RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5810
(250 letters)
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 90.5 bits (225), Expect = 2e-22
Identities = 35/97 (36%), Positives = 59/97 (60%), Gaps = 2/97 (2%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+ S+G+ A
Sbjct: 113 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACA 172
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNK 217
+ KF+ETS + + EL GI RQ + +R+
Sbjct: 173 VVFDCKFIETSAAVQHNVKELFEGIVRQ--VRLRRDS 207
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 86.1 bits (214), Expect = 4e-21
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
+VIVYS+ +R +F+ A ++ L + +ILV NKADL R R+V+ +G+ A
Sbjct: 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVV 140
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNK 217
+ KF+ETS L + EL G+ RQ L +R
Sbjct: 141 FDCKFIETSATLQHNVAELFEGVVRQ--LRLRRRD 173
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 84.5 bits (210), Expect = 2e-20
Identities = 37/95 (38%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
D F+IV+SV +R++F K + L L + + VILV NK+DL R R+V+ +G+ LA
Sbjct: 77 DAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLA 136
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKR 215
K +ETS L + T EL G RQ + +R
Sbjct: 137 GTLSCKHIETSAALHHNTRELFEGAVRQ--IRLRR 169
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 84.6 bits (210), Expect = 2e-20
Identities = 38/94 (40%), Positives = 54/94 (57%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+IV+SV +R++F K + L L + + VILV NK+DL R R+V+ +G+ LA
Sbjct: 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGT 159
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKKRN 216
K +ETS L + T EL G RQ L + RN
Sbjct: 160 LSCKHIETSAALHHNTRELFEGAVRQIRLRRGRN 193
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 83.1 bits (206), Expect = 7e-20
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 3/109 (2%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
D ++IVYS+ +R +F+KA ++ L ++ + +ILV NK+DL R R+V+ S+G+ A
Sbjct: 82 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXA 141
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASY 229
+ KF+ETS + + EL GI RQ + R K ++++A
Sbjct: 142 VVFDXKFIETSAAVQHNVKELFEGIVRQV---RLRRDSKEKNERRLAYQ 187
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 82.5 bits (205), Expect = 7e-20
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
D +VIVYSV ++ +F+KA ++ L ++ + +ILV NK+DL R R+V+ +G+ A
Sbjct: 74 DAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACA 133
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKR 215
+ KF+ETS L + L G+ RQ + +R
Sbjct: 134 VVFDCKFIETSAALHHNVQALFEGVVRQ--IRLRR 166
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 79.5 bits (197), Expect = 1e-18
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKL 179
F++VYS+ R++ ++ + + + + + K E ++LV NK D R+V S+ + L
Sbjct: 76 HAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEAL 135
Query: 180 AYAWGVKFVETS 191
A W F+ETS
Sbjct: 136 ARTWKCAFMETS 147
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 79.2 bits (196), Expect = 3e-18
Identities = 26/69 (37%), Positives = 39/69 (56%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
FV+VY + +R +F++ + L + K +ILV NKADL+ RQV+ +G+KLA
Sbjct: 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATE 161
Query: 183 WGVKFVETS 191
F E S
Sbjct: 162 LACAFYECS 170
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 78.0 bits (193), Expect = 6e-18
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTHSDGKKLA 180
F++VYSV R++F + L+ L ++++ +L+ NK D+ + RQVT ++G LA
Sbjct: 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALA 154
Query: 181 YAWGVKFVETS 191
+G F E S
Sbjct: 155 GRFGCLFFEVS 165
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 77.6 bits (192), Expect = 7e-18
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+IVYSV ++ +F+ + + + K +ILVANK DL R+VT GK++A
Sbjct: 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK 152
Query: 183 WGVKFVETS 191
+ + ++ETS
Sbjct: 153 YNIPYIETS 161
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 77.6 bits (192), Expect = 8e-18
Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 10/104 (9%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
+++VYSV K+F+ + + L D + ++LV NK DL R +++ +GK LA +
Sbjct: 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES 140
Query: 183 WGVKFVETSVGLVYKT----DELLVGIARQAGLNKKRNKLLAKK 222
W F+E+S K ++ I + K K
Sbjct: 141 WNAAFLESSA----KENQTAVDVFRRIILE--AEKMDGACSQGK 178
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 77.3 bits (191), Expect = 1e-17
Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 10/107 (9%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+ + K A
Sbjct: 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 148
Query: 183 WGVKFVETSVGLVYKT----DELLVGIARQAGLNKKRNKLLAKKQKK 225
W V +VETS KT D++ + R+ + ++ + +K K
Sbjct: 149 WNVNYVETSA----KTRANVDKVFFDLMRE--IRARKMEDSKEKNGK 189
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 76.4 bits (189), Expect = 2e-17
Identities = 28/69 (40%), Positives = 44/69 (63%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F++VYS++ +++F+ + M + K + VILV NK DLE R+V+ S+G+ LA
Sbjct: 78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE 137
Query: 183 WGVKFVETS 191
WG F+ETS
Sbjct: 138 WGCPFMETS 146
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 76.9 bits (190), Expect = 2e-17
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
+V+VYSV +F+ E + + L + V+LV NKADL R+V +GKKLA +
Sbjct: 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES 158
Query: 183 WGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKK 225
WG F+E+S T + + ++ + + N ++++
Sbjct: 159 WGATFMESSARENQLTQGIFTKVIQE--IARVENS--YGQERR 197
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 76.4 bits (189), Expect = 2e-17
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+ + K A
Sbjct: 93 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 152
Query: 183 WGVKFVETS 191
W V +VETS
Sbjct: 153 WNVNYVETS 161
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 76.0 bits (188), Expect = 2e-17
Identities = 25/69 (36%), Positives = 38/69 (55%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+ V+S+ E ++F D + + K +LV NK+DLE +RQV+ + K A
Sbjct: 79 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ 138
Query: 183 WGVKFVETS 191
W V +VETS
Sbjct: 139 WNVNYVETS 147
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 75.6 bits (187), Expect = 4e-17
Identities = 21/69 (30%), Positives = 38/69 (55%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F++V+++ +R++F + + + K + V+LV NKADLE +RQV S+ +
Sbjct: 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS 143
Query: 183 WGVKFVETS 191
V + E S
Sbjct: 144 HHVAYFEAS 152
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 74.2 bits (183), Expect = 2e-16
Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 13/118 (11%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKA-VILVANKADLERRRQVTHSDGKKLAY 181
F++V+SV +++ ++ + K + K E V+LV NK D +R +V + + +A
Sbjct: 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR-EVDTREAQAVAQ 141
Query: 182 AWGVKFVETSVGLVYKT----DELLVGIARQAGLNKKRNKLLAKKQKKMASYINNIKQ 235
W F+ETS K EL + +RN L K+ +
Sbjct: 142 EWKCAFMETSA----KMNYNVKELFQELLTLE---TRRNMSLNIDGKRSGKQKRTDRV 192
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 71.4 bits (176), Expect = 9e-16
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F +VYS+ + TF +D+ + + K + +ILV NK DLE R V G+ LA
Sbjct: 78 FALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ 137
Query: 183 W-GVKFVETS 191
W F+E+S
Sbjct: 138 WCNCAFLESS 147
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 71.0 bits (175), Expect = 1e-15
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+ V+++ K+F+ + + K + ++LV NK+DL R V + LA +
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR-TVESRQAQDLARS 136
Query: 183 WGVKFVETS 191
+G+ ++ETS
Sbjct: 137 YGIPYIETS 145
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 71.5 bits (176), Expect = 2e-15
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+ V+++ K+F + + K + ++LV NK DL R V +LA +
Sbjct: 96 FLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTR-TVDTKQAHELAKS 154
Query: 183 WGVKFVETS 191
+G+ F+ETS
Sbjct: 155 YGIPFIETS 163
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 71.1 bits (175), Expect = 2e-15
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F+ V+++ K+F+ + + K + ++LV NK DL R V + LA +
Sbjct: 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSR-TVDTKQAQDLARS 137
Query: 183 WGVKFVETS 191
+G+ F+ETS
Sbjct: 138 YGIPFIETS 146
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 64.1 bits (157), Expect = 7e-13
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL--ERRRQVTHSDGKKLA 180
V V+S+ + +F+ + L + E ++LV + + R + S +KL+
Sbjct: 89 VVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLS 148
Query: 181 YAWG-VKFVETSVGLVYKTDELLVGIARQAGLNKKR 215
+ ET + + +A++ +K+
Sbjct: 149 TDLKRCTYYETCATYGLNVERVFQDVAQKVVALRKK 184
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 62.9 bits (154), Expect = 1e-12
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + + +F+K ++ +K L K +G + + +V NK DLE+ R V+ + + A +
Sbjct: 83 ILVYDITDEDSFQKVKNWVKEL--RKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAES 140
Query: 183 WGVKFVETS 191
G K TS
Sbjct: 141 VGAKHYHTS 149
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 62.9 bits (154), Expect = 1e-12
Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
V+V+S +R++F+ + + +G+ LV NK DL + + + + LA
Sbjct: 79 QACVLVFSTTDRESFEAISSWREKV--VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLA 136
Query: 181 YAWGVKFVETS 191
++F TS
Sbjct: 137 KRLKLRFYRTS 147
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 63.0 bits (154), Expect = 2e-12
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLA 180
V V+VY + +F + + + G +I LV NK DL +RQV+ +G++ A
Sbjct: 89 VAVVVYDITNTNSFHQTSKWIDDV--RTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKA 146
Query: 181 YAWGVKFVETS 191
V F+ETS
Sbjct: 147 KELNVMFIETS 157
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 62.9 bits (154), Expect = 2e-12
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
+IV+ V + +F++A+ ++ L V+ L NK+DL R+VT D + A
Sbjct: 89 IIVFDVTNQASFERAKKWVQEL--QAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQE 146
Query: 183 WGVKFVETS 191
G+ F+ETS
Sbjct: 147 NGLFFMETS 155
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 63.1 bits (154), Expect = 3e-12
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLA 180
V V+VY + +F++ + + G +I LV NK DL +RQV+ +G++ A
Sbjct: 91 VAVVVYDITNVNSFQQTTKWIDDV--RTERGSDVIIMLVGNKTDLADKRQVSIEEGERKA 148
Query: 181 YAWGVKFVETS 191
V F+ETS
Sbjct: 149 KELNVMFIETS 159
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 62.2 bits (152), Expect = 3e-12
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + R+TF L+ ++ VI L+ NK+DLE RR V +G+ A
Sbjct: 98 LLVYDITRRETFNHLTSWLEDA--RQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFARE 155
Query: 183 WGVKFVETS 191
G+ F+ETS
Sbjct: 156 HGLIFMETS 164
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 61.7 bits (151), Expect = 4e-12
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
+IVY + + +TF ++ ++ L ++ V+ + NK DL R+V D K A +
Sbjct: 83 IIVYDITKEETFSTLKNWVREL--RQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADS 140
Query: 183 WGVKFVETS 191
FVETS
Sbjct: 141 IHAIFVETS 149
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 62.2 bits (152), Expect = 4e-12
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
VIVY + ++ +F + +K L ++ E V+ + NK DL R+V D K+ A +
Sbjct: 100 VIVYDITKQDSFYTLKKWVKEL--KEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAES 157
Query: 183 WGVKFVETS 191
G VETS
Sbjct: 158 IGAIVVETS 166
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 61.9 bits (151), Expect = 5e-12
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAY 181
++VY V ++++F + L+ + +Y E LV NK DL ++ V ++ K+ A
Sbjct: 92 IIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 149
Query: 182 AWGVKFVETS 191
+ G+ F+ETS
Sbjct: 150 SLGIPFLETS 159
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 61.9 bits (151), Expect = 6e-12
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++V+ + + +T+ E LK L + V+ LV NK+DL + R+V + + A
Sbjct: 102 LLVFDLTKHQTYAVVERWLKEL--YDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAEN 159
Query: 183 WGVKFVETS 191
G+ F+ETS
Sbjct: 160 NGLLFLETS 168
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 61.5 bits (150), Expect = 6e-12
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 13/109 (11%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV----ILVANKADLERRRQVTHSDG 176
D + V+S+ + +F+ + L + G + + ++ R V +
Sbjct: 74 DAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARA 133
Query: 177 KKL-AYAWGVKFVETSVGLVYKT----DELLVGIARQAGLNKKRNKLLA 220
+ L A + ET D + +A++ +K+ +LLA
Sbjct: 134 RALXADMKRCSYYETXA----TYGLNVDRVFQEVAQKVVTLRKQQQLLA 178
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 61.4 bits (150), Expect = 6e-12
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + R T+ L VI L+ NKADLE +R VT+ + K+ A
Sbjct: 92 LMVYDITRRSTYNHLSSWLTDA--RNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEE 149
Query: 183 WGVKFVETS 191
G+ F+E S
Sbjct: 150 NGLLFLEAS 158
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 61.4 bits (150), Expect = 6e-12
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
++VY V ++F + L + ++ + ILV NK D R+ V D K A
Sbjct: 85 VIVVYDVTSAESFVNVKRWLHEI--NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAGQ 142
Query: 183 WGVKFVETS 191
G++ ETS
Sbjct: 143 MGIQLFETS 151
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 61.0 bits (149), Expect = 7e-12
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + ++F +A++ +K L + VI L NKADL +R V + + A
Sbjct: 83 IVVYDITNEESFARAKNWVKEL--QRQASPNIVIALSGNKADLANKRAVDFQEAQSYADD 140
Query: 183 WGVKFVETS 191
+ F+ETS
Sbjct: 141 NSLLFMETS 149
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 62.0 bits (151), Expect = 7e-12
Identities = 18/69 (26%), Positives = 39/69 (56%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F++++ + +++F + + L + Y ++L+ NKADL +R+V ++LA
Sbjct: 111 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK 170
Query: 183 WGVKFVETS 191
+G+ + ETS
Sbjct: 171 YGIPYFETS 179
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 61.9 bits (151), Expect = 7e-12
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
+IVY V ++++F + L+ + +Y + +LV NK DL+ +R V + K+ A
Sbjct: 84 IIIVYDVTDQESFNGVKMWLQEI--DRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141
Query: 182 AWGVKFVETS 191
A + F+ETS
Sbjct: 142 ANKMPFLETS 151
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 61.1 bits (149), Expect = 9e-12
Identities = 18/69 (26%), Positives = 37/69 (53%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYA 182
F++++ + ++F + + L Y ++L NK+DLE +R V + ++LA
Sbjct: 97 FLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK 156
Query: 183 WGVKFVETS 191
+G+ + ETS
Sbjct: 157 YGIPYFETS 165
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 61.1 bits (149), Expect = 1e-11
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
F+++Y + ++F +D + Y + A +LV NK D+E R V+ G++LA
Sbjct: 84 FILMYDITNEESFNAVQDWSTQI--KTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD 141
Query: 182 AWGVKFVETS 191
G +F E S
Sbjct: 142 HLGFEFFEAS 151
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 61.1 bits (149), Expect = 1e-11
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + R+T+ L V+ L NK DL+ R+VT + + A
Sbjct: 102 LLVYDITSRETYNSLAAWLTDA--RTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQE 159
Query: 183 WGVKFVETS 191
+ F+ETS
Sbjct: 160 NELMFLETS 168
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 61.1 bits (149), Expect = 1e-11
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTHSDGKKLAY 181
V VY + +F ++ +++ + ILV NK DL QV +K A
Sbjct: 98 VFVYDMTNMASFHSLPAWIEEC--KQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD 155
Query: 182 AWGVKFVETS 191
+ ETS
Sbjct: 156 THSMPLFETS 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 61.1 bits (149), Expect = 1e-11
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + + T++ E LK L + VI LV NK+DL R V + + A
Sbjct: 82 LLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 139
Query: 183 WGVKFVETS 191
+ F+ETS
Sbjct: 140 NNLSFIETS 148
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 60.7 bits (148), Expect = 1e-11
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + + T++ E LK L + VI LV NK+DL R V + + A
Sbjct: 106 LLVYDIAKHLTYENVERWLKEL--RDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 163
Query: 183 WGVKFVETS 191
G+ F+ETS
Sbjct: 164 NGLSFIETS 172
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 61.3 bits (149), Expect = 1e-11
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
+IVY + + +++ L L + + + L+ NK+DL R V + K A
Sbjct: 90 LIVYDISKSSSYENCNHWLSEL--RENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE 147
Query: 183 WGVKFVETSV 192
+ F ETS
Sbjct: 148 NQLLFTETSA 157
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 60.7 bits (148), Expect = 1e-11
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
F+++Y + +++F +D + Y + A ILV NK DLE R V DG++LA
Sbjct: 98 FLLMYDIANQESFAAVQDWATQI--KTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLAD 155
Query: 182 AWGVKFVETS 191
G +F E S
Sbjct: 156 DLGFEFFEAS 165
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 60.7 bits (148), Expect = 2e-11
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
++VY V ++++F + L+ + +Y E +LV NK DL ++ V ++ K+ A
Sbjct: 109 IIVVYDVTDQESFNNVKQWLQEI--DRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 166
Query: 182 AWGVKFVETS 191
+ G+ F+ETS
Sbjct: 167 SLGIPFLETS 176
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 60.2 bits (147), Expect = 2e-11
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTHSDGKKLAY 181
++VY + ++F+ ED + E LV NK DLE R + +
Sbjct: 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQ 143
Query: 182 AWGVKFVETS 191
G S
Sbjct: 144 ENGFSSHFVS 153
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 60.3 bits (147), Expect = 2e-11
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
++VY + K+F + ++ + ++ +++ NK D+ +RQV+ G+KLA
Sbjct: 84 IMLVYDITNEKSFDNIRNWIRNI--EEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL 141
Query: 182 AWGVKFVETS 191
+G+KF+ETS
Sbjct: 142 DYGIKFMETS 151
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 60.7 bits (148), Expect = 2e-11
Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYA 182
++ Y + ++F+ + L+ + +Y K + +LV NK DL RR+V+ ++ + A
Sbjct: 103 ILTYDITCEESFRCLPEWLREI--EQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEA 160
Query: 183 WGVKFVETS 191
+ ++ETS
Sbjct: 161 QDMYYLETS 169
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 60.3 bits (147), Expect = 2e-11
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
+++Y V + +F + L + +Y +L+ NK D R V DG+KLA
Sbjct: 87 LLLLYDVTNKASFDNIQAWLTEI--HEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK 144
Query: 182 AWGVKFVETS 191
+G+ F+ETS
Sbjct: 145 EYGLPFMETS 154
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 59.9 bits (146), Expect = 2e-11
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++VY + R+T+ + L + VI L NK DL+ R+VT + + A
Sbjct: 87 LLVYDITSRETYNALTNWLTDA--RMLASQNIVIILCGNKKDLDADREVTFLEASRFAQE 144
Query: 183 WGVKFVETS 191
+ F+ETS
Sbjct: 145 NELMFLETS 153
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 59.6 bits (145), Expect = 4e-11
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
F+++Y + ++F +D + Y + A ILV NK D+E R V G+ LA
Sbjct: 99 FILMYDITNEESFNAVQDWATQI--KTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAE 156
Query: 182 AWGVKFVETS 191
G F E S
Sbjct: 157 QLGFDFFEAS 166
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 58.8 bits (143), Expect = 9e-11
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLE-RRRQVTHSDGKKLA 180
++V+ V ++F+ + + L ++ E+ + +LVANK DL +R QV + A
Sbjct: 101 ILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA 160
Query: 181 YAWGVKFVETS 191
+ F + S
Sbjct: 161 TTNTLDFFDVS 171
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 58.0 bits (141), Expect = 2e-10
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV--ILVANKADLERRRQVTHSDGKKLA 180
++VY V R TF K ++ L L Y + +LV NK D E R +V ++G K A
Sbjct: 91 VILVYDVTRRDTFVKLDNWLNEL--ETYCTRNDIVNMLVGNKIDKENR-EVDRNEGLKFA 147
Query: 181 YAWGVKFVETS 191
+ F+E S
Sbjct: 148 RKHSMLFIEAS 158
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 58.9 bits (142), Expect = 2e-10
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 3/73 (4%)
Query: 121 DVFVIVYSV--IERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKK 178
D F++ V + F + L++ +K +++V K D R + +
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA 223
Query: 179 LAYAWGVKFVETS 191
L+ ++ VETS
Sbjct: 224 LSK-KNLQVVETS 235
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 56.8 bits (138), Expect = 2e-10
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAY 181
++VY + + +TF + KT+ +++ ++A +LV NK+D+E R VT G+ LA
Sbjct: 79 IILVYDITDERTFTNIKQWFKTV--NEHANDEAQLLLVGNKSDMETR-VVTADQGEALAK 135
Query: 182 AWGVKFVETS 191
G+ F+E+S
Sbjct: 136 ELGIPFIESS 145
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 57.3 bits (139), Expect = 2e-10
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLAYA 182
++ Y + +R +F ++ + KY G V +L+ NK+DL R+V+ ++ + LA
Sbjct: 106 ILAYDITKRSSFLSVPHWIEDV--RKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEH 163
Query: 183 WGVK-FVETS 191
+ + +ETS
Sbjct: 164 YDILCAIETS 173
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 57.3 bits (139), Expect = 3e-10
Identities = 14/69 (20%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAYA 182
++ + V R T + +K +G +A I + ANK D++ R++++ ++
Sbjct: 89 ILFFDVTSRITCQNLARWVKEF--QAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKG 146
Query: 183 WGVKFVETS 191
++ E S
Sbjct: 147 KNYEYFEIS 155
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 57.3 bits (139), Expect = 3e-10
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADLERRRQVTHSDGKKLAY 181
++VY V + +TF + KT+ +++ ++A + LV NK+D+E R VT G+ LA
Sbjct: 96 IILVYDVTDERTFTNIKQWFKTV--NEHANDEAQLLLVGNKSDMETR-VVTADQGEALAK 152
Query: 182 AWGVKFVETS 191
G+ F+E+S
Sbjct: 153 ELGIPFIESS 162
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 57.1 bits (138), Expect = 4e-10
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
++V+ + T +A+ + L S +ILVANK D + QV + +K A
Sbjct: 121 IVVFDISNSNTLDRAKTWVNQLKISSNY---IIILVANKIDKNKF-QVDILEVQKYAQDN 176
Query: 184 GVKFVETS 191
+ F++TS
Sbjct: 177 NLLFIQTS 184
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 56.5 bits (137), Expect = 4e-10
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query: 123 FVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAV-ILVANKADLERRRQVTHSDGKKLA- 180
++VY + +++TF +K + KY E A +LV NK D E R++T G+K A
Sbjct: 102 IILVYDITKKETFDDLPKWMKMI--DKYASEDAELLLVGNKLDCETDREITRQQGEKFAQ 159
Query: 181 YAWGVKFVETS 191
G++F E S
Sbjct: 160 QITGMRFCEAS 170
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 56.1 bits (136), Expect = 8e-10
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVI-LVANKADL------ERRRQVTHSDG 176
+++Y V K+F + + + E I LV NKAD+ E ++ V G
Sbjct: 105 LLLYDVTCEKSFLNIREWVDMI--EDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFG 162
Query: 177 KKLAYAWGVKFVETS 191
+KLA +G F ETS
Sbjct: 163 EKLAMTYGALFCETS 177
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 52.3 bits (126), Expect = 2e-08
Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD--SKYIGEKAVI-LVANKADLERRRQVTHSDGK 177
D V+V+ V TFK + S E ++ NK DLE R+ T
Sbjct: 82 DCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQA 141
Query: 178 KLAYAWGVKFVETS 191
+ + ETS
Sbjct: 142 WCYSKNNIPYFETS 155
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 51.8 bits (123), Expect = 8e-08
Identities = 41/265 (15%), Positives = 79/265 (29%), Gaps = 55/265 (20%)
Query: 8 ENIVHTYHPDVFFIVYSDTNHTQRCLTSIPFCSTVENFVQTYHHVFFIVHSDTNHTQR-- 65
++I+ + F+ D Q SI S E H+ + + T R
Sbjct: 19 KDILSVFEDA--FVDNFDCKDVQDMPKSI--LSKEE-----IDHII-MSKDAVSGTLRLF 68
Query: 66 -CLTSMPFCSQVENFVQTYH-PDVFFIVYS-DTNHTQRCLTPMPFCSQVE---NFVQTYH 119
L S V+ FV+ + F++ T Q + + Q + N Q +
Sbjct: 69 WTLLSKQ-EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 120 PDVFVIVYSVIERKTFKKAEDMLKTLWDSKYI--------GEKAVILVANKADLERRRQV 171
Y+V + + K L L +K + G K + V
Sbjct: 128 K------YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-KTW-VAL---------DV 170
Query: 172 THSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMASYIN 231
S + + + ++ ++ + +L L + + + ++
Sbjct: 171 CLSYKVQCKMDFKIFWL--NLKNCNSPETVL---EMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 232 NIKQFK------WFSKVSCENLLVL 250
I + SK LLVL
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVL 250
Score = 28.3 bits (62), Expect = 2.8
Identities = 38/279 (13%), Positives = 77/279 (27%), Gaps = 98/279 (35%)
Query: 40 STVENFVQTYHHVFFIVHSDTNHTQRCLTSMPFCSQVEN--------FVQTYHPDVFFIV 91
+ +E + + + D N T R S ++ + + + +V
Sbjct: 197 TVLEMLQKLLYQI------DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LV 249
Query: 92 YSDTNHTQRCLTPMPF-C--------SQVENFVQTYHPDVFVIVYSVIERKTFKKAEDML 142
+ + + C QV +F+ + + T E +
Sbjct: 250 LLNVQNA-KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDH---HSMTLTPDE--V 303
Query: 143 KTLWDSKYIGEK--------------AVILVAN--KADLERRRQVTHSDGKKLAYAWGVK 186
K+L KY+ + + ++A + L H + KL
Sbjct: 304 KSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT-----T 357
Query: 187 FVETSV----------------------------------GLVYKTDELLVGIARQAGLN 212
+E+S+ ++ ++V N
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--------N 409
Query: 213 KKRNKLLAKKQKKMASY-INNIKQFKWFSKVSCENLLVL 250
K L +KQ K ++ I +I + KV EN L
Sbjct: 410 KLHKYSLVEKQPKESTISIPSI-YLE--LKVKLENEYAL 445
Score = 27.1 bits (59), Expect = 7.2
Identities = 21/149 (14%), Positives = 55/149 (36%), Gaps = 25/149 (16%)
Query: 117 TYHPDVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ---VTH 173
Y + V + ++ K +DM K++ + I ++ +K + +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH----IIMSKDAVSGTLRLFWTLL 72
Query: 174 SDGKKLAYAWGVKFVETSVGLVYKTDELLVGIA---RQAGLNKK-----RNKLLAKKQKK 225
S +++ KFVE + + Y L+ I RQ + + R++L Q
Sbjct: 73 SKQEEMVQ----KFVEEVLRINY--KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 226 MASYINNIKQF----KWFSKVSCENLLVL 250
++ ++ + + ++ +++
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPAKNVLI 155
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 49.1 bits (118), Expect = 1e-07
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Query: 121 DVFVIVYSVIERKTFKKAE---DMLKTLWDSKYIGEKAVILVANKADLE-RRRQVTHSDG 176
D V+VY V +F+ + D + +++ NK D E ++ V+
Sbjct: 83 DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSA 142
Query: 177 KKLAYAWG-VKFVETS 191
++LA + G + TS
Sbjct: 143 QELAKSLGDIPLFLTS 158
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 49.2 bits (118), Expect = 2e-07
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAW 183
+I++ V R T+K + + L + ++L NK D++ R+
Sbjct: 92 IIMFDVTSRVTYKNVPNWHRDL--VRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKK 147
Query: 184 GVKFVETS 191
+++ + S
Sbjct: 148 NLQYYDIS 155
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP;
1.78A {Arabidopsis thaliana}
Length = 212
Score = 48.9 bits (117), Expect = 2e-07
Identities = 24/123 (19%), Positives = 51/123 (41%), Gaps = 29/123 (23%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL--------ERRR 169
D+FV+ +S+I + ++ + + W ++ ++LV K DL +
Sbjct: 82 DIFVLAFSLISKASY----ENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTN 137
Query: 170 QVTHSDGKKLAYAWG-VKFVETSVGLVYKTDELLVGI------ARQAGLNKKRNKLLAKK 222
+T + G++L G ++E S KT + + A + L R K + ++
Sbjct: 138 VITSTQGEELRKQIGAAAYIECSS----KTQQ---NVKAVFDTAIKVVLQPPRRKEVPRR 190
Query: 223 QKK 225
+K
Sbjct: 191 RKN 193
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 47.7 bits (114), Expect = 6e-07
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL--ERRRQVTHSD 175
DV ++ ++V R +F W+ YI +LV K DL + VT +
Sbjct: 96 DVVLLCFAVNNRTSFDNISTK----WEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQE 151
Query: 176 GKKLAYAWG-VKFVETS 191
G L G V ++E S
Sbjct: 152 GDDLCQKLGCVAYIEAS 168
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 46.7 bits (112), Expect = 1e-06
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWD--SKYIGEKAV-ILVANKADLERRRQVTHSDGKKLA 180
++ +SV + ++F+ + K E +++ NK D+ RQV+ + +
Sbjct: 84 LLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWC 142
Query: 181 YAWG-VKFVETS 191
G + ETS
Sbjct: 143 RDNGDYPYFETS 154
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 47.3 bits (112), Expect = 2e-06
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLA 180
V++++ +T L+ + KY G+ VI+V NK D + +
Sbjct: 123 SVYMLLLDS---RTDSNKHYWLRHI--EKYGGKSPVIVVMNKIDENPSYNIEQKKINERF 177
Query: 181 YAWGVKFVETS 191
A +F S
Sbjct: 178 PAIENRFHRIS 188
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 41.7 bits (98), Expect = 5e-05
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 4/88 (4%)
Query: 124 VIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKAD---LERRRQVTHSDGKKLA 180
++VY V + ++F KA +K L + + + LV NK D R+V +G+KLA
Sbjct: 80 LVVYDVTKPQSFIKARHWVKEL-HEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLA 138
Query: 181 YAWGVKFVETSVGLVYKTDELLVGIARQ 208
G+ F ETS +++ +GI +
Sbjct: 139 EEKGLLFFETSAKTGENVNDVFLGIGEK 166
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 42.0 bits (99), Expect = 5e-05
Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 20/87 (22%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADLE----------- 166
D+F++ +SV+ +F+ + W + + +ILV ++DL
Sbjct: 93 DIFLLCFSVVSPSSFQNVSEK----WVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDK 148
Query: 167 -RRRQVTHSDGKKLAYAWG-VKFVETS 191
+ + V K LA ++E S
Sbjct: 149 CKEKPVPEEAAKLLAEEIKAASYIECS 175
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 40.8 bits (96), Expect = 1e-04
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 18/85 (21%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDS---KYIGEKAVILVANKADLERRRQ------- 170
DVF++ +S+I + +++ + W Y ++LV K DL +Q
Sbjct: 81 DVFILAFSLISKASYEN----VSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPG 136
Query: 171 ---VTHSDGKKLAYAWG-VKFVETS 191
+T G++L G ++E S
Sbjct: 137 AVPITTVQGEELKKLIGAPAYIECS 161
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 40.3 bits (93), Expect = 1e-04
Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%)
Query: 131 ERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLE 166
E++ KK + LK Y + A L A KA +E
Sbjct: 18 EKQALKKLQASLK-----LYADDSAPAL-AIKATME 47
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 40.4 bits (95), Expect = 2e-04
Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 11/106 (10%)
Query: 121 DVFVIVYSVIERKT-FKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQ---VTHSDG 176
+++ VY + + + + L + VILV D+ +Q
Sbjct: 81 ALYLAVYDLSKGQAEVDAMKPWLFNI--KARASSSPVILVGTHLDVSDEKQRKACMSKIT 138
Query: 177 KKLAYAWGVKFV-----ETSVGLVYKTDELLVGIARQAGLNKKRNK 217
K+L G + + +L I ++ K R++
Sbjct: 139 KELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLNFKIRDQ 184
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 39.4 bits (92), Expect = 3e-04
Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 21/115 (18%)
Query: 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL---------- 165
DV +I +S++ +F+ W + +ILV K DL
Sbjct: 76 QTDVSLICFSLVSPASFENVRAK----WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKL 131
Query: 166 --ERRRQVTHSDGKKLAYAWG-VKFVETSVGLVYKTDELLVGIARQAGLNKKRNK 217
++ +T+ G +A G VK++E S + R A L K
Sbjct: 132 KEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIR-AVLCPPPVK 185
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 38.1 bits (89), Expect = 8e-04
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 20/89 (22%)
Query: 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL---------- 165
D +I + + +T D + W ++ ++LV K+DL
Sbjct: 78 DSDAVLICFDISRPETL----DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVEL 133
Query: 166 --ERRRQVTHSDGKKLAYAWG-VKFVETS 191
R+ V++ G +A G ++E S
Sbjct: 134 SNHRQTPVSYDQGANMAKQIGAATYIECS 162
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Length = 194
Score = 38.2 bits (89), Expect = 8e-04
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 20/87 (22%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADLERRRQ------- 170
DVF+I +SV+ +F+ ++ W +Y +L+ + DL +
Sbjct: 91 DVFLICFSVVNPASFQNVKEE----WVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLND 146
Query: 171 -----VTHSDGKKLAYAWG-VKFVETS 191
+ G+KLA G +VE S
Sbjct: 147 MKEKPICVEQGQKLAKEIGACCYVECS 173
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 38.2 bits (89), Expect = 0.001
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 20/87 (22%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL------------ 165
DVF+I +S++ +F+ W + +ILV K DL
Sbjct: 103 DVFLICFSLVSPASFENVRAK----WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 158
Query: 166 ERRRQVTHSDGKKLAYAWG-VKFVETS 191
++ +T+ G +A G VK++E S
Sbjct: 159 KKLTPITYPQGLAMAKEIGAVKYLECS 185
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding, methylation,
lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo
sapiens}
Length = 214
Score = 38.2 bits (89), Expect = 0.001
Identities = 17/87 (19%), Positives = 36/87 (41%), Gaps = 20/87 (22%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADLERRRQ------- 170
V ++ + V +F + W + + + +I+V K DL + +
Sbjct: 107 SVLLLCFDVTSPNSFDNIFNR----WYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRR 162
Query: 171 -----VTHSDGKKLAYAWG-VKFVETS 191
VT+ G+++A + G V ++E S
Sbjct: 163 NGLEPVTYHRGQEMARSVGAVAYLECS 189
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 37.8 bits (88), Expect = 0.001
Identities = 24/113 (21%), Positives = 40/113 (35%), Gaps = 21/113 (18%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL------------ 165
DV ++ +SV + + + W + +ILVANK DL
Sbjct: 98 DVILMCFSVDSPDSLENIPEK----WVPEVKHFCPNVPIILVANKKDLRSDEHVRTELAR 153
Query: 166 ERRRQVTHSDGKKLAYAWG-VKFVETSVGLVYKTDELLVGIARQAGLNKKRNK 217
++ V DG+ +A ++E S E+ R A L K+
Sbjct: 154 MKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATR-AALQKRYGS 205
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 37.8 bits (88), Expect = 0.001
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 20/87 (22%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL------------ 165
D +I + + +T W ++ ++LV K+DL
Sbjct: 101 DAVLICFDISRPETLDSVLKK----WKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSN 156
Query: 166 ERRRQVTHSDGKKLAYAWG-VKFVETS 191
R+ V++ G +A G ++E S
Sbjct: 157 HRQTPVSYDQGANMAKQIGAATYIECS 183
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase,
cell adhesion, nucleotide-binding, protein engineering,
RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa}
PDB: 2wkr_A* 2wkp_A*
Length = 332
Score = 37.7 bits (87), Expect = 0.002
Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 20/89 (22%)
Query: 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL---------- 165
DVF+I +S++ +F W + +ILV K DL
Sbjct: 226 QTDVFLICFSLVSPASFHHVRAK----WYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKL 281
Query: 166 --ERRRQVTHSDGKKLAYAWG-VKFVETS 191
++ +T+ G +A G VK++E S
Sbjct: 282 KEKKLTPITYPQGLAMAKEIGAVKYLECS 310
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 37.0 bits (86), Expect = 0.002
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 20/87 (22%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL------------ 165
DV ++ +S+ + + + W + +ILV NK DL
Sbjct: 98 DVILMCFSIDSPDSLENIPEK----WTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAK 153
Query: 166 ERRRQVTHSDGKKLAYAWG-VKFVETS 191
++ V +G+ +A ++E S
Sbjct: 154 MKQEPVRSEEGRDMANRISAFGYLECS 180
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 36.0 bits (83), Expect = 0.006
Identities = 22/123 (17%), Positives = 40/123 (32%), Gaps = 24/123 (19%)
Query: 119 HPDVFVIVYSVIERKTFKKAEDMLKTLWD---SKYIGEKAVILVANKADL---------- 165
D ++ + + +T A W Y V+L+ K DL
Sbjct: 98 DSDAVLLCFDISRPETVDSALKK----WRTEILDYCPSTRVLLIGCKTDLRTDLSTLMEL 153
Query: 166 --ERRRQVTHSDGKKLAYAWG-VKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKK 222
+++ +++ G +A G ++E S K+ + A LNK
Sbjct: 154 SHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS----PLP 209
Query: 223 QKK 225
QK
Sbjct: 210 QKS 212
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP,
complex, structural G NPPSFA; HET: GDP; 2.35A
{Pyrococcus horikoshii}
Length = 357
Score = 36.0 bits (83), Expect = 0.009
Identities = 14/105 (13%), Positives = 36/105 (34%), Gaps = 14/105 (13%)
Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKLAY 181
+++ S ++ + + + + ++V NK D+ + +K
Sbjct: 251 IYIFDPSEHCGFPLEEQIHLFEEV--HGEFKDLPFLVVINKIDVADEENI--KRLEKFVK 306
Query: 182 AWGVKFVETSV----GLVYKTDELLVGIARQAGLNKKRNKLLAKK 222
G+ ++ S G+ D + I + L K+ +K
Sbjct: 307 EKGLNPIKISALKGTGI----DLVKEEIIKT--LRPLAEKVAREK 345
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle,
G-protein, prokaryote, GTP-BIND nucleotide-binding,
metal transport; 2.70A {Pyrococcus furiosus}
Length = 271
Score = 33.1 bits (76), Expect = 0.055
Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 17/128 (13%)
Query: 113 NFVQTYHPDVFVIVY--SVIERK---TFKKAEDMLKTLWDSKYIGEKAVILVANKADLER 167
NF+ + DV V + + + R T + E + K +ILV NK DL +
Sbjct: 75 NFILDGNADVIVDIVDSTCLMRNLFLTLELFE-----------MEVKNIILVLNKFDLLK 123
Query: 168 RRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMA 227
++ D KK+ GV + T+ +EL IA A N ++ + + +
Sbjct: 124 KKGA-KIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIE 182
Query: 228 SYINNIKQ 235
I +I +
Sbjct: 183 REIKHISE 190
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria,
structural genomics, structural genomics consortium,
SGC, unknown function; HET: GDP; 2.01A {Plasmodium
falciparum}
Length = 228
Score = 30.5 bits (69), Expect = 0.41
Identities = 14/112 (12%), Positives = 40/112 (35%), Gaps = 9/112 (8%)
Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADLERRRQVTHSDGKKL-- 179
+F+I S T K+ ++ ++ K++++ NK D ++ + +
Sbjct: 113 LFIIDISEQCGLTIKEQINLFYSI--KSVFSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQ 170
Query: 180 ---AYAWGVKFVETSVGLVYKTDELLVGIARQAGLNKKRNKLLAKKQKKMAS 228
+KF S ++ + L + + + Q+++ +
Sbjct: 171 ILDNVKNPIKFSSFSTLTGVGVEQAKITACEL--LKNDQAESILLDQEQLLN 220
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 30.7 bits (69), Expect = 0.43
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 138 AEDMLKTLWD--SKYIGEKAVILVANKADL 165
D + +++G V+LV NKADL
Sbjct: 79 IFDFNGSWLPGLHRFVGNNKVLLVGNKADL 108
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 30.1 bits (68), Expect = 0.45
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 122 VFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILV-ANKADL 165
VFV+ + +R+ AE + + L DS + +L+ NK D+
Sbjct: 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 127
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase,
G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima}
PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Length = 258
Score = 29.9 bits (68), Expect = 0.67
Identities = 21/85 (24%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 156 VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS----VGLVYKTDELLVGIARQAGL 211
VIL D ++ + D +L G+ V TS GL +EL I A
Sbjct: 113 VILAMTAIDEAKKTGM-KIDRYELQKHLGIPVVFTSSVTGEGL----EELKEKIVEYAQK 167
Query: 212 NKKRNKLLAKKQKKMASYINNIKQF 236
N ++++ +K+ S I ++ F
Sbjct: 168 NTILHRMILDYGEKVESEIKKVENF 192
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 29.9 bits (67), Expect = 0.81
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 149 KYIGEKAVILVANKADL 165
++ + ++LV NKADL
Sbjct: 94 RFAADNPILLVGNKADL 110
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics,
nysgxrc T18, GTPase, PSI, protein structure initiative;
HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Length = 282
Score = 28.4 bits (64), Expect = 1.9
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 149 KYIGEKAVILVANKADL 165
+ K I++ NKAD
Sbjct: 46 DILKNKPRIMLLNKADK 62
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 27.9 bits (63), Expect = 2.5
Identities = 11/69 (15%), Positives = 25/69 (36%), Gaps = 15/69 (21%)
Query: 148 SKYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKT----DELLV 203
++ + + +V NKAD+ + ++ G + S +T D L
Sbjct: 110 ARLPAKLPITVVRNKADIT-------GETLGMSEVNGHALIRLSA----RTGEGVDVLRN 158
Query: 204 GIARQAGLN 212
+ + G +
Sbjct: 159 HLKQSMGFD 167
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron
transport, GTPase, transmembrane, potassium; HET: GGM;
1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A*
3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Length = 272
Score = 28.0 bits (63), Expect = 3.0
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 156 VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS----VGLVYKTDELLVGIARQAGL 211
V + N D+ + + KL+Y GV V TS G+ D+++ A
Sbjct: 110 VTIALNMIDVLDGQGK-KINVDKLSYHLGVPVVATSALKQTGV----DQVVKKAAHTTTS 164
Query: 212 NKKRNKLL 219
Sbjct: 165 TVGDLAFP 172
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent
factor, stress response, sporulation, large G-protein,
structural genomics, PSI; HET: G4P; 2.60A {Bacillus
subtilis} SCOP: b.117.1.1 c.37.1.8
Length = 342
Score = 27.9 bits (63), Expect = 3.4
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 153 EKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSVGLVYKTDELLVGIARQ 208
E+ I+VANK D+ + + + K S ELL +A Q
Sbjct: 274 ERPQIIVANKMDMPEAAE--NLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQ 327
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 27.7 bits (62), Expect = 4.2
Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 121 DVFVIVYSVIERKTFKKAEDMLKTLWDSKYIGEKAVILVANKADL 165
+ V + +D++ + + ++V NK D+
Sbjct: 113 RADCGIL-VTDSAPTPYEDDVVNLFKEME----IPFVVVVNKIDV 152
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA,
national P protein structural and functional analyses;
HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Length = 190
Score = 27.3 bits (61), Expect = 4.4
Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 139 EDMLKTLWDSKYIGEKAVILVANKAD-LERRRQVTHSDGKKLAYAWGVKFVE 189
+ + L + I+ NK D ++ ++V + +K
Sbjct: 112 VEFYQFLRELD----IPTIVAVNKLDKIKNVQEVINFLAEKFEVPLSEIDKV 159
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 27.4 bits (62), Expect = 4.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 6/46 (13%)
Query: 121 DVFVIVYSVIERKTFKKAEDM-LKTLWDSKYIGEKAVILVANKADL 165
DV ++++ V+E + ++M L L + K VIL NK D
Sbjct: 88 DVELVIF-VVEGTRWTPDDEMVLNKLREGK----APVILAVNKVDN 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 27.5 bits (62), Expect = 4.7
Identities = 11/66 (16%), Positives = 19/66 (28%), Gaps = 11/66 (16%)
Query: 149 KYIGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV----GLVYKTDELLVG 204
+ VANK D + + +A G + + S G+ D L
Sbjct: 339 AAHPAAKFLTVANKLDRA---ANADALIRAIADGTGTEVIGISALNGDGI----DTLKQH 391
Query: 205 IARQAG 210
+
Sbjct: 392 MGDLVK 397
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 5.1
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 40/106 (37%)
Query: 127 YSVIERKTFKKAEDMLKTLWD------SKYI--GEKAV----------ILVANKADLE-- 166
YS + +T + + ++ + Y EK + + + KA E
Sbjct: 1688 YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 167 RRRQVT--------HSDGKKL-------AYAWGVKFVETSVGLVYK 197
+ + + HS L + A V +E+ V +V+
Sbjct: 1748 KSKGLIPADATFAGHS----LGEYAALASLA-DVMSIESLVEVVFY 1788
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 26.7 bits (60), Expect = 5.2
Identities = 8/12 (66%), Positives = 8/12 (66%)
Query: 153 EKAVILVANKAD 164
K VILVA K D
Sbjct: 108 GKPVILVATKVD 119
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell
membrane, ION transport, transmembrane; HET: GNP; 1.90A
{Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Length = 165
Score = 26.7 bits (60), Expect = 5.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 156 VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191
++L NK DL + + D KL GVK V S
Sbjct: 111 LLLALNKMDLAKSLGI-EIDVDKLEKILGVKVVPLS 145
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 27.1 bits (61), Expect = 5.5
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 11/64 (17%)
Query: 151 IGEKAVILVANKADLERRRQVTHSDGKKLAYAWGVKFVETSV----GLVYKTDELLVGIA 206
I K ++V NK D+ + + + K V+ S GL ++L I
Sbjct: 348 IKNKRYLVVINKVDVV---EKINEEEIKNKLGTDRHMVKISALKGEGL----EKLEESIY 400
Query: 207 RQAG 210
R+
Sbjct: 401 RETQ 404
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport, transmembrane;
HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Length = 188
Score = 26.8 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 156 VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191
++L NK DL + + D KL GVK V S
Sbjct: 115 LLLALNKMDLAKSLGI-EIDVDKLEKILGVKVVPLS 149
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO,
cell inner membrane, cell ME GTP-binding, ION transport,
membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A*
3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Length = 274
Score = 26.5 bits (59), Expect = 7.3
Identities = 5/36 (13%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 156 VILVANKADLERRRQVTHSDGKKLAYAWGVKFVETS 191
I+ N D+ ++ + + L+ G +
Sbjct: 115 CIVALNMLDIAEKQNI-RIEIDALSARLGCPVIPLV 149
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 26.7 bits (60), Expect = 8.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 151 IGEKAVILVANKADLERR 168
+ + +ILV NK DL +
Sbjct: 328 VKHRPLILVMNKIDLVEK 345
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural
genomics, structural G consortium, SGC, protein
transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z6x_A* 3aq4_A*
Length = 192
Score = 26.1 bits (58), Expect = 8.6
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 140 DMLKTLWDSKYIGEKAVILVANKADLER 167
D ++ LW + + +I V + D ER
Sbjct: 84 DKIRPLWRHYFQNTQGLIFVVDSNDRER 111
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.135 0.418
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,756,614
Number of extensions: 209481
Number of successful extensions: 869
Number of sequences better than 10.0: 1
Number of HSP's gapped: 775
Number of HSP's successfully gapped: 125
Length of query: 250
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 159
Effective length of database: 4,160,982
Effective search space: 661596138
Effective search space used: 661596138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.2 bits)