998 5678899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHh
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
++||++|.|++++|+++++.+.+
T Consensus 152 ~~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 152 ETSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998865
No 58
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.96 E-value=2.9e-28 Score=197.51 Aligned_cols=152 Identities=20% Similarity=0.280 Sum_probs=123.4
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
...+||+|+|++|||||||++ +|.+. .+...+.+++ ..+.+|||+|++ ..++..++.
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~--- 79 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMN-QYVNK--KFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYR--- 79 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHH-HHHHS--CCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGT---
T ss_pred CcceEEEEECcCCCCHHHHHH-HHHcC--CCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHh---
Confidence 356789999999999999998 78773 3332222222 167899999986 455666676
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC---CCCcEEEEeeCCCccCCCccCHHHHHHHHH-HhCCeE
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI---GEKAVILVANKADLERRRQVTHSDGKKLAY-AWGVKF 187 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~---~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-~~~~~~ 187 (250)
++|++|+|||++++.+|+.+..|+..+...... .++|+++|+||+|+. .+.+..+++..++. ..++++
T Consensus 80 -------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~ 151 (207)
T 1vg8_A 80 -------GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPY 151 (207)
T ss_dssp -------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCE
T ss_pred -------CCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceE
Confidence 899999999999999999999999988765432 478999999999997 46678888888887 667899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 188 VETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
+++||++|.|++++|++|++.+.+...
T Consensus 152 ~~~Sa~~g~gi~~l~~~l~~~~~~~~~ 178 (207)
T 1vg8_A 152 FETSAKEAINVEQAFQTIARNALKQET 178 (207)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999876544
No 59
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.96 E-value=5.8e-28 Score=193.34 Aligned_cols=151 Identities=20% Similarity=0.307 Sum_probs=120.1
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
...+||+++|++|||||||++ ++.+. .+...+.++.. .+.+|||+|++ ..++..++.
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---- 91 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTI-QLIQN--HFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR---- 91 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHH-HHHHS--SCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CT----
T ss_pred cceeEEEEECcCCCCHHHHHH-HHHcC--CCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhC----
Confidence 356789999999999999998 78763 33333322221 47899999986 556666777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
.+|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.. +.+..+++.++++.++++++++||
T Consensus 92 ------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa 164 (190)
T 3con_A 92 ------TGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSA 164 (190)
T ss_dssp ------TCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCT
T ss_pred ------cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeC
Confidence 8999999999999999999999999987766556899999999999866 667889999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~ 213 (250)
++|.|++++|++|++.+.+.+
T Consensus 165 ~~~~gi~~l~~~l~~~~~~~~ 185 (190)
T 3con_A 165 KTRQGVEDAFYTLVREIRQYR 185 (190)
T ss_dssp TTCTTHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999887543
No 60
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.96 E-value=1.5e-28 Score=200.30 Aligned_cols=148 Identities=18% Similarity=0.277 Sum_probs=121.5
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
...+||+|+|++|||||||++ +|.+ ..+...+.++++ .+.+|||+|++ ..++..+++
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~---- 98 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLH-VFAK--DCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYP---- 98 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHH-HHHH--SCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCT----
T ss_pred ceeeEEEEECCCCCCHHHHHH-HHhc--CCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhcc----
Confidence 356889999999999999998 7877 344333333322 57899999986 455566666
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccC------------CCccCHHHHHHH
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLER------------RRQVTHSDGKKL 179 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~------------~~~v~~~~~~~~ 179 (250)
++|++|+|||++++.+|+.+ ..|+..+.+. ..++|+++||||+|+.+ .+.++.+++.++
T Consensus 99 ------~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 170 (205)
T 1gwn_A 99 ------DSDAVLICFDISRPETLDSVLKKWKGEIQEF--CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANM 170 (205)
T ss_dssp ------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred ------CCCEEEEEEECCCHHHHHHHHHHHHHHHHHH--CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHH
Confidence 89999999999999999999 7899988664 35799999999999964 267889999999
Q ss_pred HHHhC-CeEEEEecC-CCCCHHHHHHHHHHHHHh
Q psy5810 180 AYAWG-VKFVETSVG-LVYKTDELLVGIARQAGL 211 (250)
Q Consensus 180 ~~~~~-~~~~evSa~-~~~~I~~lf~~l~~~i~~ 211 (250)
++.++ ++|+++||+ ++.||+++|+++++.+.+
T Consensus 171 ~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 171 AKQIGAATYIECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp HHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence 99988 689999999 689999999999988764
No 61
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.96 E-value=1.7e-28 Score=198.68 Aligned_cols=155 Identities=19% Similarity=0.184 Sum_probs=99.2
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCce-----------------eEEEEEeCCCCc--cccCCCcccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-----------------FFIVYSDTNHTQ--RCLTPMPFCS 109 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-----------------~~i~i~Dt~g~~--~~~~~~~~~~ 109 (250)
...+||+|+|++|||||||++ +|.+....+...+.+++ ..+.+|||+|++ ..++..++.
T Consensus 18 ~~~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~- 95 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALIS-MFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWN- 95 (208)
T ss_dssp EEEEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCC-
T ss_pred ccceEEEEECCCCCCHHHHHH-HHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHh-
Confidence 456889999999999999998 78774113333222222 257899999986 556677777
Q ss_pred ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC--CCCCcEEEEeeCCCccC-CCccCHHHHHHHHHHhCCe
Q psy5810 110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY--IGEKAVILVANKADLER-RRQVTHSDGKKLAYAWGVK 186 (250)
Q Consensus 110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~--~~~~piilv~nK~Dl~~-~~~v~~~~~~~~~~~~~~~ 186 (250)
++|++|+|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+ .+.++.+++.++++.++++
T Consensus 96 ---------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~ 166 (208)
T 2yc2_C 96 ---------GVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLD 166 (208)
T ss_dssp ---------CCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCE
T ss_pred ---------hCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCE
Confidence 89999999999999999999999999976543 25899999999999987 7889999999999999999
Q ss_pred EEEEecCC-CCCHHHHHHHHHHHHHhhhh
Q psy5810 187 FVETSVGL-VYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 187 ~~evSa~~-~~~I~~lf~~l~~~i~~~~~ 214 (250)
++++||++ |.|++++|+++++.+.+...
T Consensus 167 ~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~ 195 (208)
T 2yc2_C 167 FFDVSANPPGKDADAPFLSIATTFYRNYE 195 (208)
T ss_dssp EEECCC-------CHHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCcCHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999998876543
No 62
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.96 E-value=1.9e-28 Score=194.87 Aligned_cols=149 Identities=21% Similarity=0.316 Sum_probs=121.4
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
+.+||+++|++|||||||++ +|.+ ..+...+.++.. .+.+|||+|++ ..++..++.
T Consensus 4 ~~~~i~~~G~~~~GKssl~~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----- 75 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLI-SYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP----- 75 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHH-HHHH--SSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCT-----
T ss_pred cEEEEEEECCCCCCHHHHHH-HHHc--CCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhcc-----
Confidence 45789999999999999998 7876 333333222221 56699999986 445555666
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHH
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLA 180 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~ 180 (250)
++|++++|||++++.+|+.+. .|+..+.... .+.|+++|+||+|+.+. +.++.+++..++
T Consensus 76 -----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 148 (186)
T 1mh1_A 76 -----QTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 148 (186)
T ss_dssp -----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred -----CCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHH
Confidence 899999999999999999997 7998886642 48999999999998643 578889999999
Q ss_pred HHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 181 YAWGV-KFVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 181 ~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
+.++. +++++||++|.|++++|+++.+.+....
T Consensus 149 ~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 149 KEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHHSCCC
T ss_pred HhcCCcEEEEecCCCccCHHHHHHHHHHHHhccc
Confidence 99997 8999999999999999999999887543
No 63
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.96 E-value=1.3e-28 Score=194.43 Aligned_cols=150 Identities=23% Similarity=0.372 Sum_probs=122.8
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQ 110 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~ 110 (250)
....+||+|+|++|||||||++ ++.+ ..+...+.+++ ..+.+|||+|++ ..++..++.
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~-- 85 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLIT-RFMY--DSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIR-- 85 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHH-HHHH--SCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHH--
T ss_pred CCcceEEEEECCCCCCHHHHHH-HHHc--CCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhc--
Confidence 3456889999999999999998 7876 33333222222 157899999986 445555555
Q ss_pred cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEE
Q psy5810 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVET 190 (250)
Q Consensus 111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ev 190 (250)
++|++++|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.++.+++..+++..+++++++
T Consensus 86 --------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T 2y8e_A 86 --------DSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIET 156 (179)
T ss_dssp --------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEE
T ss_pred --------CCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEE
Confidence 8999999999999999999999999987653 3679999999999998778888999999999999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy5810 191 SVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~ 211 (250)
||++|.|++++|+++.+.+.+
T Consensus 157 Sa~~~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 157 SAKAGYNVKQLFRRVAAALPG 177 (179)
T ss_dssp BTTTTBSHHHHHHHHHHTCC-
T ss_pred eCCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999876543
No 64
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.96 E-value=2.4e-28 Score=200.01 Aligned_cols=150 Identities=21% Similarity=0.303 Sum_probs=111.8
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~ 112 (250)
.+.+||+++|++|||||||++ +|.+ ..+...+.++.. .+.+|||+|++ ..++..++.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~---- 104 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLM-VFAD--GAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYP---- 104 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHH-HHHC---------CCCCCEEEEEEEEETTEEEEEEEEEC-------------------
T ss_pred cceEEEEEECcCCCCHHHHHH-HHHc--CCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhc----
Confidence 356889999999999999998 8887 333333333321 57899999986 566677777
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHH
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKL 179 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~ 179 (250)
++|++++|||++++.+|+.+. .|+..+... ..++|+++|+||+|+... +.++.+++.++
T Consensus 105 ------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~ 176 (214)
T 2j1l_A 105 ------DASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM 176 (214)
T ss_dssp ------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHH--CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred ------cCCEEEEEEECcCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence 899999999999999999997 799988654 367999999999999654 36788899999
Q ss_pred HHHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 180 AYAWGV-KFVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 180 ~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
++.+++ +|+++||++|.||+++|+++++.+.+.+
T Consensus 177 ~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 177 ARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred HHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence 999998 8999999999999999999999887543
No 65
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.96 E-value=9.7e-29 Score=198.88 Aligned_cols=149 Identities=21% Similarity=0.324 Sum_probs=121.0
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccccccc----ccccCce-----------eEEEEEeCCCCc--cccCCCcccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
...+||+|+|++|||||||++ +|.+. .+. ++.+.+. ..+.+|||+|++ ..++..++.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~--- 97 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLME-RFTDD--TFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYR--- 97 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHH-HHCC----------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHH---
T ss_pred CCceEEEEECCCCCCHHHHHH-HHhcC--CCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhc---
Confidence 456889999999999999998 88873 332 2222111 157899999986 344455555
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-CCeEEEE
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-GVKFVET 190 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~~~~~ev 190 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++.++++.. +++++++
T Consensus 98 -------~~d~iilV~D~~~~~s~~~~~~~~~~i~~~-~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~ 169 (192)
T 2il1_A 98 -------SAKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEA 169 (192)
T ss_dssp -------HCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEEC
T ss_pred -------CCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEE
Confidence 799999999999999999999999888654 4468999999999999877888899999999885 7899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy5810 191 SVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~ 211 (250)
||++|.||+++|++|++.+.+
T Consensus 170 SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 170 SAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp BTTTTBSHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 66
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.96 E-value=4.7e-29 Score=200.81 Aligned_cols=151 Identities=21% Similarity=0.370 Sum_probs=121.6
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
..+||+++|++|||||||++ +|.+ ..+...+.++++ .+.+|||+|++ ..++..++.
T Consensus 7 ~~~ki~vvG~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----- 78 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVL-RFVK--GTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSIS----- 78 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHH-HHHH--SCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHH-----
T ss_pred CeeEEEEECCCCCcHHHHHH-HHHc--CCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhc-----
Confidence 45779999999999999998 7877 333333322221 57799999986 344445555
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
++|++++|||++++.+|+.+..|+..+..... ..++|+++|+||+|+.+ +.+..+++..++..++++++++||
T Consensus 79 -----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa 152 (199)
T 2gf0_A 79 -----KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSA 152 (199)
T ss_dssp -----HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBT
T ss_pred -----cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEec
Confidence 79999999999999999999988887766533 24789999999999965 667888999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhhh
Q psy5810 193 GLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
++|.|++++|+++++.+.....
T Consensus 153 ~~~~gi~~l~~~l~~~~~~~~~ 174 (199)
T 2gf0_A 153 KMNYNVKELFQELLTLETRRNM 174 (199)
T ss_dssp TTTBSHHHHHHHHHHHCSSSCE
T ss_pred CCCCCHHHHHHHHHHHHhhhhc
Confidence 9999999999999987765433
No 67
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.96 E-value=9.6e-29 Score=196.10 Aligned_cols=145 Identities=22% Similarity=0.375 Sum_probs=115.1
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
.+||+++|++|||||||++ ++.+ ..+...+.++++ .+.+|||+|++ ..++..++.
T Consensus 8 ~~ki~v~G~~~~GKssl~~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~------ 78 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLI-SYTS--NTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYR------ 78 (182)
T ss_dssp CCEEEEECSTTSSHHHHHH-HHHH--SCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGT------
T ss_pred eEEEEEECCCCCCHHHHHH-HHhc--CCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcc------
Confidence 4679999999999999998 7876 333333333322 45699999986 455566666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCc----------cCHHHHHHHHHHh
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQ----------VTHSDGKKLAYAW 183 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~ 183 (250)
++|++++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+.+. ++.+++.++++.+
T Consensus 79 ----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 152 (182)
T 3bwd_D 79 ----GADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI 152 (182)
T ss_dssp ----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH
T ss_pred ----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc
Confidence 899999999999999999997 6999886652 4899999999999865443 5788899999999
Q ss_pred CC-eEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 184 GV-KFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 184 ~~-~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+. +|+++||++|.||+++|+++++.+.
T Consensus 153 ~~~~~~~~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 153 GAPAYIECSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp TCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 97 8999999999999999999998775
No 68
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.96 E-value=1.1e-28 Score=198.70 Aligned_cols=155 Identities=10% Similarity=0.022 Sum_probs=114.9
Q ss_pred cccccEEEEEEEcCCCCchhhhchhhhccccccccc-cccCcee-----------EEEEEeCCCCc--cccCCCcccccc
Q psy5810 46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
.......||+|+|++|||||||++ +|.+. .+.. .+.++++ .+.+|||+|++ ..++..+++
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~-~l~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--- 85 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIIN-QVKPA--QSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWETYYD--- 85 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHH-HHSCC--C----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCT---
T ss_pred cCCCCCcEEEEECCCCCCHHHHHH-HHhcC--CCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHh---
Confidence 345677889999999999999998 88883 3333 3333332 67899999986 556666776
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC-------CCCcEEEEeeCCCccCCCc---cCHHHHHHH-H
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI-------GEKAVILVANKADLERRRQ---VTHSDGKKL-A 180 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~-------~~~piilv~nK~Dl~~~~~---v~~~~~~~~-~ 180 (250)
++|++|+|||++++++|+.+..|+..+.+.... .++|++||+||+|+.+... +........ +
T Consensus 86 -------~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~ 158 (199)
T 4bas_A 86 -------NIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLM 158 (199)
T ss_dssp -------TCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHH
T ss_pred -------cCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhc
Confidence 899999999999999999999999988654221 3789999999999976432 111111111 2
Q ss_pred HHhCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 181 ~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
+..+++++++||++|.||+++|++|++.+.+..
T Consensus 159 ~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 159 GDHPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp TTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred cCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 446788999999999999999999999887654
No 69
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=198.70 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=116.4
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
.+.+||+|+|++|||||||++ +|.+.. ....++.+.++ ..+.+|||+|++ ..++..++.
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~----- 99 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLM-RLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFR----- 99 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHH-HHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHH-----
T ss_pred CCCeEEEEECcCCCCHHHHHH-HHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHh-----
Confidence 345789999999999999998 787631 12223333222 157899999986 334444555
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc------CCCccCHHHHHHHHHHhCCeE
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE------RRRQVTHSDGKKLAYAWGVKF 187 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~------~~~~v~~~~~~~~~~~~~~~~ 187 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+. ..+.+..+++..+++.+++++
T Consensus 100 -----~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 173 (199)
T 2p5s_A 100 -----KADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALF 173 (199)
T ss_dssp -----HCSEEEEEEETTCHHHHHTHHHHHHHHHHH-C---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEE
T ss_pred -----hCCEEEEEEECCChHHHHHHHHHHHHHHHh-cCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeE
Confidence 799999999999999999999999988654 33578999999999995 457788999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 188 VETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
+++||++|.||+++|.+|++.+.+
T Consensus 174 ~~~SA~~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 174 CETSAKDGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHTC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988753
No 70
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.95 E-value=1.2e-27 Score=193.93 Aligned_cols=147 Identities=20% Similarity=0.307 Sum_probs=120.4
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
..+||+++|++|||||||++ ++.+. .+...+.++. ..+.+|||+|++ ..++..++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~----- 95 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLI-VFSKD--QFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYP----- 95 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHH-HHHHS--SCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCT-----
T ss_pred cceEEEEECCCCCCHHHHHH-HHHhC--cCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcC-----
Confidence 56789999999999999998 78773 3332222221 167899999986 455566666
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHH
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLA 180 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~ 180 (250)
++|++++|||++++++|+.+ ..|+..+... ..++|+++|+||+|+.+. +.++.+++.+++
T Consensus 96 -----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (201)
T 2gco_A 96 -----DTDVILMCFSIDSPDSLENIPEKWTPEVKHF--CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA 168 (201)
T ss_dssp -----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHH
Confidence 89999999999999999999 6788888654 258999999999999654 568888999999
Q ss_pred HHhCC-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 181 YAWGV-KFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 181 ~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
+..+. +++++||++|.||+++|+++++.+.+
T Consensus 169 ~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 169 NRISAFGYLECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence 99998 89999999999999999999987753
No 71
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.95 E-value=2e-28 Score=200.39 Aligned_cols=152 Identities=17% Similarity=0.300 Sum_probs=125.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCc-------------------------eeEEEEEeCCCCc--ccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD-------------------------VFFIVYSDTNHTQ--RCL 102 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~-------------------------~~~i~i~Dt~g~~--~~~ 102 (250)
..+||+|+|++|||||||++ +|.+. .+...+.++ ...+.+|||+|++ ..+
T Consensus 24 ~~~ki~vvG~~~~GKSsLi~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 100 (217)
T 2f7s_A 24 YLIKLLALGDSGVGKTTFLY-RYTDN--KFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSL 100 (217)
T ss_dssp EEEEEEEESCTTSSHHHHHH-HHHCS--CCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHH-HHhcC--CCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhH
Confidence 45789999999999999998 78773 332222221 1247899999986 444
Q ss_pred CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH
Q psy5810 103 TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182 (250)
Q Consensus 103 ~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~ 182 (250)
+..++. ++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.++.+++.++++.
T Consensus 101 ~~~~~~----------~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~ 170 (217)
T 2f7s_A 101 TTAFFR----------DAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK 170 (217)
T ss_dssp HHHHHT----------TCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred HHHHhc----------CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence 555666 8999999999999999999999999886543336899999999999987778889999999999
Q ss_pred hCCeEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 183 ~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
++++++++||+++.||+++|++|++.+.+...
T Consensus 171 ~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 171 YGIPYFETSAATGQNVEKAVETLLDLIMKRME 202 (217)
T ss_dssp TTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998876543
No 72
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.95 E-value=9.4e-28 Score=186.65 Aligned_cols=147 Identities=19% Similarity=0.306 Sum_probs=121.2
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
.+||+++|++|||||||++ ++.+. .+...+.++.. .+.+|||+|++ ..++..++.
T Consensus 3 ~~~i~v~G~~~~GKssl~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~------ 73 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTI-QLIQN--HFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMR------ 73 (166)
T ss_dssp EEEEEEEESTTSSHHHHHH-HHHHS--SCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHH------
T ss_pred eeEEEEECCCCCCHHHHHH-HHHhC--cCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhc------
Confidence 4679999999999999998 78763 33333222221 46789999976 334444555
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
.+|++++|||++++.+++.+..|+..+.......+.|+++|+||+|+.+ +.+..+++.++++.++++++++||++
T Consensus 74 ----~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~ 148 (166)
T 2ce2_X 74 ----TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKT 148 (166)
T ss_dssp ----HCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTT
T ss_pred ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCC
Confidence 7999999999999999999999999998776556899999999999866 56778889999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy5810 195 VYKTDELLVGIARQAGL 211 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~ 211 (250)
|.|++++|+++.+.+.+
T Consensus 149 ~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 149 RQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987753
No 73
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.8e-28 Score=192.26 Aligned_cols=149 Identities=21% Similarity=0.343 Sum_probs=119.1
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee----------EEEEEeCCCCc--cccCCCccccccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF----------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~ 116 (250)
.+||+++|++|||||||++ ++.+.. ....++.+.+.. .+.+|||+|++ ..++..++.
T Consensus 3 ~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~-------- 73 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVL-RFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSIS-------- 73 (172)
T ss_dssp EEEEEEECCTTSSHHHHHH-HHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHH--------
T ss_pred ceEEEEECCCCCCHHHHHH-HHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcc--------
Confidence 4779999999999999998 787731 112222222221 57899999986 334444555
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
.+|++++|||++++.+|+.+..|+..+.+... ..+.|+++|+||+|+.+.+.+..+++..++..++++++++||++|
T Consensus 74 --~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (172)
T 2erx_A 74 --KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLN 151 (172)
T ss_dssp --HCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTT
T ss_pred --cCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCC
Confidence 79999999999999999999999888866532 257899999999999877788888999999999999999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQAG 210 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~ 210 (250)
.|++++|+++.+.+.
T Consensus 152 ~gi~~l~~~l~~~~~ 166 (172)
T 2erx_A 152 HNVKELFQELLNLEK 166 (172)
T ss_dssp BSHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHh
Confidence 999999999987654
No 74
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.95 E-value=2.3e-28 Score=200.14 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=123.2
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce----------------eEEEEEeCCCCc--cccCCCcccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV----------------FFIVYSDTNHTQ--RCLTPMPFCS 109 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~----------------~~i~i~Dt~g~~--~~~~~~~~~~ 109 (250)
....+||+|+|++|||||||++ +|++. .+...+.++. ..+.+|||+|++ ..++..++.
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~- 83 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYIN-RVLDG--RFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYI- 83 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHC-BCTTC--STTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHT-
T ss_pred ccCccEEEEECCCCCCHHHHHH-HHhcC--CCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhh-
Confidence 4456889999999999999998 88863 3333222222 247899999986 445555666
Q ss_pred ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810 110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVE 189 (250)
Q Consensus 110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 189 (250)
++|++|+|||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++...++++++
T Consensus 84 ---------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 153 (218)
T 4djt_A 84 ---------GASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFE 153 (218)
T ss_dssp ---------TCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEE
T ss_pred ---------cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEE
Confidence 8999999999999999999999999987653 356899999999999877788999999999999999999
Q ss_pred EecCCCCCHHHHHHHHHHHHHhhhhh
Q psy5810 190 TSVGLVYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~~~~~~ 215 (250)
+||++|.|++++|.+|++.+......
T Consensus 154 ~Sa~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 154 ISAKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp EBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred EecCCCCCHHHHHHHHHHHHhccccc
Confidence 99999999999999999988765443
No 75
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.95 E-value=4e-28 Score=194.68 Aligned_cols=153 Identities=12% Similarity=-0.004 Sum_probs=121.4
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhcccc-cc-----------ccccccCc------------eeEEEEEeCCCCc--c
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQV-EN-----------FVQTYHPD------------VFFIVYSDTNHTQ--R 100 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~-----------~~~~~~~~------------~~~i~i~Dt~g~~--~ 100 (250)
.....+||+|+|++|||||||++ .+.+.. .. ..++++.+ ...+.+|||+|++ .
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 44567889999999999999995 655421 11 11122111 1268899999986 4
Q ss_pred ccCCCccccccccccccCCCcEEEEEEeCC------CHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHH
Q psy5810 101 CLTPMPFCSQVENFVQTYHPDVFVIVYSVI------ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS 174 (250)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~ad~iilV~D~~------~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~ 174 (250)
.++..+++ ++|++|+|||++ +.++|+.+..|+.++. ....++|+++|+||+|+.+ .++.+
T Consensus 89 ~~~~~~~~----------~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~--~~~~~~piilv~NK~Dl~~--~~~~~ 154 (198)
T 3t1o_A 89 ASRKLILR----------GVDGIVFVADSAPNRLRANAESMRNMRENLAEYG--LTLDDVPIVIQVNKRDLPD--ALPVE 154 (198)
T ss_dssp HHHHHHTT----------TCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT--CCTTSSCEEEEEECTTSTT--CCCHH
T ss_pred HHHHHHHh----------cCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc--cccCCCCEEEEEEchhccc--ccCHH
Confidence 55566676 899999999999 6688889999998883 2457899999999999965 47889
Q ss_pred HHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 175 DGKKLAYAWGV-KFVETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 175 ~~~~~~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
++.++++.+++ +++++||++|.|++++|++|++.+.+...
T Consensus 155 ~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 155 MVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp HHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence 99999999999 99999999999999999999998886544
No 76
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.95 E-value=1.9e-27 Score=191.26 Aligned_cols=148 Identities=18% Similarity=0.202 Sum_probs=119.4
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce----------------------------------------
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV---------------------------------------- 87 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~---------------------------------------- 87 (250)
..+||+|+|++|||||||++ +|++.. ....++.+..+
T Consensus 6 ~~~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVL-RLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHH-HHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHH-HHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 35779999999999999998 787731 11122222111
Q ss_pred --------eEEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEE
Q psy5810 88 --------FFIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI 157 (250)
Q Consensus 88 --------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pii 157 (250)
..+.+|||+|++ ..++..++. .+|++++|||++++.+|+.+..|+..+.... +.|++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~pii 151 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYR----------GATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIII 151 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHT----------TCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEE
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhc----------CCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEE
Confidence 467899999986 333444555 8999999999999999999999999997652 49999
Q ss_pred EEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 158 LVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 158 lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
+|+||+| ...+.+..+++.++++..+++++++||++|.|++++|++|.+.+.++
T Consensus 152 lv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 152 LVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKN 205 (208)
T ss_dssp EEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 9999999 55577889999999999999999999999999999999999888754
No 77
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.95 E-value=3.9e-28 Score=196.60 Aligned_cols=146 Identities=13% Similarity=0.068 Sum_probs=114.8
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+.+||+++|++|||||||++ ++.+.. ..+.++.+.+.. .+.+|||+|++ +.++..+++ +
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~-~l~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~----------~ 92 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLH-MLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLP----------A 92 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHH-HHSCC------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGGGG----------G
T ss_pred CCcEEEEECCCCCCHHHHHH-HHhcCCCCccCCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHHHh----------c
Confidence 45679999999999999998 787731 122334444433 67899999986 556667777 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-----------------
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA----------------- 182 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~----------------- 182 (250)
+|++++|||++++++|+.+..|+.++.+.....++|+++|+||+|+.+ .++.+++.+++..
T Consensus 93 ~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (198)
T 1f6b_A 93 INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNA 170 (198)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCS
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccC
Confidence 999999999999999999999999987654456899999999999965 5677888777653
Q ss_pred hCCeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 183 WGVKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 183 ~~~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
.++++++|||++|.||+++|++|.+.
T Consensus 171 ~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 171 RPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp CCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999864
No 78
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.95 E-value=4.7e-28 Score=196.90 Aligned_cols=151 Identities=23% Similarity=0.349 Sum_probs=117.9
Q ss_pred CccccccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcc
Q psy5810 44 NFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPF 107 (250)
Q Consensus 44 ~~~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~ 107 (250)
......+.+||+++|++|||||||++ +|.+ ..+...+.++.. .+.+|||+|++ ..++..++
T Consensus 23 ~~~~~~~~~ki~vvG~~~~GKSsLi~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 99 (204)
T 4gzl_A 23 NLYFQGQAIKCVVVGDGAVGKTCLLI-SYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSY 99 (204)
T ss_dssp -------CEEEEEEESTTSSHHHHHH-HHHH--SCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGC
T ss_pred hHhhcCCeEEEEEECcCCCCHHHHHH-HHHh--CCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHh
Confidence 33344567889999999999999998 7876 333333333322 45699999986 45556666
Q ss_pred ccccccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCC------------ccCHH
Q psy5810 108 CSQVENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRR------------QVTHS 174 (250)
Q Consensus 108 ~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~ 174 (250)
+ ++|++++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+.+ .++.+
T Consensus 100 ~----------~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~ 167 (204)
T 4gzl_A 100 P----------QTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYP 167 (204)
T ss_dssp T----------TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHH
T ss_pred c----------cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccccccHH
Confidence 6 899999999999999999997 7998886653 689999999999986543 37888
Q ss_pred HHHHHHHHhCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 175 DGKKLAYAWGV-KFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 175 ~~~~~~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
++..+++..++ +++++||++|.||+++|+++++.+
T Consensus 168 ~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 168 QGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp HHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence 99999999986 599999999999999999998754
No 79
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=2.1e-27 Score=193.25 Aligned_cols=148 Identities=24% Similarity=0.330 Sum_probs=119.4
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCce--------------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
..+||+++|++|||||||++ +|.+. .+...+.++. ..+.+|||+|++ ..++..++.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~-~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----- 95 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLI-VFSKD--EFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYP----- 95 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHH-HHHHS--SCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCT-----
T ss_pred cCcEEEEECcCCCCHHHHHH-HHhcC--CCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcC-----
Confidence 46789999999999999998 78773 3332222222 157899999986 445556666
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHH
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLA 180 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~ 180 (250)
++|++++|||++++.+|+.+ ..|+..+... .+++|+++|+||+|+.+. +.++.+++..++
T Consensus 96 -----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 168 (207)
T 2fv8_A 96 -----DTDVILMCFSVDSPDSLENIPEKWVPEVKHF--CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMA 168 (207)
T ss_dssp -----TCCEEEEEEETTCHHHHHHHHHTHHHHHHHH--STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred -----CCCEEEEEEECCCHHHHHHHHHHHHHHHHHh--CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHH
Confidence 89999999999999999999 6798888654 258999999999999654 568888999999
Q ss_pred HHhCC-eEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 181 YAWGV-KFVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 181 ~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
...+. +++++||++|.||+++|++|++.+.+.
T Consensus 169 ~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 169 VRIQAYDYLECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred HhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 99998 899999999999999999999988754
No 80
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.95 E-value=1.8e-27 Score=193.71 Aligned_cols=151 Identities=24% Similarity=0.356 Sum_probs=122.3
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-----------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
..+||+|+|++|||||||++ +|.+.. ....++.+.++ ..+.+|||+|++ ..++..++.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------ 91 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLV-RFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYR------ 91 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHH-HHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHT------
T ss_pred cceEEEEECCCCCCHHHHHH-HHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhc------
Confidence 45789999999999999998 787631 12223333222 157899999986 444555566
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+ ..+.+..+++..+++.++++++++||++
T Consensus 92 ----~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 165 (213)
T 3cph_A 92 ----GAMGIILVYDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKN 165 (213)
T ss_dssp ----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-TTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTT
T ss_pred ----cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-cCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCC
Confidence 899999999999999999999999998765 3357899999999999 4567888899999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhh
Q psy5810 195 VYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~ 213 (250)
|.||+++|.+|.+.+.+..
T Consensus 166 ~~gi~~l~~~l~~~~~~~~ 184 (213)
T 3cph_A 166 DDNVNEIFFTLAKLIQEKI 184 (213)
T ss_dssp TBSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999887643
No 81
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.95 E-value=7.6e-29 Score=193.47 Aligned_cols=147 Identities=13% Similarity=0.019 Sum_probs=109.0
Q ss_pred EEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCCCc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPD 121 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad 121 (250)
+||+++|++|||||||++ ++.+.. ....++.+.... .+.+|||+|++ +.++..++. ++|
T Consensus 1 ~ki~~~G~~~~GKssl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~~d 69 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILY-KLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ----------NTQ 69 (164)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHCSSCCCCCSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTT----------TCS
T ss_pred CEEEEECCCCCCHHHHHH-HHHcCCcCcccCcCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhc----------cCC
Confidence 479999999999999998 787631 112233332221 67899999986 344455566 899
Q ss_pred EEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH-----HHHhCCeEEEEecCCCC
Q psy5810 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL-----AYAWGVKFVETSVGLVY 196 (250)
Q Consensus 122 ~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~-----~~~~~~~~~evSa~~~~ 196 (250)
++++|||++++++|+.+..|+..+.......+.|+++|+||+|+.+.. ..++.... +...+++++++||++|.
T Consensus 70 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 147 (164)
T 1r8s_A 70 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGD 147 (164)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCc
Confidence 999999999999999999999988765445689999999999996532 22222221 22235679999999999
Q ss_pred CHHHHHHHHHHHHHh
Q psy5810 197 KTDELLVGIARQAGL 211 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~ 211 (250)
|++++|+++++.+.+
T Consensus 148 gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 148 GLYEGLDWLSNQLRN 162 (164)
T ss_dssp THHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999987653
No 82
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.95 E-value=3.8e-29 Score=202.24 Aligned_cols=151 Identities=20% Similarity=0.301 Sum_probs=114.6
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccc--cccccccCce-----------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVE--NFVQTYHPDV-----------FFIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~--~~~~~~~~~~-----------~~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
...+||+|+|++|||||||++ +|.+... ...++.+.+. ..+.+|||+|++ ..++..+++
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----- 104 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLL-RFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYR----- 104 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTT-SSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--C-----
T ss_pred CcceEEEEECCCCCCHHHHHH-HHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhh-----
Confidence 346889999999999999998 8887311 1122222222 157899999986 556677777
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
++|++|+|||++++.+|+.+..|+..+... ...++|+++|+||+|+.+.+.++.+++..+++.++++++++||+
T Consensus 105 -----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~ 178 (199)
T 3l0i_B 105 -----GAHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAK 178 (199)
T ss_dssp -----CCSEEEECC-CCCSHHHHHHHHHHHHHHSC-C-CCSEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC-
T ss_pred -----cCCEEEEEEECCCHHHHHHHHHHHHHHHHh-ccCCCCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECC
Confidence 899999999999999999999999998554 33579999999999998777788788899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy5810 194 LVYKTDELLVGIARQAGL 211 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~ 211 (250)
+|.||+++|.+|++.+.+
T Consensus 179 ~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 179 NATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp --HHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
No 83
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.95 E-value=1.1e-27 Score=192.66 Aligned_cols=146 Identities=16% Similarity=0.126 Sum_probs=114.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+.+||+++|++|||||||++ ++.+. ...+.++.+.+.. .+.+|||+|++ +.++..+++ +
T Consensus 22 ~~~ki~~vG~~~vGKSsli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~ 90 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLH-MLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFP----------E 90 (190)
T ss_dssp --CEEEEEESTTSSHHHHHH-HHHHSCCCCCCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGGCT----------T
T ss_pred CccEEEEECCCCCCHHHHHH-HHhcCCCCccccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHHHh----------c
Confidence 44579999999999999998 78763 1123334444433 67899999987 455566666 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH------------hCCeE
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA------------WGVKF 187 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~------------~~~~~ 187 (250)
+|++++|||++++++|+.+..|+.++.+.....++|+++|+||+|+.+ .++.+++.+++.. .+++|
T Consensus 91 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T 1m2o_B 91 VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEV 168 (190)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEE
T ss_pred CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEE
Confidence 999999999999999999999999987654456899999999999965 5667777666542 34679
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q psy5810 188 VETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~~ 208 (250)
+++||++|.||+++|+++++.
T Consensus 169 ~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 169 FMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp EECBTTTTBSHHHHHHHHHTT
T ss_pred EEeECCcCCCHHHHHHHHHhh
Confidence 999999999999999999753
No 84
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.95 E-value=6.9e-28 Score=189.08 Aligned_cols=148 Identities=12% Similarity=0.069 Sum_probs=112.4
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccc-ccccccccCce-------eEEEEEeCCCCc--cccCCCccccccccccccCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDV-------FFIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~-------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~a 120 (250)
.+||+++|++|||||||++ ++.+.. ....++.+.+. ..+.+|||+|++ ..++..++. ++
T Consensus 7 ~~~i~v~G~~~~GKssl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~----------~~ 75 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILY-RLQVGEVVTTIPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYS----------NT 75 (171)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHSSCCCCCCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGGGCT----------TC
T ss_pred ccEEEEECCCCCCHHHHHH-HHhcCCCCCcCCcCccceEEEEECCEEEEEEECCCChhhhHHHHHHhc----------cC
Confidence 4679999999999999998 786631 11223333222 167899999986 455666666 89
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH-----HHHHHhCCeEEEEecCCC
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK-----KLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~evSa~~~ 195 (250)
|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+... .++.. .++...+++++++||++|
T Consensus 76 d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (171)
T 1upt_A 76 DAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKG 153 (171)
T ss_dssp SEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTC
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCC
Confidence 99999999999999999999998886654446899999999999965432 22222 223344678999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy5810 196 YKTDELLVGIARQAGL 211 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~ 211 (250)
.|++++|+++++.+.+
T Consensus 154 ~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 154 TGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999988764
No 85
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.95 E-value=1.8e-27 Score=190.25 Aligned_cols=153 Identities=10% Similarity=0.068 Sum_probs=114.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+.+||+++|++|||||||++ ++.++. ....++.+.+.. .+.+|||+|++ ..++..++. +
T Consensus 15 ~~~~i~v~G~~~~GKssl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~ 83 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILY-QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT----------N 83 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHH-HHHTTSCEEEECCSCSSCEEEEETTEEEEEEECCC----CGGGHHHHT----------T
T ss_pred CccEEEEECCCCCCHHHHHH-HHhcCCCCcCcCCCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------C
Confidence 45779999999999999998 788631 122333333222 67899999986 445555666 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-----HhCCeEEEEecCC
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-----AWGVKFVETSVGL 194 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~~ 194 (250)
+|++++|||++++++|+.+..|+..+.+.....+.|+++|+||+|+.+ ....++..+... ..+++++++||++
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 161 (187)
T 1zj6_A 84 TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALT 161 (187)
T ss_dssp CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCC
Confidence 999999999999999999999999987654446899999999999965 334455544432 3456899999999
Q ss_pred CCCHHHHHHHHHHHHHhhhhh
Q psy5810 195 VYKTDELLVGIARQAGLNKKR 215 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~~~~ 215 (250)
|.|++++|++|++.+......
T Consensus 162 g~gi~~l~~~l~~~~~~~~~~ 182 (187)
T 1zj6_A 162 GEGLCQGLEWMMSRLKIRLEH 182 (187)
T ss_dssp TBTHHHHHHHHHHHHCC----
T ss_pred CcCHHHHHHHHHHHHHHHhhh
Confidence 999999999999987655443
No 86
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.95 E-value=5.2e-27 Score=188.04 Aligned_cols=149 Identities=16% Similarity=0.081 Sum_probs=115.0
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
..+.+||+|+|++|||||||++ +|.+.. .+...+.++++ .+.+|||+|++ +.++..++.
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~-~l~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------ 89 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIIN-KLKPSN-AQSQNILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWEHYYK------ 89 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHH-HTSCGG-GCCSSCCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGGGGGG------
T ss_pred CCCccEEEEECCCCCCHHHHHH-HHhcCC-CCCCCcCCccceeEEEEEECCEEEEEEECCCCHHHHHHHHHHHh------
Confidence 3456789999999999999998 788742 12333333332 67899999986 455566666
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC--CCCcEEEEeeCCCccCCCccCHHHHHHHHH-----HhCCeE
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI--GEKAVILVANKADLERRRQVTHSDGKKLAY-----AWGVKF 187 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~--~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~ 187 (250)
++|++++|||++++.+|+.+..|+..+.+.... .++|+++|+||+|+.+ .++.++..++.. ..++++
T Consensus 90 ----~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~ 163 (190)
T 2h57_A 90 ----EGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHI 163 (190)
T ss_dssp ----GCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEE
T ss_pred ----cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEE
Confidence 899999999999999999999999998765433 6899999999999965 345566666553 235789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q psy5810 188 VETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+++||++|.||+++|++|.+.+.
T Consensus 164 ~~~Sa~~~~gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 164 CASDAIKGEGLQEGVDWLQDQIQ 186 (190)
T ss_dssp EECBTTTTBTHHHHHHHHHHHC-
T ss_pred EEccCCCCcCHHHHHHHHHHHHH
Confidence 99999999999999999998664
No 87
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.95 E-value=1.2e-27 Score=196.59 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=122.0
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhccc--cccccccccCcee-----------EEEEEeCCCCc--cccCCCcccccc
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQ--VENFVQTYHPDVF-----------FIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~--~~~~~~~~~~~~~-----------~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
.....+||+++|++|||||||++ +|+.+ .....++.+.+.. .+.+|||+|++ ..++..+++
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--- 86 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVK-RHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYI--- 86 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHT-TBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHT---
T ss_pred CcccceEEEEECCCCCCHHHHHH-HHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHh---
Confidence 34566889999999999999998 76652 1122333333322 57789999986 455666676
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
++|++++|||++++.+|+.+..|+..+.+.. .++|+++|+||+|+.+... . .+...+++..+++|+++|
T Consensus 87 -------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~S 155 (221)
T 3gj0_A 87 -------QAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDIS 155 (221)
T ss_dssp -------TCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECB
T ss_pred -------cCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEe
Confidence 8999999999999999999999999997653 5899999999999975433 2 256778888999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 192 VGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
|++|.||+++|.+|.+.+.....
T Consensus 156 a~~~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 156 AKSNYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp GGGTBTTTHHHHHHHHHHHTCTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999999876543
No 88
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.95 E-value=1.5e-27 Score=190.90 Aligned_cols=150 Identities=14% Similarity=0.056 Sum_probs=114.6
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+.+||+++|++|||||||++ ++.+.. ....++.+.... .+.+|||+|++ +.++..++. +
T Consensus 21 ~~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~----------~ 89 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILY-RLHLGDVVTTVPTVGVNLETLQYKNISFEVWDLGGQTGVRPYWRCYFS----------D 89 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHH-HTCCSCCEEECSSTTCCEEEEEETTEEEEEEEECCSSSSCCCCSSSST----------T
T ss_pred CceEEEEECCCCCCHHHHHH-HHHcCCCCCcCCCCceEEEEEEECCEEEEEEECCCCHhHHHHHHHHhh----------c
Confidence 45779999999999999998 787631 112233333322 67899999986 566677777 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-----HHHHhCCeEEEEecCC
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-----LAYAWGVKFVETSVGL 194 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~evSa~~ 194 (250)
+|++++|||++++++|+.+..|+..+.+.....+.|+++|+||+|+.+.. ..++... .+...+++++++||++
T Consensus 90 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 167 (189)
T 2x77_A 90 TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKT 167 (189)
T ss_dssp CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCC
Confidence 99999999999999999999999988765445689999999999996532 2222222 2233456799999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy5810 195 VYKTDELLVGIARQAGLN 212 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~ 212 (250)
|.|++++|+++.+.+.+.
T Consensus 168 ~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 168 GDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp CTTHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhc
Confidence 999999999999887643
No 89
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.94 E-value=4.9e-28 Score=193.12 Aligned_cols=149 Identities=15% Similarity=0.106 Sum_probs=111.8
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
..+||+++|++|||||||++ ++.+.. ....++.+.+.. .+.+|||+|++ +.++..++. +
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~-~l~~~~~~~~~~t~g~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~----------~ 83 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLK-QLASEDISHITPTQGFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFE----------N 83 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHH-HHCCSCCEEEEEETTEEEEEEEETTEEEEEEECSSCGGGHHHHHHHHT----------T
T ss_pred CceEEEEECCCCCCHHHHHH-HHhcCCCCcccCcCCeEEEEEEECCEEEEEEECCCCHHHHHHHHHHhC----------C
Confidence 45779999999999999998 788741 122344443222 67899999986 344555666 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecCC
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVGL 194 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~ 194 (250)
+|++++|||++++++|+.+..|+.++.+.....++|+++|+||+|+.+.+. .++..+.. ...+++++++||++
T Consensus 84 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (181)
T 1fzq_A 84 TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALT 161 (181)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCC
Confidence 999999999999999999999998886544446899999999999975432 23332221 12356799999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy5810 195 VYKTDELLVGIARQAGL 211 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~ 211 (250)
|.||+++|+++++.+.+
T Consensus 162 g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 162 GEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp CTTHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999987654
No 90
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.94 E-value=7.1e-27 Score=186.37 Aligned_cols=150 Identities=11% Similarity=0.062 Sum_probs=114.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+.+||+++|++|||||||++ ++.+.. ....++.+.+.. .+.+|||+|++ ..++..++. +
T Consensus 17 ~~~~i~v~G~~~~GKssl~~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~----------~ 85 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILK-KFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFE----------S 85 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHH-HHTTCCCSSCCCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCT----------T
T ss_pred CeeEEEEECCCCCCHHHHHH-HHhcCCCCcccccCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------C
Confidence 45779999999999999998 787742 112223332221 67899999986 455666666 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecCC
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVGL 194 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~~ 194 (250)
+|++++|||++++.+|+.+..|+..+.+.....++|+++|+||+|+.+.. ..++..+.. ...+++++++||++
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1ksh_A 86 TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVT 163 (186)
T ss_dssp CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTT
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCC
Confidence 99999999999999999999999988765445689999999999996543 333333322 13456899999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy5810 195 VYKTDELLVGIARQAGLN 212 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~ 212 (250)
|.|++++|+++.+.+.+.
T Consensus 164 ~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 164 GEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp CTTHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhc
Confidence 999999999999887654
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.94 E-value=3.8e-28 Score=195.61 Aligned_cols=148 Identities=11% Similarity=0.045 Sum_probs=108.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+.+||+|+|++|||||||++ ++.++. ....++.+.... .+.+|||+|++ ..++..++. +
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~ 96 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILY-KLKLGEIVTTIPTIGFNVETVEYKNICFTVWDVGGQDKIRPLWRHYFQ----------N 96 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHH-HHCSSCCEEEEEETTEEEEEEEETTEEEEEEECC-----CTTHHHHHH----------T
T ss_pred CccEEEEECCCCCCHHHHHH-HHHhCCccccCCcCceeEEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------c
Confidence 45789999999999999998 787631 112233332221 67899999986 344445555 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-----HHHHhCCeEEEEecCC
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-----LAYAWGVKFVETSVGL 194 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~evSa~~ 194 (250)
+|++++|||++++++|+.+..|+..+.+.....++|+++|+||+|+.+.. ..++..+ ++...+++++++||++
T Consensus 97 ~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~ 174 (192)
T 2b6h_A 97 TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQ 174 (192)
T ss_dssp CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTT
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCC
Confidence 99999999999999999999999998765445689999999999996532 2222221 1122346799999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy5810 195 VYKTDELLVGIARQAG 210 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~ 210 (250)
|.|++++|++|++.+.
T Consensus 175 g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 175 GTGLYDGLDWLSHELS 190 (192)
T ss_dssp TBTHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.94 E-value=4.8e-28 Score=194.05 Aligned_cols=149 Identities=13% Similarity=0.084 Sum_probs=112.4
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce----e-------EEEEEeCCCCc--cccCCCccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV----F-------FIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~----~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
..+.+||+|+|++|||||||++ +|.+ ..+...+.+++ . .+.+|||+|++ ..++..++.
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------ 89 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVN-VIAS--GQFNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWERYCR------ 89 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHH-HHHH--SCCCCSCCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHHHHT------
T ss_pred CCCccEEEEECCCCCCHHHHHH-HHHc--CCCCCccCCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHHHHc------
Confidence 3456889999999999999998 7876 33333333332 2 57799999986 444555555
Q ss_pred cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEE
Q psy5810 115 VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVE 189 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~e 189 (250)
++|++|+|||++++++|+.+..|+..+.+.....++|+++|+||+|+.+. ...++..+.. ...++++++
T Consensus 90 ----~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 163 (188)
T 1zd9_A 90 ----GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYS 163 (188)
T ss_dssp ----TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEE
T ss_pred ----cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEE
Confidence 89999999999999999999999998866444468999999999999653 2223222211 123467999
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy5810 190 TSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~~ 211 (250)
+||++|.||+++|++|++.+.+
T Consensus 164 ~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 164 ISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CCTTTCTTHHHHHHHHHHTCC-
T ss_pred EECCCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999986654
No 93
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.94 E-value=4.8e-27 Score=186.98 Aligned_cols=148 Identities=11% Similarity=0.063 Sum_probs=111.8
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccc-cccccccCcee-------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT 117 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~ 117 (250)
..+.+||+++|++|||||||++ +|.+... ...++.+.+.. .+.+|||+|++ ..++..++.
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~--------- 87 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILY-QFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYT--------- 87 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHH-HHHTTSCEEEECCSSSSCEEEEETTEEEEEEEESSSGGGTCGGGGGGT---------
T ss_pred CCceeEEEEECCCCCCHHHHHH-HHhcCCCCccCCcCceeeEEEEECCEEEEEEECCCCHhHHHHHHHHhc---------
Confidence 3456789999999999999998 7877311 22333333322 67899999986 455566666
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEec
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSV 192 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa 192 (250)
++|++++|||++++++|+.+..|+..+.+.....++|+++|+||+|+.+. ...++..+.. ...+++++++||
T Consensus 88 -~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa 164 (181)
T 2h17_A 88 -NTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCA 164 (181)
T ss_dssp -TCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBT
T ss_pred -cCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccC
Confidence 89999999999999999999999998876443578999999999999652 3344444433 234568999999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy5810 193 GLVYKTDELLVGIARQ 208 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~ 208 (250)
++|.|++++|++|++.
T Consensus 165 ~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 165 LTGEGLCQGLEWMMSR 180 (181)
T ss_dssp TTTBTHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHhh
Confidence 9999999999999754
No 94
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.94 E-value=1.1e-26 Score=184.40 Aligned_cols=150 Identities=13% Similarity=0.032 Sum_probs=111.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccc-cccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ 119 (250)
+.+||+++|++|||||||++ ++.++ .....++.+.... .+.+|||+|++ ..++..++. +
T Consensus 17 ~~~~i~v~G~~~~GKssli~-~l~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~----------~ 85 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILY-RLQIGEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYA----------D 85 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHH-HTCCSEEEEECSSTTCCEEEEEETTEEEEEEEEC----CCTTGGGTTT----------T
T ss_pred CccEEEEECCCCCCHHHHHH-HHhcCCcCccCCcCccceEEEEECCEEEEEEECCCCHhHHHHHHHHhc----------c
Confidence 45779999999999999998 78763 1122333333222 67799999986 445556666 8
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHH-----HhCCeEEEEecCC
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY-----AWGVKFVETSVGL 194 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~evSa~~ 194 (250)
+|++++|||++++++|+.+..|+..+.+.....+.|+++|+||+|+.+. ...++..+... ..+++++++||++
T Consensus 86 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~ 163 (183)
T 1moz_A 86 TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIK 163 (183)
T ss_dssp EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGG
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCC
Confidence 9999999999999999999999999876544578999999999998653 33444443322 2345799999999
Q ss_pred CCCHHHHHHHHHHHHHhh
Q psy5810 195 VYKTDELLVGIARQAGLN 212 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~~ 212 (250)
|.|++++|+++.+.+.++
T Consensus 164 ~~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 164 GEGITEGLDWLIDVIKEE 181 (183)
T ss_dssp TBTHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhc
Confidence 999999999999887643
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.94 E-value=1.5e-27 Score=190.64 Aligned_cols=149 Identities=14% Similarity=0.114 Sum_probs=112.7
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccc----cccccCce--------------eEEEEEeCCCCc--cccCCCccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENF----VQTYHPDV--------------FFIVYSDTNHTQ--RCLTPMPFCSQ 110 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~----~~~~~~~~--------------~~i~i~Dt~g~~--~~~~~~~~~~~ 110 (250)
.+||+|+|++|||||||++ +|++....+ .++.+.++ ..+.+|||+|++ ..+++.+++
T Consensus 2 ~~kv~ivG~~gvGKStLl~-~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~-- 78 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQ-QLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMT-- 78 (184)
T ss_dssp -CEEEEESCTTSSHHHHHH-HHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHH--
T ss_pred ceEEEEECCCCCCHHHHHH-HHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHcc--
Confidence 4679999999999999998 888742222 22332221 157799999986 455666666
Q ss_pred cccccccCCCcEEEEEEeCCCH-HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC---HHHHHHHHHHhCCe
Q psy5810 111 VENFVQTYHPDVFVIVYSVIER-KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT---HSDGKKLAYAWGVK 186 (250)
Q Consensus 111 ~~~~~~~~~ad~iilV~D~~~~-~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~---~~~~~~~~~~~~~~ 186 (250)
+++++++|||++++ .+|+.+..|+.++... ..++|+++||||+|+.+.+.++ .+.+..+++.++++
T Consensus 79 --------~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 148 (184)
T 2zej_A 79 --------QRALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFP 148 (184)
T ss_dssp --------HSEEEEEEEEGGGCHHHHHTHHHHHHHHHHH--CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSC
T ss_pred --------CCcEEEEEEeCCcchhHHHHHHHHHHHHHhh--CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCc
Confidence 79999999999997 5899999999998654 2578999999999997654443 34456677777886
Q ss_pred ----EEEEecCCCC-CHHHHHHHHHHHHHhh
Q psy5810 187 ----FVETSVGLVY-KTDELLVGIARQAGLN 212 (250)
Q Consensus 187 ----~~evSa~~~~-~I~~lf~~l~~~i~~~ 212 (250)
|+++||+++. ++.++++.+.+.+.+.
T Consensus 149 ~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 149 AIRDYHFVNATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp EEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred chhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence 9999999997 9999999998877653
No 96
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.89 E-value=3.1e-28 Score=197.53 Aligned_cols=147 Identities=22% Similarity=0.357 Sum_probs=118.7
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQV 111 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~ 111 (250)
..+.+||+++|++|||||||++ +|.+ ..+...+.++.. .+.+|||+|++ ..++..++.
T Consensus 27 ~~~~~ki~v~G~~~~GKSsli~-~l~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~--- 100 (204)
T 3th5_A 27 QGQAIKCVVVGDGAVGKTCLLI-SYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYP--- 100 (204)
Confidence 4566889999999999999998 7876 333333333321 45699999986 456666777
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCC------------ccCHHHHHH
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRR------------QVTHSDGKK 178 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~------------~v~~~~~~~ 178 (250)
++|++++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+.+ .++.+++.+
T Consensus 101 -------~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~ 171 (204)
T 3th5_A 101 -------QTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLA 171 (204)
Confidence 899999999999999999997 7888885532 389999999999996532 567788888
Q ss_pred HHHHhCC-eEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 179 LAYAWGV-KFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 179 ~~~~~~~-~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
+++.+++ +++++||++|.||+++|+++++.+
T Consensus 172 ~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 172 MAKEIGAVKYLECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9998888 899999999999999999998765
No 97
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.93 E-value=1.6e-26 Score=186.47 Aligned_cols=147 Identities=10% Similarity=0.042 Sum_probs=112.1
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccC--------------ceeEEEEEeCCCCcc--ccC---CCccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHP--------------DVFFIVYSDTNHTQR--CLT---PMPFC 108 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~--------------~~~~i~i~Dt~g~~~--~~~---~~~~~ 108 (250)
..+.+||+++|++|||||||++ ++.+.... ..+.+. ....+.+|||+|+++ ... ..+++
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~-~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQK-VVFHKMSP-NETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHH-HHHSCCCG-GGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cCcceEEEEECCCCCCHHHHHH-HHHhcCCC-cceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 4455779999999999999997 66663110 011111 112678999999873 333 46666
Q ss_pred cccccccccCCCcEEEEEEeCCCH--HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC-------CCccCHHHHHHH
Q psy5810 109 SQVENFVQTYHPDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER-------RRQVTHSDGKKL 179 (250)
Q Consensus 109 ~~~~~~~~~~~ad~iilV~D~~~~--~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-------~~~v~~~~~~~~ 179 (250)
++|++|+|||++++ ++++.+..|+.++... ..++|++|||||+|+.+ .+.+..+++.++
T Consensus 95 ----------~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~ 162 (196)
T 3llu_A 95 ----------GTGALIYVIDAQDDYMEALTRLHITVSKAYKV--NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDL 162 (196)
T ss_dssp ----------TCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH--CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------cCCEEEEEEECCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHH
Confidence 89999999999997 7888888888887442 46899999999999743 456777788888
Q ss_pred HH----HhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 180 AY----AWGVKFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 180 ~~----~~~~~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
++ .++++|+++||++ .||+++|..+++.+
T Consensus 163 ~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 163 ADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp HHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred HHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence 88 7788999999999 99999999999865
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.93 E-value=1.4e-25 Score=194.44 Aligned_cols=147 Identities=22% Similarity=0.337 Sum_probs=121.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee--------------EEEEEeCCCCc--cccCCCcccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF--------------FIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~--------------~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
..+||+++|++|||||||++ ++.+ ..+...+.+++. .+.+|||+|++ ..++..++.
T Consensus 154 ~~~~i~i~G~~~~GKssli~-~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~----- 225 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLI-SYTT--NAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYP----- 225 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHH-HHHH--SCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCT-----
T ss_pred ceeEEEEECCCCCChHHHHH-HHHh--CCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhcc-----
Confidence 44789999999999999998 7776 333333333332 45699999986 455566666
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC------------CccCHHHHHHHH
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR------------RQVTHSDGKKLA 180 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~------------~~v~~~~~~~~~ 180 (250)
++|++++|||++++.+|+.+. .|+..+.... .++|+++|+||+|+.+. +.++.+++.+++
T Consensus 226 -----~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~ 298 (332)
T 2wkq_A 226 -----QTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA 298 (332)
T ss_dssp -----TCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred -----CCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHH
Confidence 899999999999999999997 7988886542 48999999999998543 678899999999
Q ss_pred HHhCC-eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 181 YAWGV-KFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 181 ~~~~~-~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
+..++ +|+++||++|.||+++|+++++.+..
T Consensus 299 ~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 299 KEIGAVKYLECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp HHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred HHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence 99997 89999999999999999999988764
No 99
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=4.8e-27 Score=202.85 Aligned_cols=146 Identities=11% Similarity=0.077 Sum_probs=111.7
Q ss_pred EEEEEcCCCCchhhhchhhhcccc-c----cccccccCcee------EEEEEeCCCCcccc-----CCCccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQV-E----NFVQTYHPDVF------FIVYSDTNHTQRCL-----TPMPFCSQVENFVQ 116 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~-~----~~~~~~~~~~~------~i~i~Dt~g~~~~~-----~~~~~~~~~~~~~~ 116 (250)
||+++|++|||||||++ ++.+.. . .+.+|++.... ++++|||+||++.. ++.||+
T Consensus 1 KIvllGdsgvGKTSLl~-~~~~~~~~~~~~~~~~Tig~~~~~v~~~v~LqIWDTAGQErf~~~~l~~~~yyr-------- 71 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICK-VVFHNMQPLDTLYLESTSNPSLEHFSTLIDLAVMELPGQLNYFEPSYDSERLFK-------- 71 (331)
T ss_dssp CEEEECSTTSSTTHHHH-HHHSCCCSGGGTTCCCCCSCCCEEECSSSCEEEEECCSCSSSCCCSHHHHHHHT--------
T ss_pred CEEEECCCCCCHHHHHH-HHHcCCCCCccceecCeeeeeeEEEccEEEEEEEECCCchhccchhhhhhhhcc--------
Confidence 69999999999999997 665531 1 12344444433 68999999998543 356778
Q ss_pred cCCCcEEEEEEeCCCH--HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC-------CccCHHHHHHHHHH----h
Q psy5810 117 TYHPDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR-------RQVTHSDGKKLAYA----W 183 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~--~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~-------~~v~~~~~~~~~~~----~ 183 (250)
+++++|+|||++++ ++++.+..|+.++.+. .+++|++++|||+|+..+ |.|..++++++++. +
T Consensus 72 --~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~--~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~ 147 (331)
T 3r7w_B 72 --SVGALVYVIDSQDEYINAITNLAMIIEYAYKV--NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGV 147 (331)
T ss_dssp --TCSEEEEECCCSSCTTHHHHHHHHHHHHHHHH--CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCC
T ss_pred --CCCEEEEEEECCchHHHHHHHHHHHHHHHhhc--CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhccccc
Confidence 99999999999998 3444444455555332 468999999999999653 56888888899886 6
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 184 GVKFVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 184 ~~~~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
+++|+||||++ .+|.++|..+++.+...
T Consensus 148 ~i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 148 QVSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred CceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 88999999998 59999999999887754
No 100
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.93 E-value=6.6e-25 Score=177.36 Aligned_cols=149 Identities=21% Similarity=0.230 Sum_probs=121.1
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCce---------------eEEEEEeCCCCc--cccCCCcccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV---------------FFIVYSDTNHTQ--RCLTPMPFCSQVEN 113 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~---------------~~i~i~Dt~g~~--~~~~~~~~~~~~~~ 113 (250)
.+||+|+|++|||||||++ ++++ ..+...+.+++ ..+.+|||+|++ +.++..++.
T Consensus 5 ~~kv~lvG~~g~GKSTLl~-~l~~--~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~----- 76 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLS-RFTR--NEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYR----- 76 (199)
T ss_dssp EEEEEEESSTTSSHHHHHH-HHHH--SCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHT-----
T ss_pred eEEEEEECcCCCCHHHHHH-HHhc--CCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHh-----
Confidence 4789999999999999998 7887 33322222221 146689999986 344555566
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
+++++++|||+++..+|+++..|+..+... ...+.|+++|+||+|+.+.+.+..+++..++...++.++++||+
T Consensus 77 -----~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal 150 (199)
T 2f9l_A 77 -----GAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSAL 150 (199)
T ss_dssp -----TCSEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTT
T ss_pred -----cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCC
Confidence 899999999999999999999999887543 34578999999999998777888889999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q psy5810 194 LVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~~ 213 (250)
++.|+.++|+++.+.+.+..
T Consensus 151 ~~~~i~~l~~~l~~~~~~~~ 170 (199)
T 2f9l_A 151 DSTNVEEAFKNILTEIYRIV 170 (199)
T ss_dssp TCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999887543
No 101
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.92 E-value=1e-24 Score=175.39 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=119.6
Q ss_pred CcccccCCccccccEEEEEEEcCCCCchhhhchhhhccccccccccccCce------e---------EEEEEeCCCCc--
Q psy5810 37 PFCSTVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------F---------FIVYSDTNHTQ-- 99 (250)
Q Consensus 37 ~~~~~~~~~~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------~---------~i~i~Dt~g~~-- 99 (250)
|.|.++... +....+||+|+|++|||||||++ ++.+. .+...+.+++ . .+.+|||+|++
T Consensus 16 ~~~~~~~~~-~~~~~~kv~lvG~~g~GKSTLl~-~l~~~--~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~ 91 (191)
T 1oix_A 16 GRAMGTRDD-EYDYLFKVVLIGDSGVGKSNLLS-RFTRN--EFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY 91 (191)
T ss_dssp --------C-CCSEEEEEEEEECTTSSHHHHHH-HHHHS--CCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSS
T ss_pred CcccCCccc-ccCcceEEEEECcCCCCHHHHHH-HHhcC--CCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcch
Confidence 344444442 22345789999999999999998 78773 3332222221 1 34579999986
Q ss_pred cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810 100 RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179 (250)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 179 (250)
..++..++. .++++++|||+++..+|+++..|+..+.+. ...+.|+++++||+|+.+.+.+..+++..+
T Consensus 92 ~~~~~~~~~----------~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l 160 (191)
T 1oix_A 92 RAITSAYYR----------GAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 160 (191)
T ss_dssp SCCCHHHHT----------TCCEEEEEEETTCHHHHHTHHHHHHHHHHH-SCTTCEEEEEEECGGGGGGCCSCHHHHHHH
T ss_pred hhhhHHHhh----------cCCEEEEEEECcCHHHHHHHHHHHHHHHHh-cCCCCcEEEEEECcccccccccCHHHHHHH
Confidence 345555566 789999999999999999999999887543 335789999999999987777888899999
Q ss_pred HHHhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 180 AYAWGVKFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 180 ~~~~~~~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
+...++.++++||+++.|++++|+++.+.+
T Consensus 161 ~~~~~~~~ld~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 161 AEKNGLSFIETSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp HHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999998765
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.92 E-value=2.9e-25 Score=186.88 Aligned_cols=90 Identities=19% Similarity=0.252 Sum_probs=75.8
Q ss_pred CCcEEEEEEeCCCH--HhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHH-hCCeEEEEecCCC
Q psy5810 119 HPDVFVIVYSVIER--KTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA-WGVKFVETSVGLV 195 (250)
Q Consensus 119 ~ad~iilV~D~~~~--~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~-~~~~~~evSa~~~ 195 (250)
++|++|+|||++++ .||+.+..|+.++.+.....++|++|||||+|+.+.+.+ +++.++++. .+++|+++||++|
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g 239 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSN 239 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTT
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCC
Confidence 58999999999999 999999999999876533467999999999999765555 577788876 4889999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQAG 210 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~ 210 (250)
.||+++|++|++.+.
T Consensus 240 ~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 240 VNVDLAFSTLVQLID 254 (255)
T ss_dssp BSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998764
No 103
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.92 E-value=9.7e-25 Score=180.20 Aligned_cols=162 Identities=11% Similarity=0.033 Sum_probs=111.2
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccc-c-----ccCce-------eEEEEEeCCCCccccC-CCc---ccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-T-----YHPDV-------FFIVYSDTNHTQRCLT-PMP---FCSQV 111 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~-----~~~~~-------~~i~i~Dt~g~~~~~~-~~~---~~~~~ 111 (250)
.+.+||+|+|++|||||||++ +|++. .+.. . ..... ..+.+|||+|+...-. ... +. ..
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin-~l~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~-~~ 102 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMN-IVSRA--NVDVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMT-TI 102 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHH-HHTTT--CEEEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHH-HHhCC--CCccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHH-HH
Confidence 345779999999999999998 78874 3221 1 11111 2578999999842100 000 00 00
Q ss_pred ccccccCCCcEEEEEEeCCCHHhHHH--HHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHH---HHHHHHHHhC--
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHS---DGKKLAYAWG-- 184 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~Sf~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~---~~~~~~~~~~-- 184 (250)
..+ ...+|++|+|||++++.+|+. ...|+..+... ..++|+++|+||+|+.+.+.+..+ ....++...+
T Consensus 103 ~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 178 (228)
T 2qu8_A 103 TAL--AHINGVILFIIDISEQCGLTIKEQINLFYSIKSV--FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNP 178 (228)
T ss_dssp HHH--HTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC--C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSC
T ss_pred HHh--hccccEEEEEEecccccCcchHHHHHHHHHHHHh--hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCC
Confidence 111 127899999999999988752 34566666432 247999999999999776677654 4566777777
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhhhhhhhH
Q psy5810 185 VKFVETSVGLVYKTDELLVGIARQAGLNKKRNKL 218 (250)
Q Consensus 185 ~~~~evSa~~~~~I~~lf~~l~~~i~~~~~~~~~ 218 (250)
++++++||++|.||+++|++|++.+.+.+.....
T Consensus 179 ~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~~ 212 (228)
T 2qu8_A 179 IKFSSFSTLTGVGVEQAKITACELLKNDQAESIL 212 (228)
T ss_dssp EEEEECCTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEecccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999998766554333
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.92 E-value=3.7e-25 Score=173.69 Aligned_cols=150 Identities=15% Similarity=0.077 Sum_probs=104.9
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccccccc--c--cccCce-------eEEEEEeCCCCccccCCCccccccccccccCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFV--Q--TYHPDV-------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~--~--~~~~~~-------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ 119 (250)
.+||+++|++|||||||++ ++.+...... + +..... ..+.+|||+|+++.............+....+
T Consensus 3 ~~~v~lvG~~gvGKStL~~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFN-ALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINEK 81 (165)
T ss_dssp EEEEEEECSTTSSHHHHHH-HHHCCSSSCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHH-HHhCCCeeccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhHHHHHHHHhcCC
Confidence 4679999999999999998 7877311100 1 111111 26789999998743211100111111211126
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD 199 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~ 199 (250)
+|++++|+|.++.++ ...|+.++.+ .+.|+++|+||+|+...+.++. ++.++++.++++++++||++|.|++
T Consensus 82 ~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 82 PDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp CSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 899999999998654 4557777754 3789999999999865555543 4678888899999999999999999
Q ss_pred HHHHHHHHHH
Q psy5810 200 ELLVGIARQA 209 (250)
Q Consensus 200 ~lf~~l~~~i 209 (250)
++|+++++.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 105
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.92 E-value=6.9e-26 Score=197.49 Aligned_cols=147 Identities=14% Similarity=0.039 Sum_probs=109.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccc---cccCcee-------EEEEEeCCCCc--cccCCCcccccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ---TYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQT 117 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~---~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~ 117 (250)
+.+||+|+|++|||||||++ +|.+. .+.. |.+..+. .+.+|||+|++ ..++..+++
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~-~l~~~--~~~~~~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~--------- 231 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILY-KLKLG--EIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ--------- 231 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHH-HTCSS--CCEEEEEETTEEEEEEEETTEEEEEEECC-----CCSHHHHHT---------
T ss_pred CcceEEEECCCCccHHHHHH-HHhCC--CCCCcccccceEEEEEecCcEEEEEEECCCCHhHHHHHHHHhc---------
Confidence 45789999999999999998 78773 3332 3332222 67899999986 444555666
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEec
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSV 192 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa 192 (250)
++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+.+.. ..++..... ...+++++++||
T Consensus 232 -~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSA 308 (329)
T 3o47_A 232 -NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCA 308 (329)
T ss_dssp -TEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBT
T ss_pred -cCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEEC
Confidence 899999999999999999999988888665555689999999999997533 222222211 223457999999
Q ss_pred CCCCCHHHHHHHHHHHHHh
Q psy5810 193 GLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 193 ~~~~~I~~lf~~l~~~i~~ 211 (250)
++|.||+++|++|++.+.+
T Consensus 309 k~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 309 TSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTTBTHHHHHHHHHHHHTC
T ss_pred CCCcCHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 106
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.92 E-value=4.6e-25 Score=190.53 Aligned_cols=150 Identities=15% Similarity=0.119 Sum_probs=116.2
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccccccc-ccccCcee------------EEEEEeCCCCcc-------ccCCCccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPDVF------------FIVYSDTNHTQR-------CLTPMPFCSQ 110 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~~~------------~i~i~Dt~g~~~-------~~~~~~~~~~ 110 (250)
.+||+++|++|||||||++ ++.+....+. ..+++|++ .+.+|||+|+++ .++..+++
T Consensus 3 ~~KI~lvG~~~vGKSSLi~-~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~-- 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRS-IIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFTKQKDHIFQ-- 79 (307)
T ss_dssp EEEEEEECCTTSSHHHHHH-HHHSCCCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHTTTHHHHHT--
T ss_pred ceEEEEECCCCCCHHHHHH-HHHhCCCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhhhHHHHHhc--
Confidence 4689999999999999998 7776422322 23444432 577999999973 23344455
Q ss_pred cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhh-hCCCCCcEEEEeeCCCccC--CCc----cCHHHHHHHHHHh
Q psy5810 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDS-KYIGEKAVILVANKADLER--RRQ----VTHSDGKKLAYAW 183 (250)
Q Consensus 111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~-~~~~~~piilv~nK~Dl~~--~~~----v~~~~~~~~~~~~ 183 (250)
++|++|+|||++++++|+++..|...+... ...+++|+++||||+|+.+ .+. +..+++.++++.+
T Consensus 80 --------~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 80 --------MVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF 151 (307)
T ss_dssp --------TCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred --------cCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc
Confidence 899999999999999999997775554332 1246799999999999965 454 6778899999999
Q ss_pred C---CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 184 G---VKFVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 184 ~---~~~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
| ++++++||++ .++.++|..++..+...
T Consensus 152 g~~~~~~~~tSa~~-~~i~e~~~~iv~~li~~ 182 (307)
T 3r7w_A 152 GFPNLIGFPTSIWD-ESLYKAWSQIVCSLIPN 182 (307)
T ss_dssp TCCSCEEEECCTTS-SHHHHHHHHHHHTTCSC
T ss_pred CCCCeEEEEeeecC-ChHHHHHHHHHHHHcCC
Confidence 7 6899999999 89999999999876543
No 107
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.92 E-value=1e-25 Score=183.83 Aligned_cols=148 Identities=12% Similarity=0.089 Sum_probs=98.8
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccccCce-------------eEEEEEeCCCCc--cc-cCCCcccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-------------FFIVYSDTNHTQ--RC-LTPMPFCSQV 111 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-------------~~i~i~Dt~g~~--~~-~~~~~~~~~~ 111 (250)
..+.+||+++|++|||||||++ +|++. .+...+.++. ..+.+|||+|++ .. ++..+++
T Consensus 4 ~~~~~ki~vvG~~~~GKTsli~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~--- 77 (214)
T 2fh5_B 4 KSSQRAVLFVGLCDSGKTLLFV-RLLTG--QYRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQLLDRFKS--- 77 (214)
T ss_dssp ----CEEEEECSTTSSHHHHHH-HHHHS--CCCCBCCCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHHHHHHHGG---
T ss_pred CCCCCEEEEECCCCCCHHHHHH-HHhCC--CcccccCCcceeeEEEEecCCCccEEEEEECCCChhHHHHHHHHHHh---
Confidence 3445779999999999999998 78773 3443333221 258899999987 23 4555666
Q ss_pred ccccccCCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhh--hCCCCCcEEEEeeCCCccCCCccCH--HHHH---------
Q psy5810 112 ENFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDS--KYIGEKAVILVANKADLERRRQVTH--SDGK--------- 177 (250)
Q Consensus 112 ~~~~~~~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~--~~~~~~piilv~nK~Dl~~~~~v~~--~~~~--------- 177 (250)
++|++|+|||+++.. ++..+..|+..+... ....++|+++|+||+|+.+.+.... +...
T Consensus 78 -------~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~ 150 (214)
T 2fh5_B 78 -------SARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVT 150 (214)
T ss_dssp -------GEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred -------hCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhcc
Confidence 899999999999964 566665554444322 2345789999999999965433211 1111
Q ss_pred -----------------------HHHH-Hh--CCeEEEEecCCC------CCHHHHHHHHHHH
Q psy5810 178 -----------------------KLAY-AW--GVKFVETSVGLV------YKTDELLVGIARQ 208 (250)
Q Consensus 178 -----------------------~~~~-~~--~~~~~evSa~~~------~~I~~lf~~l~~~ 208 (250)
.|+. .+ +++|+||||++| .||+++|++|.+.
T Consensus 151 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 151 RSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp CC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred chhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 1111 11 567999999999 9999999999875
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.92 E-value=2.9e-25 Score=203.51 Aligned_cols=156 Identities=10% Similarity=0.014 Sum_probs=115.0
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee-------EEEEEeCCCCc--cccCCCccccccccccccC
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF-------FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~-------~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~ 118 (250)
.+.+||+|+|++|||||||++ +|.+.. ....+|.+.++. .+.+|||+|++ +.++..+++
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~-~l~~~~~~~~~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---------- 388 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILY-KLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYT---------- 388 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHH-HHHHSSCCCCCCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGGGGT----------
T ss_pred ccceeEEEEcCCCCCHHHHHH-HHhcCCCCCcCCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHHHhc----------
Confidence 356889999999999999999 787642 112233333333 67899999986 556667777
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-----HHhCCeEEEEecC
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-----YAWGVKFVETSVG 193 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~evSa~ 193 (250)
++|++|+|||++++++|+.+..|+.++.+.....++|+|||+||+|+.+. .+.++..... ...+++++++||+
T Consensus 389 ~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~ 466 (497)
T 3lvq_E 389 GTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCAT 466 (497)
T ss_dssp TCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHHHTTCTTCCSSCEEEEECBTT
T ss_pred cCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHHHhchhhhhcCCeEEEEEECC
Confidence 89999999999999999999999999876655568999999999999653 2333322221 1234569999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhh
Q psy5810 194 LVYKTDELLVGIARQAGLNKKRNK 217 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~~~~~~ 217 (250)
+|.||+++|++|.+.+.+..+...
T Consensus 467 ~g~gi~~l~~~l~~~~~~~~~~~~ 490 (497)
T 3lvq_E 467 SGDGLYEGLTWLTSNYKSKLAAAL 490 (497)
T ss_dssp TTBTHHHHHHHHHHHCC-------
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCC
Confidence 999999999999987765544433
No 109
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.91 E-value=4.6e-25 Score=175.93 Aligned_cols=146 Identities=14% Similarity=0.030 Sum_probs=106.8
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccccccCcee---------EEEEEeCCCCc-------------cccCCCcccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF---------FIVYSDTNHTQ-------------RCLTPMPFCS 109 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~---------~i~i~Dt~g~~-------------~~~~~~~~~~ 109 (250)
+||+++|++|||||||++ ++.+. .+...+.+++. .+.+|||+|.. ..++..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~-~l~~~--~~~~~~~~~~t~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~- 77 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIY-RLTGK--KVRRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIE- 77 (190)
T ss_dssp CEEEEEEBTTSSHHHHHH-HHHSC--CCSSSSSTTCTTSCEEEEETTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHH-
T ss_pred cEEEEECCCCCCHHHHHH-HHhCc--CCccCCCCCccceeEEEecCCEEEEECCCccccccCCHHHHHHHHHHHHHHHH-
Confidence 579999999999999998 88874 33333322221 57899999942 122223333
Q ss_pred ccccccccCC-CcEEEEEEeCCCHHhHHHH-HHHHHH--------HHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH
Q psy5810 110 QVENFVQTYH-PDVFVIVYSVIERKTFKKA-EDMLKT--------LWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL 179 (250)
Q Consensus 110 ~~~~~~~~~~-ad~iilV~D~~~~~Sf~~~-~~~~~~--------i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~ 179 (250)
+ ++++++||++.|..+|+.+ ..|... +.......++|+++|+||+|+...+ .+++.++
T Consensus 78 ---------~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~ 145 (190)
T 2cxx_A 78 ---------DNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFL 145 (190)
T ss_dssp ---------HHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHH
T ss_pred ---------hhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHH
Confidence 4 7778888888888888887 667653 2222223579999999999986543 5678888
Q ss_pred HHHhCCe-------EEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 180 AYAWGVK-------FVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 180 ~~~~~~~-------~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
++.++++ ++++||++|.|++++|+++++.+.+.+
T Consensus 146 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 146 AEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 9888874 699999999999999999999886543
No 110
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.90 E-value=2.5e-23 Score=164.15 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=99.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccc----cCce---------eEEEEEeCCCCc--cccCCCccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY----HPDV---------FFIVYSDTNHTQ--RCLTPMPFCSQVENF 114 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~----~~~~---------~~i~i~Dt~g~~--~~~~~~~~~~~~~~~ 114 (250)
+.+||+++|++|||||||++ +|.+. .+...+ ..+. ..+.+|||+|++ ..++..++.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~------ 77 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLD-AIRHS--KVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRARGAQ------ 77 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHH-HHHTT--CSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCSSCC------
T ss_pred CCCEEEEECCCCCCHHHHHH-HHhCC--ccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHHHHh------
Confidence 34569999999999999998 78773 222211 1111 267899999986 445555555
Q ss_pred cccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-------C
Q psy5810 115 VQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-------G 184 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-------~ 184 (250)
.+|++++|||+++ +.+++.+ ..+. ..++|+++|+||+|+.+. ..++........ +
T Consensus 78 ----~~d~~i~v~d~~~~~~~~~~~~l----~~~~----~~~~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~ 142 (178)
T 2lkc_A 78 ----VTDIVILVVAADDGVMPQTVEAI----NHAK----AANVPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWG 142 (178)
T ss_dssp ----CCCEEEEEEETTCCCCHHHHHHH----HHHG----GGSCCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTT
T ss_pred ----hCCEEEEEEECCCCCcHHHHHHH----HHHH----hCCCCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcC
Confidence 8999999999998 4555433 2222 247899999999998652 233333333222 2
Q ss_pred --CeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 185 --VKFVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 185 --~~~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
++++++||++|.|++++|++|++.+...+
T Consensus 143 ~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 143 GDTIFCKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SSEEEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred CcccEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 47999999999999999999998776543
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.90 E-value=1e-23 Score=168.07 Aligned_cols=155 Identities=15% Similarity=0.079 Sum_probs=108.4
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCce-----------eEEEEEeCCCCccccCCCccccccccccccC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~ 118 (250)
+.+||+++|++|||||||++ ++++.........+.+. ..+.+|||+|++..............+....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~-~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 84 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFN-ALTGENVYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDEIIARDYIINE 84 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHH-HHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH-HHhCCCccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHHHHHHHHHhcc
Confidence 45789999999999999998 78873111111111111 1578999999874321110001111111111
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+...+.+. .++.++++.++++++++||+++.|+
T Consensus 85 ~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v 156 (188)
T 2wjg_A 85 KPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGI 156 (188)
T ss_dssp CCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCH
Confidence 5899999999885 5566778887754 478999999999986655554 4577888899999999999999999
Q ss_pred HHHHHHHHHHHHhhh
Q psy5810 199 DELLVGIARQAGLNK 213 (250)
Q Consensus 199 ~~lf~~l~~~i~~~~ 213 (250)
+++|+++++.+....
T Consensus 157 ~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 157 EELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999998886654
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.89 E-value=1.1e-23 Score=168.88 Aligned_cols=148 Identities=11% Similarity=-0.001 Sum_probs=96.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee--------EEEEEeCCCC----------c--cccCCCcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF--------FIVYSDTNHT----------Q--RCLTPMPF 107 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~--------~i~i~Dt~g~----------~--~~~~~~~~ 107 (250)
..++|+|+|++|||||||++ ++.+.. ....++.+.+.. .+.+|||+|- + ..++..++
T Consensus 22 ~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFIN-SLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYI 100 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHH-HHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH-HHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCccccCHHHHHHHHHHHHHHH
Confidence 45679999999999999998 787731 122223322221 5789999992 2 12222233
Q ss_pred ccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCH--HHHHH-HHHHhC
Q psy5810 108 CSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTH--SDGKK-LAYAWG 184 (250)
Q Consensus 108 ~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~--~~~~~-~~~~~~ 184 (250)
. ....+|++++|+|++++.++.... ++..+.. .+.|+++|+||+|+.+.+.+.. +++.+ ++...+
T Consensus 101 ~-------~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 168 (195)
T 1svi_A 101 T-------TREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPE 168 (195)
T ss_dssp H-------HCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTT
T ss_pred h-------hhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCC
Confidence 2 111349999999999988877643 2222222 5789999999999976554432 22332 332346
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 185 VKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 185 ~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
++++++||++|.|++++|+++.+.+.
T Consensus 169 ~~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 169 DELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp SEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CceEEEEccCCCCHHHHHHHHHHHhc
Confidence 78999999999999999999988664
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.88 E-value=4.7e-24 Score=168.75 Aligned_cols=147 Identities=11% Similarity=0.098 Sum_probs=99.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccccccc-ccCce-----------eEEEEEeCCCCccccCCCcccc--cccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQT-YHPDV-----------FFIVYSDTNHTQRCLTPMPFCS--QVENFVQT 117 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~-~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~--~~~~~~~~ 117 (250)
.||+|+|++|||||||++ ++.+....+... .+.+. ..+.+|||+|+++... .+.. ....+..+
T Consensus 5 ~ki~ivG~~g~GKStLl~-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~ 81 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLN-ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASD--EVERIGIERAWQEI 81 (172)
T ss_dssp EEEEEEESTTSSHHHHHH-HHHTSCCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSS--HHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHhCCCcceeeCCCCceeceeeEEEEECCeEEEEEECCCcccchh--HHHHHHHHHHHHHH
Confidence 579999999999999998 787742111111 11111 1578999999863210 0000 00001111
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
+++|++++|||++++.+++. ..|+..+.+. ...++|+++|+||+|+.+... .++...+.+++++||++|.|
T Consensus 82 ~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~-~~~~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~g 152 (172)
T 2gj8_A 82 EQADRVLFMVDGTTTDAVDP-AEIWPEFIAR-LPAKLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEG 152 (172)
T ss_dssp HTCSEEEEEEETTTCCCCSH-HHHCHHHHHH-SCTTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTT
T ss_pred HhCCEEEEEEECCCCCCHHH-HHHHHHHHHh-cccCCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCC
Confidence 28999999999999988874 5677777554 345799999999999854211 12223467899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy5810 198 TDELLVGIARQAG 210 (250)
Q Consensus 198 I~~lf~~l~~~i~ 210 (250)
++++|+++.+.+.
T Consensus 153 v~~l~~~l~~~~~ 165 (172)
T 2gj8_A 153 VDVLRNHLKQSMG 165 (172)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
No 114
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.88 E-value=9.7e-23 Score=171.79 Aligned_cols=152 Identities=18% Similarity=0.072 Sum_probs=107.6
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~ 118 (250)
+.+||+++|++|||||||++ +|++.........+.+++ .+.+|||+|++.......-......+....
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n-~l~g~~~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 82 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFN-ALTGTKQYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKG 82 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHH-HHHTTCEEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHH-HHHCCCCcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhc
Confidence 45789999999999999999 888742221222222322 678999999874321110000001111112
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
++|++++|+|.++.++.. .|...+.. .++|+++|+||+|+...+.+.. ++.++++.++++++++||++|.|+
T Consensus 83 ~~d~ii~V~D~t~~~~~~---~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi 154 (258)
T 3a1s_A 83 DADLVILVADSVNPEQSL---YLLLEILE----MEKKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGL 154 (258)
T ss_dssp CCSEEEEEEETTSCHHHH---HHHHHHHT----TTCCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTH
T ss_pred CCCEEEEEeCCCchhhHH---HHHHHHHh----cCCCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCH
Confidence 799999999999976543 46666643 3799999999999866555543 477889999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy5810 199 DELLVGIARQAG 210 (250)
Q Consensus 199 ~~lf~~l~~~i~ 210 (250)
+++|+++.+.+.
T Consensus 155 ~el~~~i~~~~~ 166 (258)
T 3a1s_A 155 EELKEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998765
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.88 E-value=1.5e-23 Score=162.64 Aligned_cols=145 Identities=17% Similarity=0.007 Sum_probs=94.0
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccc-cccCce-----------eEEEEEeCCCCccccCCCccccccccc-cccC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYHPDV-----------FFIVYSDTNHTQRCLTPMPFCSQVENF-VQTY 118 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~~~~-----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~-~~~~ 118 (250)
.||+++|++|||||||++ ++.+....+.. ..+.+. ..+.+|||+|+..... ......+.. ..++
T Consensus 2 ~ki~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFN-RLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK--WEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSS--CCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHH-HHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc--hHHHHHHHHHHHHH
Confidence 479999999999999998 78764211111 111111 1678999999874211 100000000 0112
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCCC
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVYK 197 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~~ 197 (250)
.+|++++|||++++.+... .|+.+..+. .++|+++|+||+|+.+.+ +++.+++ .+++ +++++||++|.|
T Consensus 79 ~~~~~i~v~d~~~~~~~~~--~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQAD--YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp TCSEEEEEEESSSCCCHHH--HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred hCCEEEEEEECCCcccHhH--HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence 8999999999998644432 233333222 478999999999986532 3344555 6777 799999999999
Q ss_pred HHHHHHHHHHHH
Q psy5810 198 TDELLVGIARQA 209 (250)
Q Consensus 198 I~~lf~~l~~~i 209 (250)
++++|+++++.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998764
No 116
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.88 E-value=6.2e-23 Score=189.70 Aligned_cols=152 Identities=12% Similarity=0.080 Sum_probs=114.3
Q ss_pred ccccEEEEEEEcCCCCchhhhchhhhcccc--ccccccccCce-------------------eEEEEEeCCCCc--cccC
Q psy5810 47 QTYHHVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDV-------------------FFIVYSDTNHTQ--RCLT 103 (250)
Q Consensus 47 ~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~-------------------~~i~i~Dt~g~~--~~~~ 103 (250)
.....+||+++|++|||||||++ ++.+.. ....++.+.++ ..+.+|||+|++ ..+.
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~-~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~ 115 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLK-QLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH 115 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHH-HHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC
T ss_pred ccccceEEEEECCCCCCHHHHHH-HHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH
Confidence 35667899999999999999998 888742 11222222222 268899999986 4555
Q ss_pred CCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh
Q psy5810 104 PMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183 (250)
Q Consensus 104 ~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~ 183 (250)
..+++ ++|++|+|||+++. +.+..|+.++.... .+.|+++||||+|+.+.+.+..+++.+++...
T Consensus 116 ~~~l~----------~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~ 180 (535)
T 3dpu_A 116 QFFMT----------RSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPAI 180 (535)
T ss_dssp HHHHH----------SSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGG
T ss_pred HHHcc----------CCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHhc
Confidence 55666 89999999999865 55677888887653 47999999999999877888889999999999
Q ss_pred CCeEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 184 GVKFVETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 184 ~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
+++++++||++|.||+++|..+.+.+.....
T Consensus 181 ~~~~~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 181 ENRFHRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp TTCEEECCC-----CTTHHHHHHHHHTCTTS
T ss_pred CCceEEEecCcccCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998876543
No 117
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.87 E-value=1.5e-22 Score=171.82 Aligned_cols=151 Identities=14% Similarity=0.057 Sum_probs=105.9
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCce----------eEEEEEeCCCCccccCCCccccccccccccCCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV----------FFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHP 120 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~----------~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~a 120 (250)
.+||+++|++|||||||+| +|++.........|.++ ..+.+|||+|++..............+....++
T Consensus 3 ~~kI~lvG~~nvGKSTL~n-~L~g~~~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~ 81 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFN-LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRA 81 (272)
T ss_dssp CEEEEEECCTTSSHHHHHH-HHHCCCCCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCC
T ss_pred ceEEEEECCCCCCHHHHHH-HHHCCCCcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCChHHHHHHHHHhcCCC
Confidence 3679999999999999999 88874211111112222 257899999987432111000111111111269
Q ss_pred cEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE 200 (250)
Q Consensus 121 d~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~ 200 (250)
|++++|+|.++.+++ ..|..++.. .++|+++|+||+|+...+.+. .++..+++.++++++++||++|.||++
T Consensus 82 d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~e 153 (272)
T 3b1v_A 82 DSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQ 153 (272)
T ss_dssp SEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHH
T ss_pred CEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHH
Confidence 999999999987654 346666643 478999999999986555554 456788889999999999999999999
Q ss_pred HHHHHHHHHH
Q psy5810 201 LLVGIARQAG 210 (250)
Q Consensus 201 lf~~l~~~i~ 210 (250)
+|.++++.+.
T Consensus 154 l~~~i~~~~~ 163 (272)
T 3b1v_A 154 VVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHSCT
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.87 E-value=1.1e-22 Score=162.54 Aligned_cols=147 Identities=14% Similarity=0.027 Sum_probs=101.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-ccccccccCcee--------EEEEEeCCCCc------------cccCCCccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-ENFVQTYHPDVF--------FIVYSDTNHTQ------------RCLTPMPFC 108 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~~~~~~~~~~~--------~i~i~Dt~g~~------------~~~~~~~~~ 108 (250)
..+||+++|++|||||||++ ++.+.. ....++.+.+.. .+.+|||+|.. ..++..+++
T Consensus 22 ~~~~i~v~G~~~~GKSsli~-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 100 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLN-ALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFK 100 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHH-HHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHh
Confidence 44679999999999999998 787742 122233332222 57799999932 122222332
Q ss_pred cccccccccCCCcEEEEEEeCCCHHh--HHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC--CccCHHHHHHHHHHhC
Q psy5810 109 SQVENFVQTYHPDVFVIVYSVIERKT--FKKAEDMLKTLWDSKYIGEKAVILVANKADLERR--RQVTHSDGKKLAYAWG 184 (250)
Q Consensus 109 ~~~~~~~~~~~ad~iilV~D~~~~~S--f~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~ 184 (250)
....+|++++|+|.++..+ +..+..|+... ++|+++|+||+|+.+. +....+++.+++...+
T Consensus 101 -------~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-------~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 101 -------NRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-------NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp -------HCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-------TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred -------cCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-------CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 1125699999999988643 34444555432 6899999999998542 3344556666776644
Q ss_pred -CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 185 -VKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 185 -~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
++++++||++|.||+++|+++.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999999987753
No 119
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.87 E-value=1.7e-22 Score=174.57 Aligned_cols=159 Identities=14% Similarity=0.024 Sum_probs=114.9
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcccccc-ccccccCc------------eeEEEEEeCCCCccccCCC----ccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPD------------VFFIVYSDTNHTQRCLTPM----PFCSQ 110 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~------------~~~i~i~Dt~g~~~~~~~~----~~~~~ 110 (250)
+...-+|+++|.+|||||||+| ++++.... .....+.+ -..+.+|||+|+.+..... .+...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin-~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~ 85 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLN-NLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI 85 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHH-HHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCcHHHHHH-HHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence 4455679999999999999999 78874211 11111111 1257899999986422100 00001
Q ss_pred cccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEE
Q psy5810 111 VENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFV 188 (250)
Q Consensus 111 ~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~ 188 (250)
...+ ++++|++++|+|++++.++++...|+..+.. .++|+++|+||+|+...+....+....+.+.++ .+++
T Consensus 86 ~~~~--l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~ 159 (308)
T 3iev_A 86 AKQS--LEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIV 159 (308)
T ss_dssp HHHH--HHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEE
T ss_pred HHHH--hhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEE
Confidence 1111 1279999999999999999888888887754 478999999999987445556677778888875 6799
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
++||++|.|++++|+++.+.+....
T Consensus 160 ~vSA~~g~gv~~L~~~l~~~l~~~~ 184 (308)
T 3iev_A 160 PISALKGANLDELVKTILKYLPEGE 184 (308)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCBCC
T ss_pred EEeCCCCCCHHHHHHHHHHhCccCC
Confidence 9999999999999999999886543
No 120
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.86 E-value=6.4e-23 Score=167.62 Aligned_cols=140 Identities=10% Similarity=0.072 Sum_probs=99.2
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccc---cccCcee------EEEEEeCCCCcc--ccCCCcccccccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ---TYHPDVF------FIVYSDTNHTQR--CLTPMPFCSQVENFVQT 117 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~---~~~~~~~------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~ 117 (250)
...++|+++|++|||||||++ ++.+. .+.. .+.+++. .+.+|||+|++. ..+..+++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~------ 80 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLT-LLTTD--SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA------ 80 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHH-HHHHS--SCCCBCCCSSCEEETTGGGSSCEEEECCCCGGGTHHHHHHHHHHG------
T ss_pred CCCCEEEEECCCCCCHHHHHH-HHhcC--CCCCeeeecCceEEEEeeCceEEEEECCCcHHHHHHHHHHHHhcc------
Confidence 345679999999999999998 78773 3322 3444443 688999999863 33444444100
Q ss_pred CCCcEEEEEEeCC-CHHhHHHHHHHHHHHHhhh---CCCCCcEEEEeeCCCccCCCccC------HHHHHHHHHHhCCeE
Q psy5810 118 YHPDVFVIVYSVI-ERKTFKKAEDMLKTLWDSK---YIGEKAVILVANKADLERRRQVT------HSDGKKLAYAWGVKF 187 (250)
Q Consensus 118 ~~ad~iilV~D~~-~~~Sf~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v~------~~~~~~~~~~~~~~~ 187 (250)
..+|++|+|||++ ++.+|+.+..|+.++.... ...++|+++|+||+|+...+.+. .+++..++...+++|
T Consensus 81 ~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (218)
T 1nrj_B 81 KFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSL 160 (218)
T ss_dssp GGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccc
Confidence 0289999999999 8999999999998886543 34689999999999997766554 556777888888889
Q ss_pred EEEecCCCCC
Q psy5810 188 VETSVGLVYK 197 (250)
Q Consensus 188 ~evSa~~~~~ 197 (250)
+++||++|.+
T Consensus 161 ~~~Sa~~~~~ 170 (218)
T 1nrj_B 161 NEVERKINEE 170 (218)
T ss_dssp HC--------
T ss_pred cccccccccc
Confidence 9999999875
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.86 E-value=2.1e-22 Score=169.49 Aligned_cols=147 Identities=13% Similarity=0.049 Sum_probs=102.2
Q ss_pred EEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCC----Ccccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTP----MPFCSQVENFVQT 117 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~----~~~~~~~~~~~~~ 117 (250)
+|+++|++|||||||+| ++.+.........+.+++ .+.+|||||++..... .........+...
T Consensus 3 kI~lvG~~n~GKSTL~n-~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~ 81 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFN-ALTNANQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVID 81 (256)
T ss_dssp EEEEEESTTSSHHHHHH-HHHTTSEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHCCCCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhh
Confidence 69999999999999999 888753222222233322 5789999998743211 1001111112211
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCC
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYK 197 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~ 197 (250)
.++|++|+|+|.++.+++..+..|+.+ .++|+++|+||+|+.+.+.+.. ....+++.++++++++||++|.|
T Consensus 82 ~~~d~vi~VvDas~~~~~~~l~~~l~~-------~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~g 153 (256)
T 3iby_A 82 LEYDCIINVIDACHLERHLYLTSQLFE-------LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIG 153 (256)
T ss_dssp SCCSEEEEEEEGGGHHHHHHHHHHHTT-------SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBS
T ss_pred CCCCEEEEEeeCCCchhHHHHHHHHHH-------cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCC
Confidence 289999999999998776655444332 3789999999999865443322 24557888899999999999999
Q ss_pred HHHHHHHHHHH
Q psy5810 198 TDELLVGIARQ 208 (250)
Q Consensus 198 I~~lf~~l~~~ 208 (250)
++++|.++.+.
T Consensus 154 i~el~~~i~~~ 164 (256)
T 3iby_A 154 IPALQQSLLHC 164 (256)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.85 E-value=4.6e-22 Score=169.07 Aligned_cols=152 Identities=12% Similarity=0.046 Sum_probs=105.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccC--CCc-cc-ccccccc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLT--PMP-FC-SQVENFV 115 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~--~~~-~~-~~~~~~~ 115 (250)
.++|+++|++|||||||+| ++++.........+.+++ .+.+|||+|++.... ..+ .. .....+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin-~l~g~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~ 81 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFN-QLTGSRQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYI 81 (274)
T ss_dssp CEEEEEEECTTSSHHHHHH-HHHTTCEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHH-HHhCCCcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHHH
Confidence 4679999999999999999 888753222222222222 678999999874321 111 00 0111122
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
...++|++|+|+|.++.+++..+..|+.+. ++|+++|+||+|+.+.+.+.. ....+++.++++++++||++|
T Consensus 82 ~~~~~d~ii~VvD~~~~~~~~~~~~~l~~~-------~~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g 153 (274)
T 3i8s_A 82 LSGDADLLINVVDASNLERNLYLTLQLLEL-------GIPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRG 153 (274)
T ss_dssp HHTCCSEEEEEEEGGGHHHHHHHHHHHHHH-------TCCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGG
T ss_pred hhcCCCEEEEEecCCChHHHHHHHHHHHhc-------CCCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCC
Confidence 223899999999999977665554444433 689999999999865444322 256778888999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy5810 196 YKTDELLVGIARQAGL 211 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~ 211 (250)
.|++++|.++.+.+..
T Consensus 154 ~gi~el~~~i~~~~~~ 169 (274)
T 3i8s_A 154 RGIEALKLAIDRYKAN 169 (274)
T ss_dssp HHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999876653
No 123
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.85 E-value=1.6e-20 Score=165.34 Aligned_cols=159 Identities=11% Similarity=0.055 Sum_probs=111.6
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccccc----ccccCcee-------EEEEEeCCCCccccCCCcccccccccccc-
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVF-------FIVYSDTNHTQRCLTPMPFCSQVENFVQT- 117 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~-------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~- 117 (250)
..++|+++|.+|||||||++ ++.+...... .+.+..+. .+.+|||+|..................+.
T Consensus 166 ~~~~v~lvG~~gvGKSTLin-~L~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 244 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLK-ALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAILALR 244 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHH-HHCSSCCEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHHGGG
T ss_pred CCCEEEEECCCCCCHHHHHH-HHhCCCCccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHHHHH
Confidence 34579999999999999998 8887421111 11111222 47899999986321111000000000011
Q ss_pred CCCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 118 YHPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
..+|++++|+|++++. +++....|+..+.... .+.|+++|+||+|+.....+ +++.+++...+++++++||++|
T Consensus 245 ~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g 320 (357)
T 2e87_A 245 YLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKG 320 (357)
T ss_dssp GTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTT
T ss_pred hcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCC
Confidence 1689999999999987 7888888999887653 27999999999998654332 4566777788899999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q psy5810 196 YKTDELLVGIARQAGLNK 213 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~~ 213 (250)
+|++++|+++.+.+....
T Consensus 321 ~gi~~l~~~i~~~l~~~~ 338 (357)
T 2e87_A 321 TGIDLVKEEIIKTLRPLA 338 (357)
T ss_dssp BTHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 999999999999886543
No 124
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.84 E-value=1.9e-21 Score=170.62 Aligned_cols=114 Identities=11% Similarity=0.089 Sum_probs=97.6
Q ss_pred EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCC----------HHhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810 89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE----------RKTFKKAEDMLKTLWDSKYIGEKAV 156 (250)
Q Consensus 89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~----------~~Sf~~~~~~~~~i~~~~~~~~~pi 156 (250)
.+.+|||+||+ +.+|..+|+ +++++|+|||+++ ..+|++...|+..+.......++|+
T Consensus 194 ~l~iwDt~GQe~~r~~w~~yf~----------~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 194 HFKMFDVGGQRSERKKWIHCFE----------GVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEEEEECCSGGGGGGGGGGCT----------TCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred eEEEEeCCCchhhhHHHHHHHh----------cCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcE
Confidence 56789999996 789999999 9999999999999 5679999999999976544568999
Q ss_pred EEEeeCCCccCCC---------------ccCHHHHHHHHH-----------HhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 157 ILVANKADLERRR---------------QVTHSDGKKLAY-----------AWGVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 157 ilv~nK~Dl~~~~---------------~v~~~~~~~~~~-----------~~~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+|+|||+|+.+.+ .++.+++.+++. ..++.+++|||+++.||.++|.++.+.+.
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~ 343 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII 343 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHH
Confidence 9999999985322 367889999887 35677999999999999999999999887
Q ss_pred hh
Q psy5810 211 LN 212 (250)
Q Consensus 211 ~~ 212 (250)
+.
T Consensus 344 ~~ 345 (353)
T 1cip_A 344 KN 345 (353)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 125
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.84 E-value=3.6e-21 Score=163.13 Aligned_cols=154 Identities=18% Similarity=0.042 Sum_probs=105.5
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccccccccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCC
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYH 119 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ 119 (250)
.+||+++|++|||||||++ ++++.........+.++. .+.+|||+|++..............+....+
T Consensus 3 ~~~i~lvG~~g~GKTTL~n-~l~g~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 81 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFN-ALTGLRQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDELIARNFILDGN 81 (271)
T ss_dssp CEEEEEEECSSSSHHHHHH-HHHTTCEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHH-HHhCCCcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHHHHHHHhhhccC
Confidence 3679999999999999998 888742222222222222 5789999998743221111111111221227
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHH
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTD 199 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~ 199 (250)
+|++++|+|.++.+. ...|...+... ..+|+++|+||+|+.+.+.+..+ ...+++.++++++++||++|.|+.
T Consensus 82 ~d~vi~v~D~~~~~~---~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~ 154 (271)
T 3k53_A 82 ADVIVDIVDSTCLMR---NLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVE 154 (271)
T ss_dssp CSEEEEEEEGGGHHH---HHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHH
T ss_pred CcEEEEEecCCcchh---hHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHH
Confidence 999999999998642 33444445432 23899999999998543333332 677888899999999999999999
Q ss_pred HHHHHHHHHHHhh
Q psy5810 200 ELLVGIARQAGLN 212 (250)
Q Consensus 200 ~lf~~l~~~i~~~ 212 (250)
++|..+...+...
T Consensus 155 ~l~~~i~~~~~~~ 167 (271)
T 3k53_A 155 ELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcc
Confidence 9999999887643
No 126
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.83 E-value=5.8e-21 Score=165.45 Aligned_cols=115 Identities=11% Similarity=0.085 Sum_probs=97.3
Q ss_pred EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCC----------CHHhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810 89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVI----------ERKTFKKAEDMLKTLWDSKYIGEKAV 156 (250)
Q Consensus 89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~----------~~~Sf~~~~~~~~~i~~~~~~~~~pi 156 (250)
.+++|||+||+ +.+|..||+ +++++|+|||++ +..+|++...|+..+.......++|+
T Consensus 168 ~l~iwDtgGQe~~R~~w~~yf~----------~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~i 237 (327)
T 3ohm_A 168 IFRMVDVGGQRSERRKWIHCFE----------NVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSV 237 (327)
T ss_dssp EEEEEEECCSHHHHTTGGGGCS----------SCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEE
T ss_pred eeEEEEcCCchhHHHHHHHHhC----------CCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceE
Confidence 56799999997 789999999 999999999654 67889998899999877655578999
Q ss_pred EEEeeCCCccCCC----------------ccCHHHHHHHHH----------HhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 157 ILVANKADLERRR----------------QVTHSDGKKLAY----------AWGVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 157 ilv~nK~Dl~~~~----------------~v~~~~~~~~~~----------~~~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+|+|||+|+.+++ .++.+++.+++. ..++.+++|||+++.||.++|..+.+.++
T Consensus 238 iL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il 317 (327)
T 3ohm_A 238 ILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL 317 (327)
T ss_dssp EEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred EEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence 9999999985433 478888988843 34567899999999999999999999888
Q ss_pred hhh
Q psy5810 211 LNK 213 (250)
Q Consensus 211 ~~~ 213 (250)
+..
T Consensus 318 ~~~ 320 (327)
T 3ohm_A 318 QLN 320 (327)
T ss_dssp HTT
T ss_pred HHh
Confidence 653
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.83 E-value=1.6e-20 Score=170.71 Aligned_cols=152 Identities=12% Similarity=0.049 Sum_probs=91.6
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccc-cCce-----------eEEEEEeCCCCccc--cCCCcccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY-HPDV-----------FFIVYSDTNHTQRC--LTPMPFCSQVENFV 115 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~-~~~~-----------~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~ 115 (250)
+.+||+|+|.+|||||||+| +|.+....+...+ +.+. ..+.+|||+|+.+. ....+ .......
T Consensus 232 ~~~kV~ivG~~nvGKSSLln-~L~~~~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~--gi~~~~~ 308 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLN-TLLGQERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHE--GIRRSRM 308 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHH-HCC------------------CEEEEETTEEEEEEC----------------------C
T ss_pred CCCEEEEECCCCCCHHHHHH-HHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHH--HHHHHHh
Confidence 45789999999999999999 7887422222221 1111 16789999998631 11110 0000011
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
.++.+|++++|+|.+++.+++.+..+...+... .+.|+++|+||+|+.+...+. ...+.+....+++++||++|
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg 382 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNG 382 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTT
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCC
Confidence 122899999999999998886443333322221 279999999999997654432 23344432468999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy5810 196 YKTDELLVGIARQAG 210 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~ 210 (250)
.||+++|+++.+.+.
T Consensus 383 ~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 383 DGIDTLKQHMGDLVK 397 (476)
T ss_dssp BSHHHHHHHHTHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999886
No 128
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.83 E-value=5.8e-21 Score=172.33 Aligned_cols=158 Identities=13% Similarity=0.047 Sum_probs=107.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccccccc-ccCce-----------eEEEEEeCCCCccccC-C---Ccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQT-YHPDV-----------FFIVYSDTNHTQRCLT-P---MPFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~-~~~~~-----------~~i~i~Dt~g~~~~~~-~---~~~~~~~~~ 113 (250)
..+||+++|++|||||||+| ++++........ .+.+. ..+.+|||+|+.+... . ..|.. ...
T Consensus 174 ~~~ki~lvG~~nvGKSSLin-~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~-~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVN-AMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSV-LRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHH-HHHTSTTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHH-HHH
T ss_pred cCcEEEEEcCCCCCHHHHHH-HHhCCCceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHH-HHH
Confidence 45889999999999999999 788742211111 11111 1678999999742211 0 11110 000
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHH-HH----hCCeEE
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA-YA----WGVKFV 188 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~-~~----~~~~~~ 188 (250)
...++.+|++++|+|++++.++++. .|+..+.. .+.|+++|+||+|+.+.+.++.++..+.. +. .+++++
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 326 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPIL 326 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEE
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEE
Confidence 0111279999999999999888876 57776643 57999999999999765555544443332 22 367899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
++||++|.|++++|..+.+.+.....
T Consensus 327 ~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 327 FMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred EEecccCCCHHHHHHHHHHHHHHhhc
Confidence 99999999999999999988765443
No 129
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=1.2e-20 Score=171.27 Aligned_cols=162 Identities=14% Similarity=0.067 Sum_probs=109.6
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccccccccc-ccCce-----------eEEEEEeCCCCcccc----CCCccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQT-YHPDV-----------FFIVYSDTNHTQRCL----TPMPFCSQVE 112 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~-~~~~~-----------~~i~i~Dt~g~~~~~----~~~~~~~~~~ 112 (250)
...+||+++|++|||||||++ ++.+........ .+.+. ..+.+|||+|..+.- ....|... .
T Consensus 193 ~~~~ki~ivG~~~vGKSslin-~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~-~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVN-AMLGEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVL-R 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHH-HHHTSTTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHH-H
T ss_pred cccceeEEecCCCCCHHHHHH-HHhCCCccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHH-H
Confidence 356789999999999999999 787642111111 11111 167899999943111 01111100 0
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-----CCeE
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-----GVKF 187 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-----~~~~ 187 (250)
....++.+|++|+|+|.++..+.. ...|+..+.. .+.|+++|+||+|+.+.+.++.+++.+.++.. ++++
T Consensus 271 ~~~~~~~ad~~llviD~~~~~~~~-~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (456)
T 4dcu_A 271 ALKAIDRSEVVAVVLDGEEGIIEQ-DKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 345 (456)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHH-HHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhhCCEEEEEEeCCCCcCHH-HHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCE
Confidence 000112799999999999864432 3445555533 57999999999999876777778888777765 5789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhhhhhhh
Q psy5810 188 VETSVGLVYKTDELLVGIARQAGLNKKRNK 217 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~~i~~~~~~~~ 217 (250)
+++||++|.||+++|.++.+.+........
T Consensus 346 ~~~SA~~g~gv~~l~~~i~~~~~~~~~~~~ 375 (456)
T 4dcu_A 346 LFMSALTKKRIHTLMPAIIKASENHSLRVQ 375 (456)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHHHHTCCCC
T ss_pred EEEcCCCCcCHHHHHHHHHHHHHHhcccCC
Confidence 999999999999999999988876554433
No 130
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.82 E-value=5.7e-21 Score=156.37 Aligned_cols=158 Identities=11% Similarity=-0.047 Sum_probs=98.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccc--cccccccCce------------eEEEEEeCCCCccccCCC----cccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE--NFVQTYHPDV------------FFIVYSDTNHTQRCLTPM----PFCSQV 111 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~--~~~~~~~~~~------------~~i~i~Dt~g~~~~~~~~----~~~~~~ 111 (250)
..++|+|+|.+|||||||++ ++++... ....+.+.+. ..+.+|||+|........ .+....
T Consensus 28 ~~~~i~v~G~~~~GKSslin-~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAIN-VLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHH-HHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH-HHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 45679999999999999999 7877421 1122222221 157799999953211000 001111
Q ss_pred cccc-ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC--HHHHHHHHHH------
Q psy5810 112 ENFV-QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT--HSDGKKLAYA------ 182 (250)
Q Consensus 112 ~~~~-~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--~~~~~~~~~~------ 182 (250)
..+. ....+|++++|+|.++..+.. ...|+..+.. .++|+++|+||+|+...+.+. .++..+....
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~ 181 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGY 181 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhccc
Confidence 1111 112589999999999864422 2345555533 578999999999986533321 1222223333
Q ss_pred -hCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 183 -WGVKFVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 183 -~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
.+.+++++||++|.|++++|++|.+.+....
T Consensus 182 ~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 182 AGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp CSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred CCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 4567999999999999999999998876543
No 131
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.82 E-value=1.7e-20 Score=164.51 Aligned_cols=113 Identities=9% Similarity=0.046 Sum_probs=92.7
Q ss_pred EEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCC----------CHHhHHHHHHHHHHHHhhhCCCCCcEE
Q psy5810 90 IVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVI----------ERKTFKKAEDMLKTLWDSKYIGEKAVI 157 (250)
Q Consensus 90 i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~----------~~~Sf~~~~~~~~~i~~~~~~~~~pii 157 (250)
+++|||+||+ +.+|..||+ +++++|+|||++ +..+|+++..|+..+.......++|++
T Consensus 185 l~iwDtaGQe~~r~~~~~y~~----------~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~pii 254 (354)
T 2xtz_A 185 YRLFDVGGQRNERRKWIHLFE----------GVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFM 254 (354)
T ss_dssp EEEEEECCSTTGGGGTGGGCT----------TEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEE
T ss_pred eEEEECCCchhhhHHHHHHhC----------CCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEE
Confidence 6789999997 789999999 999999999998 788999999999999765445789999
Q ss_pred EEeeCCCccCCCc--c-------------------CHHHHHHHHHH----------------hCCeEEEEecCCCCCHHH
Q psy5810 158 LVANKADLERRRQ--V-------------------THSDGKKLAYA----------------WGVKFVETSVGLVYKTDE 200 (250)
Q Consensus 158 lv~nK~Dl~~~~~--v-------------------~~~~~~~~~~~----------------~~~~~~evSa~~~~~I~~ 200 (250)
|||||+|+.+++. + +.+++.+++.. ..+.+++|||+++.||.+
T Consensus 255 LvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~ 334 (354)
T 2xtz_A 255 LFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKK 334 (354)
T ss_dssp EEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHH
T ss_pred EEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHH
Confidence 9999999853221 1 25677777543 123468999999999999
Q ss_pred HHHHHHHHHHhh
Q psy5810 201 LLVGIARQAGLN 212 (250)
Q Consensus 201 lf~~l~~~i~~~ 212 (250)
+|.++.+.+.+.
T Consensus 335 vF~~v~~~I~~~ 346 (354)
T 2xtz_A 335 TFKLVDETLRRR 346 (354)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999888654
No 132
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=2.3e-20 Score=160.59 Aligned_cols=153 Identities=14% Similarity=0.068 Sum_probs=99.0
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcccccccc-ccccCc-----------eeEEEEEeCCCCccccCC--Ccccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-QTYHPD-----------VFFIVYSDTNHTQRCLTP--MPFCSQVEN 113 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-~~~~~~-----------~~~i~i~Dt~g~~~~~~~--~~~~~~~~~ 113 (250)
.++..+|+|+|.+|||||||+| ++++...... ...+.+ -..+.+|||+|....... .++... .
T Consensus 4 ~~~~g~V~ivG~~nvGKSTLln-~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~--~ 80 (301)
T 1wf3_A 4 KTYSGFVAIVGKPNVGKSTLLN-NLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQE--V 80 (301)
T ss_dssp CCEEEEEEEECSTTSSHHHHHH-HHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHH--H
T ss_pred CccCCEEEEECCCCCCHHHHHH-HHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHH--H
Confidence 3566789999999999999999 7887421111 111111 116789999998642110 001100 1
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHH-HHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh-C-CeEEEE
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDML-KTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW-G-VKFVET 190 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~-~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~ev 190 (250)
...++++|++++|+|++++.+.. ..|+ ..+.+. ..+.|+++|+||+|+.+... +..+.++.+ + .+++++
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~--~~~~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~i 152 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPE--DELVARALKPL--VGKVPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRML 152 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG--TTTSCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEEC
T ss_pred HHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh--cCCCCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEE
Confidence 11223899999999999875544 3454 444332 24799999999999865322 022333332 3 468999
Q ss_pred ecCCCCCHHHHHHHHHHHHHh
Q psy5810 191 SVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~ 211 (250)
||++|.|++++|+.+.+.+..
T Consensus 153 SA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 153 SALDERQVAELKADLLALMPE 173 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCCB
T ss_pred eCCCCCCHHHHHHHHHHhccc
Confidence 999999999999999987643
No 133
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.81 E-value=1e-20 Score=165.34 Aligned_cols=148 Identities=18% Similarity=0.086 Sum_probs=110.7
Q ss_pred EEEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCcc------ccCCCccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQR------CLTPMPFCSQVENF 114 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~------~~~~~~~~~~~~~~ 114 (250)
+|+|+|.+|||||||++ ++++.... ...|..+++. .+.+|||+|... .+...+++ .
T Consensus 160 ~V~lvG~~nvGKSTLln-~L~~~~~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~----~- 233 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLS-VVSSAKPKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLR----H- 233 (342)
T ss_dssp CEEEESSTTSSHHHHHH-HSEEECCEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHH----H-
T ss_pred eeeeeCCCCCCHHHHHH-HHHcCCCccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHH----H-
Confidence 38899999999999998 78774211 1234444432 578999999642 22223322 1
Q ss_pred cccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEE
Q psy5810 115 VQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFV 188 (250)
Q Consensus 115 ~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~ 188 (250)
+..++++|+|+|+++ +.+++++..|+.++..+.. ..+.|+++|+||+|+... .+...++++.++ .+++
T Consensus 234 --i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~ 307 (342)
T 1lnz_A 234 --IERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVF 307 (342)
T ss_dssp --HHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBC
T ss_pred --HHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEE
Confidence 114899999999999 7899999999999976532 257999999999998642 244666777776 6899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
++||+++.|++++|.+|.+.+.+.
T Consensus 308 ~iSA~tg~gi~eL~~~l~~~l~~~ 331 (342)
T 1lnz_A 308 PISAVTREGLRELLFEVANQLENT 331 (342)
T ss_dssp CCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred EEECCCCcCHHHHHHHHHHHHhhC
Confidence 999999999999999999887654
No 134
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.81 E-value=5.5e-20 Score=161.80 Aligned_cols=115 Identities=13% Similarity=0.071 Sum_probs=92.4
Q ss_pred EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCC----------HHhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810 89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE----------RKTFKKAEDMLKTLWDSKYIGEKAV 156 (250)
Q Consensus 89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~----------~~Sf~~~~~~~~~i~~~~~~~~~pi 156 (250)
.+.+|||+||+ +.+|..+|+ +++++|+|||+++ ..+|++...|+..+.......++|+
T Consensus 202 ~l~i~Dt~Gq~~~r~~w~~~f~----------~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 202 PFKMVDVGGQRSERKRWFECFD----------SVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEEEEECC-------CTTSCT----------TCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEE
T ss_pred EEEEEeccchhhhhhhHHHHhC----------CCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCE
Confidence 46789999996 788999999 9999999999999 7899999999999976544568999
Q ss_pred EEEeeCCCccCCC----------------ccCHHHHHHHHH-----------HhCCeEEEEecCCCCCHHHHHHHHHHHH
Q psy5810 157 ILVANKADLERRR----------------QVTHSDGKKLAY-----------AWGVKFVETSVGLVYKTDELLVGIARQA 209 (250)
Q Consensus 157 ilv~nK~Dl~~~~----------------~v~~~~~~~~~~-----------~~~~~~~evSa~~~~~I~~lf~~l~~~i 209 (250)
||++||+|+.+++ .++.+++..++. ..++.+++|||+++.||.++|.++.+.+
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i 351 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI 351 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHH
Confidence 9999999985322 367888888762 3457789999999999999999999988
Q ss_pred Hhhh
Q psy5810 210 GLNK 213 (250)
Q Consensus 210 ~~~~ 213 (250)
.+..
T Consensus 352 ~~~~ 355 (362)
T 1zcb_A 352 LHDN 355 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
No 135
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.81 E-value=6.5e-20 Score=166.90 Aligned_cols=149 Identities=13% Similarity=0.101 Sum_probs=100.3
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccccccccc-Cce-----------eEEEEEeCCCCc-cccCCCccccccccccccC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYH-PDV-----------FFIVYSDTNHTQ-RCLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~-~~~-----------~~i~i~Dt~g~~-~~~~~~~~~~~~~~~~~~~ 118 (250)
++|+|+|.+|||||||+| ++++........+. .+. ..+.+|||+|+. .................++
T Consensus 244 ~kV~ivG~pnvGKSSLln-~L~~~~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~ 322 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLN-RLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQEIE 322 (482)
T ss_dssp EEEEEECCHHHHTCHHHH-HHHHHTBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHH
T ss_pred CEEEEECcCCCcHHHHHH-HHHCCCCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHHHHHHHHHHhh
Confidence 789999999999999999 78774222222221 111 167899999986 3211100000000011112
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
.+|++|+|+|++++.++++.. +++.+ .+.|+++|+||+|+.+. ++.++..+++. .+++++++||++|.||
T Consensus 323 ~aD~vl~VvD~s~~~s~~~~~-il~~l------~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi 392 (482)
T 1xzp_A 323 KADIVLFVLDASSPLDEEDRK-ILERI------KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGL 392 (482)
T ss_dssp HCSEEEEEEETTSCCCHHHHH-HHHHH------TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCH
T ss_pred cccEEEEEecCCCCCCHHHHH-HHHHh------cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCH
Confidence 799999999999998887643 33332 37899999999999652 44555555432 3468999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy5810 199 DELLVGIARQAGL 211 (250)
Q Consensus 199 ~~lf~~l~~~i~~ 211 (250)
+++|++|.+.+..
T Consensus 393 ~eL~~~l~~~~~~ 405 (482)
T 1xzp_A 393 EKLEESIYRETQE 405 (482)
T ss_dssp HHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987653
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.81 E-value=5.5e-20 Score=166.05 Aligned_cols=174 Identities=15% Similarity=0.089 Sum_probs=106.0
Q ss_pred EEEEEcCCCCchhhhchhhhcccccc-ccccccCcee-----------EEEEEeCCCCccccCCCccccccc-cccccCC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVE-NFVQTYH 119 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~-~~~~~~~ 119 (250)
+|+|+|++|||||||+| +|++.... ..++.+.+.. .+.+|||+|++......+...+.+ ....+++
T Consensus 3 ~v~ivG~pnvGKStL~n-rl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ 81 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFN-KLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIRE 81 (439)
T ss_dssp EEEEECCTTSSHHHHHH-HHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHH-HHhCCCCceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHHHHHHHHHHHHh
Confidence 69999999999999999 88874322 2223232221 678999999873211111110111 0111238
Q ss_pred CcEEEEEEeCCCHHhHHH--HHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH-HHHHHHhCC-eEEEEecCCC
Q psy5810 120 PDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG-KKLAYAWGV-KFVETSVGLV 195 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~-~~~~~~~~~-~~~evSa~~~ 195 (250)
||++++|+|.++..++.+ +..|+.. .++|+++|+||+|+... . ..+. .++. .+++ +++++||++|
T Consensus 82 ad~il~V~D~~~~~~~~d~~i~~~l~~-------~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g 150 (439)
T 1mky_A 82 ADLVLFVVDGKRGITKEDESLADFLRK-------STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHN 150 (439)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHH-------HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH-------cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCC
Confidence 999999999988655443 3334332 36899999999998531 1 1223 3443 4576 6899999999
Q ss_pred CCHHHHHHHHHHHHHhhhhh-hh---H--------HHHHhhhhhhhhhhhhccCC
Q psy5810 196 YKTDELLVGIARQAGLNKKR-NK---L--------LAKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~~~~-~~---~--------~~~~~~~~~~~~~~~~~~~~ 238 (250)
.|+.++|+++...+...... .. . -.......+++++.+.+...
T Consensus 151 ~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG~~gvGKSTLln~l~g~~~ 205 (439)
T 1mky_A 151 INLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVGRPNVGKSTLFNAILNKER 205 (439)
T ss_dssp BSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred CCHHHHHHHHHHhcccccccchhccccccCceEEEECCCCCCHHHHHHHHhCCcc
Confidence 99999999999888643211 00 0 01112466778888877653
No 137
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.80 E-value=5.1e-20 Score=164.99 Aligned_cols=150 Identities=13% Similarity=0.052 Sum_probs=103.4
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccccc-ccccccCce------------eEEEEEeCCCCcc--ccCCCcccccccc
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDV------------FFIVYSDTNHTQR--CLTPMPFCSQVEN 113 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~------------~~i~i~Dt~g~~~--~~~~~~~~~~~~~ 113 (250)
...++|+|+|..|+|||||++ ++++.... .....+.+. ..+.+|||+|+.. .+..........
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin-~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~~- 109 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMN-ALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKARR- 109 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTT-SSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHHH-
T ss_pred CCCEEEEEECCCCCCHHHHHH-HHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHHH-
Confidence 456789999999999999998 78874211 111111111 1688999999863 222221111111
Q ss_pred ccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecC
Q psy5810 114 FVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVG 193 (250)
Q Consensus 114 ~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~ 193 (250)
.++++|++|+|+|++..+. ...|+..+.+. ++|+++|+||+|+...+.. +.+.++++.++++++++||+
T Consensus 110 --~l~~aD~vllVvD~~~~~~---~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAk 178 (423)
T 3qq5_A 110 --VFYRADCGILVTDSAPTPY---EDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSAL 178 (423)
T ss_dssp --HHTSCSEEEEECSSSCCHH---HHHHHHHHHHT----TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSC
T ss_pred --HHhcCCEEEEEEeCCChHH---HHHHHHHHHhc----CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECC
Confidence 1127999999999944333 35677766543 7899999999999765544 56677777888999999999
Q ss_pred CCCCHHHHHHHHHHHHHh
Q psy5810 194 LVYKTDELLVGIARQAGL 211 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~ 211 (250)
+|.|++++|+++.+.+.+
T Consensus 179 tg~gI~eL~~~L~~~l~~ 196 (423)
T 3qq5_A 179 QKKGFDDIGKTISEILPG 196 (423)
T ss_dssp CTTSTTTHHHHHHHHSCC
T ss_pred CCCCHHHHHHHHHHhhhh
Confidence 999999999999998843
No 138
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.80 E-value=8.2e-20 Score=158.85 Aligned_cols=113 Identities=12% Similarity=0.074 Sum_probs=94.3
Q ss_pred EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCC----------CHHhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810 89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVI----------ERKTFKKAEDMLKTLWDSKYIGEKAV 156 (250)
Q Consensus 89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~----------~~~Sf~~~~~~~~~i~~~~~~~~~pi 156 (250)
.+++|||+||+ +.+|..||+ +++++|+|||++ +..+|++...|+..+.......++|+
T Consensus 162 ~l~iwDtaGQe~~R~~w~~yy~----------~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~pi 231 (340)
T 4fid_A 162 PFHLIDVGGQRSERKXWVSFFS----------DVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVK 231 (340)
T ss_dssp EEEEEECCSCHHHHHHHHTTSC----------SCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEE
T ss_pred eeccccCCCcccccccHHHHhc----------cCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeE
Confidence 56899999997 789999999 999999999999 78899999999999987665678999
Q ss_pred EEEeeCCCccCCC---------------ccCHHHHHHHHHH-h--------------------------CCeEEEEecCC
Q psy5810 157 ILVANKADLERRR---------------QVTHSDGKKLAYA-W--------------------------GVKFVETSVGL 194 (250)
Q Consensus 157 ilv~nK~Dl~~~~---------------~v~~~~~~~~~~~-~--------------------------~~~~~evSa~~ 194 (250)
+|+|||+|+.+++ ..+.+++.+++.. + ++.++++||++
T Consensus 232 iLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~d 311 (340)
T 4fid_A 232 LIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATD 311 (340)
T ss_dssp EEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTC
T ss_pred EEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeC
Confidence 9999999984321 1246677666533 2 35688999999
Q ss_pred CCCHHHHHHHHHHHHHh
Q psy5810 195 VYKTDELLVGIARQAGL 211 (250)
Q Consensus 195 ~~~I~~lf~~l~~~i~~ 211 (250)
+.||..+|..+.+.+++
T Consensus 312 t~nv~~vF~~v~~~Il~ 328 (340)
T 4fid_A 312 GSNIKRVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 99999999999999886
No 139
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.79 E-value=1.8e-19 Score=163.30 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=94.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCce------------eEEEEEeCCCCccc--cCCCcccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDV------------FFIVYSDTNHTQRC--LTPMPFCSQVENFV 115 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~------------~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~ 115 (250)
..+||+|+|.+|||||||+| +|++....+...+..+. ..+.+|||+|.... ..... .......
T Consensus 223 ~~~kV~ivG~~nvGKSSLln-~L~~~~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~--gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLN-AWSQSDRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKI--GVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHH-HHHHHHBSCCSCCTTCCHHHHHHEEEETTEEEEECC----------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHH-HHhCCCcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHH--HHHHHhh
Confidence 45789999999999999999 78774222222222111 16789999997421 11110 0000111
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLV 195 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~ 195 (250)
.++.+|++++|+|.+++.++.. ..|+..+ .+.|+++|+||+|+.+...+. ....+. .+.+++++||++|
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg 368 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQK 368 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTT
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCC
Confidence 1228999999999999877655 4566655 247999999999996544432 111111 3567999999999
Q ss_pred CCHHHHHHHHHHHHHhhh
Q psy5810 196 YKTDELLVGIARQAGLNK 213 (250)
Q Consensus 196 ~~I~~lf~~l~~~i~~~~ 213 (250)
.|++++|+++.+.+....
T Consensus 369 ~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 369 QGIDSLETAILEIVQTGK 386 (462)
T ss_dssp BSHHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHHHHHhccC
Confidence 999999999999886543
No 140
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.76 E-value=4.1e-18 Score=153.80 Aligned_cols=156 Identities=17% Similarity=0.087 Sum_probs=99.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccc-ccc----Cce-------eEEEEEeCCCCccccCC-----Cccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-TYH----PDV-------FFIVYSDTNHTQRCLTP-----MPFCSQVE 112 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-~~~----~~~-------~~i~i~Dt~g~~~~~~~-----~~~~~~~~ 112 (250)
..+||+|+|++|||||||+| ++++....... ..+ +.. ..+.+|||+|+.+.... ..+. ...
T Consensus 179 ~~~kvaivG~~gvGKSTLln-~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~-~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFN-AILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYS-NYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHH-HHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSC-CHH
T ss_pred cCceEEEECCCCCCHHHHHH-HHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHH-HHH
Confidence 45889999999999999998 78774211111 111 111 16789999998522110 1111 111
Q ss_pred cccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHH-HHHH----hCCeE
Q psy5810 113 NFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK-LAYA----WGVKF 187 (250)
Q Consensus 113 ~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~-~~~~----~~~~~ 187 (250)
....++.+|++++|+|.++..++++. .+...+.. .+.|+++|+||+|+.+.+..+.++..+ +... .+.++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcE
Confidence 11122268999999999987776553 23332322 578999999999986644444444432 2232 35789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 188 VETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
+++||++|.|++++|+.+.+.+...
T Consensus 332 ~~~SA~~g~gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 332 IFTSADKGWNIDRMIDAMNLAYASY 356 (439)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999876554
No 141
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.76 E-value=1.5e-19 Score=163.07 Aligned_cols=174 Identities=14% Similarity=0.027 Sum_probs=99.1
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccc-ccccccCcee-----------EEEEEeCCCCccccCCC--cccccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDVF-----------FIVYSDTNHTQRCLTPM--PFCSQVENFVQT 117 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~~-----------~i~i~Dt~g~~~~~~~~--~~~~~~~~~~~~ 117 (250)
.+|+|+|++|||||||+| ++++.... ..++.+.+.. .+.+|||+|++...... .+......+ +
T Consensus 4 ~~V~ivG~~nvGKStL~n-~l~~~~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~--~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFN-RIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIA--M 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHH-HHEEEECC-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHH--H
T ss_pred CEEEEECCCCCCHHHHHH-HHhCCCceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHH--H
Confidence 469999999999999999 88874221 2333343322 57799999986211110 011111111 1
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEEEEecCCCC
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFVETSVGLVY 196 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~evSa~~~~ 196 (250)
++||++|+|+|.+++.++.+ .|+.++.+ ..+.|++||+||+|+...+. +..++. ..++ +++++||++|.
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~---~~~~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~ 150 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY---RTKKPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGL 150 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT---TCCSCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTB
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH---HcCCCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCC
Confidence 27999999999998777654 34444332 25789999999999854221 111222 3455 68999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhHH--------HHHhhhhhhhhhhhhccCC
Q psy5810 197 KTDELLVGIARQAGLNKKRNKLL--------AKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 238 (250)
|+.++++++.+.+.+........ .....+.+++++++.+...
T Consensus 151 gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nvGKSSLin~l~~~~~ 200 (436)
T 2hjg_A 151 GLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEER 200 (436)
T ss_dssp THHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred ChHHHHHHHHHhcCccccccccccCcEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 99999999998776432110000 0011356778888877654
No 142
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.76 E-value=3.9e-18 Score=146.71 Aligned_cols=146 Identities=14% Similarity=0.127 Sum_probs=100.3
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccc-cccccCce-----------eEEEEEeCCCCc-cc----------cCCC
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENF-VQTYHPDV-----------FFIVYSDTNHTQ-RC----------LTPM 105 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~-~~~~~~~~-----------~~i~i~Dt~g~~-~~----------~~~~ 105 (250)
++..+|+|+|.+|||||||+| ++++..... ....+.+. ..+.+|||+|.+ .. ....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln-~L~g~~~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLN-KLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHH-HHHTCSEEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred ccCCEEEEECCCCCCHHHHHH-HHHCCCccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 455679999999999999999 788742111 11111111 157789999986 21 1222
Q ss_pred ccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC
Q psy5810 106 PFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV 185 (250)
Q Consensus 106 ~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~ 185 (250)
++. .+|++++|+|.++ +.....|+.+... ..+.|+++++||+|+...+....+....+++.+++
T Consensus 85 ~l~----------~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~ 148 (301)
T 1ega_A 85 SIG----------DVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNF 148 (301)
T ss_dssp CCC----------CEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCC
T ss_pred HHh----------cCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCc
Confidence 333 8999999999987 3333445544332 25789999999999865222233445556666676
Q ss_pred -eEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 186 -KFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 186 -~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
.++++||+++.|+.++++.+...+..
T Consensus 149 ~~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 149 LDIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp SEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 69999999999999999999976654
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.76 E-value=6.8e-18 Score=148.70 Aligned_cols=157 Identities=15% Similarity=0.108 Sum_probs=103.0
Q ss_pred EE-EEEEcCCCCchhhhchhhhcccccc----ccccccCcee-------EEEEEeCCCCccccCCCc---cccccccccc
Q psy5810 52 VF-FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF-------FIVYSDTNHTQRCLTPMP---FCSQVENFVQ 116 (250)
Q Consensus 52 ~k-i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~-------~i~i~Dt~g~~~~~~~~~---~~~~~~~~~~ 116 (250)
++ |+|+|.+|||||||+| ++++.... ...|.+++.. .+.+|||+|....+.... ++...+.
T Consensus 179 ~~~V~lvG~~naGKSTLln-~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f~~tl~~--- 254 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFN-SLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAFFVTLSE--- 254 (364)
T ss_dssp CCEEEEECBTTSSHHHHHH-HHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHHHHHHHG---
T ss_pred CcEEEEECCCCCCHHHHHH-HHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHHHHHHHH---
Confidence 44 9999999999999998 78874221 1223233322 577899999743322211 2222222
Q ss_pred cCCCcEEEEEEeCCCHH--hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc-CHHHHHHHHHHh---CCeEEEE
Q psy5810 117 TYHPDVFVIVYSVIERK--TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV-THSDGKKLAYAW---GVKFVET 190 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~--Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v-~~~~~~~~~~~~---~~~~~ev 190 (250)
+..+|++++|+|++++. +++.+..|...+.. ....+.|+++|+||+|+.+.... ..+.+..++..+ +.+++++
T Consensus 255 ~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 23799999999999987 66666666555433 24467899999999998643210 012233344555 2368999
Q ss_pred ecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 191 SVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 191 Sa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
||+++.|++++++++.+.+....
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHC
T ss_pred ECCCCcCHHHHHHHHHHHhcccC
Confidence 99999999999999998776543
No 144
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.75 E-value=8.1e-19 Score=140.25 Aligned_cols=113 Identities=10% Similarity=0.095 Sum_probs=79.3
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccc---cccCcee------EEEEEeCCCCcc--ccCCCccccccccccccC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ---TYHPDVF------FIVYSDTNHTQR--CLTPMPFCSQVENFVQTY 118 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~---~~~~~~~------~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~ 118 (250)
..++|+++|++|||||||++ ++.+. .+.. ++.++.. .+.+|||+|++. ..+..++.... .
T Consensus 47 ~~~~i~vvG~~g~GKSsll~-~l~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~------~ 117 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLT-LLTTD--SVRPTVVSQEPLSAADYDGSGVTLVDFPGHVKLRYKLSDYLKTRA------K 117 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHH-HHHHS--SCC------------CCCCTTCSEEEETTCCBSSCCHHHHHHHHG------G
T ss_pred CCCEEEEECCCCCCHHHHHH-HHhcC--CCCcccccCCCceeeeecCCeEEEEECCCCchHHHHHHHHHHhhc------c
Confidence 44679999999999999998 78773 2221 2222222 567899999863 33333333100 1
Q ss_pred CCcEEEEEEeCC-CHHhHHHHHHHHHHHHhhh---CCCCCcEEEEeeCCCccCCCcc
Q psy5810 119 HPDVFVIVYSVI-ERKTFKKAEDMLKTLWDSK---YIGEKAVILVANKADLERRRQV 171 (250)
Q Consensus 119 ~ad~iilV~D~~-~~~Sf~~~~~~~~~i~~~~---~~~~~piilv~nK~Dl~~~~~v 171 (250)
.+|++|+|||++ ++.+|+.+..|+..+.... ...++|+++|+||+|+.+.+.+
T Consensus 118 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~ 174 (193)
T 2ged_A 118 FVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPP 174 (193)
T ss_dssp GEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCH
T ss_pred cCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCCH
Confidence 389999999999 8999999999988886543 2358999999999999765543
No 145
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.75 E-value=3e-18 Score=153.12 Aligned_cols=148 Identities=16% Similarity=0.112 Sum_probs=101.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc-cc---c-cccc---------------------cC-----ceeEEEEEeCCCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV-EN---F-VQTY---------------------HP-----DVFFIVYSDTNHT 98 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~-~~---~-~~~~---------------------~~-----~~~~i~i~Dt~g~ 98 (250)
..++|+++|.+|+|||||++ ++++.. .. + ..+. .. ....+.+|||+|+
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~-~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQ-AITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHH-HHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCcEEEEECCCCCCHHHHHH-HHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 44679999999999999998 787620 00 0 0000 00 0137889999997
Q ss_pred cccc--CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHH
Q psy5810 99 QRCL--TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV--THS 174 (250)
Q Consensus 99 ~~~~--~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~ 174 (250)
+... ...++. .+|++++|+|.++..++....+|+..+... ...|+++|+||+|+.+.... ..+
T Consensus 86 ~~~~~~~~~~~~----------~~D~~ilVvda~~~~~~~qt~~~~~~~~~~---~~~~iivviNK~Dl~~~~~~~~~~~ 152 (403)
T 3sjy_A 86 EVLMATMLSGAA----------LMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYR 152 (403)
T ss_dssp GGGHHHHHHHHT----------TCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHH
T ss_pred HHHHHHHHHHHh----------hCCEEEEEEECCCCCCcHHHHHHHHHHHHc---CCCCEEEEEECccccchHHHHHHHH
Confidence 6321 222233 799999999999987777888887766443 23589999999998642211 112
Q ss_pred HHHHHHHHh---CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 175 DGKKLAYAW---GVKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 175 ~~~~~~~~~---~~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
+..++.... +++++++||++|.|++++++.|.+.+..
T Consensus 153 ~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 153 QIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCC
Confidence 222333222 5689999999999999999999986643
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.73 E-value=1.1e-17 Score=140.41 Aligned_cols=159 Identities=15% Similarity=0.112 Sum_probs=96.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccCc-------e-------eEEEEEeCCCCccccCCC--cccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPD-------V-------FFIVYSDTNHTQRCLTPM--PFCSQVEN 113 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~-------~-------~~i~i~Dt~g~~~~~~~~--~~~~~~~~ 113 (250)
..++|+|+|.+|||||||++ ++++.. .+...+.++ . ..+.+|||+|........ +.......
T Consensus 21 ~~~~I~lvG~~g~GKStl~n-~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGN-SILRKQ-AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHH-HHHTSC-CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH-HHhCCC-CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 45779999999999999999 787642 122222211 1 168899999986322111 00000000
Q ss_pred -ccccCCCcEEEEEEeCCCHHhH-HHHHHHHHHHHhhhCCCCCcEEEEee-CCCccCCCccCH-------HHHHHHHHHh
Q psy5810 114 -FVQTYHPDVFVIVYSVIERKTF-KKAEDMLKTLWDSKYIGEKAVILVAN-KADLERRRQVTH-------SDGKKLAYAW 183 (250)
Q Consensus 114 -~~~~~~ad~iilV~D~~~~~Sf-~~~~~~~~~i~~~~~~~~~piilv~n-K~Dl~~~~~v~~-------~~~~~~~~~~ 183 (250)
...++++|++|+|+|+++.... ..+..|+.++... ....|.++|.| |+|+... .+.. +++..++...
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~--~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~ 175 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE--DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAAC 175 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG--GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHT
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc--hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHh
Confidence 0122389999999999872222 2233444443211 11345555555 9999743 2322 3355566666
Q ss_pred CCe---E--EEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 184 GVK---F--VETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 184 ~~~---~--~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
+.. + +++||+++.|+.++|.++.+.+....
T Consensus 176 ~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~~ 210 (260)
T 2xtp_A 176 GGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEKN 210 (260)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEecCcccccccHHHHHHHHHHHHHHHHhCC
Confidence 543 2 78999999999999999999887643
No 147
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.73 E-value=7.5e-18 Score=139.86 Aligned_cols=161 Identities=11% Similarity=0.038 Sum_probs=93.3
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccccc--cCce-----------eEEEEEeCCCCccccCC-C-ccccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY--HPDV-----------FFIVYSDTNHTQRCLTP-M-PFCSQVE 112 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~--~~~~-----------~~i~i~Dt~g~~~~~~~-~-~~~~~~~ 112 (250)
....++|+|+|.+|||||||++ ++++......... +.+. ..+.+|||+|....... . .......
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin-~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGN-SILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHH-HHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHH-HHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 3456889999999999999999 7887422111100 1111 16789999995421100 0 0000000
Q ss_pred cc-cccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccC------HHHHHHHHHHhC
Q psy5810 113 NF-VQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVT------HSDGKKLAYAWG 184 (250)
Q Consensus 113 ~~-~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~------~~~~~~~~~~~~ 184 (250)
.+ ...+++|++|+|+|+++...- ...|+..+.+... ....|+++|+||+|+...+.+. .+....+++.++
T Consensus 105 ~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~ 182 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFG 182 (239)
T ss_dssp HHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHS
T ss_pred HHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcC
Confidence 00 011278999999999764331 1233333322111 1246999999999986544443 245778888899
Q ss_pred CeEEEEecCCC-----CCHHHHHHHHHHHHHh
Q psy5810 185 VKFVETSVGLV-----YKTDELLVGIARQAGL 211 (250)
Q Consensus 185 ~~~~evSa~~~-----~~I~~lf~~l~~~i~~ 211 (250)
..|+.+++..+ .++.++|..+...+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 183 DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888877754 6889999888776654
No 148
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.71 E-value=2.2e-17 Score=150.62 Aligned_cols=146 Identities=15% Similarity=0.084 Sum_probs=99.1
Q ss_pred cccccEEEEEEEcCCCCchhhhchhhhcccc-----cccc--ccccCce-----------eEEEEEeCCCCccc--cCCC
Q psy5810 46 VQTYHHVFFIVHSDTNHTQRCLTSMPFCSQV-----ENFV--QTYHPDV-----------FFIVYSDTNHTQRC--LTPM 105 (250)
Q Consensus 46 ~~~~~~~ki~iiG~~~vGKSsLi~~~~~~~~-----~~~~--~~~~~~~-----------~~i~i~Dt~g~~~~--~~~~ 105 (250)
....+.++|+++|..++|||||++ ++.+.. +.+. ...+.++ ..+.+|||+|++.. ....
T Consensus 14 ~~~m~~~~I~iiG~~d~GKSTLi~-~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~ 92 (482)
T 1wb1_A 14 HMDFKNINLGIFGHIDHGKTTLSK-VLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVS 92 (482)
T ss_dssp CCCCEEEEEEEEECTTSSHHHHHH-HHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHH
T ss_pred hhcCCCCEEEEECCCCChHHHHHH-HHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHH
Confidence 334567889999999999999998 787642 0011 1111121 26889999998632 1122
Q ss_pred ccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCC--ccCHHHHHHHH
Q psy5810 106 PFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRR--QVTHSDGKKLA 180 (250)
Q Consensus 106 ~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~v~~~~~~~~~ 180 (250)
++. .+|++|+|+|.++ +++++.+. .+.. .++|+++|+||+|+.+.. ....++..+++
T Consensus 93 ~~~----------~aD~~ilVvda~~g~~~qt~e~l~----~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l 154 (482)
T 1wb1_A 93 AAD----------IIDLALIVVDAKEGPKTQTGEHML----ILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSIL 154 (482)
T ss_dssp HTT----------SCCEEEEEEETTTCSCHHHHHHHH----HHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHH
T ss_pred HHh----------hCCEEEEEEecCCCccHHHHHHHH----HHHH----cCCCEEEEEECCCcccchhHHHHHHHHHHHH
Confidence 233 7999999999998 56665543 2211 368889999999986421 12234455566
Q ss_pred HHh----CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 181 YAW----GVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 181 ~~~----~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+.. +++++++||++|.|+.+++++|.+.+.
T Consensus 155 ~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 155 QSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred hhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 555 578999999999999999999998775
No 149
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.71 E-value=8.9e-18 Score=153.33 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=85.9
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccc-------------------------------cccCce----------
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------------------------------TYHPDV---------- 87 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------------------------------~~~~~~---------- 87 (250)
...+||+++|.+|+|||||++ +|+.....+.. ..|.++
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~-~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~ 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMG-RLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHH-HHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS
T ss_pred CCceEEEEECCCCCCHHHHHH-HHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC
Confidence 356889999999999999998 77653111111 012222
Q ss_pred -eEEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHH-----HHHHHHHHhhhCCCCCcEEEE
Q psy5810 88 -FFIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKA-----EDMLKTLWDSKYIGEKAVILV 159 (250)
Q Consensus 88 -~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~-----~~~~~~i~~~~~~~~~piilv 159 (250)
..+.+|||+|+++. ....++. .+|++|+|+|+++..++..+ ..+...+... ....|+|+|
T Consensus 110 ~~~~~iiDTPG~~~f~~~~~~~~~----------~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~--~~~~~iIvv 177 (483)
T 3p26_A 110 RANFTIVDAPGHRDFVPNAIMGIS----------QADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS--LGIHNLIIA 177 (483)
T ss_dssp SCEEEEECCCCCGGGHHHHHHHHT----------TCSEEEEEEECCC------CCCCHHHHHHHHHHHH--TTCCCEEEE
T ss_pred CceEEEEECCCcHHHHHHHHHhhh----------hCCEEEEEEECCCCccccccchhhhHHHHHHHHHH--cCCCcEEEE
Confidence 16889999998632 2222333 89999999999997654331 1111122221 123469999
Q ss_pred eeCCCccCCCccCHHHHHH----HHHHh-----CCeEEEEecCCCCCHHHH
Q psy5810 160 ANKADLERRRQVTHSDGKK----LAYAW-----GVKFVETSVGLVYKTDEL 201 (250)
Q Consensus 160 ~nK~Dl~~~~~v~~~~~~~----~~~~~-----~~~~~evSa~~~~~I~~l 201 (250)
+||+|+.+.+....++..+ +.+.. +++++++||++|.|+.++
T Consensus 178 iNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el 228 (483)
T 3p26_A 178 MNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 228 (483)
T ss_dssp EECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred EECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence 9999997644333333333 33333 357999999999999753
No 150
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.70 E-value=1.7e-18 Score=147.96 Aligned_cols=115 Identities=14% Similarity=0.099 Sum_probs=71.9
Q ss_pred eEEEEEeCCCCcccc----CCC---ccccccccccccCCCcEEE-EEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEE
Q psy5810 88 FFIVYSDTNHTQRCL----TPM---PFCSQVENFVQTYHPDVFV-IVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV 159 (250)
Q Consensus 88 ~~i~i~Dt~g~~~~~----~~~---~~~~~~~~~~~~~~ad~ii-lV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv 159 (250)
..+.+|||||..+.- ... .+......+.. .++.++ +|+|.++..+......|+..+. ..+.|+++|
T Consensus 125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~il~v~d~~~~~~~~~~~~~~~~~~----~~~~~~i~V 198 (299)
T 2aka_B 125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSDALKIAKEVD----PQGQRTIGV 198 (299)
T ss_dssp CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHT--STTEEEEEEEESSSCGGGCHHHHHHHHHC----TTCSSEEEE
T ss_pred CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHc--CCCeEEEEEecCCcchhhhHHHHHHHHhC----CCCCeEEEE
Confidence 468899999975321 111 22222222222 667665 7999988665555445655552 357899999
Q ss_pred eeCCCccCCCccCHHHHHHHHHH--hC-CeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 160 ANKADLERRRQVTHSDGKKLAYA--WG-VKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 160 ~nK~Dl~~~~~v~~~~~~~~~~~--~~-~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
+||+|+.+......+........ .+ .+++++||++|.|++++|+++.+.
T Consensus 199 ~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 199 ITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp EECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred EEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 99999865443222222210001 13 257899999999999999999874
No 151
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.70 E-value=2e-16 Score=147.22 Aligned_cols=143 Identities=15% Similarity=0.052 Sum_probs=95.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccc------cccccccCce-----------------------eEEEEEeCCCCc-
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE------NFVQTYHPDV-----------------------FFIVYSDTNHTQ- 99 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~------~~~~~~~~~~-----------------------~~i~i~Dt~g~~- 99 (250)
+..+|+|+|..|+|||||++ ++.+... ....+++.+. ..+.+|||||++
T Consensus 4 r~~~V~IvGh~d~GKTTLl~-~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLD-HIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHH-HHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CCcEEEEECCCCCcHHHHHH-HHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 34579999999999999998 7765311 0111111111 148999999986
Q ss_pred -cccCCCccccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC---
Q psy5810 100 -RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT--- 172 (250)
Q Consensus 100 -~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~--- 172 (250)
..++..++. .+|++|+|+|+++ +++++.+..+ .. .++|+++++||+|+.......
T Consensus 83 F~~~~~r~~~----------~aD~aILVvDa~~Gv~~qT~e~l~~l----~~----~~vPiIVViNKiDl~~~~~~~~~~ 144 (594)
T 1g7s_A 83 FTTLRKRGGA----------LADLAILIVDINEGFKPQTQEALNIL----RM----YRTPFVVAANKIDRIHGWRVHEGR 144 (594)
T ss_dssp CTTSBCSSSB----------SCSEEEEEEETTTCCCHHHHHHHHHH----HH----TTCCEEEEEECGGGSTTCCCCTTC
T ss_pred HHHHHHHHHh----------hCCEEEEEEECCCCccHhHHHHHHHH----HH----cCCeEEEEecccccccccccccCC
Confidence 344444445 7999999999999 7887765422 11 478999999999985421100
Q ss_pred ----------H---H-------HHHHHHHHhC---------------CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 173 ----------H---S-------DGKKLAYAWG---------------VKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 173 ----------~---~-------~~~~~~~~~~---------------~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
. + +......+.+ ++++++||++|.||.++++++...+..
T Consensus 145 ~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~ 218 (594)
T 1g7s_A 145 PFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQ 218 (594)
T ss_dssp CHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccc
Confidence 0 0 1111112222 379999999999999999999987653
No 152
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=3.4e-17 Score=140.76 Aligned_cols=124 Identities=19% Similarity=0.094 Sum_probs=99.1
Q ss_pred hhchhhhcccccccc-ccccCcee-----------EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHH
Q psy5810 66 CLTSMPFCSQVENFV-QTYHPDVF-----------FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK 133 (250)
Q Consensus 66 sLi~~~~~~~~~~~~-~~~~~~~~-----------~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~ 133 (250)
+|+. +|+. +.|. ..+.++++ .+++|||...++.+++.+++ ++|++|+|||++++.
T Consensus 32 sl~~-~~~~--~~f~~~~~~pTiGd~~~~~~~~~~~~~iwD~qer~~~l~~~~~~----------~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 32 ERIL-CKLR--GKFRLQNLKIYVGDRVEYTPDETGSGVIENVLHRKNLLTKPHVA----------NVDQVILVVTVKMPE 98 (301)
T ss_dssp CEEE-EEEC--GGGTTTTCCCCTTCEEEEECCCSSSEEEEEECCCSCEETTTTEE----------SCCEEEEEECSSTTC
T ss_pred cEEE-EEEc--ccccccCCCCCCccEEEEEEcCCCeEEEEEEccccceeeccccc----------cCCEEEEEEeCCCCC
Confidence 6886 7887 5555 44444433 46799994444788888988 999999999999997
Q ss_pred -hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhC--CeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 134 -TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWG--VKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 134 -Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~--~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
+|+.+..|+..+.. .++|++||+||+|+.+.+.+ +++.++++.++ ++++++||++|.||+++|..+...
T Consensus 99 ~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~ge 170 (301)
T 1u0l_A 99 TSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGK 170 (301)
T ss_dssp CCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSS
T ss_pred CCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCC
Confidence 79999999998754 47999999999999754443 55777888777 899999999999999999887653
No 153
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=7.5e-17 Score=144.23 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=92.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccc-ccccc----c--cccCc------------------------------eeEEEE
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFV----Q--TYHPD------------------------------VFFIVY 92 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~----~--~~~~~------------------------------~~~i~i 92 (250)
..++|+++|..++|||||++ ++.+. ...+. . |+... ...+.+
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~-~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTK-ALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHH-HHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHH-HHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45789999999999999998 78742 11111 1 11110 146889
Q ss_pred EeCCCCccccCCCccccccccccccCCCcEEEEEEeCCC----HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 93 SDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE----RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 93 ~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~----~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
|||+|++.... .+.. .+..+|++|+|+|+++ +++++.+..| . .. ...|+++++||+|+.+.
T Consensus 86 iDtPGh~~f~~-~~~~-------~~~~~D~~ilVvda~~g~~~~qt~e~l~~~-~---~l---~~~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 86 VDSPGHETLMA-TMLS-------GASLMDGAILVIAANEPCPQPQTKEHLMAL-E---IL---GIDKIIIVQNKIDLVDE 150 (408)
T ss_dssp EECSSHHHHHH-HHHT-------TCSCCSEEEEEEETTSCSSCHHHHHHHHHH-H---HT---TCCCEEEEEECTTSSCT
T ss_pred EECCCHHHHHH-HHHH-------hHhhCCEEEEEEECCCCCCCchhHHHHHHH-H---Hc---CCCeEEEEEEccCCCCH
Confidence 99999863221 1111 1116899999999984 5666665533 1 11 23589999999998653
Q ss_pred Cc--cCHHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 169 RQ--VTHSDGKKLAYA---WGVKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 169 ~~--v~~~~~~~~~~~---~~~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
.. ...+++.++++. .+++++++||++|.||++++++|.+.+..
T Consensus 151 ~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 151 KQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp TTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 32 234566677665 35789999999999999999999876653
No 154
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.6e-18 Score=152.76 Aligned_cols=157 Identities=11% Similarity=0.055 Sum_probs=83.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccc--------cCcee---------------EEEEEeCCCCc-------
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTY--------HPDVF---------------FIVYSDTNHTQ------- 99 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~--------~~~~~---------------~i~i~Dt~g~~------- 99 (250)
..++|+|+|++|+|||||++ ++.+. ..+...+ .+++. .+.+|||+|+.
T Consensus 36 ~~~~I~vvG~~g~GKSTLln-~L~~~-~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 36 FEFTLMVVGESGLGKSTLIN-SLFLT-DLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp CEECEEECCCTTSCHHHHHH-HHTTC-CC---------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CCEEEEEEcCCCCCHHHHHH-HHhCC-CCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 44779999999999999998 65442 2221111 11211 57899999982
Q ss_pred --cccCC-------Cccccccccc-cccCCCcEEEEEEeCCC-HHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 100 --RCLTP-------MPFCSQVENF-VQTYHPDVFVIVYSVIE-RKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 100 --~~~~~-------~~~~~~~~~~-~~~~~ad~iilV~D~~~-~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
..++. .|++...... ..+.++++-+++|++++ ..++..+. .|+..+ ..++|+|+|+||+|+..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~ 188 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLT 188 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCC
Confidence 12222 2222100000 01113333345566555 45565554 455544 25789999999999876
Q ss_pred CCccCH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHhhhh
Q psy5810 168 RRQVTH--SDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKK 214 (250)
Q Consensus 168 ~~~v~~--~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~~ 214 (250)
.+.+.. +++.++++.++++++++||+++.+ .+.|.++.+.+....+
T Consensus 189 ~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~ip 236 (361)
T 2qag_A 189 LKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKASIP 236 (361)
T ss_dssp HHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhcCC
Confidence 555544 567777888899999999999999 8999999888866443
No 155
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.69 E-value=2.8e-17 Score=145.94 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=93.6
Q ss_pred EEEEEeCCCCc--cccCCCccccccccccccCCCcEEEEEEeCCC----------HHhHHHHHHHHHHHHhhhCCCCCcE
Q psy5810 89 FIVYSDTNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE----------RKTFKKAEDMLKTLWDSKYIGEKAV 156 (250)
Q Consensus 89 ~i~i~Dt~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~----------~~Sf~~~~~~~~~i~~~~~~~~~pi 156 (250)
.+++|||+||+ +.+|..||+ +++++|+|||+++ ..+|+++..|+..+.......++|+
T Consensus 218 ~l~iwDtaGQe~~r~~w~~yf~----------~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~pi 287 (402)
T 1azs_C 218 NFHMFDVGGQRDERRKWIQCFN----------DVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISV 287 (402)
T ss_dssp EEEEEEECCSGGGGGGGGGGTT----------TCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCE
T ss_pred cceecccchhhhhhhhhHhhcc----------CCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeE
Confidence 46789999997 789999999 9999999999999 8999999999999977655578999
Q ss_pred EEEeeCCCccCCCc---c---------------------------CHHHHHHHHH-----H--------hCCeEEEEecC
Q psy5810 157 ILVANKADLERRRQ---V---------------------------THSDGKKLAY-----A--------WGVKFVETSVG 193 (250)
Q Consensus 157 ilv~nK~Dl~~~~~---v---------------------------~~~~~~~~~~-----~--------~~~~~~evSa~ 193 (250)
+|||||+|+...+. + +.+++..|+. . .++.+++|||+
T Consensus 288 iLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 288 ILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 99999999854332 2 1456666642 2 24557899999
Q ss_pred CCCCHHHHHHHHHHHHHhhh
Q psy5810 194 LVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 194 ~~~~I~~lf~~l~~~i~~~~ 213 (250)
++.||.++|.++...+.+..
T Consensus 368 d~~nV~~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRMH 387 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHH
Confidence 99999999999988776543
No 156
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.68 E-value=5.2e-18 Score=155.81 Aligned_cols=141 Identities=12% Similarity=0.057 Sum_probs=94.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccc----cccC----------ceeEEEEEeCCCCc--cccCCCcccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHP----------DVFFIVYSDTNHTQ--RCLTPMPFCSQVENFV 115 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~----------~~~~i~i~Dt~g~~--~~~~~~~~~~~~~~~~ 115 (250)
.+|+++|.+|+|||||++ +|.+. .+.. ++.. .-..+.+|||||++ ..+...++.
T Consensus 5 pkV~IvG~~~vGKTSLl~-~L~~~--~~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~~~~~------- 74 (537)
T 3izy_P 5 PVVTIMGHVDHGKTTLLD-KLRKT--QVAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRARGTQ------- 74 (537)
T ss_dssp CBCEEEESTTTTHHHHHH-HHHHH--HHHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBBSSSB-------
T ss_pred CEEEEECCCCCCHHHHHH-HHhCC--CcccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHHHHHc-------
Confidence 459999999999999998 77753 1111 1000 01157899999986 444455555
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc-cCHHHHHHH---HHHh--CCeEEE
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ-VTHSDGKKL---AYAW--GVKFVE 189 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~-v~~~~~~~~---~~~~--~~~~~e 189 (250)
.+|++|+|+|+++....+....| ..+. ..++|+++++||+|+.+... ....+...+ +..+ .+++++
T Consensus 75 ---~aD~vILVVDa~dg~~~qt~e~l-~~~~----~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~ 146 (537)
T 3izy_P 75 ---VTDIVILVVAADDGVMKQTVESI-QHAK----DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVH 146 (537)
T ss_dssp ---SBSSCEEECBSSSCCCHHHHHHH-HHHH----TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECC
T ss_pred ---cCCEEEEEEECCCCccHHHHHHH-HHHH----HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEE
Confidence 89999999999996655544433 2232 24789999999999864221 111111111 1122 247999
Q ss_pred EecCCCCCHHHHHHHHHHHHH
Q psy5810 190 TSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~ 210 (250)
+||++|.|++++|+++...+.
T Consensus 147 vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 147 VSALTGENMMALAEATIALAE 167 (537)
T ss_dssp CCSSSSCSSHHHHHHHHHHHT
T ss_pred EECCCCCCchhHHHHHHHhhh
Confidence 999999999999999997764
No 157
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.68 E-value=7.5e-17 Score=150.09 Aligned_cols=144 Identities=12% Similarity=0.095 Sum_probs=98.9
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccccc---------ccc------cccCce----------------eEEEEEeCCCCc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVEN---------FVQ------TYHPDV----------------FFIVYSDTNHTQ 99 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~~---------~~~------~~~~~~----------------~~i~i~Dt~g~~ 99 (250)
..+|+|+|..++|||||++ +++..... +.+ +.|.++ ..+.+|||+|+.
T Consensus 4 irnI~IiGh~d~GKTTLi~-rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSD-RIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp EEEEEEECCC----CCHHH-HHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CeEEEEECCCCCCHHHHHH-HHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 4569999999999999998 77652111 111 111111 257799999986
Q ss_pred c--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHH
Q psy5810 100 R--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGK 177 (250)
Q Consensus 100 ~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~ 177 (250)
. ..+..++. .+|++|+|+|.++..+++....|..... .++|+++|+||+|+.+.. ..+...
T Consensus 83 dF~~ev~~~l~----------~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ 145 (599)
T 3cb4_D 83 DFSYEVSRSLA----------ACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD--PERVAE 145 (599)
T ss_dssp GGHHHHHHHHH----------HCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHH
T ss_pred HHHHHHHHHHH----------HCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc--HHHHHH
Confidence 3 22222333 7999999999999888877777766542 478999999999996533 233455
Q ss_pred HHHHHhCCe---EEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 178 KLAYAWGVK---FVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 178 ~~~~~~~~~---~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
++.+.+++. ++++||++|.||+++|+++.+.+...
T Consensus 146 ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 146 EIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp HHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred HHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 666777764 89999999999999999999877643
No 158
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.68 E-value=1.4e-17 Score=150.12 Aligned_cols=142 Identities=14% Similarity=0.124 Sum_probs=93.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccc-------------------------------cccCce-----------
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------------------------------TYHPDV----------- 87 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------------------------------~~~~~~----------- 87 (250)
..++|+++|..|+|||||++ +|+.....+.. ..+.++
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~-~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVG-RLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHH-HHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CEEEEEEEeCCCCCHHHHHH-HHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 45789999999999999998 77653111110 011222
Q ss_pred eEEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhh---CCCCC-cEEEEee
Q psy5810 88 FFIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSK---YIGEK-AVILVAN 161 (250)
Q Consensus 88 ~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~---~~~~~-piilv~n 161 (250)
..+.+|||+|+++. ....++. .+|++|+|+|+++ .+|+.+..|..+..++. ...++ |+++++|
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~----------~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviN 152 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGAS----------QADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN 152 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSS----------CCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred eEEEEEECCCcHHHHHHHHhhhh----------hcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEE
Confidence 16889999998732 2223344 8999999999999 78886544333222211 11244 6899999
Q ss_pred CCCccCCC------ccCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy5810 162 KADLERRR------QVTHSDGKKLAYAWG-----VKFVETSVGLVYKTDELLV 203 (250)
Q Consensus 162 K~Dl~~~~------~v~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~lf~ 203 (250)
|+|+.+.. ....+++.++++.++ ++++++||++|.|+.+++.
T Consensus 153 K~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 153 KMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 99986521 122455677777766 6799999999999986554
No 159
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.68 E-value=7.7e-18 Score=152.70 Aligned_cols=165 Identities=14% Similarity=0.044 Sum_probs=95.7
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccc-ccccccCcee-----------EEEEEeCCCCcc----------ccCCCcccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVEN-FVQTYHPDVF-----------FIVYSDTNHTQR----------CLTPMPFCS 109 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~-~~~~~~~~~~-----------~i~i~Dt~g~~~----------~~~~~~~~~ 109 (250)
.+|+|+|.+|||||||+| ++++.... ..++.+.+.. .+.+|||+|... ..+..++.
T Consensus 24 ~~V~lvG~~nvGKSTL~n-~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~- 101 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFN-RIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD- 101 (456)
T ss_dssp CEEEEECSSSSSHHHHHH-HHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHH-
T ss_pred CEEEEECCCCCcHHHHHH-HHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHh-
Confidence 469999999999999999 88874211 2233333322 578999999531 11222333
Q ss_pred ccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCC-eEE
Q psy5810 110 QVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGV-KFV 188 (250)
Q Consensus 110 ~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~-~~~ 188 (250)
++|++|+|+|..+..+. ...|+.++.+. .+.|+++|+||+|+.+.+ ....++. ..++ ..+
T Consensus 102 ---------~ad~il~VvD~~~~~~~--~d~~l~~~l~~---~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~ 162 (456)
T 4dcu_A 102 ---------EADVIIFMVNGREGVTA--ADEEVAKILYR---TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPY 162 (456)
T ss_dssp ---------HCSEEEEEEESSSCSCH--HHHHHHHHHTT---CCSCEEEEEECC-------------CCSG-GGSSSSEE
T ss_pred ---------hCCEEEEEEeCCCCCCh--HHHHHHHHHHH---cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceE
Confidence 79999999998774333 33444444332 689999999999985321 1111111 2333 467
Q ss_pred EEecCCCCCHHHHHHHHHHHHHhhhhhhhHH--------HHHhhhhhhhhhhhhccC
Q psy5810 189 ETSVGLVYKTDELLVGIARQAGLNKKRNKLL--------AKKQKKMASYINNIKQFK 237 (250)
Q Consensus 189 evSa~~~~~I~~lf~~l~~~i~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 237 (250)
++||++|.|+.++++.+.+.+.......... .......+++++++.+..
T Consensus 163 ~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~vGKSslin~l~~~~ 219 (456)
T 4dcu_A 163 PISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNVGKSSLVNAMLGEE 219 (456)
T ss_dssp ECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred EeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCCCHHHHHHHHhCCC
Confidence 9999999999999999987665322111100 001135667777777654
No 160
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.67 E-value=1.3e-16 Score=148.23 Aligned_cols=145 Identities=13% Similarity=0.113 Sum_probs=101.1
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccc---------cccc------ccCc----------------eeEEEEEeCCCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN---------FVQT------YHPD----------------VFFIVYSDTNHT 98 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~---------~~~~------~~~~----------------~~~i~i~Dt~g~ 98 (250)
+..+|+|+|..++|||||++ +++..... +.++ .|.+ ...+.+|||+|+
T Consensus 5 ~irnI~IiGh~d~GKTTLi~-rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLAD-RLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GEEEEEEECC--CCHHHHHH-HHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred CceEEEEECCCCCCHHHHHH-HHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 45679999999999999998 77542111 1110 1111 125779999998
Q ss_pred ccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHH
Q psy5810 99 QRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDG 176 (250)
Q Consensus 99 ~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~ 176 (250)
... ....++. .+|++|+|+|.++..+++....|..... .++|+++++||+|+.+.. .....
T Consensus 84 ~dF~~ev~r~l~----------~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~ 146 (600)
T 2ywe_A 84 VDFSYEVSRALA----------ACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD--VDRVK 146 (600)
T ss_dssp GGGHHHHHHHHH----------TCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHH
T ss_pred HhHHHHHHHHHH----------hCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC--HHHHH
Confidence 632 1222233 7999999999999888888877766542 478999999999996532 22334
Q ss_pred HHHHHHhCCe---EEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 177 KKLAYAWGVK---FVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 177 ~~~~~~~~~~---~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
.++.+.+++. ++++||++|.||.++|+++++.+...
T Consensus 147 ~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 147 KQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp HHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred HHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 5566666763 89999999999999999999877643
No 161
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.67 E-value=1.8e-17 Score=140.58 Aligned_cols=154 Identities=11% Similarity=0.090 Sum_probs=83.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccccc-----------ccccCcee-----------EEEEEeCCCCccccCCC-c
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-----------QTYHPDVF-----------FIVYSDTNHTQRCLTPM-P 106 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-----------~~~~~~~~-----------~i~i~Dt~g~~~~~~~~-~ 106 (250)
..++|+|+|.+|+|||||+| ++.+. ..+. ++.+.+.. .+.+|||+|........ .
T Consensus 7 ~~~~I~vvG~~g~GKSTLin-~L~~~-~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLIN-SLFLT-DLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHH-HHSSS-CC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTT
T ss_pred cEEEEEEECCCCCCHHHHHH-HHhCC-CccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhh
Confidence 35789999999999999999 65443 2222 22222211 67899999973221110 0
Q ss_pred ccccc-------cccc-----------ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 107 FCSQV-------ENFV-----------QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 107 ~~~~~-------~~~~-----------~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
+.... +.|. .-.++|+++++++.+...-...-..+++.+.. ++|+++|+||+|+...
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTP 159 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCH
Confidence 11000 1110 01147899999977652211122335555521 7999999999997532
Q ss_pred CccC--HHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 169 RQVT--HSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 169 ~~v~--~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
..+. .+...+.....+++++++||+++.|+.+++.+|...+.
T Consensus 160 ~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 2221 23345556677899999999999999999999887543
No 162
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.67 E-value=2e-16 Score=132.24 Aligned_cols=163 Identities=12% Similarity=0.052 Sum_probs=98.9
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccc--c----ccccCcee-------EEEEEeCCCCcccc--C-CCcccccc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENF--V----QTYHPDVF-------FIVYSDTNHTQRCL--T-PMPFCSQV 111 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~--~----~~~~~~~~-------~i~i~Dt~g~~~~~--~-~~~~~~~~ 111 (250)
....++|+|+|.+|||||||+| ++++..... . .|...... .+.+|||||....- . ..+.....
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin-~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGN-SILGQRRFFSRLGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHH-HHHTSCCC---------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCCceEEEEECCCCCcHHHHHH-HHhCCCCccccCCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 3456889999999999999999 777742111 0 11111111 67899999975211 0 11211111
Q ss_pred ccc-cccCCCcEEEEEEeCCCHHhH-HHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCc---c---CHHHHHHHHHHh
Q psy5810 112 ENF-VQTYHPDVFVIVYSVIERKTF-KKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ---V---THSDGKKLAYAW 183 (250)
Q Consensus 112 ~~~-~~~~~ad~iilV~D~~~~~Sf-~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~---v---~~~~~~~~~~~~ 183 (250)
..+ ...+++|++|+|+|+++.... ..+.+|+.++.. ....+.|++|++||.|+.+... + ..+....+.+.+
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFG-EDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhC-hhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 111 112389999999999863221 222334443321 1113689999999999965321 1 113467778888
Q ss_pred CCeEEEEecCC-----CCCHHHHHHHHHHHHHhh
Q psy5810 184 GVKFVETSVGL-----VYKTDELLVGIARQAGLN 212 (250)
Q Consensus 184 ~~~~~evSa~~-----~~~I~~lf~~l~~~i~~~ 212 (250)
+..|+..++.. +.++.+++..+.+.+.+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88887777655 578999999998887753
No 163
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.66 E-value=2.7e-16 Score=141.83 Aligned_cols=141 Identities=12% Similarity=0.015 Sum_probs=89.6
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccc-------------------------------cccCcee--------
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------------------------------TYHPDVF-------- 88 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------------------------------~~~~~~~-------- 88 (250)
....++|+++|..++|||||++ +|+.....+.. ..+.++.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~-~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGG-QIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHH-HHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3456889999999999999998 77442111100 1122222
Q ss_pred ---EEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCHHh---HH---HHHHHHHHHHhhhCCCCCc-E
Q psy5810 89 ---FIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKT---FK---KAEDMLKTLWDSKYIGEKA-V 156 (250)
Q Consensus 89 ---~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~S---f~---~~~~~~~~i~~~~~~~~~p-i 156 (250)
.+.+|||+|+++. ....++. .+|++|+|+|.++... |+ ...+.+..+.. .++| +
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~----------~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~i 158 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGAS----------QADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHL 158 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHh----------hCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeE
Confidence 6789999998632 2233344 7999999999998532 22 12222222211 3566 9
Q ss_pred EEEeeCCCccCCC------ccCHHHHHHHHHHhC------CeEEEEecCCCCCHHHHHH
Q psy5810 157 ILVANKADLERRR------QVTHSDGKKLAYAWG------VKFVETSVGLVYKTDELLV 203 (250)
Q Consensus 157 ilv~nK~Dl~~~~------~v~~~~~~~~~~~~~------~~~~evSa~~~~~I~~lf~ 203 (250)
++++||+|+.... ....++...+++..+ ++++++||++|.|+.++++
T Consensus 159 IvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 159 IVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred EEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 9999999984311 111233445555554 4699999999999999665
No 164
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.66 E-value=6.4e-17 Score=151.28 Aligned_cols=142 Identities=14% Similarity=0.080 Sum_probs=88.4
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccccc-------------------------------cccCcee---------
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------------------------------TYHPDVF--------- 88 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------------------------------~~~~~~~--------- 88 (250)
...++|+++|.+|+|||||++ +|+........ ..|.++.
T Consensus 165 k~~lkV~ivG~~n~GKSTLin-~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMG-RLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHH-HHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred CCceEEEEEECCCCCHHHHHH-HHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 346789999999999999999 77753211111 1122221
Q ss_pred --EEEEEeCCCCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHH---hHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810 89 --FIVYSDTNHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERK---TFKKAEDMLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 89 --~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~---Sf~~~~~~~~~i~~~~~~~~~piilv~n 161 (250)
.+.+|||+|+++ .....++. .+|++|+|+|+++.. +|.....+...+.........|+|||+|
T Consensus 244 ~~~~~iiDTPG~e~f~~~~~~~~~----------~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvN 313 (611)
T 3izq_1 244 RANFTIVDAPGHRDFVPNAIMGIS----------QADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMN 313 (611)
T ss_dssp SCEEEEEECCSSSCHHHHHTTTSS----------CCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CceEEEEECCCCcccHHHHHHHHh----------hcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEe
Confidence 788999999863 22334445 899999999999852 1111111111111111112345999999
Q ss_pred CCCccCCCccCH----HHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q psy5810 162 KADLERRRQVTH----SDGKKLAYAWG-----VKFVETSVGLVYKTDEL 201 (250)
Q Consensus 162 K~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~evSa~~~~~I~~l 201 (250)
|+|+.+.+.... ++...+....+ ++++++||++|.||.++
T Consensus 314 KiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 314 KMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp CTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred cccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 999865332222 23344444444 57999999999999876
No 165
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.66 E-value=1.3e-16 Score=129.14 Aligned_cols=153 Identities=11% Similarity=0.014 Sum_probs=93.4
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccc--ccccccccCcee--------EEEEEeCCCCccccCCC----cccccccccc-
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQV--ENFVQTYHPDVF--------FIVYSDTNHTQRCLTPM----PFCSQVENFV- 115 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~--~~~~~~~~~~~~--------~i~i~Dt~g~~~~~~~~----~~~~~~~~~~- 115 (250)
..+|+++|++|||||||++ ++++.. ....++.|.+.. .+.+|||+|......+. .++.....+.
T Consensus 26 ~~~v~lvG~~g~GKSTLl~-~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ 104 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALN-TLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLE 104 (210)
T ss_dssp SEEEEEEECTTSSHHHHHT-TTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH-HHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHHHHHH
Confidence 3569999999999999998 788732 111233333321 36789999974211000 0111111111
Q ss_pred ccCCCcEEEEEEeCCCHHhHHH--HHHHHHHHHhhhCCCCCcEEEEeeCCCccCC--CccCHHHHHHHHHHhC--CeEEE
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKK--AEDMLKTLWDSKYIGEKAVILVANKADLERR--RQVTHSDGKKLAYAWG--VKFVE 189 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~--~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~--~~~~e 189 (250)
....++++++++|++++.++.. +..|+.. .+.|+++|+||+|+.+. ++...+.+..++.+.+ +.+++
T Consensus 105 ~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-------~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (210)
T 1pui_A 105 KRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-------SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVET 177 (210)
T ss_dssp HCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEE
T ss_pred hhhcccEEEEEEECCCCCchhHHHHHHHHHH-------cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEE
Confidence 1126899999999998765542 3334321 46899999999997542 2222345555665554 46889
Q ss_pred EecCCCCCHHHHHHHHHHHHHh
Q psy5810 190 TSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 190 vSa~~~~~I~~lf~~l~~~i~~ 211 (250)
+||+++.|+.++++++.+.+.+
T Consensus 178 ~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 178 FSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CBTTTTBSHHHHHHHHHHHHC-
T ss_pred EeecCCCCHHHHHHHHHHHHhh
Confidence 9999999999999999876543
No 166
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.66 E-value=1.9e-16 Score=141.69 Aligned_cols=147 Identities=16% Similarity=0.129 Sum_probs=97.1
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccc-ccccc----c--cccCc------------------------------eeEEE
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQ-VENFV----Q--TYHPD------------------------------VFFIV 91 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~-~~~~~----~--~~~~~------------------------------~~~i~ 91 (250)
...++|+++|..++|||||++ ++.+. .+.+. . |+... ...+.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~-~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTK-ALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHH-HHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHH-HHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 456789999999999999998 78742 11111 1 21111 14688
Q ss_pred EEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCC----HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 92 YSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIE----RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 92 i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~----~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
+|||+|++.... .+.. . +..+|++|+|+|+++ +++++.+..|. .+ ...|+++++||+|+.+
T Consensus 87 iiDtPGh~~f~~-~~~~----~---~~~~D~~ilVvda~~g~~~~qt~e~l~~~~-~~------~~~~iivviNK~Dl~~ 151 (410)
T 1kk1_A 87 FIDAPGHEALMT-TMLA----G---ASLMDGAILVIAANEPCPRPQTREHLMALQ-II------GQKNIIIAQNKIELVD 151 (410)
T ss_dssp EEECSSHHHHHH-HHHH----C---GGGCSEEEEEEETTSCSSCHHHHHHHHHHH-HH------TCCCEEEEEECGGGSC
T ss_pred EEECCChHHHHH-HHHh----h---hhhCCEEEEEEECCCCCCChhHHHHHHHHH-Hc------CCCcEEEEEECccCCC
Confidence 999999863221 1111 1 116899999999985 55666655332 11 2357999999999865
Q ss_pred CCc--cCHHHHHHHHHH---hCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 168 RRQ--VTHSDGKKLAYA---WGVKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 168 ~~~--v~~~~~~~~~~~---~~~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
... ...++..++++. .+++++++||++|.|+.+++++|...+..
T Consensus 152 ~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 152 KEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp HHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCC
Confidence 321 123445555544 35789999999999999999999876653
No 167
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.65 E-value=1.9e-16 Score=145.70 Aligned_cols=102 Identities=15% Similarity=0.042 Sum_probs=70.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccc----------------ccccc------cccCce-----------eEEEEEeCC
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQV----------------ENFVQ------TYHPDV-----------FFIVYSDTN 96 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~----------------~~~~~------~~~~~~-----------~~i~i~Dt~ 96 (250)
+..+|+|+|.+|||||||++ +|+... ..+.. ..+.++ ..+.+|||+
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~-~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTE-KLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHH-HHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHH-HHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 45679999999999999999 775110 00000 011111 267899999
Q ss_pred CCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 97 HTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 97 g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
|+.. ..+..+++ .+|++|+|+|.++..+.+....|. .+.. .++|+++|+||+|+..
T Consensus 91 G~~df~~~~~~~l~----------~aD~allVvDa~~g~~~~t~~~~~-~~~~----~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 91 GHADFTEDTYRTLT----------AVDSALMVIDAAKGVEPRTIKLME-VCRL----RHTPIMTFINKMDRDT 148 (528)
T ss_dssp CSTTCCHHHHHGGG----------GCSEEEEEEETTTCSCHHHHHHHH-HHHT----TTCCEEEEEECTTSCC
T ss_pred CchhHHHHHHHHHH----------hCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEeCCCCcc
Confidence 9863 22333444 799999999999987777766553 3322 4789999999999854
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.65 E-value=2.6e-16 Score=138.93 Aligned_cols=143 Identities=11% Similarity=0.025 Sum_probs=95.3
Q ss_pred EEEEEcCCCCchhhhchhhhcccccccc----ccccCceeEEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEe
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYS 128 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D 128 (250)
+|+++|..++|||||++ +|+.. .... ..+...-..+.+|||||+++.. ..+...+ +.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~-~L~~~-giTi~~~~~~~~~~~~~i~iiDtPGh~~f~-----~~~~~~~---~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAA-NLGKK-GTSSDITMYNNDKEGRNMVFVDAHSYPKTL-----KSLITAL---NISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHH-TTSEE-EEESSSEEEEECSSSSEEEEEECTTTTTCH-----HHHHHHH---HTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHH-HHHhC-CEEEEeeEEEEecCCeEEEEEECCChHHHH-----HHHHHHH---HHCCEEEEEEc
Confidence 69999999999999998 77731 1000 0011111268899999986421 1111111 17999999999
Q ss_pred CCCHHhHHHHHHHHHHHHhhhCCCCCcE-EEEee-CCCccCCCccCH--HHHHHHHHHhC---CeEEE--EecCC---CC
Q psy5810 129 VIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVAN-KADLERRRQVTH--SDGKKLAYAWG---VKFVE--TSVGL---VY 196 (250)
Q Consensus 129 ~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilv~n-K~Dl~~~~~v~~--~~~~~~~~~~~---~~~~e--vSa~~---~~ 196 (250)
+ ...+....+|+..+.. .++|. ++++| |+|+ +...+.. ++..++++..+ +++++ +||++ +.
T Consensus 93 -~-~g~~~qt~e~~~~~~~----~~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 93 -P-QGLDAHTGECIIALDL----LGFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp -T-TCCCHHHHHHHHHHHH----TTCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred -C-CCCcHHHHHHHHHHHH----cCCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 4 3445556666665543 35676 88888 9998 4332222 44555555443 68999 99999 99
Q ss_pred CHHHHHHHHHHHHHhh
Q psy5810 197 KTDELLVGIARQAGLN 212 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~ 212 (250)
|++++++.|.+.+...
T Consensus 166 gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 166 GVDELKARINEVAEKI 181 (370)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcccc
Confidence 9999999999876544
No 169
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.64 E-value=1.3e-16 Score=143.86 Aligned_cols=139 Identities=14% Similarity=0.045 Sum_probs=90.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccccc--------------cc-------------------ccCce---------
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFV--------------QT-------------------YHPDV--------- 87 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~--------------~~-------------------~~~~~--------- 87 (250)
..++|+++|..++|||||++ +|++....+. .+ .+.++
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~-~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIG-RLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHH-HHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CceEEEEEECCCCCHHHHHH-HHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45789999999999999998 7765321100 11 01111
Q ss_pred --eEEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810 88 --FFIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA 163 (250)
Q Consensus 88 --~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~ 163 (250)
..+.+|||+|+++. ....++. .+|++|+|+|+++.... ...+|+..+... .-.|+++|+||+
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~----------~aD~~ilVvDa~~g~~~-qt~~~l~~~~~~---~~~~iIvviNK~ 167 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGAS----------TCDLAIILVDARYGVQT-QTRRHSYIASLL---GIKHIVVAINKM 167 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHT----------TCSEEEEEEETTTCSCH-HHHHHHHHHHHT---TCCEEEEEEECT
T ss_pred CCceEEEEECCChHHHHHHHHHHHh----------hCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEEcC
Confidence 26889999998632 1122233 89999999999986432 234444444322 223699999999
Q ss_pred CccCCCc--c--CHHHHHHHHHHhC-----CeEEEEecCCCCCHHHHHH
Q psy5810 164 DLERRRQ--V--THSDGKKLAYAWG-----VKFVETSVGLVYKTDELLV 203 (250)
Q Consensus 164 Dl~~~~~--v--~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~lf~ 203 (250)
|+.+... + ..++..++++.++ ++++++||++|.|+.++|.
T Consensus 168 Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~ 216 (434)
T 1zun_B 168 DLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE 216 (434)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred cCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence 9864211 1 2345666777777 6799999999999988543
No 170
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.64 E-value=1.6e-16 Score=144.15 Aligned_cols=138 Identities=11% Similarity=0.040 Sum_probs=89.6
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccccccc-------------------------c------cccCce----------
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-------------------------Q------TYHPDV---------- 87 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-------------------------~------~~~~~~---------- 87 (250)
...++|+++|..++|||||++ +|++....+. + ..+.++
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~-~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~ 83 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTG-HLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETP 83 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHH-HHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECS
T ss_pred CceeEEEEEcCCCCCHHHHHH-HHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecC
Confidence 356889999999999999998 7765211110 0 122332
Q ss_pred -eEEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCHH---hHH---HHHHHHHHHHhhhCCCCCc-EE
Q psy5810 88 -FFIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERK---TFK---KAEDMLKTLWDSKYIGEKA-VI 157 (250)
Q Consensus 88 -~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~---Sf~---~~~~~~~~i~~~~~~~~~p-ii 157 (250)
..+.+|||+|+++. ....++. .+|++|+|+|+++.. +|+ ...+++..+.. .++| ++
T Consensus 84 ~~~~~iiDtPGh~~f~~~~~~~~~----------~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~ii 149 (458)
T 1f60_A 84 KYQVTVIDAPGHRDFIKNMITGTS----------QADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLI 149 (458)
T ss_dssp SEEEEEEECCCCTTHHHHHHHSSS----------CCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEE
T ss_pred CceEEEEECCCcHHHHHHHHhhhh----------hCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEE
Confidence 26889999998631 1222333 899999999999863 442 22233332322 3565 99
Q ss_pred EEeeCCCccCCCc----cCHHHHHHHHHHhC-----CeEEEEecCCCCCHHHH
Q psy5810 158 LVANKADLERRRQ----VTHSDGKKLAYAWG-----VKFVETSVGLVYKTDEL 201 (250)
Q Consensus 158 lv~nK~Dl~~~~~----v~~~~~~~~~~~~~-----~~~~evSa~~~~~I~~l 201 (250)
+++||+|+.+... ...++...+++.++ ++++++||++|.|+.++
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 9999999863111 12345566666666 57999999999998754
No 171
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.64 E-value=1e-16 Score=143.28 Aligned_cols=134 Identities=13% Similarity=0.093 Sum_probs=89.8
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccc---cc---ccc-----------ccccCce-----------eEEEEEeCCCCc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQ---VE---NFV-----------QTYHPDV-----------FFIVYSDTNHTQ 99 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~---~~---~~~-----------~~~~~~~-----------~~i~i~Dt~g~~ 99 (250)
....++|+++|..|+|||||++ +|.+. .. .+. .+.+.++ ..+.+|||+|++
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~-~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTA-ALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHH-HHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHH-HHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH
Confidence 4456889999999999999998 77662 00 110 0122221 268899999987
Q ss_pred ccc--CCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCc---cCH
Q psy5810 100 RCL--TPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQ---VTH 173 (250)
Q Consensus 100 ~~~--~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~---v~~ 173 (250)
+.. ...++. .+|++|+|+|.++.... ...+|+..+.. .++| +++++||+|+.+... ...
T Consensus 87 ~f~~~~~~~~~----------~aD~~ilVvda~~g~~~-qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~ 151 (405)
T 2c78_A 87 DYIKNMITGAA----------QMDGAILVVSAADGPMP-QTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVE 151 (405)
T ss_dssp GGHHHHHHHHT----------TCSSEEEEEETTTCCCH-HHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHH
T ss_pred HHHHHHHHHHH----------HCCEEEEEEECCCCCcH-HHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHH
Confidence 421 112222 79999999999986543 34556655533 3678 899999999864221 112
Q ss_pred HHHHHHHHHhC-----CeEEEEecCCCCC
Q psy5810 174 SDGKKLAYAWG-----VKFVETSVGLVYK 197 (250)
Q Consensus 174 ~~~~~~~~~~~-----~~~~evSa~~~~~ 197 (250)
++..++++.++ ++++++||++|.|
T Consensus 152 ~~~~~~l~~~~~~~~~~~~i~~SA~~g~~ 180 (405)
T 2c78_A 152 MEVRDLLNQYEFPGDEVPVIRGSALLALE 180 (405)
T ss_dssp HHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred HHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence 35666777665 5799999999987
No 172
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.63 E-value=8.4e-17 Score=146.25 Aligned_cols=142 Identities=12% Similarity=0.010 Sum_probs=87.1
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhcccccccc-------------------------------ccccCce----------
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENFV-------------------------------QTYHPDV---------- 87 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~-------------------------------~~~~~~~---------- 87 (250)
...++|+++|..++|||||++ +|+.....+. ...+.|+
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~-~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGG-NILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHH-HHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS
T ss_pred CCeeEEEEEECCCCCHHHHHH-HHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC
Confidence 356789999999999999998 6753211110 0122222
Q ss_pred -eEEEEEeCCCCccc--cCCCccccccccccccCCCcEEEEEEeCCCH---HhHHHHHHHHHHHHhhhCCCCCc-EEEEe
Q psy5810 88 -FFIVYSDTNHTQRC--LTPMPFCSQVENFVQTYHPDVFVIVYSVIER---KTFKKAEDMLKTLWDSKYIGEKA-VILVA 160 (250)
Q Consensus 88 -~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~---~Sf~~~~~~~~~i~~~~~~~~~p-iilv~ 160 (250)
..+.+|||+|+++. .....+. .+|++|+|+|+++. .+|+...+|.+.+... ...++| +++++
T Consensus 120 ~~~~~iiDtPGh~~f~~~~~~~~~----------~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~-~~~~vp~iivvi 188 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGYVTNMINGAS----------QADIGVLVISARRGEFEAGFERGGQTREHAVLA-RTQGINHLVVVI 188 (467)
T ss_dssp SEEEEECCCCC-----------TT----------SCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHH-HHTTCSSEEEEE
T ss_pred CeEEEEEECCCcHHHHHHHHhhcc----------cCCEEEEEEeCCcCccccccCCCCcHHHHHHHH-HHcCCCEEEEEE
Confidence 16789999998732 2223334 79999999999986 4554333333322211 114677 99999
Q ss_pred eCCCccCCC------ccCHHHHHHHHHHh-------CCeEEEEecCCCCCHHHHH
Q psy5810 161 NKADLERRR------QVTHSDGKKLAYAW-------GVKFVETSVGLVYKTDELL 202 (250)
Q Consensus 161 nK~Dl~~~~------~v~~~~~~~~~~~~-------~~~~~evSa~~~~~I~~lf 202 (250)
||+|+.... ....++...+++.. +++++++||++|.|+.++|
T Consensus 189 NK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 189 NKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp ECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 999985311 11233566667666 3569999999999998866
No 173
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.63 E-value=3.6e-16 Score=139.36 Aligned_cols=144 Identities=14% Similarity=0.101 Sum_probs=96.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhcccc-----cccc-----------ccccCce-----------eEEEEEeCCCCccc--
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQV-----ENFV-----------QTYHPDV-----------FFIVYSDTNHTQRC-- 101 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~-----~~~~-----------~~~~~~~-----------~~i~i~Dt~g~~~~-- 101 (250)
.++|+++|..++|||||++ +|.+.. ..+. ...+.++ ..+.+|||+|+++.
T Consensus 3 ~~~I~iiG~~~~GKSTLi~-~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTA-AITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp EEEEEEESSTTSSHHHHHH-HHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHH-HHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 5789999999999999998 776631 0110 0122222 26789999998632
Q ss_pred cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCc---cCHHHHH
Q psy5810 102 LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQ---VTHSDGK 177 (250)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~---v~~~~~~ 177 (250)
....++. .+|++|+|+|.++....+....| ..+.. .++| +++++||+|+.+... ...++..
T Consensus 82 ~~~~~~~----------~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~ 146 (397)
T 1d2e_A 82 NMITGTA----------PLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIR 146 (397)
T ss_dssp HHHHTSS----------CCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHH
T ss_pred HHHhhHh----------hCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHH
Confidence 2222333 79999999999985443333333 33322 3678 789999999864221 1234566
Q ss_pred HHHHHhC-----CeEEEEecCCCCC----------HHHHHHHHHHHHH
Q psy5810 178 KLAYAWG-----VKFVETSVGLVYK----------TDELLVGIARQAG 210 (250)
Q Consensus 178 ~~~~~~~-----~~~~evSa~~~~~----------I~~lf~~l~~~i~ 210 (250)
++++.++ ++++++||++|.| +.++++.+.+.+.
T Consensus 147 ~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p 194 (397)
T 1d2e_A 147 ELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP 194 (397)
T ss_dssp HHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence 7777766 5899999999764 8888888877654
No 174
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.61 E-value=1e-16 Score=146.18 Aligned_cols=135 Identities=19% Similarity=0.209 Sum_probs=88.7
Q ss_pred EEEEEEcCCCCchhhhchhhhccccccccc----cccCc---------eeEEEEEeCCCCcc--ccCCCccccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFVQ----TYHPD---------VFFIVYSDTNHTQR--CLTPMPFCSQVENFVQ 116 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~----~~~~~---------~~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~ 116 (250)
.+|+++|..++|||||++ ++.+. .+.. .+... -..+.+|||||++. .++...+.
T Consensus 5 ~~V~IvGhvd~GKTTLl~-~L~~~--~v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~~~~-------- 73 (501)
T 1zo1_I 5 PVVTIMGHVDHGKTSLLE-YIRST--KVASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRARGAQ-------- 73 (501)
T ss_dssp CCEEEEESTTSSSHHHHH-HHHHH--HHSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCSSSB--------
T ss_pred eEEEEECCCCCCHHHHHH-HHHcC--CCccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHHHHh--------
Confidence 459999999999999998 77652 1111 01100 01678999999863 33333444
Q ss_pred cCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC--CccCHH--HHHHHHHHhC--CeE
Q psy5810 117 TYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR--RQVTHS--DGKKLAYAWG--VKF 187 (250)
Q Consensus 117 ~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~--~~~~~~~~~~--~~~ 187 (250)
.+|++|+|+|+++ +++++.+. .+.. .++|+++++||+|+.+. ..+..+ +...++..++ +++
T Consensus 74 --~aD~aILVVda~~g~~~qT~e~l~----~~~~----~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~ 143 (501)
T 1zo1_I 74 --ATDIVVLVVAADDGVMPQTIEAIQ----HAKA----AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQF 143 (501)
T ss_dssp --SCSSEEEEEETTTBSCTTTHHHHH----HHHH----TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEE
T ss_pred --hCCEEEEEeecccCccHHHHHHHH----HHHh----cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccE
Confidence 7999999999988 44544332 2221 47899999999998542 111110 0001122233 689
Q ss_pred EEEecCCCCCHHHHHHHHHH
Q psy5810 188 VETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 188 ~evSa~~~~~I~~lf~~l~~ 207 (250)
+++||++|.|+.++|+++..
T Consensus 144 v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 144 VHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp EECCTTTCTTCTTHHHHTTT
T ss_pred EEEeeeeccCcchhhhhhhh
Confidence 99999999999999999875
No 175
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.60 E-value=4.7e-15 Score=132.47 Aligned_cols=154 Identities=11% Similarity=-0.004 Sum_probs=105.3
Q ss_pred EEEEcCCCCchhhhchhhhcccccc----ccccccCcee--------EEEEEeCCCCccccC--CCccccccccccccCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF--------FIVYSDTNHTQRCLT--PMPFCSQVENFVQTYH 119 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~--------~i~i~Dt~g~~~~~~--~~~~~~~~~~~~~~~~ 119 (250)
|+|+|.+|||||||++ .+++.... ...+..++.. .+.+||++|...... ........+ .+..
T Consensus 160 VgLVG~~gAGKSTLL~-~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~---~~er 235 (416)
T 1udx_A 160 VGLVGYPNAGKSSLLA-AMTRAHPKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR---HIAR 235 (416)
T ss_dssp EEEECCGGGCHHHHHH-HHCSSCCEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH---HHTS
T ss_pred EEEECCCCCcHHHHHH-HHHcCCccccCcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH---HHHH
Confidence 8999999999999997 78774211 1122333332 477999999752110 000000011 1126
Q ss_pred CcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 120 ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
++.+++++|++ ...+.++..|..++..... ....|.++|+||+|+... ...++..+.+...+++++++||+++.|+
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGL 312 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence 89999999998 6677788888777755421 135799999999998653 2234445555666889999999999999
Q ss_pred HHHHHHHHHHHHhhhh
Q psy5810 199 DELLVGIARQAGLNKK 214 (250)
Q Consensus 199 ~~lf~~l~~~i~~~~~ 214 (250)
++++.++.+.+.+...
T Consensus 313 ~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 313 PALKEALHALVRSTPP 328 (416)
T ss_dssp HHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998876543
No 176
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.60 E-value=1.2e-15 Score=144.68 Aligned_cols=113 Identities=12% Similarity=-0.012 Sum_probs=77.5
Q ss_pred EEEEEeCCCCcc-----ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCC
Q psy5810 89 FIVYSDTNHTQR-----CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKA 163 (250)
Q Consensus 89 ~i~i~Dt~g~~~-----~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~ 163 (250)
.+.+|||||... ..+..++. ++|++|+|+|.+++.+..+...|...+.. .+.|+++|+||+
T Consensus 175 ~l~LiDTPGl~~~~~~~~~~~~~i~----------~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~ 240 (695)
T 2j69_A 175 GIEIVDSPGLNDTEARNELSLGYVN----------NCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAW 240 (695)
T ss_dssp TEEEEECCCHHHHHTCHHHHTHHHH----------SSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECG
T ss_pred CeEEEECCCCCchhhHHHHHHHHHH----------hCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECc
Confidence 478999999642 22223333 89999999999999888887767554422 367899999999
Q ss_pred CccCCCccCHH----------HHHH-----HHHH--------hCCeEEEEecC--------------CCCCHHHHHHHHH
Q psy5810 164 DLERRRQVTHS----------DGKK-----LAYA--------WGVKFVETSVG--------------LVYKTDELLVGIA 206 (250)
Q Consensus 164 Dl~~~~~v~~~----------~~~~-----~~~~--------~~~~~~evSa~--------------~~~~I~~lf~~l~ 206 (250)
|+.....++.+ .... +... ...+++++||+ ++.|+.+++..+.
T Consensus 241 Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~ 320 (695)
T 2j69_A 241 DQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLN 320 (695)
T ss_dssp GGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHH
T ss_pred ccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHH
Confidence 98643322221 1111 1111 12358999999 9999999999999
Q ss_pred HHHHhhhhh
Q psy5810 207 RQAGLNKKR 215 (250)
Q Consensus 207 ~~i~~~~~~ 215 (250)
+.+...+..
T Consensus 321 ~~l~~~~~~ 329 (695)
T 2j69_A 321 TFLTRERAI 329 (695)
T ss_dssp HHHHHTHHH
T ss_pred HHHHHhHHH
Confidence 877654443
No 177
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.58 E-value=1.3e-15 Score=136.17 Aligned_cols=153 Identities=14% Similarity=0.110 Sum_probs=78.9
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccc---c-------ccccc-----Cc------eeEEEEEeCCCCccccCCC-cccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVEN---F-------VQTYH-----PD------VFFIVYSDTNHTQRCLTPM-PFCS 109 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~---~-------~~~~~-----~~------~~~i~i~Dt~g~~~~~~~~-~~~~ 109 (250)
++|+|+|++|||||||++ .+++.... . ..+.+ .. ...+.+|||+|........ .+..
T Consensus 32 f~I~lvG~sGaGKSTLln-~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLIN-SLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp EEEEEECCTTSSHHHHHH-HHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred EEEEEECCCCCcHHHHHH-HHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 669999999999999998 77763110 0 01111 00 0157799999976322100 0000
Q ss_pred c-------cccc--------c-ccCCCcEEEEEEeCCCH-HhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc
Q psy5810 110 Q-------VENF--------V-QTYHPDVFVIVYSVIER-KTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERRRQV 171 (250)
Q Consensus 110 ~-------~~~~--------~-~~~~ad~iilV~D~~~~-~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v 171 (250)
. .+.+ . .+.++++.+++|+.+.. .+|+.+. .|+..+. .++|+|+|+||+|+...+.+
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHH
Confidence 0 0000 0 11256665666666543 4555554 5777662 37899999999998655555
Q ss_pred CH--HHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 172 TH--SDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 172 ~~--~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
.. +++.+++..++++++++||+++.++.++|..+...+.
T Consensus 186 ~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 186 QQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 54 6778888889999999999999999998888876544
No 178
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.58 E-value=2.3e-15 Score=146.99 Aligned_cols=147 Identities=13% Similarity=0.035 Sum_probs=97.3
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcccc-----ccc-----------cccccCce-----------eEEEEEeCCCCcc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQV-----ENF-----------VQTYHPDV-----------FFIVYSDTNHTQR 100 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~-----~~~-----------~~~~~~~~-----------~~i~i~Dt~g~~~ 100 (250)
....++|+++|..++|||||++ ++.+.. ..+ ..+.|.++ ..+.+|||+|+++
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLIn-rLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTA-AITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHH-HHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHH-HHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 4456889999999999999998 776531 000 01222222 1688999999874
Q ss_pred c--cCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccCCCc---cCHH
Q psy5810 101 C--LTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQ---VTHS 174 (250)
Q Consensus 101 ~--~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~~~~---v~~~ 174 (250)
. ....++. .+|++|+|+|+++....+ ..+|+..+.. .++| +|+++||+|+.+... ...+
T Consensus 372 F~~~mi~gas----------~AD~aILVVDAtdGv~~Q-TrEhL~ll~~----lgIP~IIVVINKiDLv~d~e~le~i~e 436 (1289)
T 3avx_A 372 YVKNMITGAA----------QMDGAILVVAATDGPMPQ-TREHILLGRQ----VGVPYIIVFLNKCDMVDDEELLELVEM 436 (1289)
T ss_dssp HHHHHHHTSC----------CCSEEEEEEETTTCSCTT-HHHHHHHHHH----HTCSCEEEEEECCTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHh----------hCCEEEEEEcCCccCcHH-HHHHHHHHHH----cCCCeEEEEEeecccccchhhHHHHHH
Confidence 2 1222333 799999999999864333 3445544433 3678 899999999864222 1234
Q ss_pred HHHHHHHHhC-----CeEEEEecCCC--------CCHHHHHHHHHHHHH
Q psy5810 175 DGKKLAYAWG-----VKFVETSVGLV--------YKTDELLVGIARQAG 210 (250)
Q Consensus 175 ~~~~~~~~~~-----~~~~evSa~~~--------~~I~~lf~~l~~~i~ 210 (250)
++.++++..+ ++++++||++| .||.++++.+.+.+.
T Consensus 437 Ei~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 437 EVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence 5667777766 57999999999 468888888776554
No 179
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.57 E-value=6.2e-15 Score=124.05 Aligned_cols=120 Identities=11% Similarity=0.097 Sum_probs=75.2
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccccccccC-ce-----------eEEEEEeCCCCcc--ccCCCcccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQTYHP-DV-----------FFIVYSDTNHTQR--CLTPMPFCSQVENFV 115 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~-~~-----------~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~ 115 (250)
+.++|+++|.+|||||||++ ++.+....+...+.+ +. ..+.+|||+|++. .....+++ ....+.
T Consensus 35 ~~~~I~lvG~~g~GKSSLin-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~-~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVN-SLIGEQVVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALE-LIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHH-HHHTSCCSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHH-HHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHH-HHhCCCCcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHH-HHHHHH
Confidence 56889999999999999999 788743222222111 11 1678999999862 22222222 111122
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCCC-CCcEEEEeeCCCccCCCccC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYIG-EKAVILVANKADLERRRQVT 172 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~~-~~piilv~nK~Dl~~~~~v~ 172 (250)
...++|++++|+|++... +... ..|+..+....... ..|+++|+||+|+...+...
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~ 170 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELS 170 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCC
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCcc
Confidence 222689999999998754 4333 46777775543221 24999999999985433333
No 180
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.56 E-value=3.1e-16 Score=134.77 Aligned_cols=153 Identities=10% Similarity=0.051 Sum_probs=81.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccccc------------ccccC-----------ceeEEEEEeCCCCcc--------
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFV------------QTYHP-----------DVFFIVYSDTNHTQR-------- 100 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~------------~~~~~-----------~~~~i~i~Dt~g~~~-------- 100 (250)
++|+|+|++|||||||++ ++.+. ..+. .+... ....+.+|||+|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~-~L~g~-~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLIN-SLFLT-DLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp EEEEEEEETTSSHHHHHH-HHHC-------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred EEEEEECCCCCCHHHHHH-HHhCC-CccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 679999999999999998 65542 0111 11100 011578999999731
Q ss_pred -ccCC-------Ccccccc---ccccccCCCcEEEEEEeCCCHHhHHHHH-HHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 101 -CLTP-------MPFCSQV---ENFVQTYHPDVFVIVYSVIERKTFKKAE-DMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 101 -~~~~-------~~~~~~~---~~~~~~~~ad~iilV~D~~~~~Sf~~~~-~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
.+.. .+++... ........+++++++.+.+. .+|+.+. +++..+ ..+.|+++|+||+|+...
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~l~~l-----~~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTL 170 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHHHHHH-----TTTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHHHHHH-----HhcCCEEEEEEeCCCCCH
Confidence 1111 1111000 00011123455555554332 1343332 233333 146799999999998653
Q ss_pred Cc--cCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHHhhh
Q psy5810 169 RQ--VTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 169 ~~--v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~~ 213 (250)
+. +..+++.++++.++++|+++||+++ |++++|.++.+.+....
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 33 3356788899999999999999999 99999999998886543
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.56 E-value=8.5e-16 Score=135.14 Aligned_cols=114 Identities=11% Similarity=0.048 Sum_probs=71.8
Q ss_pred EEEEEeCCCCccccCCC---cc----ccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810 89 FIVYSDTNHTQRCLTPM---PF----CSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~---~~----~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n 161 (250)
.+.+|||||..+..... .. ......|. +++|++|+|+|.++..... ..|+..+.. ....+.|+++|+|
T Consensus 137 ~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i--~~~d~iilvv~~~~~~~~~--~~~~~l~~~-~~~~~~~~i~V~n 211 (360)
T 3t34_A 137 NLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYI--EKPNCIILAISPANQDLAT--SDAIKISRE-VDPSGDRTFGVLT 211 (360)
T ss_dssp SEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHH--HSSSEEEEEEEETTSCGGG--CHHHHHHHH-SCTTCTTEEEEEE
T ss_pred CeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHh--hcCCeEEEEeecccCCcCC--HHHHHHHHH-hcccCCCEEEEEe
Confidence 57899999986432110 00 11111121 2899999999876543322 233333322 2345789999999
Q ss_pred CCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHH
Q psy5810 162 KADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 162 K~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~l~~ 207 (250)
|+|+........+....+...++.+|+++|+.++.++++.+.....
T Consensus 212 K~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~ 257 (360)
T 3t34_A 212 KIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAA 257 (360)
T ss_dssp CGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHH
T ss_pred CCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHH
Confidence 9998665555555555555566788999999999998877665443
No 182
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.55 E-value=5.1e-15 Score=120.78 Aligned_cols=85 Identities=18% Similarity=0.054 Sum_probs=60.8
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHh--CCeEEEEecCCCC
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW--GVKFVETSVGLVY 196 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~evSa~~~~ 196 (250)
.++.+++|+|+++... ....+... .+.|+++|+||+|+.+.+....++..++++.. +++++++||++|.
T Consensus 129 ~~~~~i~vvd~~~~~~--~~~~~~~~-------~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~ 199 (221)
T 2wsm_A 129 GENYRVVMVSVTEGDD--VVEKHPEI-------FRVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGK 199 (221)
T ss_dssp SCSEEEEEEEGGGCTT--HHHHCHHH-------HHTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTB
T ss_pred ccCcEEEEEeCCCcch--hhhhhhhh-------hhcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCC
Confidence 5688999999887532 11112111 14788999999998653334566777777665 4689999999999
Q ss_pred CHHHHHHHHHHHHHhh
Q psy5810 197 KTDELLVGIARQAGLN 212 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~ 212 (250)
|+.++|+++.+.+...
T Consensus 200 gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 200 GFEEWIDFLRGILNVH 215 (221)
T ss_dssp THHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999877543
No 183
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.54 E-value=1.7e-14 Score=121.81 Aligned_cols=120 Identities=12% Similarity=0.042 Sum_probs=73.6
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccc-cccccCce-----------eEEEEEeCCCCccc--cCCCcccccccccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENF-VQTYHPDV-----------FFIVYSDTNHTQRC--LTPMPFCSQVENFV 115 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~-~~~~~~~~-----------~~i~i~Dt~g~~~~--~~~~~~~~~~~~~~ 115 (250)
..++|+++|.+|+|||||+| ++.+..... ....+.+. ..+.+|||+|.+.. ....+.. ....+.
T Consensus 38 ~~~~I~vvG~~g~GKSSLin-~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~-~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVN-SIIGERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALN-IIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHH-HHHTSCCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHH-HHhCCCcccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHH-HHHHHh
Confidence 56889999999999999999 787742111 11111111 16889999998632 1111111 111122
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHH-HHHHHHHHhhhCC-CCCcEEEEeeCCCccCCCccC
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKA-EDMLKTLWDSKYI-GEKAVILVANKADLERRRQVT 172 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~-~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~ 172 (250)
..+++|++++|+|++.. ++... ..|+..+...... ...|+++|+||+|+.....++
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~ 173 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP 173 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCC
Confidence 22368999999999763 34433 3677777554221 126999999999986544333
No 184
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.54 E-value=5.6e-15 Score=131.48 Aligned_cols=46 Identities=24% Similarity=0.243 Sum_probs=33.2
Q ss_pred CCcEEEEeeCCCccCCCccCHHHHHHHH---HHhCCeEEEEecCCCCCHHHHHH
Q psy5810 153 EKAVILVANKADLERRRQVTHSDGKKLA---YAWGVKFVETSVGLVYKTDELLV 203 (250)
Q Consensus 153 ~~piilv~nK~Dl~~~~~v~~~~~~~~~---~~~~~~~~evSa~~~~~I~~lf~ 203 (250)
..|+++|+||+|+.. .+....+. ...+.+++++||+.+.++.+++.
T Consensus 214 ~kP~i~v~NK~D~~~-----~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 214 NKPMVIAANKADAAS-----DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp HSCEEEEEECGGGSC-----HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCCEEEEEeCccccc-----hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 489999999999752 22233333 33367899999999999887654
No 185
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.53 E-value=8.4e-15 Score=126.04 Aligned_cols=118 Identities=11% Similarity=0.000 Sum_probs=65.4
Q ss_pred EEEEEeCCCCccccC-------CCccccccccccccCCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEe
Q psy5810 89 FIVYSDTNHTQRCLT-------PMPFCSQVENFVQTYHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVA 160 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~-------~~~~~~~~~~~~~~~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~ 160 (250)
.+.+|||+|..+.-. ..++......+. +++|++++|+|.++.. .-.....++..+ ...+.|+++|+
T Consensus 132 ~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~iilvvd~~~~~~~~~~~~~i~~~~----~~~~~~~i~v~ 205 (315)
T 1jwy_B 132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYI--KKQNAIIVAVTPANTDLANSDALQLAKEV----DPEGKRTIGVI 205 (315)
T ss_dssp SEEEEECCCCC---------CSHHHHHHHHHHHH--HSTTEEEEEEEESSSCSTTCSHHHHHHHH----CSSCSSEEEEE
T ss_pred CcEEEECCCCccCCCCCCchhHHHHHHHHHHHHH--cCCCeEEEEEEecCcchhhhHHHHHHHHh----CCCCCcEEEEE
Confidence 588999999753110 001111111222 2899999999974432 111112233333 23578999999
Q ss_pred eCCCccCCCccCHHHHHHHHHHhCCeEEEEecCC------CCCHHHHHHHHHHHHHhh
Q psy5810 161 NKADLERRRQVTHSDGKKLAYAWGVKFVETSVGL------VYKTDELLVGIARQAGLN 212 (250)
Q Consensus 161 nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~------~~~I~~lf~~l~~~i~~~ 212 (250)
||+|+........+........++..|+++|+.. +.|+.+++..+...+...
T Consensus 206 NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 206 TKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKNH 263 (315)
T ss_dssp ECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTC
T ss_pred cCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhCC
Confidence 9999865433222222211111225566666554 688999999988777543
No 186
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.53 E-value=1e-15 Score=125.34 Aligned_cols=58 Identities=21% Similarity=0.091 Sum_probs=47.7
Q ss_pred CcEEEEeeCCCccCCCccCHHHHHHHHHHh--CCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 154 KAVILVANKADLERRRQVTHSDGKKLAYAW--GVKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 154 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~--~~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
.|.++|+||+|+.+.+.+..+++.++++.+ +++++++||++|.|++++|+++.+.+..
T Consensus 165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 567999999998654445677777777765 5789999999999999999999887653
No 187
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.51 E-value=9.9e-16 Score=142.79 Aligned_cols=133 Identities=13% Similarity=0.030 Sum_probs=75.4
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccccc-------------------------------cccCce---------
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENFVQ-------------------------------TYHPDV--------- 87 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~~~-------------------------------~~~~~~--------- 87 (250)
....++|+++|.+|+|||||++ +|+........ ..|.|+
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~-~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~ 252 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLG-RIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES 252 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHH-HHHHHHHCC------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHH-HHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe
Confidence 3456889999999999999998 77532100000 111222
Q ss_pred --eEEEEEeCCCCcc--ccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHHhhhCCCC
Q psy5810 88 --FFIVYSDTNHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLWDSKYIGE 153 (250)
Q Consensus 88 --~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~~~~~~~~ 153 (250)
..+.+|||+|++. ......+. .+|++|+|+|+++. .+.+.+ ..+.. .+
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~----------~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~----lg 314 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGAS----------SADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA----LG 314 (592)
T ss_dssp ------CCEEESSSEEEEECCC-----------------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH----SS
T ss_pred CCeEEEEEECCChHHHHHHHHHHHh----------hCCEEEEEEECCCCccccccccchHHHHHH----HHHHH----cC
Confidence 1577899999873 23333444 79999999999863 233222 22211 35
Q ss_pred Cc-EEEEeeCCCccCCCcc----CHHHHHHHH-HHhCC-----eEEEEecCCCCCHH
Q psy5810 154 KA-VILVANKADLERRRQV----THSDGKKLA-YAWGV-----KFVETSVGLVYKTD 199 (250)
Q Consensus 154 ~p-iilv~nK~Dl~~~~~v----~~~~~~~~~-~~~~~-----~~~evSa~~~~~I~ 199 (250)
+| +|+|+||+|+.+...- ...+...+. +..++ +++++||++|.||.
T Consensus 315 ip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 315 ISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp CCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred CCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 55 9999999998642111 122333444 44454 69999999999998
No 188
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.51 E-value=8.5e-14 Score=128.10 Aligned_cols=103 Identities=11% Similarity=0.091 Sum_probs=66.0
Q ss_pred ccEEEEEEEcCCCCchhhhchhhhccccccc----------------c------ccccCce-----------eEEEEEeC
Q psy5810 49 YHHVFFIVHSDTNHTQRCLTSMPFCSQVENF----------------V------QTYHPDV-----------FFIVYSDT 95 (250)
Q Consensus 49 ~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~----------------~------~~~~~~~-----------~~i~i~Dt 95 (250)
.+..+|+|+|.+|+|||||++ +++.....+ . .+.+.++ ..+.+|||
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~-~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDT 89 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITE-KVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDT 89 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHH-HHHHSCC-------------------------------CCTTEEEEEETTEEEEEECC
T ss_pred cCCCEEEEECCCCChHHHHHH-HHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEEC
Confidence 356789999999999999998 776421111 0 0112221 16889999
Q ss_pred CCCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 96 NHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 96 ~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
+|++. .....++. .+|++|+|+|.++...... ..++. .....++|+++++||+|+..
T Consensus 90 PG~~df~~~~~~~l~----------~aD~~IlVvDa~~g~~~~t-~~~~~----~~~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 90 PGHEDFSEDTYRTLT----------AVDCCLMVIDAAKGVEDRT-RKLME----VTRLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCSTTCCHHHHHGGG----------GCSEEEEEEETTTCSCHHH-HHHHH----HHTTTTCCEEEEEECTTSCC
T ss_pred CCChhHHHHHHHHHH----------HCCEEEEEEeCCccchHHH-HHHHH----HHHHcCCCEEEEEcCcCCcc
Confidence 99863 22233344 7999999999998643221 22222 22335789999999999854
No 189
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.49 E-value=1.1e-15 Score=134.11 Aligned_cols=114 Identities=15% Similarity=0.077 Sum_probs=63.8
Q ss_pred EEEEEeCCCCccccC---CC----ccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810 89 FIVYSDTNHTQRCLT---PM----PFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~---~~----~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n 161 (250)
.+.+|||||..+.-. +. .+..+...|.. ..++++++|.|.+....-.....++..+ ...+.|+++|+|
T Consensus 131 ~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iiL~v~~a~~~~~~~~~~~i~~~~----~~~~~~~i~V~N 205 (353)
T 2x2e_A 131 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALKVAKEV----DPQGQRTIGVIT 205 (353)
T ss_dssp SEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHT-STTEEEEEEEETTSCGGGCHHHHHHHHH----CTTCTTEEEEEE
T ss_pred CcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHc-CCCeEEEEEecCCCccchhHHHHHHHHh----CcCCCceEEEec
Confidence 588999999753211 10 12222223332 1345555666665532222222344444 335789999999
Q ss_pred CCCccCCCccCHHHHHH--HHHHhCC-eEEEEecCCCCCHHHHHHHHHH
Q psy5810 162 KADLERRRQVTHSDGKK--LAYAWGV-KFVETSVGLVYKTDELLVGIAR 207 (250)
Q Consensus 162 K~Dl~~~~~v~~~~~~~--~~~~~~~-~~~evSa~~~~~I~~lf~~l~~ 207 (250)
|+|+.+......+.... +....++ +++++||+++.|+.++++.+..
T Consensus 206 K~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 206 KLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp CGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred cccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 99986533211111110 1111233 4688999999999999999876
No 190
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.49 E-value=6.7e-14 Score=132.18 Aligned_cols=101 Identities=10% Similarity=-0.059 Sum_probs=66.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccc--ccc----------------cccCce-----------eEEEEEeCCCCcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN--FVQ----------------TYHPDV-----------FFIVYSDTNHTQR 100 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~--~~~----------------~~~~~~-----------~~i~i~Dt~g~~~ 100 (250)
+..+|+|+|..|+|||||++ ++++.... ... ..+.++ ..+.+|||+|+..
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~-~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTE-ALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHH-HHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHH-HHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 34569999999999999998 77632110 000 001111 1678999999863
Q ss_pred --ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 101 --CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
.....+++ .+|++++|+|.++...... ..|+..+.. .++|+++++||+|+.
T Consensus 87 f~~~~~~~l~----------~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALE----------AADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHH----------HCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHh----------hcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence 22333344 7999999999987654433 344444433 478999999999986
No 191
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.47 E-value=1.1e-13 Score=131.22 Aligned_cols=104 Identities=11% Similarity=-0.064 Sum_probs=70.7
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccccc------------cc------cccCcee-----------EEEEEeCCCC
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVENF------------VQ------TYHPDVF-----------FIVYSDTNHT 98 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~------------~~------~~~~~~~-----------~i~i~Dt~g~ 98 (250)
..+..+|+|+|..|+|||||++ +++.....+ .+ ..+.++. .+.+|||+|+
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~-~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~ 87 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTE-RILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGH 87 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHH-HHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSS
T ss_pred cccccEEEEECCCCCCHHHHHH-HHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCc
Confidence 3456789999999999999998 776311100 00 1222221 6789999998
Q ss_pred cc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 99 QR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 99 ~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
.. ..+..+++ .+|++|+|+|.++..+++....|.. +.+ .++|+++|+||+|+..
T Consensus 88 ~df~~~~~~~l~----------~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 88 VDFTIEVERSMR----------VLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG 143 (691)
T ss_dssp TTCHHHHHHHHH----------HCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred cchHHHHHHHHH----------HCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence 53 22333334 7999999999999888877766654 322 4789999999999853
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.46 E-value=2.3e-14 Score=125.80 Aligned_cols=102 Identities=20% Similarity=0.166 Sum_probs=66.9
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
.+.+|||+|....... ... .+|++++|+|.+..+.++.+.. ...+.|+++|.||+|+.+.
T Consensus 173 ~~iiiDTpGi~~~~~~-~~~----------~aD~vl~V~d~~~~~~~~~l~~---------~~~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 173 DVILIETVGVGQSEVA-VAN----------MVDTFVLLTLARTGDQLQGIKK---------GVLELADIVVVNKADGEHH 232 (355)
T ss_dssp CEEEEEECSCSSHHHH-HHT----------TCSEEEEEEESSTTCTTTTCCT---------TSGGGCSEEEEECCCGGGH
T ss_pred CEEEEeCCCCCcHHHH-HHH----------hCCEEEEEECCCCCccHHHHHH---------hHhhcCCEEEEECCCCcCh
Confidence 6789999994321110 112 7999999999877654433221 1134689999999998542
Q ss_pred CccCHHHHHHHHHH----------hCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 169 RQVTHSDGKKLAYA----------WGVKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 169 ~~v~~~~~~~~~~~----------~~~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
.... ....++... ++.+++++||++|.||+++++++.+.+..
T Consensus 233 ~~~~-~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 233 KEAR-LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp HHHH-HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred hHHH-HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 2211 111222221 25679999999999999999999987765
No 193
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.45 E-value=1.5e-12 Score=114.10 Aligned_cols=135 Identities=13% Similarity=0.085 Sum_probs=85.8
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccc---c-cccccCce------------------------eEEEEEeCCCCcc---
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVEN---F-VQTYHPDV------------------------FFIVYSDTNHTQR--- 100 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~---~-~~~~~~~~------------------------~~i~i~Dt~g~~~--- 100 (250)
++|+|+|.+|||||||+| ++++.... + ..|+.++. ..+++|||+|+.+
T Consensus 3 ~kI~IVG~pnvGKSTL~n-~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~ 81 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFN-ALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGAS 81 (363)
T ss_dssp CEEEEECCTTSSHHHHHH-HHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccccc
Confidence 469999999999999999 78774211 1 11333332 2488999999863
Q ss_pred ---ccCCCccccccccccccCCCcEEEEEEeCCCH----------HhHHHHHHHHHHHH---------------------
Q psy5810 101 ---CLTPMPFCSQVENFVQTYHPDVFVIVYSVIER----------KTFKKAEDMLKTLW--------------------- 146 (250)
Q Consensus 101 ---~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~----------~Sf~~~~~~~~~i~--------------------- 146 (250)
.+...++. . ++++|++++|+|+++. +.++++..|..++.
T Consensus 82 ~~~gl~~~fl~----~---ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g 154 (363)
T 1jal_A 82 KGEGLGNKFLA----N---IRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGG 154 (363)
T ss_dssp HHGGGTCCHHH----H---HHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccchHHHHHHH----H---HHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhcc
Confidence 34433311 0 1289999999999862 23333332222220
Q ss_pred --------------------------------------hhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEE
Q psy5810 147 --------------------------------------DSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFV 188 (250)
Q Consensus 147 --------------------------------------~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~ 188 (250)
.+......|+++++|+.|..-......+...+++...+.+++
T Consensus 155 ~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i 234 (363)
T 1jal_A 155 DKEAKFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVV 234 (363)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEE
T ss_pred chhHHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEE
Confidence 011123489999999999642222345667888888899999
Q ss_pred EEecCC
Q psy5810 189 ETSVGL 194 (250)
Q Consensus 189 evSa~~ 194 (250)
++||+.
T Consensus 235 ~~sA~~ 240 (363)
T 1jal_A 235 PVCAAI 240 (363)
T ss_dssp EECHHH
T ss_pred EechHH
Confidence 999764
No 194
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.40 E-value=1.7e-12 Score=113.64 Aligned_cols=102 Identities=14% Similarity=0.065 Sum_probs=59.4
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
.+.++||+|..... ..... .+|++++|+|.+++...+.+.. .+ -+.|.++|.||+|+.+.
T Consensus 168 ~~iliDT~Gi~~~~-~~l~~----------~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~ 227 (349)
T 2www_A 168 DIILIETVGVGQSE-FAVAD----------MVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLI 227 (349)
T ss_dssp SEEEEECCCC--CH-HHHHT----------TCSEEEEEECCC---------------------CCSCSEEEECCCSGGGH
T ss_pred CEEEEECCCcchhh-hhHHh----------hCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCc
Confidence 57899999953110 01112 7999999999987643322221 12 24578999999998531
Q ss_pred CccCHHHHHHHHH----------HhCCeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 169 RQVTHSDGKKLAY----------AWGVKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 169 ~~v~~~~~~~~~~----------~~~~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
... ......+.. .++.+++.+||++|.|+++++++|.+.+..
T Consensus 228 ~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 228 VPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 111 011122221 124568999999999999999999887643
No 195
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.39 E-value=1.1e-12 Score=124.38 Aligned_cols=102 Identities=10% Similarity=-0.083 Sum_probs=69.0
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccccc------------cc------cccCce-----------eEEEEEeCCCCcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVENF------------VQ------TYHPDV-----------FFIVYSDTNHTQR 100 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~~------------~~------~~~~~~-----------~~i~i~Dt~g~~~ 100 (250)
+..+|+|+|.+|+|||||++ +++.....+ .+ ..+.++ ..+.+|||+|+..
T Consensus 9 ~~~~I~IvG~~~aGKSTL~~-~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~d 87 (693)
T 2xex_A 9 KTRNIGIMAHIDAGKTTTTE-RILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHVD 87 (693)
T ss_dssp TEEEEEEECCGGGTHHHHHH-HHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCSS
T ss_pred cceEEEEECCCCCCHHHHHH-HHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCcc
Confidence 45679999999999999999 776321111 00 011111 1678999999863
Q ss_pred --ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 101 --CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 101 --~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
..+..+++ .+|++|+|+|.++..+++....|.. +.+ .++|+++|+||+|+..
T Consensus 88 f~~~~~~~l~----------~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 88 FTVEVERSLR----------VLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCHHHHHHHH----------HCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred hHHHHHHHHH----------HCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence 22222333 7999999999999877777666643 433 4789999999999853
No 196
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.38 E-value=2.3e-12 Score=122.35 Aligned_cols=102 Identities=12% Similarity=-0.062 Sum_probs=68.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccc------------ccc------cccCce------------------eEEEEE
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN------------FVQ------TYHPDV------------------FFIVYS 93 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~------------~~~------~~~~~~------------------~~i~i~ 93 (250)
+..+|+|+|..|+|||||++ +++..... +.+ ..+.++ ..+.+|
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~-~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTE-RILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred cccEEEEECCCCCCHHHHHH-HHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 34569999999999999998 77532110 000 112222 357799
Q ss_pred eCCCCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 94 DTNHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 94 Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
||+|+.. ..+..+++ .+|++|+|+|.++....+....|.. +.. .++|+++++||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~----------~aD~aIlVvDa~~gv~~qt~~~~~~-~~~----~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMR----------VLDGAVMVYCAVGGVQPQSETVWRQ-ANK----YKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHH----------HCCEEEEEEeCCCCCcHHHHHHHHH-HHH----cCCCEEEEEeCCCccc
Confidence 9999863 23333444 7999999999998776665554532 322 4789999999999843
No 197
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.34 E-value=3e-12 Score=112.59 Aligned_cols=52 Identities=27% Similarity=0.182 Sum_probs=39.4
Q ss_pred CCcEEEEeeCCCcc--CC-CccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHH
Q psy5810 153 EKAVILVANKADLE--RR-RQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVG 204 (250)
Q Consensus 153 ~~piilv~nK~Dl~--~~-~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~lf~~ 204 (250)
..|+++++||.|.. +. +....+...++++..+.+++++||+...++.+++..
T Consensus 201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~ 255 (368)
T 2dby_A 201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE 255 (368)
T ss_dssp GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence 37999999999843 21 124467788889888999999999987777666554
No 198
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.34 E-value=2.2e-12 Score=107.76 Aligned_cols=113 Identities=13% Similarity=-0.072 Sum_probs=66.1
Q ss_pred EEEEEeCCCCccccCCCc-cccccccccccCCCcEEEEEEeCCC---HHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCC
Q psy5810 89 FIVYSDTNHTQRCLTPMP-FCSQVENFVQTYHPDVFVIVYSVIE---RKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD 164 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~-~~~~~~~~~~~~~ad~iilV~D~~~---~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~D 164 (250)
++.+|||+|+........ .....+.+ .+ ++++++.|... +..+.....+...... ..+.|+++|+||+|
T Consensus 110 d~iiiDtpG~~~~~~~~~l~~~~~~~~---~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~---~~~~p~~iv~NK~D 182 (262)
T 1yrb_A 110 DYVLIDTPGQMETFLFHEFGVRLMENL---PY-PLVVYISDPEILKKPNDYCFVRFFALLIDL---RLGATTIPALNKVD 182 (262)
T ss_dssp SEEEEECCSSHHHHHHSHHHHHHHHTS---SS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHH---HHTSCEEEEECCGG
T ss_pred CEEEEeCCCccchhhhhhhHHHHHHHH---hh-ceEEeccchhhhcCHHHHHHHHHHHHHHhc---ccCCCeEEEEeccc
Confidence 688999999863221100 00000011 16 88888888754 3333332222211111 13689999999999
Q ss_pred ccCCCccCHHHHHH----------------------------HHHHhC--CeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 165 LERRRQVTHSDGKK----------------------------LAYAWG--VKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 165 l~~~~~v~~~~~~~----------------------------~~~~~~--~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
+.....+ ++..+ +++.++ .+++++||+++.|++++++++.+.+.
T Consensus 183 ~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 183 LLSEEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp GCCHHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccccccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 8543221 11111 123444 47999999999999999999987664
No 199
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.31 E-value=4.4e-12 Score=108.86 Aligned_cols=85 Identities=18% Similarity=0.065 Sum_probs=71.4
Q ss_pred CCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccC-HHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 119 HPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVT-HSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 119 ~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~-~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
++|++++|+|++++. +++.+..|+..+.. .++|+++|+||+|+.+.+.++ .++..++++..+++++++||++|.
T Consensus 79 naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~ 154 (302)
T 2yv5_A 79 NVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGE 154 (302)
T ss_dssp SCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred hcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 999999999999986 99999999987754 589999999999986543333 455666777789999999999999
Q ss_pred CHHHHHHHHHH
Q psy5810 197 KTDELLVGIAR 207 (250)
Q Consensus 197 ~I~~lf~~l~~ 207 (250)
|+++++..+..
T Consensus 155 gi~~L~~~l~G 165 (302)
T 2yv5_A 155 GIDELVDYLEG 165 (302)
T ss_dssp THHHHHHHTTT
T ss_pred CHHHHHhhccC
Confidence 99999987754
No 200
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.25 E-value=1.5e-12 Score=120.42 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=70.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcccccc---cc---cc-------ccCc------------------------------
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVEN---FV---QT-------YHPD------------------------------ 86 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~~---~~---~~-------~~~~------------------------------ 86 (250)
...+|+|+|.+|||||||+| ++++.... .. .+ ++..
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN-~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQ-YLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHH-HHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred CCcEEEEECCCCCCHHHHHH-HHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 34679999999999999999 78774210 00 00 0000
Q ss_pred -e---------eEEEEEeCCCCccc----cCCCc-cccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCC
Q psy5810 87 -V---------FFIVYSDTNHTQRC----LTPMP-FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI 151 (250)
Q Consensus 87 -~---------~~i~i~Dt~g~~~~----~~~~~-~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~ 151 (250)
. ..+.+|||+|.... +...+ +......+. ..+|++|+|+|.++....+....|+..+.+
T Consensus 143 ~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l--~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---- 216 (550)
T 2qpt_A 143 FMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFA--ERVDLIILLFDAHKLEISDEFSEAIGALRG---- 216 (550)
T ss_dssp EEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHH--HHCSEEEEEEETTSCCCCHHHHHHHHHTTT----
T ss_pred ceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHH--HhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----
Confidence 0 14789999998631 11111 111111222 279999999999886555666677776633
Q ss_pred CCCcEEEEeeCCCccC
Q psy5810 152 GEKAVILVANKADLER 167 (250)
Q Consensus 152 ~~~piilv~nK~Dl~~ 167 (250)
.+.|+++|+||+|+..
T Consensus 217 ~~~pvilVlNK~Dl~~ 232 (550)
T 2qpt_A 217 HEDKIRVVLNKADMVE 232 (550)
T ss_dssp CGGGEEEEEECGGGSC
T ss_pred cCCCEEEEEECCCccC
Confidence 4689999999999864
No 201
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.25 E-value=1.2e-11 Score=107.95 Aligned_cols=102 Identities=17% Similarity=0.030 Sum_probs=61.4
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
.+.+|||+|...... .... .+|++++|+|.+....++.+.. .. .+.|.++|+||+|+.+.
T Consensus 150 ~i~liDTpG~~~~~~-~~~~----------~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 150 DVVIVETVGVGQSET-EVAR----------MVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNH 209 (341)
T ss_dssp SEEEEEEECCTTHHH-HHHT----------TCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCH
T ss_pred CEEEEeCCCccchHH-HHHH----------hCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCCh
Confidence 688999999542111 1122 7999999999976543221111 11 14678999999998642
Q ss_pred CccCH--HHHHHHHHHh-------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 169 RQVTH--SDGKKLAYAW-------GVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 169 ~~v~~--~~~~~~~~~~-------~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
..+.. ++........ ..+++++||++|.|++++++++.+.+.
T Consensus 210 ~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 210 TNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 21111 1122111121 346899999999999999999998765
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.24 E-value=2.2e-11 Score=106.02 Aligned_cols=102 Identities=16% Similarity=0.044 Sum_probs=60.5
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
.+.++||+|..+... .... .+|.+++|+|....+..+.+..++. +.|.+++.||+|+...
T Consensus 149 ~~iliDT~Gi~~~~~-~v~~----------~~d~vl~v~d~~~~~~~~~i~~~i~---------~~~~ivvlNK~Dl~~~ 208 (337)
T 2qm8_A 149 DVILVETVGVGQSET-AVAD----------LTDFFLVLMLPGAGDELQGIKKGIF---------ELADMIAVNKADDGDG 208 (337)
T ss_dssp CEEEEEECSSSSCHH-HHHT----------TSSEEEEEECSCC------CCTTHH---------HHCSEEEEECCSTTCC
T ss_pred CEEEEECCCCCcchh-hHHh----------hCCEEEEEEcCCCcccHHHHHHHHh---------ccccEEEEEchhccCc
Confidence 678899999642210 0112 7899999999875433222211111 2355667799996432
Q ss_pred CccCHHHHHHHHHHh----------CCeEEEEecCCCCCHHHHHHHHHHHHH
Q psy5810 169 RQVTHSDGKKLAYAW----------GVKFVETSVGLVYKTDELLVGIARQAG 210 (250)
Q Consensus 169 ~~v~~~~~~~~~~~~----------~~~~~evSa~~~~~I~~lf~~l~~~i~ 210 (250)
...+......+.... ..+++.+||+++.|++++++.+.+.+.
T Consensus 209 ~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 209 ERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222222233333321 346889999999999999999987654
No 203
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.19 E-value=1.7e-11 Score=118.46 Aligned_cols=112 Identities=19% Similarity=0.201 Sum_probs=75.3
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhccccc----------cccc----------cccCc---------------------
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCSQVE----------NFVQ----------TYHPD--------------------- 86 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~~~~----------~~~~----------~~~~~--------------------- 86 (250)
..+..+|+|+|..|+|||||++ +++.... .+.+ |+...
T Consensus 16 ~~~~rnI~IiG~~~~GKTTL~~-~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~ 94 (842)
T 1n0u_A 16 VTNVRNMSVIAHVDHGKSTLTD-SLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTD 94 (842)
T ss_dssp GGGEEEEEEECCGGGTHHHHHH-HHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCC
T ss_pred cccccEEEEECCCCCCHHHHHH-HHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEeccccccccccccccc
Confidence 3456789999999999999998 6765211 1110 11110
Q ss_pred --eeEEEEEeCCCCcc--ccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeC
Q psy5810 87 --VFFIVYSDTNHTQR--CLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANK 162 (250)
Q Consensus 87 --~~~i~i~Dt~g~~~--~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK 162 (250)
-..+.+|||+|+.. ..+..+++ .+|++|+|+|+++..+++....|.... . .++|+++++||
T Consensus 95 ~~~~~i~liDTPG~~df~~~~~~~l~----------~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK 159 (842)
T 1n0u_A 95 GNSFLINLIDSPGHVDFSSEVTAALR----------VTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINK 159 (842)
T ss_dssp SSEEEEEEECCCCCCSSCHHHHHHHH----------TCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEEC
T ss_pred CCCceEEEEECcCchhhHHHHHHHHH----------hCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEEC
Confidence 23578999999863 22333444 899999999999998888776665432 2 47899999999
Q ss_pred CCccC-CCccCHHH
Q psy5810 163 ADLER-RRQVTHSD 175 (250)
Q Consensus 163 ~Dl~~-~~~v~~~~ 175 (250)
+|+.. +..++.++
T Consensus 160 ~D~~~~e~~~~~~e 173 (842)
T 1n0u_A 160 VDRALLELQVSKED 173 (842)
T ss_dssp HHHHHHTSCCCHHH
T ss_pred CCcchhhhccCHHH
Confidence 99852 23344443
No 204
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.11 E-value=2.3e-11 Score=115.42 Aligned_cols=115 Identities=15% Similarity=0.107 Sum_probs=69.3
Q ss_pred EEEEEeCCCCccccC---C----CccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEee
Q psy5810 89 FIVYSDTNHTQRCLT---P----MPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVAN 161 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~---~----~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~n 161 (250)
.+.++||||-..... + .........|.. ..+|++++|.|.++...-.+...++..+ ...+.|+++|.|
T Consensus 151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~-~~aDlIL~VVDAs~~~~~~d~l~ll~~L----~~~g~pvIlVlN 225 (772)
T 3zvr_A 151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT-KENCLILAVSPANSDLANSDALKIAKEV----DPQGQRTIGVIT 225 (772)
T ss_dssp SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT-STTEEEEEEEETTSCSSSCHHHHHHHHH----CTTCSSEEEEEE
T ss_pred ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh-cCCcEEEEEEcCCCCcchhHHHHHHHHH----HhcCCCEEEEEe
Confidence 467899999754211 1 111222333332 3789999999998754333333344444 235789999999
Q ss_pred CCCccCCCccCHHHHHH--HHHHhC-CeEEEEecCCCCCHHHHHHHHHHH
Q psy5810 162 KADLERRRQVTHSDGKK--LAYAWG-VKFVETSVGLVYKTDELLVGIARQ 208 (250)
Q Consensus 162 K~Dl~~~~~v~~~~~~~--~~~~~~-~~~~evSa~~~~~I~~lf~~l~~~ 208 (250)
|+|+............. +....+ .+++.+||++|.|++++++.+...
T Consensus 226 KiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 226 KLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp CTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred CcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 99986433322211110 000113 246789999999999999988863
No 205
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.08 E-value=3.7e-11 Score=96.78 Aligned_cols=105 Identities=8% Similarity=-0.090 Sum_probs=70.5
Q ss_pred CCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHH---Hhhh-CCCCCcEEEEeeCC-CccC
Q psy5810 95 TNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTL---WDSK-YIGEKAVILVANKA-DLER 167 (250)
Q Consensus 95 t~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i---~~~~-~~~~~piilv~nK~-Dl~~ 167 (250)
.+||. +.+|..||. ++|++|+|.|.+|.+-++ .+..+.++ .... ...++|++|++||. |++.
T Consensus 109 ~GGQ~klRplWr~Yy~----------~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~ 177 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCE----------VVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 177 (227)
T ss_dssp --------CCHHHHHH----------HCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred cCcHHHHHHHHHHHhc----------CCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence 34676 888999999 899999999999985443 33333222 2221 12578999999995 6754
Q ss_pred CCccCHHHHHHHHH----HhCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 168 RRQVTHSDGKKLAY----AWGVKFVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 168 ~~~v~~~~~~~~~~----~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
.++..+..+... ...|.+..|||++|+|+.+.++||.+.+..+
T Consensus 178 --Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 178 --RMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp --BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred --CCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 455555443321 2356689999999999999999999776544
No 206
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.07 E-value=6.6e-10 Score=97.78 Aligned_cols=146 Identities=9% Similarity=-0.045 Sum_probs=85.2
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccccc----ccccCcee-------EEEEEeCCCCcccc--CCCccccccccccccC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVENFV----QTYHPDVF-------FIVYSDTNHTQRCL--TPMPFCSQVENFVQTY 118 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~~~----~~~~~~~~-------~i~i~Dt~g~~~~~--~~~~~~~~~~~~~~~~ 118 (250)
..|+|+|.||||||||+| ++++...... .|..+..+ .+++.||||-.+.- .....+...+ .++
T Consensus 73 a~V~ivG~PNvGKSTL~n-~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~---~i~ 148 (376)
T 4a9a_A 73 ASVGFVGFPSVGKSTLLS-KLTGTESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIA---VAR 148 (376)
T ss_dssp EEEEEECCCCHHHHHHHH-HHHSBCCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHH---HHH
T ss_pred CeEEEECCCCCCHHHHHH-HHhCCCCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHH---HHH
Confidence 459999999999999999 8888532222 22223222 67899999964221 1111111111 223
Q ss_pred CCcEEEEEEeCCCHHh-HHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC--------CCccCHHHHHHHHHHhCCeEEE
Q psy5810 119 HPDVFVIVYSVIERKT-FKKAEDMLKTLWDSKYIGEKAVILVANKADLER--------RRQVTHSDGKKLAYAWGVKFVE 189 (250)
Q Consensus 119 ~ad~iilV~D~~~~~S-f~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~--------~~~v~~~~~~~~~~~~~~~~~e 189 (250)
.+|++++|.|.+++.. ++.+...+.... ......|.+++.||.|... ...++.++...+...+.+.--+
T Consensus 149 ~ad~il~vvD~~~p~~~~~~i~~EL~~~~--~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kp 226 (376)
T 4a9a_A 149 TCNLLFIILDVNKPLHHKQIIEKELEGVG--IRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAE 226 (376)
T ss_dssp HCSEEEEEEETTSHHHHHHHHHHHHHHTT--EEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEE
T ss_pred hcCccccccccCccHHHHHHHHHHHHHhh--HhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCC
Confidence 7999999999999743 232333332221 1224678888999999632 2245677777777666654333
Q ss_pred EecCCCCCHHHHHH
Q psy5810 190 TSVGLVYKTDELLV 203 (250)
Q Consensus 190 vSa~~~~~I~~lf~ 203 (250)
+-...+...+++.+
T Consensus 227 v~~~~nv~eddl~d 240 (376)
T 4a9a_A 227 IAFRCDATVDDLID 240 (376)
T ss_dssp EEECSCCCHHHHHH
T ss_pred eeecccCCHHHHHH
Confidence 33334445555443
No 207
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.92 E-value=5.9e-10 Score=93.97 Aligned_cols=105 Identities=8% Similarity=-0.091 Sum_probs=71.3
Q ss_pred CCCCc--cccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHH---HHHhhh-CCCCCcEEEEeeC-CCccC
Q psy5810 95 TNHTQ--RCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLK---TLWDSK-YIGEKAVILVANK-ADLER 167 (250)
Q Consensus 95 t~g~~--~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~---~i~~~~-~~~~~piilv~nK-~Dl~~ 167 (250)
.+||. +.+|..||. ++|++|+|.|.+|++-++ ....+. .+.... ...++|++|.+|| .|+++
T Consensus 194 ~GGQ~~lRplWr~Yy~----------~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCE----------VVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp ---CCCCCHHHHHHHH----------HCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred CCCHHHHHHHHHHHhc----------CCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 35665 788888998 899999999999986543 222222 222221 1368999999996 58854
Q ss_pred CCccCHHHHHHHHH----HhCCeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 168 RRQVTHSDGKKLAY----AWGVKFVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 168 ~~~v~~~~~~~~~~----~~~~~~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
.++..+..+... ...+.+..|||++|+|+.+.++||.+.+..+
T Consensus 263 --Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 263 --RMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp --BCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred --CCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 445554433221 2346689999999999999999999877544
No 208
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.70 E-value=1.7e-08 Score=88.82 Aligned_cols=108 Identities=22% Similarity=0.220 Sum_probs=73.3
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH----HHHhCC---eEEEEe
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL----AYAWGV---KFVETS 191 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~---~~~evS 191 (250)
.++++++|+|++++. ..|..++.+.. .+.|+++|+||+|+.+. ....++..++ ++..|+ +++++|
T Consensus 69 ~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 140 (368)
T 3h2y_A 69 SDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLKPEDVFLIS 140 (368)
T ss_dssp SCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCCCSEEEECC
T ss_pred cCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCCcccEEEEe
Confidence 788999999999864 45666665542 47899999999998543 3334444444 666787 799999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810 192 VGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF 236 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (250)
|++|.|++++++.+.+..... ....-.......++.++.+.++
T Consensus 141 A~~g~gi~~L~~~l~~~~~~~--~i~~vG~~nvGKStliN~L~~~ 183 (368)
T 3h2y_A 141 AAKGQGIAELADAIEYYRGGK--DVYVVGCTNVGKSTFINRMIKE 183 (368)
T ss_dssp TTTCTTHHHHHHHHHHHHTTS--CEEEEEBTTSSHHHHHHHHHHH
T ss_pred CCCCcCHHHHHhhhhhhcccc--eEEEecCCCCChhHHHHHHHhh
Confidence 999999999999987643211 0000111113556777777765
No 209
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.70 E-value=5.4e-08 Score=89.85 Aligned_cols=102 Identities=16% Similarity=0.045 Sum_probs=62.9
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccc----------------ccc------cccCcee-----------EEEEEeCCCC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVEN----------------FVQ------TYHPDVF-----------FIVYSDTNHT 98 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~----------------~~~------~~~~~~~-----------~i~i~Dt~g~ 98 (250)
=.|+|+|..++|||||.. +++...+. +.+ .-|.++. .+.+.||||.
T Consensus 32 RNiaIiaHvdaGKTTLtE-~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH 110 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTE-KLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH 110 (548)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred ceEEEEeCCCCCHHHHHH-HHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence 349999999999999998 55421110 111 0111111 6789999996
Q ss_pred ccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccC
Q psy5810 99 QRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167 (250)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 167 (250)
..... |...+++-+|++|+|+|....-.-+....|. ...+ .++|.+++.||.|...
T Consensus 111 vDF~~--------Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~-~a~~----~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 111 QDFSE--------DTYRVLTAVDSALVVIDAAKGVEAQTRKLMD-VCRM----RATPVMTFVNKMDREA 166 (548)
T ss_dssp GGCSH--------HHHHHHHSCSEEEEEEETTTBSCHHHHHHHH-HHHH----TTCCEEEEEECTTSCC
T ss_pred HHHHH--------HHHHHHHhcCceEEEeecCCCcccccHHHHH-HHHH----hCCceEEEEecccchh
Confidence 42111 1112222689999999998864444444452 2323 5899999999999743
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.68 E-value=3.6e-07 Score=80.79 Aligned_cols=42 Identities=19% Similarity=0.163 Sum_probs=30.0
Q ss_pred CCcEEEEeeCCCccC--CCccCHHHHHHHHHHhC--CeEEEEecCC
Q psy5810 153 EKAVILVANKADLER--RRQVTHSDGKKLAYAWG--VKFVETSVGL 194 (250)
Q Consensus 153 ~~piilv~nK~Dl~~--~~~v~~~~~~~~~~~~~--~~~~evSa~~ 194 (250)
..|++.++|+.|..- ...--.+...+++.+.+ .+++.+||+.
T Consensus 224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 379999999998421 11122566778887776 7899999986
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.65 E-value=7.6e-09 Score=91.48 Aligned_cols=80 Identities=9% Similarity=-0.047 Sum_probs=40.8
Q ss_pred EEEEEEcCCCCchhhhchhhhcccccc----ccccccCcee------------------------EEEEEeCCCCccccC
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVEN----FVQTYHPDVF------------------------FIVYSDTNHTQRCLT 103 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~~----~~~~~~~~~~------------------------~i~i~Dt~g~~~~~~ 103 (250)
++|+|+|.+|||||||+| ++++.... ...|..+..+ .+++|||+|..+...
T Consensus 23 ~kvgIVG~pnvGKSTL~n-~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as 101 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFN-VLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAH 101 (396)
T ss_dssp CCEEEECCSSSSHHHHHH-HHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC------
T ss_pred CEEEEECCCCCCHHHHHH-HHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccc
Confidence 459999999999999998 78874111 0112222221 388999999863221
Q ss_pred C--CccccccccccccCCCcEEEEEEeCCCHHhH
Q psy5810 104 P--MPFCSQVENFVQTYHPDVFVIVYSVIERKTF 135 (250)
Q Consensus 104 ~--~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf 135 (250)
. ..-..... .++++|++++|+|.++.+++
T Consensus 102 ~~~glg~~~l~---~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 102 NGQGLGNAFLS---HISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp -----CCHHHH---HHHTSSSEEEEEEC------
T ss_pred hhhHHHHHHHH---HHHhcCeEEEEEecCCCcch
Confidence 1 00000011 11289999999999875543
No 212
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.43 E-value=1.5e-07 Score=88.38 Aligned_cols=99 Identities=14% Similarity=0.028 Sum_probs=60.4
Q ss_pred EEEEcCCCCchhhhchhhhcccccc------------cccc------ccCcee-----------EEEEEeCCCCccccCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVEN------------FVQT------YHPDVF-----------FIVYSDTNHTQRCLTP 104 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~------------~~~~------~~~~~~-----------~i~i~Dt~g~~~~~~~ 104 (250)
|+|+|.-++|||||.. +++...+. +.+. -|.|+. .+.+.||||.....
T Consensus 5 i~IiaHvD~GKTTL~e-~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~-- 81 (638)
T 3j25_A 5 IGVLAHVDAGKTTLTE-SLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFL-- 81 (638)
T ss_dssp CEEECCSTTSSHHHHH-HHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTH--
T ss_pred EEEEcCCCCCHHHHHH-HHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHH--
Confidence 8999999999999998 55432111 0000 011111 67789999964211
Q ss_pred CccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 105 MPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 105 ~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
.|...+++-+|++|+|+|....-.-+....|. ...+ .++|.+++.||.|..
T Consensus 82 ------~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~----~~lp~i~~INKmDr~ 132 (638)
T 3j25_A 82 ------AEVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRK----MGIPTIFFINKIDQN 132 (638)
T ss_dssp ------HHHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHH----HTCSCEECCEECCSS
T ss_pred ------HHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCeEEEEeccccc
Confidence 11122223689999999998753333323332 2333 378999999999974
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.38 E-value=5.8e-07 Score=78.99 Aligned_cols=108 Identities=18% Similarity=0.173 Sum_probs=72.1
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH----HHHhCC---eEEEEe
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL----AYAWGV---KFVETS 191 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~----~~~~~~---~~~evS 191 (250)
+++++++|+|++++.+ .|..++.+.. .+.|+++|+||+|+.+. ....+...++ ++..|+ .++++|
T Consensus 71 ~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iS 142 (369)
T 3ec1_A 71 SKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLCPVDVCLVS 142 (369)
T ss_dssp HCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCCCSEEEECB
T ss_pred cCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 6899999999999774 4555554432 47899999999998642 2333444443 566676 689999
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhcc
Q psy5810 192 VGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQF 236 (250)
Q Consensus 192 a~~~~~I~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (250)
|++|.|++++++.+.+..... ....-.......++.++.+.+.
T Consensus 143 A~~g~gi~~L~~~I~~~~~~~--~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 143 AAKGIGMAKVMEAINRYREGG--DVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTTTBTHHHHHHHHHHHHTTS--CEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhhcccC--cEEEEcCCCCchHHHHHHHHhh
Confidence 999999999999887654211 0000111123556777777665
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.29 E-value=5.9e-07 Score=81.91 Aligned_cols=106 Identities=16% Similarity=0.075 Sum_probs=59.8
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcE-EEEeeCCCccC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLER 167 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~ 167 (250)
++.++||+|...... ..... ......+..+|.+++|.|.+..... + .....+.. ..|+ ++|.||.|...
T Consensus 185 DvvIIDTpG~~~~~~-~l~~e-l~~~~~~i~pd~vllVvDa~~g~~~--~-~~a~~~~~-----~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 185 EIIIVDTSGRHKQED-SLFEE-MLQVANAIQPDNIVYVMDASIGQAC--E-AQAKAFKD-----KVDVASVIVTKLDGHA 254 (504)
T ss_dssp CEEEEEECCCCTTCH-HHHHH-HHHHHHHHCCSEEEEEEETTCCTTH--H-HHHHHHHH-----HHCCCCEEEECTTSCC
T ss_pred cEEEEeCCCCcccch-hHHHH-HHHHHhhhcCceEEEEEeccccccH--H-HHHHHHHh-----hcCceEEEEeCCcccc
Confidence 688999999753110 00000 0000001168999999999875431 1 12222321 2564 88899999753
Q ss_pred CCccCHHHHHHHHHHhCCeE------------------EEEecCCCCC-HHHHHHHHHHH
Q psy5810 168 RRQVTHSDGKKLAYAWGVKF------------------VETSVGLVYK-TDELLVGIARQ 208 (250)
Q Consensus 168 ~~~v~~~~~~~~~~~~~~~~------------------~evSa~~~~~-I~~lf~~l~~~ 208 (250)
... .+.......+.|+ ..+|+..|.| +.++++++.+.
T Consensus 255 ~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 255 KGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred chH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 221 1223334555553 3468899988 98888888754
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.28 E-value=6.2e-08 Score=85.23 Aligned_cols=138 Identities=10% Similarity=-0.057 Sum_probs=74.3
Q ss_pred EEEEEcCCCCchhhhchhhhccc------cccccccccCcee--------EEEEEeCCCCccc--cCCCccccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQ------VENFVQTYHPDVF--------FIVYSDTNHTQRC--LTPMPFCSQVENFVQ 116 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~------~~~~~~~~~~~~~--------~i~i~Dt~g~~~~--~~~~~~~~~~~~~~~ 116 (250)
+|+++|.+|||||||+| .+.+. ........+.|.. .+.++||||-... +....-.........
T Consensus 164 ~i~~vG~~nvGKStliN-~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~~ 242 (369)
T 3ec1_A 164 DVYVVGCTNVGKSTFIN-RIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHFVDARDLKIITP 242 (369)
T ss_dssp CEEEECCTTSSHHHHHH-HHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGGSCTTTHHHHSC
T ss_pred cEEEEcCCCCchHHHHH-HHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHHHhHHHHHHHhc
Confidence 49999999999999999 77663 1111112222222 3568999996421 111111111112211
Q ss_pred cCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 117 ~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
.+..+.++++.|.....-+..+.. +. .....+.|++++.||.|....... ......+.+..|......++.+..
T Consensus 243 ~~~i~~~~~~l~~~~~~~~g~l~~-l~----~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~~~~ 316 (369)
T 3ec1_A 243 KREIHPRVYQLNEGQTLFFGGLAR-LD----YIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKRYAA 316 (369)
T ss_dssp SSCCCCEEEEECTTEEEEETTTEE-EE----EEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGGGTT
T ss_pred ccccCceEEEEcCCceEEECCEEE-EE----EccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCchhhh
Confidence 237899999998743211111110 11 112346899999999997542222 233344556667666666655544
Q ss_pred C
Q psy5810 197 K 197 (250)
Q Consensus 197 ~ 197 (250)
+
T Consensus 317 ~ 317 (369)
T 3ec1_A 317 E 317 (369)
T ss_dssp T
T ss_pred h
Confidence 3
No 216
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.27 E-value=1e-06 Score=74.52 Aligned_cols=109 Identities=14% Similarity=0.053 Sum_probs=74.0
Q ss_pred CCcEEEEEEeCCCHHhHH--HHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCC
Q psy5810 119 HPDVFVIVYSVIERKTFK--KAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVY 196 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~--~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~ 196 (250)
.+|+++.|+|+.++.+.. .+.+|+ .+.|.++|.||+|+.+... .+...++.++.+++++++||+++.
T Consensus 23 ~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~~i~iSA~~~~ 91 (282)
T 1puj_A 23 LIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSVNGQ 91 (282)
T ss_dssp GCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTTTCT
T ss_pred hCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHH--HHHHHHHHHhcCCcEEEEECCCcc
Confidence 799999999999988764 344332 4789999999999864211 122233444557899999999999
Q ss_pred CHHHHHHHHHHHHHhhhhhhhHH------------HHHhhhhhhhhhhhhccCC
Q psy5810 197 KTDELLVGIARQAGLNKKRNKLL------------AKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 197 ~I~~lf~~l~~~i~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 238 (250)
|+.+++..+.+.+.......... .......+++++.+.+++.
T Consensus 92 gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 92 GLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEEEecCCCchHHHHHHHhcCce
Confidence 99999998877665432110000 0011367788888887764
No 217
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.20 E-value=5.9e-06 Score=78.52 Aligned_cols=100 Identities=12% Similarity=-0.032 Sum_probs=59.6
Q ss_pred EEEEEcCCCCchhhhchhhhcccccc------------ccc------cccCce------------------eEEEEEeCC
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQVEN------------FVQ------TYHPDV------------------FFIVYSDTN 96 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~~~------------~~~------~~~~~~------------------~~i~i~Dt~ 96 (250)
.|+|+|.-++|||||.. +++...+. +.+ .-|.|+ ..+.+.|||
T Consensus 15 Ni~IiaHvd~GKTTL~d-~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTP 93 (709)
T 4fn5_A 15 NIGICAHVDAGKTTTTE-RVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTP 93 (709)
T ss_dssp EEEEECCSSSCHHHHHH-HHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEECCC
T ss_pred EEEEEcCCCCCHHHHHH-HHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCC
Confidence 39999999999999998 55432110 100 001111 147788999
Q ss_pred CCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc
Q psy5810 97 HTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166 (250)
Q Consensus 97 g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~ 166 (250)
|.-. |. .|...+++-+|++|+|+|....-.-+...-|.. ..+ .++|.+++.||.|..
T Consensus 94 GHvD------F~--~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~----~~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 94 GHVD------FT--IEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANK----YGVPRIVYVNKMDRQ 150 (709)
T ss_dssp SCTT------CH--HHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----HTCCEEEEEECSSST
T ss_pred CCcc------cH--HHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHH----cCCCeEEEEcccccc
Confidence 8631 11 111122225899999999987543333333333 333 379999999999973
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.13 E-value=1e-05 Score=68.00 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=19.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|+|++|+|||||++ .+.+
T Consensus 3 f~v~lvG~nGaGKSTLln-~L~g 24 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVN-TLFK 24 (270)
T ss_dssp EEEEEEESSSSSHHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHhC
Confidence 569999999999999998 6655
No 219
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.13 E-value=6.7e-08 Score=84.96 Aligned_cols=133 Identities=9% Similarity=-0.074 Sum_probs=67.9
Q ss_pred EEEEEcCCCCchhhhchhhhcccc-----cc--ccccccCcee--------EEEEEeCCCCccc--cCCCcccccccccc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCSQV-----EN--FVQTYHPDVF--------FIVYSDTNHTQRC--LTPMPFCSQVENFV 115 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~~~-----~~--~~~~~~~~~~--------~i~i~Dt~g~~~~--~~~~~~~~~~~~~~ 115 (250)
+|+++|.+|||||||+| .+.+.. .. .....+.|.. .+.++||||-... +....-........
T Consensus 162 ~i~~vG~~nvGKStliN-~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 240 (368)
T 3h2y_A 162 DVYVVGCTNVGKSTFIN-RMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMAHYVGKQSLKLIT 240 (368)
T ss_dssp CEEEEEBTTSSHHHHHH-HHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGGGGSCHHHHHHHS
T ss_pred eEEEecCCCCChhHHHH-HHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHHHHhhHHHHHHhc
Confidence 49999999999999999 776631 01 1111122221 3578999996421 11111111111112
Q ss_pred ccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 116 QTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 116 ~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
.....+.+++++|.....-+..+.. +. .....+.|++++.||.|....... ......+.+..|..++..++
T Consensus 241 ~~~~i~~~~~~l~~~~~~~~g~l~~-~d----~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~ 311 (368)
T 3h2y_A 241 PTKEIKPMVFQLNEEQTLFFSGLAR-FD----YVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPTP 311 (368)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEE-EE----EEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSCH
T ss_pred cccccCceEEEEcCCCEEEEcceEE-EE----EecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCch
Confidence 2236788888887632211111110 11 112346899999999997542222 22333445555655444443
No 220
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.05 E-value=2.4e-05 Score=69.55 Aligned_cols=149 Identities=15% Similarity=0.152 Sum_probs=80.0
Q ss_pred EEEEEEcCCCCchhhhchhhhccc----ccc--ccc-c-----c---cCceeEEEEEeCCCCccccCCCccccccccccc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQ----VEN--FVQ-T-----Y---HPDVFFIVYSDTNHTQRCLTPMPFCSQVENFVQ 116 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~----~~~--~~~-~-----~---~~~~~~i~i~Dt~g~~~~~~~~~~~~~~~~~~~ 116 (250)
..++|+|++|||||||+| .+.+- .+. +.. . + .+....+.+||++|-... ........+. ..
T Consensus 70 ~~valvG~nGaGKSTLln-~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~--~~~~~~~L~~-~~ 145 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFIN-TLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST--NFPPDTYLEK-MK 145 (413)
T ss_dssp EEEEEEECTTSSHHHHHH-HHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGS--SCCHHHHHHH-TT
T ss_pred eEEEEECCCCCcHHHHHH-HHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccch--HHHHHHHHHH-cC
Confidence 359999999999999998 77662 110 000 0 0 011124677888874311 0000100110 01
Q ss_pred cCCCcEEEEEEeCC--CHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCcc-------CCCccCHHHH----HHHH---
Q psy5810 117 TYHPDVFVIVYSVI--ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE-------RRRQVTHSDG----KKLA--- 180 (250)
Q Consensus 117 ~~~ad~iilV~D~~--~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~-------~~~~v~~~~~----~~~~--- 180 (250)
+.+.+..++ +|.. .+.... +...+.. .+.|+++|.||.|+. .-.....++. .+++
T Consensus 146 L~~~~~~~~-lS~G~~~kqrv~----la~aL~~----~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~ 216 (413)
T 1tq4_A 146 FYEYDFFII-ISATRFKKNDID----IAKAISM----MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNT 216 (413)
T ss_dssp GGGCSEEEE-EESSCCCHHHHH----HHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCccCCeEE-eCCCCccHHHHH----HHHHHHh----cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 113455554 7776 332221 2222222 367999999999962 1111223333 2332
Q ss_pred -HHhC---CeEEEEec--CCCCCHHHHHHHHHHHHHhhh
Q psy5810 181 -YAWG---VKFVETSV--GLVYKTDELLVGIARQAGLNK 213 (250)
Q Consensus 181 -~~~~---~~~~evSa--~~~~~I~~lf~~l~~~i~~~~ 213 (250)
.+.+ -..+.+|+ ..+.|++++.+.+...+.+..
T Consensus 217 l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 217 FRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 1222 24788999 777789999999998876654
No 221
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.94 E-value=2.3e-06 Score=71.63 Aligned_cols=47 Identities=6% Similarity=-0.118 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCchhhhchhhhccccc-cccccccCcee--------EEEEEeCCCCc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDVF--------FIVYSDTNHTQ 99 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~~--------~i~i~Dt~g~~ 99 (250)
++++++|.+|||||||+| ++.+... ....+.+.+.. .+++|||+|..
T Consensus 100 ~~v~~vG~~~vGKSslin-~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIIN-KLKGKRASSVGAQPGITKGIQWFSLENGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHH-HHHTTCC----------CCSCEEECTTSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHH-HHhcccccccCCCCCCccceEEEEeCCCEEEEECCCcc
Confidence 579999999999999999 7776421 11222222211 56899999975
No 222
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.93 E-value=2.7e-05 Score=69.44 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=20.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~ 75 (250)
..++++|+|++|+|||||++ .+.+.
T Consensus 41 ei~~vaLvG~nGaGKSTLln-~L~G~ 65 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMD-TLFNT 65 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHH-HHHTS
T ss_pred CeeEEEEECCCCCCHHHHHH-HHhCc
Confidence 34569999999999999998 67663
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.91 E-value=5.9e-06 Score=69.89 Aligned_cols=49 Identities=8% Similarity=-0.099 Sum_probs=31.4
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccccc-cccccccCce--------eEEEEEeCCCCc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDV--------FFIVYSDTNHTQ 99 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~--------~~i~i~Dt~g~~ 99 (250)
..++++++|.+|||||||+| ++.+... ......+.|. ..+.+|||||-.
T Consensus 119 ~~~~v~~vG~~nvGKSsliN-~l~~~~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~ 176 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLIN-RLAKKNIAKTGDRPGITTSQQWVKVGKELELLDTPGIL 176 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHH-HHHTSCCC------------CCEEETTTEEEEECCCCC
T ss_pred CCceEEEEecCCCchHHHHH-HHhcCceeecCCCCCeeeeeEEEEeCCCEEEEECcCcC
Confidence 45779999999999999999 7776421 1111112221 157899999974
No 224
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.83 E-value=3e-05 Score=69.42 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=51.9
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
++.+.||+|....... .........++..+|.+++|.|.+....-.. ....+.+ .-.+..+|.||.|....
T Consensus 184 DvVIIDTaGrl~~d~~--lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~---~a~~f~~----~~~i~gVIlTKlD~~~~ 254 (443)
T 3dm5_A 184 DIIIVDTAGRHKEDKA--LIEEMKQISNVIHPHEVILVIDGTIGQQAYN---QALAFKE----ATPIGSIIVTKLDGSAK 254 (443)
T ss_dssp SEEEEECCCCSSCCHH--HHHHHHHHHHHHCCSEEEEEEEGGGGGGHHH---HHHHHHH----SCTTEEEEEECCSSCSS
T ss_pred CEEEEECCCcccchHH--HHHHHHHHHHhhcCceEEEEEeCCCchhHHH---HHHHHHh----hCCCeEEEEECCCCccc
Confidence 6778999985321100 0000111111125799999999876533222 2223321 12356788899997531
Q ss_pred CccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 169 RQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 169 ~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
...+.......+.|+..++. |+++
T Consensus 255 ----gG~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 255 ----GGGALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp ----HHHHHHHHHTTCCCEEEEEC--SSST
T ss_pred ----ccHHHHHHHHHCCCEEEEEc--CCCh
Confidence 23345556677889877775 5554
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.80 E-value=2.6e-05 Score=69.68 Aligned_cols=97 Identities=11% Similarity=0.060 Sum_probs=53.6
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERR 168 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 168 (250)
++.+.||+|.........+........++..++.+++|.|.+....-.. ....+.+. -.+..+|.||.|...
T Consensus 181 DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~---~a~~f~~~----~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 181 DIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYD---LASRFHQA----SPIGSVIITKMDGTA- 252 (433)
T ss_dssp SEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHH---HHHHHHHH----CSSEEEEEECGGGCS-
T ss_pred CEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHH---HHHHHhcc----cCCcEEEEecccccc-
Confidence 5678999985321011111111111111125799999999986533222 22333221 235778899999753
Q ss_pred CccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 169 RQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 169 ~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
....+.......+.|+..++. |+++
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred ---cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 223455566678999877775 6554
No 226
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.74 E-value=1.3e-05 Score=67.11 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=65.7
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
++|+++.|+|+.++.+..... +. + . +.|.++|.||+|+.+... .++..++.++.|.++ .+||+++.|+
T Consensus 21 ~~D~vl~VvDar~P~~~~~~~--l~-l-----l-~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~~gi 88 (262)
T 3cnl_A 21 LVNTVVEVRDARAPFATSAYG--VD-F-----S-RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGEPRK 88 (262)
T ss_dssp TCSEEEEEEETTSTTTTSCTT--SC-C-----T-TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTSCHH
T ss_pred hCCEEEEEeeCCCCCcCcChH--HH-h-----c-CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCCcCH
Confidence 899999999999987664311 11 1 1 789999999999864211 122233445567888 9999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHHhhhhhhhhhhhhccCC
Q psy5810 199 DELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQFKW 238 (250)
Q Consensus 199 ~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (250)
++++..+...+. ..-.-.......+++++.+.+++.
T Consensus 89 ~~L~~~l~~~~~----~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 89 VLLKKLSFDRLA----RVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp HHHHHHCCCTTC----EEEEEESTTSSHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhhh----heEEeCCCCCCHHHHHHHHhcccc
Confidence 998877654320 000000111345666777666554
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.74 E-value=1.4e-05 Score=68.37 Aligned_cols=83 Identities=16% Similarity=0.089 Sum_probs=57.5
Q ss_pred CCCcEEEEEEeCCCHH-hHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCcc--CHHHHHHHHHHhCCeEEEEecCC
Q psy5810 118 YHPDVFVIVYSVIERK-TFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQV--THSDGKKLAYAWGVKFVETSVGL 194 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~-Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v--~~~~~~~~~~~~~~~~~evSa~~ 194 (250)
+++|.+++|.|+.+|. +...+..++.... ..++|.++|.||+|+.+.... ..++..++....|.+.+.+||.+
T Consensus 85 anvD~v~~V~~~~~p~~~~~~i~r~L~~~~----~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~ 160 (307)
T 1t9h_A 85 CNVDQAVLVFSAVQPSFSTALLDRFLVLVE----ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKD 160 (307)
T ss_dssp ECCCEEEEEEESTTTTCCHHHHHHHHHHHH----TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHH
T ss_pred HhCCEEEEEEeCCCCCCCHHHHHHHHHHHH----HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4899999999998764 4445555554432 357899999999999653210 01223334445688999999999
Q ss_pred CCCHHHHHHH
Q psy5810 195 VYKTDELLVG 204 (250)
Q Consensus 195 ~~~I~~lf~~ 204 (250)
+.|+++++..
T Consensus 161 ~~g~~~L~~~ 170 (307)
T 1t9h_A 161 QDSLADIIPH 170 (307)
T ss_dssp HTTCTTTGGG
T ss_pred CCCHHHHHhh
Confidence 9998876654
No 228
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.72 E-value=1.8e-05 Score=70.89 Aligned_cols=88 Identities=11% Similarity=0.023 Sum_probs=46.9
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCC-c-EEEEeeCCCcc
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEK-A-VILVANKADLE 166 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~-p-iilv~nK~Dl~ 166 (250)
++.+.||+|..... ..... .......+..+|.+++|.|.+.... .......+ . ... | ..+|.||.|..
T Consensus 182 D~vIIDT~G~~~~~-~~l~~-~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~--~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 182 DVLIIDTAGRHKEE-KGLLE-EMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---K--EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SEEEEECCCSCSSH-HHHHH-HHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---H--TTSCSCEEEEEECSSSC
T ss_pred CEEEEcCCCCcccc-HHHHH-HHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---h--hcccCCeEEEEeCCCCc
Confidence 67889999965210 00011 0111122226899999999876532 22222222 1 234 5 88999999974
Q ss_pred CCCccCHHHHHHHHHHhCCeEEEE
Q psy5810 167 RRRQVTHSDGKKLAYAWGVKFVET 190 (250)
Q Consensus 167 ~~~~v~~~~~~~~~~~~~~~~~ev 190 (250)
.. ...+..+....+.++..+
T Consensus 252 ~~----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 252 AK----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ST----THHHHHHHHHSSCCEEEE
T ss_pred cc----hHHHHHHHHHHCCCEEEe
Confidence 31 122344566667664443
No 229
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.49 E-value=0.00026 Score=61.63 Aligned_cols=82 Identities=16% Similarity=0.059 Sum_probs=55.5
Q ss_pred CCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHH---HHHhCCeEEEEecCC
Q psy5810 118 YHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL---AYAWGVKFVETSVGL 194 (250)
Q Consensus 118 ~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~---~~~~~~~~~evSa~~ 194 (250)
+++|.+++|.+..-..+...+..++..... .++|.+||.||+|+.+... .+....+ ....|++.+.+||.+
T Consensus 129 anvD~v~iv~a~~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 129 ANIDQIVIVSAILPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp ECCCEEEEEEESTTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred hcCCEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecCC
Confidence 489999999776433355556666554422 4678899999999864221 1113333 345688999999999
Q ss_pred CCCHHHHHHHH
Q psy5810 195 VYKTDELLVGI 205 (250)
Q Consensus 195 ~~~I~~lf~~l 205 (250)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999877643
No 230
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.27 E-value=5.4e-05 Score=68.45 Aligned_cols=85 Identities=8% Similarity=0.006 Sum_probs=51.3
Q ss_pred EEEEEEEcCCCCchhhhchhhhccccc-cccccccCce-----------eEEEEEeCCCCc----cccC--------CCc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCSQVE-NFVQTYHPDV-----------FFIVYSDTNHTQ----RCLT--------PMP 106 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~~~~-~~~~~~~~~~-----------~~i~i~Dt~g~~----~~~~--------~~~ 106 (250)
.++|+++|.+|+||||+.. ++..... .+.++.+... ....+||..|++ +..+ ..+
T Consensus 39 ~~~IvlvGlpGsGKSTia~-~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~ 117 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISK-KLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF 117 (469)
T ss_dssp CEEEEEECCTTSSHHHHHH-HHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHH-HHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4569999999999999996 7765211 1111111000 012467887762 1111 122
Q ss_pred cccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHh
Q psy5810 107 FCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWD 147 (250)
Q Consensus 107 ~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~ 147 (250)
+. .+.+.++|+|.++. +++....|+..+.+
T Consensus 118 l~----------~~~G~~vV~D~tn~-~~~~R~~~~~~~~~ 147 (469)
T 1bif_A 118 LS----------EEGGHVAVFDATNT-TRERRAMIFNFGEQ 147 (469)
T ss_dssp HH----------TTCCSEEEEESCCC-SHHHHHHHHHHHHH
T ss_pred HH----------hCCCCEEEEeCCCC-CHHHHHHHHHHHHh
Confidence 22 56888999999998 56667778776654
No 231
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.25 E-value=0.00019 Score=66.57 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=21.9
Q ss_pred cEEEEEEEcCCCCchhhhchhhhccc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCSQ 75 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~~ 75 (250)
..+.|+|+|.+|||||||+| ++.+.
T Consensus 37 ~~~~VaivG~pnvGKStLiN-~L~g~ 61 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMN-KLAGK 61 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHH-HHTTC
T ss_pred CCcEEEEECCCCCCHHHHHH-hHcCC
Confidence 45679999999999999999 78774
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.20 E-value=0.00052 Score=58.30 Aligned_cols=98 Identities=17% Similarity=0.124 Sum_probs=53.1
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCc-EEEEeeCCCccC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLER 167 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~p-iilv~nK~Dl~~ 167 (250)
++.+.||+|...................+..+|.+++|.|.+... +.....+.+.+ ..| ..+|.||.|...
T Consensus 182 D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 182 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGGGCT
T ss_pred CEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCCCCc
Confidence 577899998753000000000000001111689999999986432 22222233321 345 678889999643
Q ss_pred CCccCHHHHHHHHHHhCCeEEEEecCCCCCHHH
Q psy5810 168 RRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDE 200 (250)
Q Consensus 168 ~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I~~ 200 (250)
....+...+...+.|+..++ .|+++++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKIDE 280 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCChhh
Confidence 12345567778888987776 5666543
No 233
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.02 E-value=0.00085 Score=57.77 Aligned_cols=69 Identities=10% Similarity=0.175 Sum_probs=41.4
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEecCCCCCH
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT 198 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~I 198 (250)
.+|-.+++.|.+... ++...+..+.+. .+ ..+++.||.|.... .-.+.......+.|+..++ +|+++
T Consensus 241 ~~de~llvLDa~t~~---~~~~~~~~~~~~---~~-it~iilTKlD~~a~----~G~~l~~~~~~~~pi~~i~--~Ge~v 307 (328)
T 3e70_C 241 KPNLVIFVGDALAGN---AIVEQARQFNEA---VK-IDGIILTKLDADAR----GGAALSISYVIDAPILFVG--VGQGY 307 (328)
T ss_dssp CCSEEEEEEEGGGTT---HHHHHHHHHHHH---SC-CCEEEEECGGGCSC----CHHHHHHHHHHTCCEEEEE--CSSST
T ss_pred cCCCCEEEEecHHHH---HHHHHHHHHHHh---cC-CCEEEEeCcCCccc----hhHHHHHHHHHCCCEEEEe--CCCCc
Confidence 578889999976543 233333333221 12 34667799996331 2335566777899977776 66665
Q ss_pred HH
Q psy5810 199 DE 200 (250)
Q Consensus 199 ~~ 200 (250)
++
T Consensus 308 ~d 309 (328)
T 3e70_C 308 DD 309 (328)
T ss_dssp TC
T ss_pred cc
Confidence 43
No 234
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.39 E-value=0.004 Score=58.04 Aligned_cols=21 Identities=10% Similarity=0.140 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|++|||||||++ .+.+
T Consensus 47 ~iaIvG~nGsGKSTLL~-~I~G 67 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLE-ALSG 67 (608)
T ss_dssp CEECCCCTTSCHHHHHH-HHHS
T ss_pred eEEEECCCCChHHHHHH-HHhC
Confidence 39999999999999997 6665
No 235
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.30 E-value=0.0036 Score=49.24 Aligned_cols=85 Identities=12% Similarity=-0.000 Sum_probs=51.6
Q ss_pred EEEEEeCCCCccccCCCccccccccccccCCCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhC-CCCCcEEEEeeCCCccC
Q psy5810 89 FIVYSDTNHTQRCLTPMPFCSQVENFVQTYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKY-IGEKAVILVANKADLER 167 (250)
Q Consensus 89 ~i~i~Dt~g~~~~~~~~~~~~~~~~~~~~~~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~ 167 (250)
++.++|+++........... .+|.++++.+.+... ..+..+++.+.+... ..+.++.+|.|+.|...
T Consensus 77 D~viiD~~~~~~~~~~~~l~----------~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~ 144 (206)
T 4dzz_A 77 DFAIVDGAGSLSVITSAAVM----------VSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA 144 (206)
T ss_dssp SEEEEECCSSSSHHHHHHHH----------HCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE
T ss_pred CEEEEECCCCCCHHHHHHHH----------HCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc
Confidence 56678888654222222222 589999999876544 566666666644321 23567799999998432
Q ss_pred CCccCHHHHHHHHHHhCCeEE
Q psy5810 168 RRQVTHSDGKKLAYAWGVKFV 188 (250)
Q Consensus 168 ~~~v~~~~~~~~~~~~~~~~~ 188 (250)
. ...+..++.+.++.+++
T Consensus 145 --~-~~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 145 --T-MLNVLKESIKDTGVKAF 162 (206)
T ss_dssp --E-EEHHHHHHHHHHTCCBC
T ss_pred --h-HHHHHHHHHHHcCCcee
Confidence 1 22445666666776654
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.25 E-value=0.0013 Score=51.47 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++|+|++|+|||||++ .+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~-~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVK-KIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 58999999999999996 6555
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.13 E-value=0.0017 Score=50.62 Aligned_cols=21 Identities=5% Similarity=0.178 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|++|||||||++ .+.+
T Consensus 7 ~i~i~GpsGsGKSTL~~-~L~~ 27 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKN-TLIT 27 (180)
T ss_dssp EEEEECCTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHh
Confidence 38999999999999997 6655
No 238
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.00 E-value=0.002 Score=51.00 Aligned_cols=20 Identities=5% Similarity=0.150 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 7 i~lvGpsGaGKSTLl~-~L~~ 26 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLLK-KLFQ 26 (198)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHh
Confidence 8999999999999996 6654
No 239
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.80 E-value=0.0033 Score=48.93 Aligned_cols=21 Identities=0% Similarity=0.248 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|.+|||||||++ .+.+
T Consensus 11 ~i~l~G~~GsGKSTl~~-~La~ 31 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAE-ALAN 31 (191)
T ss_dssp EEEEEECTTSCHHHHHH-HHHT
T ss_pred EEEEECCCCCCHHHHHH-HHHh
Confidence 39999999999999996 6766
No 240
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.79 E-value=0.0032 Score=48.58 Aligned_cols=20 Identities=0% Similarity=0.109 Sum_probs=17.1
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|||||||++ .+..
T Consensus 12 ~~l~G~nGsGKSTl~~-~~~~ 31 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAK-KHFK 31 (171)
T ss_dssp EEEECCTTSCHHHHHH-HHSC
T ss_pred EEEECCCCCCHHHHHH-HHcc
Confidence 8999999999999996 4443
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.73 E-value=0.0031 Score=49.63 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 10 i~l~Gp~GsGKSTl~~-~L~~ 29 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVR-ALVK 29 (205)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred EEEECcCCCCHHHHHH-HHHh
Confidence 8999999999999996 6655
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.70 E-value=0.0032 Score=49.22 Aligned_cols=20 Identities=5% Similarity=0.210 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 4 i~l~GpsGaGKsTl~~-~L~~ 23 (186)
T 3a00_A 4 IVISGPSGTGKSTLLK-KLFA 23 (186)
T ss_dssp EEEESSSSSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHh
Confidence 7899999999999996 6664
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.63 E-value=0.0036 Score=50.62 Aligned_cols=20 Identities=15% Similarity=0.311 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 19 i~l~GpsGsGKSTLlk-~L~g 38 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQ-ALLK 38 (219)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 9999999999999997 6655
No 244
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.63 E-value=0.0036 Score=49.79 Aligned_cols=21 Identities=5% Similarity=0.132 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|++|||||||++ .+..
T Consensus 21 ~ivl~GPSGaGKsTL~~-~L~~ 41 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKN-ALLS 41 (197)
T ss_dssp EEEEECCTTSSHHHHHH-HHHH
T ss_pred EEEEECcCCCCHHHHHH-HHHh
Confidence 38999999999999997 6665
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.60 E-value=0.0037 Score=49.73 Aligned_cols=20 Identities=0% Similarity=0.034 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 23 ~~l~GpnGsGKSTLl~-~l~g 42 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVR-CLRE 42 (207)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHh
Confidence 8999999999999996 6655
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.59 E-value=0.0037 Score=50.30 Aligned_cols=20 Identities=5% Similarity=0.164 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 26 ~~lvGpsGsGKSTLl~-~L~g 45 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIK-KLLN 45 (218)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHh
Confidence 8999999999999996 6665
No 247
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.52 E-value=0.0047 Score=48.66 Aligned_cols=20 Identities=5% Similarity=0.210 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|++|||||||++ ++..
T Consensus 4 IVi~GPSG~GK~Tl~~-~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLK-KLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999997 6654
No 248
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.50 E-value=0.0046 Score=49.16 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|+|++|+|||||++ .+.+
T Consensus 23 ~~v~I~G~sGsGKSTl~~-~l~~ 44 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSN-PLAA 44 (208)
T ss_dssp EEEEEECCTTSCTHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 459999999999999996 5555
No 249
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=95.43 E-value=0.0047 Score=49.22 Aligned_cols=20 Identities=0% Similarity=0.097 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|++|||||||++ .+..
T Consensus 11 i~l~GpsGsGKsTl~~-~L~~ 30 (208)
T 3tau_A 11 IVLSGPSGVGKGTVRE-AVFK 30 (208)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred EEEECcCCCCHHHHHH-HHHh
Confidence 8999999999999996 6665
No 250
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.39 E-value=0.0057 Score=49.94 Aligned_cols=20 Identities=0% Similarity=0.004 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 34 ~~iiG~nGsGKSTLl~-~l~G 53 (235)
T 3tif_A 34 VSIMGPSGSGKSTMLN-IIGC 53 (235)
T ss_dssp EEEECSTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCcHHHHHH-HHhc
Confidence 8999999999999995 5554
No 251
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.25 E-value=0.0067 Score=49.09 Aligned_cols=20 Identities=5% Similarity=-0.051 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 33 ~~iiG~nGsGKSTLl~-~l~G 52 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLY-ILGL 52 (224)
T ss_dssp EEEEECTTSCHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 8999999999999996 5555
No 252
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.22 E-value=0.0066 Score=48.05 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|.+|||||||++ .+..
T Consensus 15 i~l~G~sGsGKsTl~~-~L~~ 34 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIK-KVLS 34 (204)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999997 6654
No 253
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.22 E-value=0.0061 Score=46.60 Aligned_cols=20 Identities=0% Similarity=0.072 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|.+||||||+.+ .+.+
T Consensus 7 i~l~G~~GsGKSTl~~-~La~ 26 (173)
T 1kag_A 7 IFLVGPMGAGKSTIGR-QLAQ 26 (173)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999995 5554
No 254
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.18 E-value=0.0069 Score=52.66 Aligned_cols=21 Identities=10% Similarity=0.126 Sum_probs=19.0
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|.+|||||||+| .+.+
T Consensus 217 ~~~lvG~sG~GKSTLln-~L~g 237 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLN-ALLG 237 (358)
T ss_dssp EEEEECCTTSSHHHHHH-HHHC
T ss_pred EEEEECCCCccHHHHHH-HHhc
Confidence 38999999999999998 7776
No 255
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.16 E-value=0.0064 Score=46.51 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|+.|+|||||++ .+++
T Consensus 36 v~L~G~nGaGKTTLlr-~l~g 55 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTR-GMLQ 55 (158)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999995 6665
No 256
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.15 E-value=0.0064 Score=47.83 Aligned_cols=21 Identities=0% Similarity=0.120 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+++ .+.+
T Consensus 8 ~i~l~G~~GsGKSTl~~-~L~~ 28 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRK-RIFE 28 (207)
T ss_dssp EEEEECSTTSCHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 38999999999999996 6654
No 257
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.13 E-value=0.0072 Score=45.96 Aligned_cols=21 Identities=5% Similarity=0.153 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 3 ~i~l~G~~GsGKsT~~~-~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA-KLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 48999999999999996 6654
No 258
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=95.06 E-value=0.0091 Score=48.77 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 34 ~~i~G~nGsGKSTLl~-~l~G 53 (237)
T 2cbz_A 34 VAVVGQVGCGKSSLLS-ALLA 53 (237)
T ss_dssp EEEECSTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 8999999999999996 5655
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.06 E-value=0.0083 Score=45.46 Aligned_cols=19 Identities=0% Similarity=0.072 Sum_probs=17.1
Q ss_pred EEEEEcCCCCchhhhchhhh
Q psy5810 53 FFIVHSDTNHTQRCLTSMPF 72 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~ 72 (250)
.|+|+|.+||||||+.. .+
T Consensus 3 ~I~l~G~~GsGKsT~a~-~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK-LL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHH-HH
Confidence 48999999999999996 66
No 260
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=95.04 E-value=0.0085 Score=49.71 Aligned_cols=20 Identities=0% Similarity=-0.061 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 35 ~~liG~nGsGKSTLlk-~l~G 54 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLR-CINF 54 (262)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 8999999999999996 5555
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=95.03 E-value=0.0084 Score=49.13 Aligned_cols=20 Identities=5% Similarity=0.081 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 27 ~~liG~nGsGKSTLl~-~l~G 46 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLE-LIAG 46 (240)
T ss_dssp EEEECCTTSSHHHHHH-HHHT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 5655
No 262
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=95.02 E-value=0.0096 Score=48.78 Aligned_cols=20 Identities=5% Similarity=-0.019 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 31 ~~i~G~nGsGKSTLl~-~l~G 50 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFS-LLER 50 (243)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 9999999999999996 5555
No 263
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=95.02 E-value=0.0089 Score=48.11 Aligned_cols=20 Identities=10% Similarity=0.119 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 38 ~~iiG~NGsGKSTLlk-~l~G 57 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLK-TIST 57 (214)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 8999999999999996 5655
No 264
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.02 E-value=0.0093 Score=48.64 Aligned_cols=20 Identities=0% Similarity=-0.001 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhchhhhc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~ 73 (250)
.|+|+|.+|||||||++ .+.
T Consensus 29 ~i~l~G~~GsGKSTl~k-~La 48 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQ-RIA 48 (246)
T ss_dssp EEEEECCTTSSHHHHHH-HHH
T ss_pred EEEEECCCCCCHHHHHH-HHH
Confidence 49999999999999996 666
No 265
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=95.01 E-value=0.0095 Score=48.99 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 38 ~~i~G~nGsGKSTLl~-~l~G 57 (247)
T 2ff7_A 38 IGIVGRSGSGKSTLTK-LIQR 57 (247)
T ss_dssp EEEECSTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 8999999999999996 5555
No 266
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.99 E-value=0.0076 Score=46.91 Aligned_cols=20 Identities=5% Similarity=0.190 Sum_probs=17.3
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|.+|+|||||++ .+..
T Consensus 5 i~l~G~~GaGKSTl~~-~L~~ 24 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCK-RLAA 24 (189)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHhc
Confidence 7899999999999996 5653
No 267
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.99 E-value=0.009 Score=50.01 Aligned_cols=20 Identities=10% Similarity=0.069 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 37 ~~iiGpnGsGKSTLl~-~l~G 56 (275)
T 3gfo_A 37 TAILGGNGVGKSTLFQ-NFNG 56 (275)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHHc
Confidence 8999999999999996 5555
No 268
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.94 E-value=0.0095 Score=49.59 Aligned_cols=20 Identities=5% Similarity=0.032 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 40 ~~liG~nGsGKSTLl~-~l~G 59 (266)
T 4g1u_C 40 VAIIGPNGAGKSTLLR-LLTG 59 (266)
T ss_dssp EEEECCTTSCHHHHHH-HHTS
T ss_pred EEEECCCCCcHHHHHH-HHhc
Confidence 8999999999999996 5555
No 269
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.93 E-value=0.0078 Score=47.67 Aligned_cols=22 Identities=9% Similarity=0.132 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|+|.+|+|||||++ .+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~-~l~~ 28 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQ-ALAR 28 (211)
T ss_dssp EEEEEEESTTSSHHHHHH-HHHH
T ss_pred EEEEEECCCCCCHHHHHH-HHHH
Confidence 349999999999999996 5555
No 270
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.92 E-value=0.0092 Score=45.68 Aligned_cols=21 Identities=5% Similarity=0.097 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 4 ~I~i~G~~GsGKST~a~-~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR-EFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHH-HHHH
T ss_pred EEEEecCCCCCHHHHHH-HHHh
Confidence 48999999999999996 6654
No 271
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.92 E-value=0.0094 Score=49.27 Aligned_cols=20 Identities=5% Similarity=0.086 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 36 ~~liG~nGsGKSTLlk-~l~G 55 (257)
T 1g6h_A 36 TLIIGPNGSGKSTLIN-VITG 55 (257)
T ss_dssp EEEECSTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 5555
No 272
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.92 E-value=0.0082 Score=47.34 Aligned_cols=21 Identities=5% Similarity=0.110 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+|+|||||++ .+.+
T Consensus 31 ~i~l~G~~GsGKSTl~~-~L~~ 51 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAH-GVAD 51 (200)
T ss_dssp EEEEECCTTSCHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 39999999999999996 5554
No 273
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.90 E-value=0.009 Score=47.48 Aligned_cols=22 Identities=0% Similarity=-0.040 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+|.+||||||+.. .+..
T Consensus 1 m~I~l~G~~GsGKsT~a~-~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAE-QIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHH
Confidence 369999999999999996 5644
No 274
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.88 E-value=0.0095 Score=50.39 Aligned_cols=20 Identities=5% Similarity=-0.039 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|||||||++ .+.+
T Consensus 172 v~l~G~sG~GKSTll~-~l~g 191 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLN-AINP 191 (301)
T ss_dssp EEEECSTTSSHHHHHH-HHST
T ss_pred EEEECCCCCcHHHHHH-Hhcc
Confidence 8999999999999997 6665
No 275
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.88 E-value=0.01 Score=49.38 Aligned_cols=20 Identities=5% Similarity=0.019 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 53 ~~liG~NGsGKSTLlk-~l~G 72 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLR-CLNL 72 (263)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEEcCCCCcHHHHHH-HHHc
Confidence 8999999999999996 5555
No 276
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.87 E-value=0.01 Score=48.18 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 37 ~~i~G~nGsGKSTLl~-~l~G 56 (229)
T 2pze_A 37 LAVAGSTGAGKTSLLM-MIMG 56 (229)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 5655
No 277
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.87 E-value=0.0093 Score=46.67 Aligned_cols=21 Identities=0% Similarity=0.093 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 2 ~I~i~G~~GsGKsT~~~-~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA-EISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHH-HHHH
T ss_pred EEEEECCCccCHHHHHH-HHHH
Confidence 58999999999999996 5654
No 278
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.85 E-value=0.01 Score=48.55 Aligned_cols=20 Identities=5% Similarity=0.016 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 35 ~~l~G~nGsGKSTLl~-~l~G 54 (240)
T 1ji0_A 35 VTLIGANGAGKTTTLS-AIAG 54 (240)
T ss_dssp EEEECSTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 5555
No 279
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.85 E-value=0.0092 Score=47.48 Aligned_cols=22 Identities=0% Similarity=-0.044 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+|.+||||||+.. .+..
T Consensus 1 m~I~l~G~~GsGKsT~a~-~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGE-RIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHH
Confidence 369999999999999996 5644
No 280
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.84 E-value=0.0078 Score=48.57 Aligned_cols=19 Identities=5% Similarity=0.207 Sum_probs=13.6
Q ss_pred EEEEcCCCCchhhhchhhhc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~ 73 (250)
++|+|++|||||||++ .+.
T Consensus 30 i~l~Gp~GsGKSTl~~-~L~ 48 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVAN-KLL 48 (231)
T ss_dssp EEEECSCC----CHHH-HHH
T ss_pred EEEECCCCCCHHHHHH-HHH
Confidence 8999999999999997 677
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.81 E-value=0.012 Score=45.50 Aligned_cols=21 Identities=10% Similarity=-0.058 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|.|.+||||||+.. .+..
T Consensus 3 ~I~i~G~~GsGKsT~~~-~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA-KVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 6654
No 282
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.81 E-value=0.011 Score=48.75 Aligned_cols=20 Identities=5% Similarity=0.077 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 29 ~~liG~NGsGKSTLlk-~l~G 48 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLA-RMAG 48 (249)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCcHHHHHH-HHhC
Confidence 8999999999999996 5555
No 283
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.80 E-value=0.0042 Score=52.88 Aligned_cols=21 Identities=5% Similarity=0.080 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++++|.+|||||||+| .+.+
T Consensus 175 ~~~lvG~sG~GKSTLln-~L~g 195 (307)
T 1t9h_A 175 TTVFAGQSGVGKSSLLN-AISP 195 (307)
T ss_dssp EEEEEESHHHHHHHHHH-HHCC
T ss_pred EEEEECCCCCCHHHHHH-Hhcc
Confidence 49999999999999998 7766
No 284
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.79 E-value=0.012 Score=48.82 Aligned_cols=20 Identities=5% Similarity=0.067 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 49 ~~i~G~nGsGKSTLl~-~l~G 68 (260)
T 2ghi_A 49 CALVGHTGSGKSTIAK-LLYR 68 (260)
T ss_dssp EEEECSTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 9999999999999996 5655
No 285
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.79 E-value=0.0092 Score=47.78 Aligned_cols=20 Identities=5% Similarity=-0.067 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 25 ~~liG~nGsGKSTLl~-~l~G 44 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAM-AKAV 44 (208)
T ss_dssp EEEECCTTSSTTHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 8999999999999996 6665
No 286
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.78 E-value=0.011 Score=48.91 Aligned_cols=20 Identities=5% Similarity=-0.017 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 44 ~~l~G~NGsGKSTLlk-~l~G 63 (256)
T 1vpl_A 44 FGLIGPNGAGKTTTLR-IIST 63 (256)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 8999999999999996 5555
No 287
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.77 E-value=0.01 Score=48.78 Aligned_cols=20 Identities=5% Similarity=0.042 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 32 ~~l~G~nGsGKSTLlk-~l~G 51 (250)
T 2d2e_A 32 HALMGPNGAGKSTLGK-ILAG 51 (250)
T ss_dssp EEEECSTTSSHHHHHH-HHHT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 6665
No 288
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.75 E-value=0.011 Score=49.30 Aligned_cols=20 Identities=0% Similarity=-0.021 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 48 ~~i~G~nGsGKSTLlk-~l~G 67 (271)
T 2ixe_A 48 TALVGPNGSGKSTVAA-LLQN 67 (271)
T ss_dssp EEEECSTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 8999999999999996 5555
No 289
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.74 E-value=0.012 Score=49.23 Aligned_cols=20 Identities=10% Similarity=0.097 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 50 ~~liG~NGsGKSTLlk-~l~G 69 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLN-ILNA 69 (279)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCcHHHHHH-HHhC
Confidence 8999999999999996 5555
No 290
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.70 E-value=0.011 Score=49.09 Aligned_cols=20 Identities=5% Similarity=0.179 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 49 ~~l~G~NGsGKSTLlk-~l~G 68 (267)
T 2zu0_C 49 HAIMGPNGSGKSTLSA-TLAG 68 (267)
T ss_dssp EEEECCTTSSHHHHHH-HHHT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 6666
No 291
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.68 E-value=0.0098 Score=49.32 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|++|+|||||++ .+.+
T Consensus 27 ~v~i~Gp~GsGKSTll~-~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIA-SMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHH-HHHH
T ss_pred EEEEECCCCccHHHHHH-HHHH
Confidence 39999999999999996 6555
No 292
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.67 E-value=0.01 Score=46.75 Aligned_cols=20 Identities=5% Similarity=0.145 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|.+||||||+.. .+..
T Consensus 21 I~l~G~~GsGKSTla~-~L~~ 40 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGE-AIAE 40 (202)
T ss_dssp EEEECSTTSCHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6654
No 293
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.67 E-value=0.01 Score=46.72 Aligned_cols=20 Identities=5% Similarity=0.021 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 4 i~i~G~nG~GKTTll~-~l~g 23 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIH-KASE 23 (189)
T ss_dssp EEEESCCSSCHHHHHH-HHHH
T ss_pred EEEECCCCChHHHHHH-HHHh
Confidence 8999999999999996 5554
No 294
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.65 E-value=0.012 Score=45.13 Aligned_cols=20 Identities=10% Similarity=0.162 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+++|.+||||||+.. .+..
T Consensus 6 i~l~G~~GsGKST~a~-~La~ 25 (178)
T 1qhx_A 6 IILNGGSSAGKSGIVR-CLQS 25 (178)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6654
No 295
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.65 E-value=0.012 Score=47.67 Aligned_cols=19 Identities=11% Similarity=0.293 Sum_probs=17.3
Q ss_pred EEEEcCCCCchhhhchhhhc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~ 73 (250)
++|+|++|+|||||++ .++
T Consensus 33 ~~l~GpnGsGKSTLl~-~i~ 51 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAA-QFI 51 (251)
T ss_dssp EEEECCTTSSHHHHHH-HHH
T ss_pred EEEEeCCCCCHHHHHH-HHH
Confidence 8999999999999996 666
No 296
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.64 E-value=0.011 Score=45.40 Aligned_cols=21 Identities=5% Similarity=0.225 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+|+||||++. .+..
T Consensus 10 ~i~l~G~~GsGKSTl~~-~l~~ 30 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVAS-EVAH 30 (175)
T ss_dssp EEEEECSTTSCHHHHHH-HHHH
T ss_pred EEEEEcCCCCCHHHHHH-HHHH
Confidence 49999999999999995 5544
No 297
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=94.63 E-value=0.013 Score=46.08 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 27 ~i~l~G~~GsGKsTl~~-~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGK-AFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHH-HHHH
T ss_pred EEEEEcCCCCCHHHHHH-HHHH
Confidence 39999999999999995 6554
No 298
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.62 E-value=0.012 Score=48.47 Aligned_cols=20 Identities=10% Similarity=0.087 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 34 ~~l~G~nGsGKSTLl~-~l~G 53 (253)
T 2nq2_C 34 LAVLGQNGCGKSTLLD-LLLG 53 (253)
T ss_dssp EEEECCSSSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 5655
No 299
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=94.61 E-value=0.009 Score=46.14 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||+|+. .+.+
T Consensus 41 ~~l~G~~G~GKTtL~~-~i~~ 60 (180)
T 3ec2_A 41 LTFVGSPGVGKTHLAV-ATLK 60 (180)
T ss_dssp EEECCSSSSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6655
No 300
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.60 E-value=0.051 Score=42.42 Aligned_cols=20 Identities=0% Similarity=0.092 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+|+. .+..
T Consensus 41 ~ll~G~~G~GKT~l~~-~l~~ 60 (226)
T 2chg_A 41 LLFSGPPGTGKTATAI-ALAR 60 (226)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6654
No 301
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.60 E-value=0.013 Score=48.77 Aligned_cols=20 Identities=15% Similarity=0.230 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 36 ~~liG~nGsGKSTLl~-~i~G 55 (266)
T 2yz2_A 36 LLVAGNTGSGKSTLLQ-IVAG 55 (266)
T ss_dssp EEEECSTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCcHHHHHH-HHhC
Confidence 8999999999999996 5555
No 302
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.60 E-value=0.012 Score=49.92 Aligned_cols=19 Identities=11% Similarity=0.149 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhhhchhhhc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~ 73 (250)
++++|.+|||||||+| .+.
T Consensus 168 ~~l~G~sG~GKSTLln-~l~ 186 (302)
T 2yv5_A 168 CILAGPSGVGKSSILS-RLT 186 (302)
T ss_dssp EEEECSTTSSHHHHHH-HHH
T ss_pred EEEECCCCCCHHHHHH-HHH
Confidence 8999999999999998 665
No 303
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.59 E-value=0.013 Score=45.63 Aligned_cols=20 Identities=5% Similarity=0.023 Sum_probs=18.0
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|.+|+|||||++ ++..
T Consensus 9 i~i~G~sGsGKTTl~~-~l~~ 28 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLK-KLIP 28 (174)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred EEEEeCCCCCHHHHHH-HHHH
Confidence 8999999999999997 6665
No 304
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.54 E-value=0.012 Score=50.04 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 129 vaIvGpsGsGKSTLl~-lL~g 148 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCN-SLIH 148 (305)
T ss_dssp EEEECSSSSSHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHhh
Confidence 9999999999999996 6554
No 305
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.52 E-value=0.016 Score=47.83 Aligned_cols=24 Identities=0% Similarity=-0.047 Sum_probs=19.8
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+...|+|.|..||||||+++ .+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~-~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVN-ILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHT-TTGG
T ss_pred CceEEEEECCCCCCHHHHHH-HHHH
Confidence 44569999999999999996 6655
No 306
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.52 E-value=0.012 Score=46.45 Aligned_cols=21 Identities=10% Similarity=0.091 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+|+|||||.+ .+..
T Consensus 27 ~i~l~G~sGsGKSTl~~-~La~ 47 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLAC-ALNQ 47 (200)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999995 5554
No 307
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.51 E-value=0.011 Score=47.07 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+++
T Consensus 28 ~~l~G~nGsGKSTll~-~l~g 47 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAH-TLAV 47 (231)
T ss_dssp EEEEESTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6654
No 308
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.48 E-value=0.013 Score=46.76 Aligned_cols=21 Identities=5% Similarity=0.159 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.+ .+..
T Consensus 7 ~i~i~G~~GsGKSTl~~-~L~~ 27 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCK-AMAE 27 (227)
T ss_dssp EEEEECCTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 5543
No 309
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.46 E-value=0.017 Score=44.60 Aligned_cols=22 Identities=9% Similarity=-0.000 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+++|.+||||||+.. .+..
T Consensus 5 ~~I~l~G~~GsGKST~~~-~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQAS-RLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 459999999999999996 6653
No 310
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.45 E-value=0.016 Score=48.11 Aligned_cols=20 Identities=10% Similarity=0.164 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 33 ~~i~G~NGsGKSTLlk-~l~G 52 (263)
T 2pjz_A 33 VIILGPNGSGKTTLLR-AISG 52 (263)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 5555
No 311
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.44 E-value=0.014 Score=45.96 Aligned_cols=21 Identities=5% Similarity=0.015 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+|+|+|.+||||||+.+ .+.+
T Consensus 3 ~i~i~G~~GsGKSTl~~-~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ-MFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCcCHHHHHH-HHHH
Confidence 49999999999999996 5544
No 312
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.40 E-value=0.0072 Score=46.89 Aligned_cols=21 Identities=5% Similarity=0.177 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|.+|+|||||++ .+..
T Consensus 4 ~v~IvG~SGsGKSTL~~-~L~~ 24 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLIT-RMMP 24 (171)
T ss_dssp EEEEEESCHHHHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 38999999999999996 6655
No 313
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=94.37 E-value=0.012 Score=51.05 Aligned_cols=23 Identities=4% Similarity=0.075 Sum_probs=19.5
Q ss_pred EEEEEEEcCCCCchhhhchhhhcc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.-+++|+|.+|+|||||++ .+.+
T Consensus 170 g~k~~IvG~nGsGKSTLlk-~L~g 192 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVN-KLAA 192 (365)
T ss_dssp CEEEEEECCTTSHHHHHHH-HHHH
T ss_pred hCeEEEECCCCCCHHHHHH-HHHH
Confidence 4579999999999999996 5555
No 314
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.37 E-value=0.017 Score=44.67 Aligned_cols=21 Identities=5% Similarity=-0.070 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|.|.+||||||+.. .+..
T Consensus 5 ~I~i~G~~GsGKsT~~~-~L~~ 25 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQ-LAMD 25 (192)
T ss_dssp EEEEECCTTSCHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 5554
No 315
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.35 E-value=0.019 Score=45.30 Aligned_cols=21 Identities=5% Similarity=0.112 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.+ .+.+
T Consensus 4 ~i~l~G~~GsGKST~~~-~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN-LFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHH-HHHT
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 5544
No 316
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.33 E-value=0.014 Score=46.43 Aligned_cols=21 Identities=5% Similarity=-0.100 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+|+|+|.+||||||+.. .+..
T Consensus 2 ~I~l~G~~GsGKsT~a~-~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ-FIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 59999999999999996 5544
No 317
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.33 E-value=0.012 Score=50.07 Aligned_cols=20 Identities=0% Similarity=0.027 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 83 vaivG~sGsGKSTLl~-ll~g 102 (306)
T 3nh6_A 83 LALVGPSGAGKSTILR-LLFR 102 (306)
T ss_dssp EEEESSSCHHHHHHHH-HHTT
T ss_pred EEEECCCCchHHHHHH-HHHc
Confidence 9999999999999996 5554
No 318
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.32 E-value=0.015 Score=46.51 Aligned_cols=22 Identities=0% Similarity=0.078 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+.|+++|+|||||+|... +++.
T Consensus 1 M~Iil~GpPGsGKgTqa~-~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAK-RLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHH
Confidence 358999999999999996 6554
No 319
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.31 E-value=0.018 Score=44.58 Aligned_cols=21 Identities=14% Similarity=0.320 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 7 ~I~l~G~~GsGKST~~~-~L~~ 27 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQ-ALAT 27 (193)
T ss_dssp EEEEEESTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 6554
No 320
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.29 E-value=0.014 Score=49.77 Aligned_cols=22 Identities=5% Similarity=-0.050 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|+|++|||||||++ .+.+
T Consensus 91 ~ivgI~G~sGsGKSTL~~-~L~g 112 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTAR-VLQA 112 (312)
T ss_dssp EEEEEECCTTSCHHHHHH-HHHH
T ss_pred EEEEEECCCCchHHHHHH-HHHh
Confidence 449999999999999996 5555
No 321
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=94.24 E-value=0.018 Score=48.51 Aligned_cols=20 Identities=15% Similarity=0.110 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 67 ~~i~G~NGsGKSTLlk-~l~G 86 (290)
T 2bbs_A 67 LAVAGSTGAGKTSLLM-MIMG 86 (290)
T ss_dssp EEEEESTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCcHHHHHH-HHhc
Confidence 8999999999999996 5655
No 322
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.23 E-value=0.023 Score=44.62 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|+|.+||||||+.. .+..
T Consensus 16 ~~I~l~G~~GsGKsT~~~-~L~~ 37 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCE-KLVK 37 (203)
T ss_dssp EEEEEECSTTSSHHHHHH-HHHH
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 459999999999999996 5653
No 323
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=94.20 E-value=0.019 Score=44.36 Aligned_cols=21 Identities=5% Similarity=-0.032 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+++|.+||||||+.. .+..
T Consensus 7 ~i~l~G~~GsGKst~a~-~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGS-QLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 39999999999999996 6644
No 324
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.15 E-value=0.021 Score=44.82 Aligned_cols=22 Identities=5% Similarity=0.019 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|.|.+||||||+.. .+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~-~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQAT-LLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHH
T ss_pred eEEEEEcCCCCCHHHHHH-HHHH
Confidence 459999999999999996 6654
No 325
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.14 E-value=0.015 Score=43.91 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||+|+. .+.+
T Consensus 39 ~~l~G~~G~GKTtL~~-~i~~ 58 (149)
T 2kjq_A 39 IYVWGEEGAGKSHLLQ-AWVA 58 (149)
T ss_dssp EEEESSSTTTTCHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6665
No 326
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.11 E-value=0.018 Score=43.61 Aligned_cols=21 Identities=5% Similarity=-0.121 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+|+|.|.+||||||+.. .+..
T Consensus 2 ~I~l~G~~GsGKsT~a~-~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS-LLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHH-HHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHH
Confidence 59999999999999995 5544
No 327
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.09 E-value=0.019 Score=43.90 Aligned_cols=20 Identities=0% Similarity=0.091 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|+. .+..
T Consensus 46 ~ll~G~~G~GKT~l~~-~~~~ 65 (195)
T 1jbk_A 46 PVLIGEPGVGKTAIVE-GLAQ 65 (195)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred eEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6655
No 328
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.02 E-value=0.023 Score=44.79 Aligned_cols=22 Identities=14% Similarity=0.113 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|+|.+|+|||||++ .+..
T Consensus 22 ~~i~i~G~~GsGKSTl~~-~L~~ 43 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAK-NLQK 43 (207)
T ss_dssp EEEEEEESTTSSHHHHHH-HHHT
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 349999999999999996 6655
No 329
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.98 E-value=0.019 Score=49.91 Aligned_cols=20 Identities=5% Similarity=0.112 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 33 ~~llGpsGsGKSTLLr-~iaG 52 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLR-CLAG 52 (359)
T ss_dssp EEEEESTTSSHHHHHH-HHHT
T ss_pred EEEECCCCchHHHHHH-HHhc
Confidence 8999999999999995 5555
No 330
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.98 E-value=0.021 Score=46.08 Aligned_cols=22 Identities=5% Similarity=0.135 Sum_probs=18.8
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|+|..|||||||++ .+.+
T Consensus 21 ~~i~i~G~~GsGKSTl~~-~L~~ 42 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLN-HFEK 42 (230)
T ss_dssp EEEEEECSTTSCHHHHHH-TTGG
T ss_pred eEEEEECCCCCCHHHHHH-HHHh
Confidence 459999999999999996 5655
No 331
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.95 E-value=0.018 Score=46.29 Aligned_cols=21 Identities=5% Similarity=0.091 Sum_probs=18.0
Q ss_pred EEEEEEcCCCCchhhhchhhhc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~ 73 (250)
..|+|+|.+||||||+.. .+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~-~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSS-RIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHH-HHH
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 359999999999999996 554
No 332
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.89 E-value=0.02 Score=44.47 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|++.|.+||||||+.+ .+..
T Consensus 2 ~I~l~G~~GsGKsT~~~-~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQ-LLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 48999999999999996 6654
No 333
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.88 E-value=0.68 Score=39.19 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=39.2
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcE-EEEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYAWGVKFVE 189 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 189 (250)
.||.+|++... +..++..+...++.+.......+.++ -+|.|.++.. .+..+++++++.+++.
T Consensus 186 aAd~viIvt~~-e~~Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~~-------~~v~~~a~~~~~~~lg 249 (314)
T 3fwy_A 186 HADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DEVDRFCKETNFRRLA 249 (314)
T ss_dssp TCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HHHHHHHHHHTCCEEE
T ss_pred hCCeEEEEeCC-cHHHHHHHHHHHHHHHHHhccCCCceEEEEEcCCCch-------hHHHHHHHHhCCeEEE
Confidence 68888888755 35566677666666654433334444 2567776532 3456778888877653
No 334
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.86 E-value=0.021 Score=49.55 Aligned_cols=20 Identities=0% Similarity=-0.039 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 44 ~~llGpnGsGKSTLLr-~iaG 63 (355)
T 1z47_A 44 VGLLGPSGSGKTTILR-LIAG 63 (355)
T ss_dssp EEEECSTTSSHHHHHH-HHHT
T ss_pred EEEECCCCCcHHHHHH-HHhC
Confidence 8999999999999995 5555
No 335
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.86 E-value=0.027 Score=43.57 Aligned_cols=22 Identities=5% Similarity=0.046 Sum_probs=18.3
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|+|.+||||||+.. .+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~-~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCA-RIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 359999999999999995 5544
No 336
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.85 E-value=0.021 Score=45.89 Aligned_cols=21 Identities=0% Similarity=-0.050 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 2 ~I~l~G~~GsGKsT~a~-~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN-LVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 59999999999999996 5544
No 337
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.81 E-value=0.021 Score=45.51 Aligned_cols=22 Identities=0% Similarity=0.015 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+|.+||||||+.. .+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~-~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAP-NLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHH-HHHH
T ss_pred cEEEEECCCCCCHHHHHH-HHHH
Confidence 359999999999999996 5544
No 338
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.81 E-value=0.019 Score=46.72 Aligned_cols=21 Identities=10% Similarity=0.083 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|+.|+|||||++ .+.+
T Consensus 27 iigI~G~~GsGKSTl~k-~L~~ 47 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCE-KIME 47 (245)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 5654
No 339
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.79 E-value=0.03 Score=51.35 Aligned_cols=20 Identities=5% Similarity=-0.007 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 28 ~gLiGpNGaGKSTLlk-iL~G 47 (538)
T 3ozx_A 28 LGVLGKNGVGKTTVLK-ILAG 47 (538)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCcHHHHHH-HHhc
Confidence 8999999999999996 6665
No 340
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.77 E-value=0.024 Score=48.66 Aligned_cols=20 Identities=15% Similarity=0.157 Sum_probs=18.0
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 174 v~i~G~~GsGKTTll~-~l~g 193 (330)
T 2pt7_A 174 VIVCGGTGSGKTTYIK-SIME 193 (330)
T ss_dssp EEEEESTTSCHHHHHH-HGGG
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 9999999999999996 6665
No 341
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.77 E-value=0.022 Score=49.47 Aligned_cols=20 Identities=0% Similarity=-0.081 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 32 ~~llGpnGsGKSTLLr-~iaG 51 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLL-MLAG 51 (359)
T ss_dssp EEEECSTTSSHHHHHH-HHHT
T ss_pred EEEEcCCCchHHHHHH-HHHC
Confidence 8999999999999995 5555
No 342
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.76 E-value=0.023 Score=43.71 Aligned_cols=20 Identities=10% Similarity=0.187 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+++|.+|+||||+.. .+..
T Consensus 14 i~i~G~~GsGKst~~~-~l~~ 33 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGK-ELAS 33 (180)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEEeCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6653
No 343
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.76 E-value=0.023 Score=49.45 Aligned_cols=20 Identities=5% Similarity=0.079 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 32 ~~llGpnGsGKSTLLr-~iaG 51 (362)
T 2it1_A 32 MALLGPSGSGKSTLLY-TIAG 51 (362)
T ss_dssp EEEECCTTSSHHHHHH-HHHT
T ss_pred EEEECCCCchHHHHHH-HHhc
Confidence 8999999999999995 5555
No 344
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.76 E-value=0.02 Score=48.60 Aligned_cols=20 Identities=5% Similarity=-0.012 Sum_probs=17.2
Q ss_pred EEEEEcCCCCchhhhchhhhc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~ 73 (250)
.++|+|++||||||++. .+.
T Consensus 104 vi~lvG~nGsGKTTll~-~La 123 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIA-KLG 123 (304)
T ss_dssp EEEEECSTTSSHHHHHH-HHH
T ss_pred EEEEECCCCCcHHHHHH-HHH
Confidence 39999999999999996 544
No 345
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.73 E-value=0.021 Score=46.07 Aligned_cols=22 Identities=5% Similarity=0.012 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|+|.+||||||+.. .+..
T Consensus 17 ~~I~l~G~~GsGKsT~a~-~La~ 38 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAP-KLAK 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 459999999999999996 6554
No 346
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.71 E-value=0.028 Score=45.81 Aligned_cols=24 Identities=4% Similarity=-0.058 Sum_probs=19.7
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..+.|+|+|.+||||||+.. ++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~-~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL-NLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH-HHHH
T ss_pred CCcEEEEECCCCCCHHHHHH-HHHH
Confidence 34569999999999999996 6654
No 347
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.68 E-value=0.03 Score=43.93 Aligned_cols=23 Identities=4% Similarity=0.083 Sum_probs=18.9
Q ss_pred EEEEEEEcCCCCchhhhchhhhcc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.+.|+|+|.+||||||+.. .+..
T Consensus 20 ~~~I~l~G~~GsGKST~a~-~La~ 42 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV-KLAE 42 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH-HHHH
T ss_pred CeEEEEECCCCCCHHHHHH-HHHH
Confidence 3459999999999999996 5554
No 348
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.68 E-value=0.024 Score=49.64 Aligned_cols=20 Identities=5% Similarity=0.057 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 32 ~~llGpsGsGKSTLLr-~iaG 51 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLR-MIAG 51 (381)
T ss_dssp EEEECCTTSSHHHHHH-HHHT
T ss_pred EEEEcCCCchHHHHHH-HHHc
Confidence 8999999999999995 5555
No 349
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.68 E-value=0.021 Score=49.62 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=18.5
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|++|+|||||++ .+++
T Consensus 125 ~i~I~GptGSGKTTlL~-~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLA-AMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHh
Confidence 59999999999999997 6655
No 350
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.67 E-value=0.024 Score=49.34 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=17.3
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 57 ~~IiGpnGaGKSTLlr-~i~G 76 (366)
T 3tui_C 57 YGVIGASGAGKSTLIR-CVNL 76 (366)
T ss_dssp EEEECCTTSSHHHHHH-HHHT
T ss_pred EEEEcCCCchHHHHHH-HHhc
Confidence 8999999999999995 5554
No 351
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.67 E-value=0.022 Score=46.51 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||+|++ .+.+
T Consensus 52 ~ll~G~~G~GKTtl~~-~i~~ 71 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLAR-AVAG 71 (254)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6665
No 352
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.66 E-value=0.023 Score=49.36 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|++|+|||||++ .+.+
T Consensus 177 ~i~ivG~sGsGKSTll~-~l~~ 197 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMK-ALMQ 197 (361)
T ss_dssp CEEEEESSSSCHHHHHH-HHHT
T ss_pred EEEEECCCCCCHHHHHH-HHHh
Confidence 39999999999999997 6665
No 353
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.64 E-value=0.024 Score=49.50 Aligned_cols=20 Identities=5% Similarity=0.039 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 32 ~~llGpnGsGKSTLLr-~iaG 51 (372)
T 1g29_1 32 MILLGPSGCGKTTTLR-MIAG 51 (372)
T ss_dssp EEEECSTTSSHHHHHH-HHHT
T ss_pred EEEECCCCcHHHHHHH-HHHc
Confidence 8999999999999995 5555
No 354
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.64 E-value=0.024 Score=43.80 Aligned_cols=21 Identities=0% Similarity=-0.007 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|.|.+||||||+.. .+..
T Consensus 2 ~I~l~G~~GsGKsT~~~-~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK-KLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 48999999999999996 5554
No 355
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.63 E-value=0.025 Score=49.42 Aligned_cols=20 Identities=0% Similarity=0.031 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 40 ~~llGpnGsGKSTLLr-~iaG 59 (372)
T 1v43_A 40 LVLLGPSGCGKTTTLR-MIAG 59 (372)
T ss_dssp EEEECCTTSSHHHHHH-HHHT
T ss_pred EEEECCCCChHHHHHH-HHHc
Confidence 8999999999999995 5554
No 356
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.61 E-value=0.029 Score=43.87 Aligned_cols=21 Identities=0% Similarity=-0.010 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|.|.+||||||+.. .+..
T Consensus 6 ~I~l~G~~GsGKsT~~~-~L~~ 26 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCM-NIME 26 (204)
T ss_dssp EEEEECCTTSSHHHHHH-HHHH
T ss_pred EEEEEcCCCCCHHHHHH-HHHH
Confidence 49999999999999996 6654
No 357
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=93.56 E-value=0.023 Score=47.39 Aligned_cols=20 Identities=5% Similarity=0.135 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||+|++ .+.+
T Consensus 47 vlL~Gp~GtGKTtLak-ala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAK-AVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHHH
Confidence 9999999999999996 6665
No 358
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.55 E-value=0.029 Score=43.52 Aligned_cols=21 Identities=0% Similarity=0.132 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 12 ~I~l~G~~GsGKSTv~~-~La~ 32 (184)
T 1y63_A 12 NILITGTPGTGKTSMAE-MIAA 32 (184)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 5554
No 359
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.54 E-value=0.026 Score=44.88 Aligned_cols=20 Identities=5% Similarity=0.192 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||+. .++.
T Consensus 26 ~~i~G~~GsGKTtl~~-~l~~ 45 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSL-HFIA 45 (235)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEEcCCCCCHHHHHH-HHHH
Confidence 8899999999999996 6664
No 360
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.52 E-value=0.024 Score=44.71 Aligned_cols=22 Identities=5% Similarity=0.126 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|+|.+|+|||||++ .+.+
T Consensus 23 ~~i~i~G~~GsGKstl~~-~l~~ 44 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLAN-QLSQ 44 (201)
T ss_dssp EEEEEEECTTSSHHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 459999999999999996 5554
No 361
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.50 E-value=0.028 Score=43.07 Aligned_cols=20 Identities=5% Similarity=0.077 Sum_probs=17.3
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|.+||||||+.. .+..
T Consensus 7 i~i~G~~GsGKsTla~-~La~ 26 (175)
T 1via_A 7 IVFIGFMGSGKSTLAR-ALAK 26 (175)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred EEEEcCCCCCHHHHHH-HHHH
Confidence 9999999999999995 5544
No 362
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=93.50 E-value=0.012 Score=46.56 Aligned_cols=21 Identities=10% Similarity=0.216 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|.|.+||||||+++ .+..
T Consensus 2 ~I~i~G~~GsGKsTl~~-~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVE-KLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHH-HHHH
T ss_pred EEEEEcCCCCCHHHHHH-HHHH
Confidence 48999999999999996 6654
No 363
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=93.49 E-value=0.059 Score=48.18 Aligned_cols=26 Identities=12% Similarity=-0.042 Sum_probs=21.5
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..+...|.|+|.+++|||+|+| ++.+
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN-~llg 89 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMD-FMLR 89 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHH-HHHH
T ss_pred CCceEEEEEECCCCCcHHHHHH-HHhh
Confidence 3456679999999999999999 6653
No 364
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.49 E-value=0.026 Score=47.33 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.-|+|.|.+||||||+.. .+..
T Consensus 34 ~livl~G~sGsGKSTla~-~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS-AIFE 55 (287)
T ss_dssp EEEEEECCTTSCTHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 459999999999999996 6653
No 365
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.46 E-value=0.028 Score=43.63 Aligned_cols=21 Identities=5% Similarity=0.047 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 11 ~I~l~G~~GsGKsT~~~-~La~ 31 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCE-KIVQ 31 (196)
T ss_dssp EEEEEECTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 5543
No 366
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.43 E-value=0.025 Score=47.95 Aligned_cols=21 Identities=0% Similarity=0.004 Sum_probs=17.6
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++++|.+||||||++. .+.+
T Consensus 102 vi~lvG~nGsGKTTll~-~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLG-KLAH 122 (302)
T ss_dssp EEEEECCTTSCHHHHHH-HHHH
T ss_pred EEEEEcCCCCCHHHHHH-HHHH
Confidence 39999999999999996 5443
No 367
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.41 E-value=0.03 Score=43.33 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|.+|+|||||+. ++..
T Consensus 7 i~i~G~sGsGKTTl~~-~L~~ 26 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLME-KWVA 26 (169)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999997 6665
No 368
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.39 E-value=0.029 Score=43.38 Aligned_cols=22 Identities=0% Similarity=0.099 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+++|.+|+||||+.. .+..
T Consensus 14 ~~i~l~G~~GsGKsT~~~-~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIAT-RLAD 35 (186)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHH
T ss_pred cEEEEEcCCCCCHHHHHH-HHHH
Confidence 459999999999999996 5554
No 369
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.36 E-value=0.025 Score=47.88 Aligned_cols=22 Identities=0% Similarity=-0.032 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|+|.+|+|||||++ .+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~-~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTAR-VLQA 102 (308)
T ss_dssp EEEEEEECTTSSHHHHHH-HHHH
T ss_pred EEEEEECCCCCCHHHHHH-HHHH
Confidence 459999999999999996 5554
No 370
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.32 E-value=0.025 Score=49.34 Aligned_cols=21 Identities=10% Similarity=0.186 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|++|+|||||++ .+.+
T Consensus 138 ~i~ivG~~GsGKTTll~-~l~~ 158 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIA-SMID 158 (372)
T ss_dssp EEEEECSSSSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHh
Confidence 49999999999999997 6655
No 371
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.32 E-value=0.029 Score=44.79 Aligned_cols=21 Identities=0% Similarity=-0.056 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 7 ~I~l~G~~GsGKsT~~~-~La~ 27 (222)
T 1zak_A 7 KVMISGAPASGKGTQCE-LIKT 27 (222)
T ss_dssp CEEEEESTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 39999999999999996 5544
No 372
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=93.32 E-value=0.03 Score=46.03 Aligned_cols=20 Identities=5% Similarity=0.067 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|.+|||||||.. .+..
T Consensus 4 i~I~G~~GSGKSTla~-~La~ 23 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAI-QIAQ 23 (253)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCcCHHHHHH-HHHh
Confidence 8999999999999996 6654
No 373
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.32 E-value=0.021 Score=49.40 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 29 ~~llGpnGsGKSTLLr-~iaG 48 (348)
T 3d31_A 29 FVILGPTGAGKTLFLE-LIAG 48 (348)
T ss_dssp EEEECCCTHHHHHHHH-HHHT
T ss_pred EEEECCCCccHHHHHH-HHHc
Confidence 8999999999999995 5555
No 374
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.30 E-value=0.033 Score=45.67 Aligned_cols=20 Identities=10% Similarity=0.175 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhhhchhhhc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~ 73 (250)
.|+|+|.+||||||+++ .+.
T Consensus 29 ~I~I~G~~GsGKSTl~k-~La 48 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCK-ALA 48 (252)
T ss_dssp EEEEECCTTSSHHHHHH-HHH
T ss_pred EEEEECCCCCCHHHHHH-HHH
Confidence 49999999999999996 665
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.30 E-value=0.029 Score=44.75 Aligned_cols=22 Identities=5% Similarity=-0.112 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+|.+||||||+.. .+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~-~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCE-FIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 359999999999999995 5544
No 376
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.25 E-value=0.031 Score=43.44 Aligned_cols=21 Identities=0% Similarity=0.055 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 14 ~I~l~G~~GsGKsT~a~-~L~~ 34 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCE-KLVE 34 (199)
T ss_dssp EEEEEECTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999995 5544
No 377
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.23 E-value=0.031 Score=43.95 Aligned_cols=21 Identities=5% Similarity=0.124 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|.|.+||||||+.. .+..
T Consensus 12 ~I~l~G~~GsGKST~~~-~L~~ 32 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSK-LLVE 32 (212)
T ss_dssp EEEEEESTTSSHHHHHH-HHHH
T ss_pred EEEEEcCCCCCHHHHHH-HHHH
Confidence 49999999999999996 6654
No 378
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.23 E-value=0.033 Score=48.95 Aligned_cols=20 Identities=20% Similarity=0.144 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 50 ~~llGpsGsGKSTLLr-~iaG 69 (390)
T 3gd7_A 50 VGLLGRTGSGKSTLLS-AFLR 69 (390)
T ss_dssp EEEEESTTSSHHHHHH-HHHT
T ss_pred EEEECCCCChHHHHHH-HHhC
Confidence 9999999999999995 5555
No 379
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.20 E-value=0.033 Score=42.28 Aligned_cols=20 Identities=0% Similarity=0.004 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|.|.+||||||+.. .+..
T Consensus 5 I~l~G~~GsGKsT~a~-~La~ 24 (173)
T 1e6c_A 5 IFMVGARGCGMTTVGR-ELAR 24 (173)
T ss_dssp EEEESCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999995 5544
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.17 E-value=0.033 Score=46.90 Aligned_cols=24 Identities=4% Similarity=0.102 Sum_probs=19.5
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
....|+|+|.+|||||||++ .+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~-~L~~ 53 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSI-QIYN 53 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHHH-HHHH
Confidence 34569999999999999996 5544
No 381
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.16 E-value=0.039 Score=42.52 Aligned_cols=21 Identities=5% Similarity=0.023 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 8 ~I~l~G~~GsGKsT~~~-~L~~ 28 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA-NIVR 28 (194)
T ss_dssp EEEEEESTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999995 5544
No 382
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.14 E-value=0.039 Score=45.39 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 6 lIvl~G~pGSGKSTla~-~La~ 26 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSK-NLAK 26 (260)
T ss_dssp EEEEECCTTSSHHHHHH-HHHH
T ss_pred EEEEEcCCCCCHHHHHH-HHHH
Confidence 49999999999999996 6554
No 383
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.10 E-value=0.033 Score=43.89 Aligned_cols=21 Identities=0% Similarity=0.102 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|.|.+||||||+.. .+..
T Consensus 11 ~I~l~G~~GsGKsT~~~-~L~~ 31 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSR-KLVE 31 (215)
T ss_dssp EEEEEESTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 6654
No 384
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.08 E-value=0.025 Score=43.08 Aligned_cols=20 Identities=10% Similarity=0.110 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|+. .+..
T Consensus 46 vll~G~~G~GKT~la~-~~~~ 65 (187)
T 2p65_A 46 PILLGDPGVGKTAIVE-GLAI 65 (187)
T ss_dssp EEEESCGGGCHHHHHH-HHHH
T ss_pred eEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999995 6655
No 385
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.07 E-value=0.035 Score=42.71 Aligned_cols=18 Identities=0% Similarity=0.017 Sum_probs=16.2
Q ss_pred EEEEcCCCCchhhhchhhh
Q psy5810 54 FIVHSDTNHTQRCLTSMPF 72 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~ 72 (250)
.+|+|+.|+|||||+. .+
T Consensus 29 ~~i~G~NGsGKStll~-ai 46 (182)
T 3kta_A 29 TAIVGANGSGKSNIGD-AI 46 (182)
T ss_dssp EEEEECTTSSHHHHHH-HH
T ss_pred EEEECCCCCCHHHHHH-HH
Confidence 7999999999999996 54
No 386
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=93.05 E-value=0.03 Score=47.91 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||||++ .+.+
T Consensus 54 ~ll~Gp~G~GKTTLa~-~ia~ 73 (334)
T 1in4_A 54 VLLAGPPGLGKTTLAH-IIAS 73 (334)
T ss_dssp EEEESSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHHH
Confidence 8999999999999996 6665
No 387
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=93.02 E-value=0.03 Score=46.84 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||+. .++.
T Consensus 38 ~~i~G~~G~GKTTl~~-~ia~ 57 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVR-QQAL 57 (296)
T ss_dssp EEEEESTTSSHHHHHH-HHHH
T ss_pred EEEEeCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6655
No 388
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.01 E-value=0.03 Score=42.93 Aligned_cols=21 Identities=0% Similarity=-0.007 Sum_probs=13.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|.|.+||||||+.. .+..
T Consensus 7 ~I~l~G~~GsGKST~a~-~La~ 27 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAH-TLHE 27 (183)
T ss_dssp EEEEECCC----CHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 6643
No 389
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.99 E-value=0.032 Score=46.25 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||+|++ .+.+
T Consensus 76 vll~Gp~GtGKTtl~~-~i~~ 95 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLAR-AVAG 95 (278)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCcChHHHHHH-HHHH
Confidence 8999999999999996 6665
No 390
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.98 E-value=0.041 Score=42.89 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=18.6
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|+|.+||||||+.. .+..
T Consensus 9 ~~I~i~G~~GsGKST~~~-~La~ 30 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAA-LLRS 30 (203)
T ss_dssp EEEEEEECTTSCHHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 459999999999999996 6654
No 391
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.98 E-value=0.032 Score=44.48 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|+. .+..
T Consensus 55 ~ll~G~~G~GKT~la~-~l~~ 74 (242)
T 3bos_A 55 IYLWGPVKSGRTHLIH-AACA 74 (242)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6655
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.96 E-value=0.041 Score=42.27 Aligned_cols=21 Identities=0% Similarity=-0.058 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+++|.+|+||||+.+ .+..
T Consensus 7 ~i~l~G~~GsGKST~~~-~L~~ 27 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSM-ALEE 27 (179)
T ss_dssp EEEEECCTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 48999999999999995 5544
No 393
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.89 E-value=0.04 Score=47.11 Aligned_cols=23 Identities=0% Similarity=-0.078 Sum_probs=18.9
Q ss_pred EEEEEEEcCCCCchhhhchhhhcc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.+-|+|+|.+|||||||++ .+..
T Consensus 92 p~iigI~GpsGSGKSTl~~-~L~~ 114 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSR-VLKA 114 (321)
T ss_dssp CEEEEEECCTTSSHHHHHH-HHHH
T ss_pred CEEEEEECCCCCCHHHHHH-HHHH
Confidence 3459999999999999995 5544
No 394
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=92.88 E-value=0.038 Score=43.65 Aligned_cols=20 Identities=10% Similarity=-0.162 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||+|+. .++.
T Consensus 23 ~~i~G~~GsGKTtl~~-~l~~ 42 (220)
T 2cvh_A 23 TQVYGPYASGKTTLAL-QTGL 42 (220)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6654
No 395
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.86 E-value=0.039 Score=42.51 Aligned_cols=20 Identities=0% Similarity=0.006 Sum_probs=17.2
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|.+||||||+.. .+..
T Consensus 5 I~l~G~~GsGKsT~a~-~La~ 24 (184)
T 2iyv_A 5 AVLVGLPGSGKSTIGR-RLAK 24 (184)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999995 5543
No 396
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.85 E-value=0.033 Score=49.43 Aligned_cols=21 Identities=10% Similarity=-0.009 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++|+|++|+|||||++ .+++
T Consensus 169 ii~I~GpnGSGKTTlL~-allg 189 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLY-AGLQ 189 (418)
T ss_dssp EEEEECSTTSCHHHHHH-HHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHh
Confidence 38999999999999997 6665
No 397
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.83 E-value=0.021 Score=49.53 Aligned_cols=20 Identities=5% Similarity=0.081 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+.+
T Consensus 34 ~~llGpnGsGKSTLLr-~iaG 53 (353)
T 1oxx_K 34 FGILGPSGAGKTTFMR-IIAG 53 (353)
T ss_dssp EEEECSCHHHHHHHHH-HHHT
T ss_pred EEEECCCCCcHHHHHH-HHhC
Confidence 8999999999999995 5555
No 398
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.81 E-value=0.039 Score=50.26 Aligned_cols=20 Identities=15% Similarity=0.089 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|||||||++ .+++
T Consensus 263 i~I~GptGSGKTTlL~-aL~~ 282 (511)
T 2oap_1 263 AIVVGETASGKTTTLN-AIMM 282 (511)
T ss_dssp EEEEESTTSSHHHHHH-HHGG
T ss_pred EEEECCCCCCHHHHHH-HHHh
Confidence 9999999999999997 6665
No 399
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.74 E-value=0.051 Score=43.14 Aligned_cols=21 Identities=5% Similarity=0.186 Sum_probs=17.9
Q ss_pred EEEEEEcCCCCchhhhchhhhc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~ 73 (250)
+.|+|.|.+||||||+.+ .+.
T Consensus 5 ~~I~i~G~~GSGKST~~~-~L~ 25 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN-AFA 25 (218)
T ss_dssp EEEEEECCTTSCHHHHHH-HHH
T ss_pred eEEEEECCCCCCHHHHHH-HHH
Confidence 459999999999999996 554
No 400
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=92.72 E-value=0.041 Score=44.14 Aligned_cols=20 Identities=0% Similarity=-0.014 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||+|+. .++.
T Consensus 27 ~~i~G~~GsGKTtl~~-~l~~ 46 (243)
T 1n0w_A 27 TEMFGEFRTGKTQICH-TLAV 46 (243)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHHH
Confidence 8999999999999996 6665
No 401
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.71 E-value=0.058 Score=42.45 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=20.8
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..++..|+|.|..||||||+.+ .|..
T Consensus 9 ~~~~~iIgltG~~GSGKSTva~-~L~~ 34 (192)
T 2grj_A 9 HHHHMVIGVTGKIGTGKSTVCE-ILKN 34 (192)
T ss_dssp -CCEEEEEEECSTTSSHHHHHH-HHHH
T ss_pred cccceEEEEECCCCCCHHHHHH-HHHH
Confidence 4566779999999999999995 5544
No 402
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.67 E-value=0.033 Score=47.39 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|..|+|||||++ .+.+
T Consensus 7 ~~i~G~~GaGKTTll~-~l~~ 26 (318)
T 1nij_A 7 TLLTGFLGAGKTTLLR-HILN 26 (318)
T ss_dssp EEEEESSSSSCHHHHH-HHHH
T ss_pred EEEEecCCCCHHHHHH-HHHh
Confidence 8899999999999997 6664
No 403
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=92.59 E-value=0.038 Score=47.96 Aligned_cols=21 Identities=0% Similarity=0.004 Sum_probs=17.6
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.++++|.+||||||++. .+.+
T Consensus 159 vi~lvG~nGsGKTTll~-~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLG-KLAH 179 (359)
T ss_dssp EEEEECCTTSCHHHHHH-HHHH
T ss_pred EEEEEcCCCChHHHHHH-HHHh
Confidence 39999999999999996 5443
No 404
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.58 E-value=0.048 Score=44.11 Aligned_cols=22 Identities=5% Similarity=0.131 Sum_probs=18.7
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|.|.+||||||++. .+..
T Consensus 27 ~~i~i~G~~GsGKsT~~~-~l~~ 48 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVIN-EVYH 48 (229)
T ss_dssp EEEEEECCTTSCHHHHHH-HHHH
T ss_pred eEEEEEcCCCCCHHHHHH-HHHH
Confidence 459999999999999996 6654
No 405
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.083 Score=46.94 Aligned_cols=20 Identities=5% Similarity=0.129 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|+||+|||+|+. .+.+
T Consensus 209 iLL~GPPGtGKT~lak-AiA~ 228 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVK-AVAN 228 (428)
T ss_dssp EEEESCTTTTHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6665
No 406
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.55 E-value=0.097 Score=46.10 Aligned_cols=20 Identities=10% Similarity=0.125 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|+||+|||.|.. .+.+
T Consensus 185 vLL~GPPGTGKTllAk-AiA~ 204 (405)
T 4b4t_J 185 VILYGPPGTGKTLLAR-AVAH 204 (405)
T ss_dssp EEEESCSSSSHHHHHH-HHHH
T ss_pred eEEeCCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6766
No 407
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.50 E-value=0.041 Score=44.91 Aligned_cols=20 Identities=5% Similarity=0.135 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||+|+. .+.+
T Consensus 48 vll~G~~GtGKT~la~-~la~ 67 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAK-AIAG 67 (257)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred EEEECcCCCCHHHHHH-HHHH
Confidence 9999999999999995 6655
No 408
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.48 E-value=0.041 Score=43.52 Aligned_cols=20 Identities=0% Similarity=0.172 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|+. .+..
T Consensus 48 ~ll~G~~G~GKT~l~~-~~~~ 67 (250)
T 1njg_A 48 YLFSGTRGVGKTSIAR-LLAK 67 (250)
T ss_dssp EEEECSTTSCHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6654
No 409
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.47 E-value=0.042 Score=43.01 Aligned_cols=21 Identities=10% Similarity=0.116 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
-+++.|++|+|||+|+. .+..
T Consensus 56 ~~~l~G~~GtGKT~la~-~i~~ 76 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLA-AIAN 76 (202)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHH
Confidence 39999999999999995 6655
No 410
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.46 E-value=0.06 Score=43.33 Aligned_cols=20 Identities=5% Similarity=0.051 Sum_probs=16.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|+|||||+|... ++..
T Consensus 32 I~llGpPGsGKgTqa~-~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCE-KLVQ 51 (217)
T ss_dssp EEEECCTTCCHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 6789999999999986 5554
No 411
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.40 E-value=0.15 Score=45.42 Aligned_cols=20 Identities=5% Similarity=0.132 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|+||+|||+|+. .+.+
T Consensus 218 vLL~GPPGtGKTllAk-AiA~ 237 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAK-AVAA 237 (437)
T ss_dssp EEEESCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHHH
Confidence 9999999999999996 6666
No 412
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.36 E-value=0.041 Score=49.45 Aligned_cols=20 Identities=15% Similarity=0.469 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+++
T Consensus 141 v~IvGpnGsGKSTLlr-~L~G 160 (460)
T 2npi_A 141 VVIVGGSQTGKTSLSR-TLCS 160 (460)
T ss_dssp EEEEESTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 9999999999999995 6655
No 413
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.33 E-value=0.056 Score=44.11 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=19.4
Q ss_pred cEEEEEEEcCCCCchhhhchhhhcc
Q psy5810 50 HHVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 50 ~~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+.+.|+|.|.+||||||+.. .+..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~-~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCA-KIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHH-HHHH
T ss_pred CcEEEEEECCCCCCHHHHHH-HHHH
Confidence 33569999999999999995 5544
No 414
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.32 E-value=0.043 Score=44.95 Aligned_cols=22 Identities=0% Similarity=0.021 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+++|.+||||||+.. .+..
T Consensus 33 ~~i~l~G~~GsGKSTla~-~L~~ 54 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHR-IKQK 54 (253)
T ss_dssp EEEEEESCGGGTTHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 459999999999999995 5544
No 415
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=92.30 E-value=0.043 Score=49.64 Aligned_cols=20 Identities=0% Similarity=0.003 Sum_probs=17.1
Q ss_pred EEEEEcCCCCchhhhchhhhc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~ 73 (250)
.++|+|.+|||||||+. .+.
T Consensus 295 VI~LVGpNGSGKTTLl~-~LA 314 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIG-KLA 314 (503)
T ss_dssp EEEEECCTTSSHHHHHH-HHH
T ss_pred EEEEECCCcccHHHHHH-HHH
Confidence 39999999999999996 543
No 416
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.30 E-value=0.045 Score=43.36 Aligned_cols=22 Identities=5% Similarity=-0.008 Sum_probs=18.2
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+++|.+|+||||+.. .+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~-~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAV-ELEH 47 (211)
T ss_dssp EEEEEECSTTSSHHHHHH-HHHH
T ss_pred CEEEEECCCCCCHHHHHH-HHHH
Confidence 349999999999999995 5544
No 417
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=92.27 E-value=0.054 Score=50.03 Aligned_cols=20 Identities=5% Similarity=0.072 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||||++ .+.+
T Consensus 372 ~~ivG~sGsGKSTLl~-~l~g 391 (582)
T 3b60_A 372 VALVGRSGSGKSTIAS-LITR 391 (582)
T ss_dssp EEEEECTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhh
Confidence 9999999999999996 5555
No 418
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.22 E-value=0.049 Score=47.05 Aligned_cols=21 Identities=10% Similarity=0.180 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++|+|++|+|||||++ .+.+
T Consensus 73 ~~gIiG~nGaGKTTLl~-~I~g 93 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLG-MICN 93 (347)
T ss_dssp EEEEEECTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHhc
Confidence 39999999999999996 6665
No 419
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.16 E-value=0.056 Score=40.97 Aligned_cols=20 Identities=5% Similarity=0.047 Sum_probs=17.3
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|.|.+||||||+.. .+..
T Consensus 10 i~l~G~~GsGKSTva~-~La~ 29 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQ-ELGL 29 (168)
T ss_dssp EEEESCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999995 5544
No 420
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=92.13 E-value=0.066 Score=49.42 Aligned_cols=20 Identities=5% Similarity=-0.086 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||||++ .+.+
T Consensus 370 ~~ivG~sGsGKSTll~-~l~g 389 (578)
T 4a82_A 370 VAFVGMSGGGKSTLIN-LIPR 389 (578)
T ss_dssp EEEECSTTSSHHHHHT-TTTT
T ss_pred EEEECCCCChHHHHHH-HHhc
Confidence 9999999999999996 5554
No 421
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.08 E-value=0.049 Score=44.82 Aligned_cols=20 Identities=0% Similarity=-0.039 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|.+|+||||+.+ .+..
T Consensus 51 i~l~G~~GsGKSTl~~-~La~ 70 (250)
T 3nwj_A 51 MYLVGMMGSGKTTVGK-IMAR 70 (250)
T ss_dssp EEEECSTTSCHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999995 5544
No 422
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=92.05 E-value=0.058 Score=49.96 Aligned_cols=20 Identities=5% Similarity=-0.021 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 373 ~~ivG~sGsGKSTLl~-~l~g 392 (595)
T 2yl4_A 373 TALVGPSGSGKSTVLS-LLLR 392 (595)
T ss_dssp EEEECCTTSSSTHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 9999999999999996 5555
No 423
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.01 E-value=0.12 Score=45.78 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=18.1
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|+||+|||+|+. .+.+
T Consensus 219 vLLyGPPGTGKTlLAk-AiA~ 238 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAK-AVAN 238 (437)
T ss_dssp EEEESSTTTTHHHHHH-HHHH
T ss_pred CceECCCCchHHHHHH-HHHH
Confidence 9999999999999996 6766
No 424
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=92.00 E-value=0.1 Score=45.45 Aligned_cols=20 Identities=5% Similarity=0.233 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|.|++|+|||+|+. .+..
T Consensus 151 vLL~GppGtGKT~la~-aia~ 170 (389)
T 3vfd_A 151 LLLFGPPGNGKTMLAK-AVAA 170 (389)
T ss_dssp EEEESSTTSCHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999995 6655
No 425
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.88 E-value=0.065 Score=49.71 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||||++ .+.+
T Consensus 384 ~~ivG~sGsGKSTll~-~l~g 403 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVN-LLMR 403 (598)
T ss_dssp EEEECCTTSSTTHHHH-HHTT
T ss_pred EEEECCCCCcHHHHHH-HHhc
Confidence 9999999999999996 5555
No 426
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.87 E-value=0.061 Score=49.65 Aligned_cols=20 Identities=5% Similarity=0.150 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||||++ .+.+
T Consensus 372 ~~ivG~sGsGKSTll~-~l~g 391 (582)
T 3b5x_A 372 VALVGRSGSGKSTIAN-LFTR 391 (582)
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 9999999999999996 5555
No 427
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.80 E-value=0.066 Score=49.06 Aligned_cols=20 Identities=0% Similarity=-0.066 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 50 ~~LvG~NGaGKSTLlk-~l~G 69 (538)
T 1yqt_A 50 VGIVGPNGTGKSTAVK-ILAG 69 (538)
T ss_dssp EEEECCTTSSHHHHHH-HHHT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 6655
No 428
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.71 E-value=0.063 Score=44.80 Aligned_cols=21 Identities=5% Similarity=0.097 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+||||||+.. .+..
T Consensus 4 ~I~l~G~~GsGKST~a~-~L~~ 24 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR-EFIA 24 (301)
T ss_dssp EEEEECCTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 48999999999999996 6654
No 429
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=91.67 E-value=0.061 Score=47.99 Aligned_cols=21 Identities=5% Similarity=-0.005 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++|+|++|+|||||++ .+.+
T Consensus 159 ~~~IvG~sGsGKSTLl~-~Iag 179 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLG-MMAR 179 (438)
T ss_dssp EEEEEECTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHhc
Confidence 39999999999999996 6655
No 430
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=91.60 E-value=0.058 Score=44.59 Aligned_cols=20 Identities=5% Similarity=0.154 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+|+. .+..
T Consensus 54 ~ll~G~~GtGKT~la~-~la~ 73 (285)
T 3h4m_A 54 ILLYGPPGTGKTLLAK-AVAT 73 (285)
T ss_dssp EEEESSSSSSHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHHH
Confidence 9999999999999995 6655
No 431
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.60 E-value=0.066 Score=42.95 Aligned_cols=20 Identities=5% Similarity=0.168 Sum_probs=17.0
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||+|+. +++.
T Consensus 26 ~~i~G~~GsGKTtl~~-~~~~ 45 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQ-QFLW 45 (247)
T ss_dssp EEEEECTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999975 5544
No 432
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.59 E-value=0.068 Score=39.63 Aligned_cols=20 Identities=5% Similarity=0.149 Sum_probs=17.1
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|++|+|||++.. .+..
T Consensus 30 vll~G~~GtGKt~lA~-~i~~ 49 (143)
T 3co5_A 30 VFLTGEAGSPFETVAR-YFHK 49 (143)
T ss_dssp EEEEEETTCCHHHHHG-GGCC
T ss_pred EEEECCCCccHHHHHH-HHHH
Confidence 9999999999999994 4544
No 433
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.58 E-value=0.072 Score=40.01 Aligned_cols=19 Identities=5% Similarity=0.106 Sum_probs=16.4
Q ss_pred EEEEcCCCCchhhhchhhhc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~ 73 (250)
.+|+|+.|+|||+|+. .+.
T Consensus 26 ~~I~G~NGsGKStil~-Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLD-AIL 44 (149)
T ss_dssp EEEECCTTSSHHHHHH-HHH
T ss_pred EEEECCCCCCHHHHHH-HHH
Confidence 7899999999999997 543
No 434
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=91.51 E-value=0.066 Score=44.36 Aligned_cols=20 Identities=10% Similarity=-0.014 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||+. .++.
T Consensus 33 ~~i~G~~GsGKTtl~~-~l~~ 52 (279)
T 1nlf_A 33 GALVSPGGAGKSMLAL-QLAA 52 (279)
T ss_dssp EEEEESTTSSHHHHHH-HHHH
T ss_pred EEEEcCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6664
No 435
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=91.50 E-value=0.063 Score=43.62 Aligned_cols=20 Identities=5% Similarity=0.087 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+|+. .+..
T Consensus 42 vll~G~~GtGKT~la~-~la~ 61 (262)
T 2qz4_A 42 ALLLGPPGCGKTLLAK-AVAT 61 (262)
T ss_dssp EEEESCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999995 6655
No 436
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.50 E-value=0.074 Score=49.22 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||||++ .+.+
T Consensus 372 ~~ivG~sGsGKSTll~-~l~g 391 (587)
T 3qf4_A 372 VAVLGETGSGKSTLMN-LIPR 391 (587)
T ss_dssp EEEECSSSSSHHHHHH-TTTT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 9999999999999996 5554
No 437
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=91.47 E-value=0.06 Score=44.81 Aligned_cols=20 Identities=5% Similarity=0.225 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+|+. .+..
T Consensus 57 vll~Gp~GtGKT~la~-~la~ 76 (297)
T 3b9p_A 57 LLLFGPPGNGKTLLAR-AVAT 76 (297)
T ss_dssp EEEESSSSSCHHHHHH-HHHH
T ss_pred EEEECcCCCCHHHHHH-HHHH
Confidence 9999999999999995 6655
No 438
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.46 E-value=0.084 Score=44.00 Aligned_cols=22 Identities=0% Similarity=-0.064 Sum_probs=18.6
Q ss_pred EEEEEEEcCCCCchhhhchhhhc
Q psy5810 51 HVFFIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 51 ~~ki~iiG~~~vGKSsLi~~~~~ 73 (250)
.+.|+|.|.+||||||+.. .+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~-~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQ-RLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHH-HHH
T ss_pred CEEEEEECCCCCCHHHHHH-HHH
Confidence 4569999999999999996 554
No 439
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.46 E-value=0.061 Score=46.06 Aligned_cols=20 Identities=10% Similarity=0.027 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|+. .+..
T Consensus 48 vli~G~~G~GKTtl~~-~l~~ 67 (386)
T 2qby_A 48 IFIYGLTGTGKTAVVK-FVLS 67 (386)
T ss_dssp EEEEECTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6665
No 440
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.41 E-value=0.077 Score=39.38 Aligned_cols=20 Identities=0% Similarity=-0.160 Sum_probs=17.2
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|++|+|||++.. .+..
T Consensus 27 vll~G~~GtGKt~lA~-~i~~ 46 (145)
T 3n70_A 27 VWLYGAPGTGRMTGAR-YLHQ 46 (145)
T ss_dssp EEEESSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999995 5544
No 441
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.28 E-value=0.08 Score=42.09 Aligned_cols=27 Identities=7% Similarity=-0.101 Sum_probs=20.6
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHh
Q psy5810 185 VKFVETSVGLVYKTDELLVGIARQAGL 211 (250)
Q Consensus 185 ~~~~evSa~~~~~I~~lf~~l~~~i~~ 211 (250)
+|.+.+....|.++..+.+..+.....
T Consensus 146 iP~~~lpv~pgrn~a~iiE~aa~n~~l 172 (205)
T 2qmh_A 146 VPKITVPFKVGRNLAIIIEVAAMNFRA 172 (205)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred ccEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 457778888888988888888866553
No 442
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.28 E-value=0.066 Score=48.34 Aligned_cols=20 Identities=5% Similarity=0.089 Sum_probs=17.2
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||++ .+.+
T Consensus 32 ~~liG~nGsGKSTLl~-~l~G 51 (483)
T 3euj_A 32 TTLSGGNGAGKSTTMA-GFVT 51 (483)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHhc
Confidence 8999999999999996 5544
No 443
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=91.25 E-value=0.075 Score=43.17 Aligned_cols=26 Identities=12% Similarity=0.092 Sum_probs=19.1
Q ss_pred cccEEEEEEEcCCCCchhhhchhhhcc
Q psy5810 48 TYHHVFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 48 ~~~~~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..+++++.|+|.+||||||+.. ++..
T Consensus 5 ~~~~~~~~~~G~pGsGKsT~a~-~L~~ 30 (230)
T 3gmt_A 5 HHHHMRLILLGAPGAGKGTQAN-FIKE 30 (230)
T ss_dssp ----CEEEEECCTTSCHHHHHH-HHHH
T ss_pred cccccceeeECCCCCCHHHHHH-HHHH
Confidence 3567889999999999999995 5544
No 444
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=91.23 E-value=0.066 Score=45.29 Aligned_cols=20 Identities=5% Similarity=0.046 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|+. .+.+
T Consensus 40 lll~G~~GtGKT~la~-~i~~ 59 (324)
T 1l8q_A 40 IFIYGSVGTGKTHLLQ-AAGN 59 (324)
T ss_dssp EEEECSSSSSHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHHH
Confidence 9999999999999995 6655
No 445
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.17 E-value=0.076 Score=49.36 Aligned_cols=20 Identities=0% Similarity=-0.097 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 106 ~~LvGpNGaGKSTLLk-iL~G 125 (608)
T 3j16_B 106 LGLVGTNGIGKSTALK-ILAG 125 (608)
T ss_dssp EEEECCTTSSHHHHHH-HHHT
T ss_pred EEEECCCCChHHHHHH-HHhc
Confidence 9999999999999996 6655
No 446
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=91.17 E-value=0.077 Score=46.07 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=16.5
Q ss_pred EEEEcCCCCchhhhchhhhc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFC 73 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~ 73 (250)
.+|+|+.|+|||||++ .++
T Consensus 26 ~~i~G~NGaGKTTll~-ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLFE-AIS 44 (365)
T ss_dssp EEEECCTTSSHHHHHH-HHH
T ss_pred EEEECCCCCCHHHHHH-HHH
Confidence 6699999999999997 544
No 447
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.11 E-value=0.15 Score=45.08 Aligned_cols=21 Identities=0% Similarity=-0.074 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
-|+|+|.+||||||+.. ++..
T Consensus 260 lIil~G~pGSGKSTla~-~L~~ 280 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQ-EHLV 280 (416)
T ss_dssp EEEEESCTTSSHHHHHH-HHTG
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 48999999999999996 6655
No 448
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.06 E-value=0.08 Score=43.07 Aligned_cols=22 Identities=5% Similarity=0.146 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
+.|+|.|.+|+||||+.+ .+..
T Consensus 10 ~~i~i~G~~GsGKsTla~-~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSR-GLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHH-HHHH
T ss_pred eEEEEECCCCCCHHHHHH-HHHH
Confidence 459999999999999996 5553
No 449
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=91.03 E-value=0.072 Score=46.57 Aligned_cols=20 Identities=5% Similarity=0.245 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|++|+|||||+. .+.+
T Consensus 172 i~l~G~~GsGKSTl~~-~l~~ 191 (377)
T 1svm_A 172 WLFKGPIDSGKTTLAA-ALLE 191 (377)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHh
Confidence 8999999999999996 6654
No 450
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.02 E-value=0.091 Score=48.86 Aligned_cols=20 Identities=0% Similarity=-0.066 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 120 ~~LiG~NGsGKSTLlk-iL~G 139 (607)
T 3bk7_A 120 VGIVGPNGTGKTTAVK-ILAG 139 (607)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCChHHHHHH-HHhC
Confidence 8999999999999996 6655
No 451
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.97 E-value=0.074 Score=45.37 Aligned_cols=20 Identities=0% Similarity=0.072 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+||||++. .+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~-~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCM-ALLE 58 (354)
T ss_dssp EEEECSTTSSHHHHHH-THHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6655
No 452
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=90.83 E-value=0.078 Score=44.30 Aligned_cols=20 Identities=0% Similarity=0.074 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+|+. .+..
T Consensus 70 vll~G~~GtGKT~la~-~la~ 89 (309)
T 3syl_A 70 MSFTGNPGTGKTTVAL-KMAG 89 (309)
T ss_dssp EEEEECTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999995 5554
No 453
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.79 E-value=0.077 Score=44.70 Aligned_cols=62 Identities=8% Similarity=-0.029 Sum_probs=35.0
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEe
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evS 191 (250)
..+.+++|.|.+.. .+.+..+...+. .-+. .-+|.||.|.... ...+...+...+.|+..++
T Consensus 212 ~~~~~~lVl~at~~--~~~~~~~~~~~~----~l~~-~giVltk~D~~~~----~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 212 SSIQSFLVLSATAK--YEDMKHIVKRFS----SVPV-NQYIFTKIDETTS----LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp TTEEEEEEEETTBC--HHHHHHHTTTTS----SSCC-CEEEEECTTTCSC----CHHHHHHHHTCSCCCSEEC
T ss_pred CCCeEEEEEECCCC--HHHHHHHHHHHh----cCCC-CEEEEeCCCcccc----hhHHHHHHHHHCcCEEEEE
Confidence 36788889987643 234444433331 1122 3455699996532 2255667777888855543
No 454
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=90.76 E-value=0.079 Score=44.40 Aligned_cols=20 Identities=0% Similarity=-0.059 Sum_probs=17.0
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+|.. .+..
T Consensus 39 lLl~GppGtGKT~la~-aiA~ 58 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCE-LVFR 58 (293)
T ss_dssp EEEEECTTSCHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 7788999999999995 6655
No 455
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=90.74 E-value=0.078 Score=44.53 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|++|+|||+|+. .+.+
T Consensus 52 vLL~Gp~GtGKT~la~-ala~ 71 (301)
T 3cf0_A 52 VLFYGPPGCGKTLLAK-AIAN 71 (301)
T ss_dssp EEEECSSSSSHHHHHH-HHHH
T ss_pred EEEECCCCcCHHHHHH-HHHH
Confidence 9999999999999995 6655
No 456
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.73 E-value=0.081 Score=45.50 Aligned_cols=20 Identities=0% Similarity=-0.076 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|+. .+..
T Consensus 47 ~li~G~~G~GKTtl~~-~l~~ 66 (389)
T 1fnn_A 47 ATLLGRPGTGKTVTLR-KLWE 66 (389)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6655
No 457
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=90.67 E-value=0.083 Score=44.60 Aligned_cols=20 Identities=10% Similarity=0.081 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|+. .+..
T Consensus 34 v~i~G~~G~GKT~Ll~-~~~~ 53 (350)
T 2qen_A 34 TLLLGIRRVGKSSLLR-AFLN 53 (350)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCcCCHHHHHH-HHHH
Confidence 8999999999999996 6665
No 458
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.55 E-value=0.096 Score=43.53 Aligned_cols=20 Identities=5% Similarity=0.101 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+++. .+..
T Consensus 53 vll~G~~GtGKT~la~-~la~ 72 (310)
T 1ofh_A 53 ILMIGPTGVGKTEIAR-RLAK 72 (310)
T ss_dssp EEEECCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999995 6654
No 459
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=90.49 E-value=0.085 Score=44.62 Aligned_cols=21 Identities=5% Similarity=-0.094 Sum_probs=18.2
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
-++|.|++|+|||+|+. .+..
T Consensus 32 ~v~i~G~~G~GKT~L~~-~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIK-IGIN 52 (357)
T ss_dssp EEEEEESTTSSHHHHHH-HHHH
T ss_pred cEEEECCCCCCHHHHHH-HHHH
Confidence 38999999999999996 6655
No 460
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.39 E-value=0.11 Score=52.57 Aligned_cols=21 Identities=0% Similarity=-0.026 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
||+|+|++|+|||||++ .+..
T Consensus 1107 ~vaIVG~SGsGKSTL~~-lL~r 1127 (1321)
T 4f4c_A 1107 TLALVGPSGCGKSTVVA-LLER 1127 (1321)
T ss_dssp EEEEECSTTSSTTSHHH-HHTT
T ss_pred EEEEECCCCChHHHHHH-HHhc
Confidence 39999999999999996 5544
No 461
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.36 E-value=0.1 Score=47.71 Aligned_cols=20 Identities=0% Similarity=-0.031 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 297 ~~i~G~nGsGKSTLl~-~l~G 316 (538)
T 3ozx_A 297 IGILGPNGIGKTTFAR-ILVG 316 (538)
T ss_dssp EEEECCTTSSHHHHHH-HHTT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 6655
No 462
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=90.30 E-value=0.095 Score=40.90 Aligned_cols=21 Identities=0% Similarity=0.129 Sum_probs=17.7
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|.|.+|+||||+.. .+..
T Consensus 4 ~i~i~G~~GsGKst~~~-~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR-RVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 38999999999999995 5544
No 463
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.26 E-value=0.12 Score=43.83 Aligned_cols=20 Identities=10% Similarity=0.120 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|++|||||+|.. .+..
T Consensus 13 i~i~GptgsGKt~la~-~La~ 32 (316)
T 3foz_A 13 IFLMGPTASGKTALAI-ELRK 32 (316)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred EEEECCCccCHHHHHH-HHHH
Confidence 8899999999999996 6654
No 464
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.23 E-value=0.12 Score=41.71 Aligned_cols=22 Identities=0% Similarity=-0.008 Sum_probs=18.5
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|+|.|..||||||+++ .+..
T Consensus 3 ~~i~~~G~~g~GKtt~~~-~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVK-LLTK 24 (241)
T ss_dssp EEEEEEECTTSSHHHHHH-HHHH
T ss_pred eEEEEEcCCCCCHHHHHH-HHHH
Confidence 459999999999999996 5554
No 465
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=90.20 E-value=0.11 Score=42.80 Aligned_cols=21 Identities=5% Similarity=0.170 Sum_probs=18.1
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
-+++.|++|+|||+|+. .+..
T Consensus 66 ~vLl~G~~GtGKT~la~-~ia~ 86 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAA-KIAE 86 (272)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred EEEEECCCCCcHHHHHH-HHHH
Confidence 49999999999999995 6655
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.11 E-value=0.1 Score=44.28 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=35.6
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEEEEeeCCCccCCCccCHHHHHHHHHHhCCeEEEEec
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV 192 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa 192 (250)
.++.+++|.|.+... +.+.. ...+.+. .++ .-+|.||.|.... --.+...+...+.|+..++.
T Consensus 222 ~p~~vllVlda~t~~--~~l~~-a~~~~~~---~~i-~gvVlTk~D~~~~----gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 222 APHETLLVIDATTGQ--NGLVQ-AKIFKEA---VNV-TGIILTKLDGTAK----GGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp CCSEEEEEEEGGGHH--HHHHH-HHHHHHH---SCC-CEEEEECGGGCSC----TTHHHHHHHHHCCCEEEEEC
T ss_pred CCcEEEEEEECCCCH--HHHHH-HHHHHhc---CCC-CEEEEeCCCCccc----hHHHHHHHHHHCCCEEEEeC
Confidence 478889999886432 22221 2223221 233 3445699996432 12366777888988766643
No 467
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.02 E-value=0.11 Score=44.85 Aligned_cols=20 Identities=10% Similarity=0.057 Sum_probs=18.0
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+.|+|++|+|||||+. .++.
T Consensus 134 ~~I~G~~GsGKTTL~~-~l~~ 153 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAH-TLAV 153 (349)
T ss_dssp EEEEESTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6665
No 468
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.99 E-value=0.12 Score=44.52 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=18.3
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
-|+|+|++|||||+|.. .+..
T Consensus 42 lIvI~GPTgsGKTtLa~-~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSI-DLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHH-HHHT
T ss_pred eEEEECCCCCCHHHHHH-HHHH
Confidence 39999999999999996 6665
No 469
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.98 E-value=0.078 Score=42.40 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=17.2
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+++. .++.
T Consensus 61 ili~GPPGtGKTt~a~-ala~ 80 (212)
T 1tue_A 61 LVFCGPANTGKSYFGM-SFIH 80 (212)
T ss_dssp EEEESCGGGCHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999998885 5554
No 470
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.96 E-value=0.12 Score=47.21 Aligned_cols=20 Identities=0% Similarity=-0.026 Sum_probs=17.9
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 315 ~~i~G~NGsGKSTLlk-~l~G 334 (538)
T 1yqt_A 315 IGIVGPNGIGKTTFVK-MLAG 334 (538)
T ss_dssp EEEECCTTSSHHHHHH-HHHT
T ss_pred EEEECCCCCCHHHHHH-HHhC
Confidence 8999999999999996 6665
No 471
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.92 E-value=0.1 Score=44.53 Aligned_cols=20 Identities=0% Similarity=0.046 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+++. .+..
T Consensus 49 ~ll~Gp~G~GKTtla~-~la~ 68 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV-ALAR 68 (340)
T ss_dssp EEEECSSSSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6665
No 472
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.89 E-value=0.2 Score=44.94 Aligned_cols=20 Identities=0% Similarity=0.047 Sum_probs=18.0
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|+||+|||+|.. .+.+
T Consensus 246 ILLyGPPGTGKTlLAk-AiA~ 265 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCAR-AVAN 265 (467)
T ss_dssp EEECSCTTSSHHHHHH-HHHH
T ss_pred eEeeCCCCCcHHHHHH-HHHh
Confidence 9999999999999995 6665
No 473
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.85 E-value=0.12 Score=48.11 Aligned_cols=20 Identities=0% Similarity=-0.026 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 385 ~~i~G~NGsGKSTLlk-~l~G 404 (607)
T 3bk7_A 385 IGIVGPNGIGKTTFVK-MLAG 404 (607)
T ss_dssp EEEECCTTSSHHHHHH-HHHT
T ss_pred EEEECCCCCCHHHHHH-HHhc
Confidence 8999999999999996 6665
No 474
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=89.84 E-value=0.093 Score=44.96 Aligned_cols=20 Identities=5% Similarity=-0.029 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|+. .+..
T Consensus 47 vll~G~~G~GKT~l~~-~~~~ 66 (387)
T 2v1u_A 47 ALLYGLTGTGKTAVAR-LVLR 66 (387)
T ss_dssp EEECBCTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6655
No 475
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.83 E-value=0.12 Score=44.15 Aligned_cols=21 Identities=10% Similarity=0.078 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|++|||||||.. .+..
T Consensus 7 ~i~i~GptGsGKTtla~-~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAM-ALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 5554
No 476
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=89.79 E-value=0.11 Score=43.42 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=17.4
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||+++. .+..
T Consensus 50 ~ll~G~~GtGKt~la~-~la~ 69 (311)
T 4fcw_A 50 FLFLGPTGVGKTELAK-TLAA 69 (311)
T ss_dssp EEEESCSSSSHHHHHH-HHHH
T ss_pred EEEECCCCcCHHHHHH-HHHH
Confidence 9999999999999995 5554
No 477
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=89.77 E-value=0.12 Score=44.48 Aligned_cols=21 Identities=10% Similarity=0.161 Sum_probs=17.9
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
-|+|+|++|||||||.. .+..
T Consensus 9 lI~I~GptgSGKTtla~-~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSI-EVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred eEEEECCCcCcHHHHHH-HHHH
Confidence 49999999999999996 6554
No 478
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.59 E-value=0.13 Score=43.83 Aligned_cols=20 Identities=5% Similarity=-0.046 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|+|++|||||+|.. .+..
T Consensus 6 i~i~GptgsGKt~la~-~La~ 25 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSV-MLAK 25 (322)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred EEEECCCcCCHHHHHH-HHHH
Confidence 8899999999999996 6654
No 479
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=89.56 E-value=0.13 Score=41.46 Aligned_cols=21 Identities=0% Similarity=0.055 Sum_probs=17.8
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
.|+|+|.+|+||||+.. .+..
T Consensus 18 ~i~i~G~~gsGKst~~~-~l~~ 38 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAK-IIAK 38 (236)
T ss_dssp EEEEECSSCSSHHHHHH-HHHH
T ss_pred EEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999995 5553
No 480
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=89.55 E-value=0.12 Score=48.54 Aligned_cols=16 Identities=13% Similarity=0.131 Sum_probs=15.3
Q ss_pred EEEEcCCCCchhhhch
Q psy5810 54 FIVHSDTNHTQRCLTS 69 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~ 69 (250)
++|+|++|+|||||++
T Consensus 351 vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 351 VAVTGVSGSGKSTLVN 366 (670)
T ss_dssp EEEECSTTSSHHHHHT
T ss_pred EEEEeeCCCCHHHHHH
Confidence 8999999999999996
No 481
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.55 E-value=0.11 Score=44.00 Aligned_cols=20 Identities=0% Similarity=0.009 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+++. .+..
T Consensus 61 ~ll~G~~G~GKT~la~-~la~ 80 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTIL-ALTK 80 (353)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6665
No 482
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=89.53 E-value=2.8 Score=34.76 Aligned_cols=63 Identities=11% Similarity=0.116 Sum_probs=44.0
Q ss_pred CCcEEEEEEeCCCHHhHHHHHHHHHHHHhhhCCCCCcEE-EEeeCCCccCCCccCHHHHHHHHHHhCCeEEE
Q psy5810 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYAWGVKFVE 189 (250)
Q Consensus 119 ~ad~iilV~D~~~~~Sf~~~~~~~~~i~~~~~~~~~pii-lv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e 189 (250)
.+|.+|+|.+. +..+...+..+++.+.......+.+++ +|.|+.+.. ....++.+.++.+++.
T Consensus 179 ~aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~~-------~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 179 HADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRAT-------DEVDRFCKETNFRRLA 242 (307)
T ss_dssp TCSEEEEEECS-SHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSCC-------HHHHHHHHHHTCCEEE
T ss_pred HCCEEEEEecC-cHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCcH-------HHHHHHHHHcCCCcee
Confidence 68999999865 466777777777777554334566654 889999831 3466677778888664
No 483
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=89.48 E-value=0.11 Score=44.08 Aligned_cols=20 Identities=5% Similarity=0.205 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|++|+|||+|+. .+..
T Consensus 48 iLL~GppGtGKT~la~-ala~ 67 (322)
T 1xwi_A 48 ILLFGPPGTGKSYLAK-AVAT 67 (322)
T ss_dssp EEEESSSSSCHHHHHH-HHHH
T ss_pred EEEECCCCccHHHHHH-HHHH
Confidence 9999999999999995 6665
No 484
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=89.42 E-value=0.46 Score=41.81 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|.|++|||||+|.. .+..
T Consensus 5 i~i~GptgsGKttla~-~La~ 24 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSI-QLAQ 24 (409)
T ss_dssp EEEEECSSSSHHHHHH-HHHH
T ss_pred EEEECcchhhHHHHHH-HHHH
Confidence 8899999999999996 6654
No 485
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.26 E-value=0.14 Score=47.64 Aligned_cols=20 Identities=5% Similarity=0.217 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|+|+.|+|||||++ .+.+
T Consensus 381 v~iiG~NGsGKSTLlk-~l~G 400 (608)
T 3j16_B 381 LVMMGENGTGKTTLIK-LLAG 400 (608)
T ss_dssp EEEESCTTSSHHHHHH-HHHT
T ss_pred EEEECCCCCcHHHHHH-HHhc
Confidence 7999999999999996 6655
No 486
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.18 E-value=0.14 Score=43.93 Aligned_cols=20 Identities=0% Similarity=0.170 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+|+. .+..
T Consensus 73 vLl~GppGtGKT~la~-~la~ 92 (368)
T 3uk6_A 73 VLIAGQPGTGKTAIAM-GMAQ 92 (368)
T ss_dssp EEEEESTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999995 6654
No 487
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.04 E-value=0.13 Score=44.19 Aligned_cols=20 Identities=5% Similarity=-0.036 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|+. .+..
T Consensus 48 vll~G~~G~GKT~la~-~l~~ 67 (384)
T 2qby_B 48 NLFLGLTGTGKTFVSK-YIFN 67 (384)
T ss_dssp EEEEECTTSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6655
No 488
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.00 E-value=0.13 Score=43.58 Aligned_cols=20 Identities=5% Similarity=0.170 Sum_probs=17.8
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|++.|++|+|||+|+. .+..
T Consensus 54 vLl~GppGtGKT~la~-aia~ 73 (322)
T 3eie_A 54 ILLYGPPGTGKSYLAK-AVAT 73 (322)
T ss_dssp EEEECSSSSCHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHHH
Confidence 9999999999999995 6655
No 489
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.96 E-value=0.13 Score=43.51 Aligned_cols=20 Identities=5% Similarity=0.074 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|.|++|+|||+|+. .+..
T Consensus 58 vll~G~~GtGKT~la~-~ia~ 77 (338)
T 3pfi_A 58 ILFSGPAGLGKTTLAN-IISY 77 (338)
T ss_dssp EEEECSTTSSHHHHHH-HHHH
T ss_pred EEEECcCCCCHHHHHH-HHHH
Confidence 9999999999999995 6654
No 490
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.95 E-value=0.19 Score=40.18 Aligned_cols=22 Identities=5% Similarity=0.098 Sum_probs=18.4
Q ss_pred EEEEEEcCCCCchhhhchhhhcc
Q psy5810 52 VFFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 52 ~ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
..|++.|.+|+||||++. .+..
T Consensus 7 ~~i~~eG~~gsGKsT~~~-~l~~ 28 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRD-YLAE 28 (213)
T ss_dssp EEEEEECSTTSSHHHHHH-HHHH
T ss_pred eEEEEEcCCCCCHHHHHH-HHHH
Confidence 459999999999999996 5543
No 491
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=88.93 E-value=0.14 Score=44.98 Aligned_cols=42 Identities=10% Similarity=-0.036 Sum_probs=25.2
Q ss_pred EEEEcCCCCchhhhchhhhccccccccccccCceeEEEEEeCCC
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCSQVENFVQTYHPDVFFIVYSDTNH 97 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~~~~~~~~~~~~~~~~i~i~Dt~g 97 (250)
++|+|++|+|||||+. .++-. .......+..-+...++|+-+
T Consensus 181 ~~I~G~sGsGKTTLl~-~la~~-~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCH-TLAVT-CQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHH-HHHHH-TTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHH-HHHHH-hccCcccCCCCCcEEEEeCCC
Confidence 8999999999999996 55421 112222222223444567654
No 492
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=88.93 E-value=0.063 Score=43.97 Aligned_cols=20 Identities=5% Similarity=0.124 Sum_probs=17.6
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
+++.|++|+|||+|+. .+..
T Consensus 47 vll~G~~GtGKT~la~-~la~ 66 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAK-AVAG 66 (268)
T ss_dssp CCCBCSSCSSHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHHH
Confidence 8999999999999995 6655
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=88.91 E-value=0.14 Score=43.36 Aligned_cols=21 Identities=10% Similarity=0.067 Sum_probs=18.0
Q ss_pred EEEEEcCCCCchhhhchhhhcc
Q psy5810 53 FFIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 53 ki~iiG~~~vGKSsLi~~~~~~ 74 (250)
-+++.|++|+|||.|+. .+..
T Consensus 154 ~lll~G~~GtGKT~La~-aia~ 174 (308)
T 2qgz_A 154 GLYLYGDMGIGKSYLLA-AMAH 174 (308)
T ss_dssp EEEEECSTTSSHHHHHH-HHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHH
Confidence 49999999999999996 6554
No 494
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=88.90 E-value=0.16 Score=40.10 Aligned_cols=16 Identities=6% Similarity=0.129 Sum_probs=15.1
Q ss_pred EEEEcCCCCchhhhch
Q psy5810 54 FIVHSDTNHTQRCLTS 69 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~ 69 (250)
.+|+|+.|+|||||+.
T Consensus 26 ~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEEcCCCCCHHHHHH
Confidence 7899999999999996
No 495
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=88.82 E-value=0.21 Score=40.45 Aligned_cols=26 Identities=12% Similarity=0.117 Sum_probs=18.4
Q ss_pred cccEEEEEEE--cCCCCchhhhchhhhcc
Q psy5810 48 TYHHVFFIVH--SDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 48 ~~~~~ki~ii--G~~~vGKSsLi~~~~~~ 74 (250)
+|-.=||+|+ |.++.|||+|++ ++.+
T Consensus 24 ~~P~nkilvl~~~~~~~~~~~~~~-~lf~ 51 (233)
T 3uc9_A 24 QYPQNKILVLSDHPHNFLKTQFLQ-DLFH 51 (233)
T ss_dssp CCCCCEEEEEEEGGGHHHHHHHHH-HHHC
T ss_pred ecCCCceEEEecCcccccHHHHHH-HHhc
Confidence 4433345555 999999999997 5555
No 496
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=88.75 E-value=0.16 Score=39.54 Aligned_cols=16 Identities=0% Similarity=-0.108 Sum_probs=14.7
Q ss_pred EEEEcCCCCchhhhch
Q psy5810 54 FIVHSDTNHTQRCLTS 69 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~ 69 (250)
+++.|++|+||||++.
T Consensus 6 ~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 6 TVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999999985
No 497
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.64 E-value=0.17 Score=41.39 Aligned_cols=20 Identities=5% Similarity=0.162 Sum_probs=17.3
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
|+|.|++|+|||+|+. .+..
T Consensus 32 vll~G~~GtGKt~la~-~i~~ 51 (265)
T 2bjv_A 32 VLIIGERGTGKELIAS-RLHY 51 (265)
T ss_dssp EEEECCTTSCHHHHHH-HHHH
T ss_pred EEEECCCCCcHHHHHH-HHHH
Confidence 9999999999999995 5554
No 498
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.56 E-value=0.16 Score=45.58 Aligned_cols=20 Identities=0% Similarity=0.101 Sum_probs=17.5
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++++|++|+|||+++. .+..
T Consensus 204 ~LL~G~pG~GKT~la~-~la~ 223 (468)
T 3pxg_A 204 PVLIGEPGVGKTAIAE-GLAQ 223 (468)
T ss_dssp EEEESCTTTTTHHHHH-HHHH
T ss_pred eEEECCCCCCHHHHHH-HHHH
Confidence 8999999999999996 6554
No 499
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=88.54 E-value=0.17 Score=39.30 Aligned_cols=28 Identities=14% Similarity=0.043 Sum_probs=21.7
Q ss_pred CeEEEEecCCCCCHHHHHHHHHHHHHhh
Q psy5810 185 VKFVETSVGLVYKTDELLVGIARQAGLN 212 (250)
Q Consensus 185 ~~~~evSa~~~~~I~~lf~~l~~~i~~~ 212 (250)
+|.+.+-...|-|+-.+.+..+.....+
T Consensus 128 iP~i~iPv~~GRn~a~iiE~Aa~n~~lk 155 (181)
T 3tqf_A 128 VPKILFPIHPGRNLPLLIETLVRNHRLK 155 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred ccEEEeccCCCCcHHHHHHHHHHHHHHH
Confidence 5678888899999999888887655443
No 500
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=88.51 E-value=0.14 Score=45.48 Aligned_cols=20 Identities=5% Similarity=0.086 Sum_probs=17.7
Q ss_pred EEEEcCCCCchhhhchhhhcc
Q psy5810 54 FIVHSDTNHTQRCLTSMPFCS 74 (250)
Q Consensus 54 i~iiG~~~vGKSsLi~~~~~~ 74 (250)
++|.|++|+|||+|+. .+.+
T Consensus 133 lll~Gp~G~GKTtLa~-aia~ 152 (440)
T 2z4s_A 133 LFIYGGVGLGKTHLLQ-SIGN 152 (440)
T ss_dssp EEEECSSSSSHHHHHH-HHHH
T ss_pred EEEECCCCCCHHHHHH-HHHH
Confidence 9999999999999996 6655
Done!