Query psy5811
Match_columns 329
No_of_seqs 264 out of 1298
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 18:36:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5811.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5811hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rhw_A Avermectin-sensitive gl 100.0 2.3E-35 7.7E-40 283.9 2.7 177 69-254 94-272 (347)
2 4aq5_A Acetylcholine receptor 100.0 5.9E-36 2E-40 298.1 -3.3 182 66-259 115-300 (461)
3 3tlw_A GLR4197 protein, GLIC; 100.0 1.1E-34 3.6E-39 276.4 4.2 174 66-254 81-255 (321)
4 2bg9_A Acetylcholine receptor 100.0 5.8E-35 2E-39 283.6 -1.0 175 66-252 91-267 (370)
5 2bg9_E Acetylcholine receptor 100.0 2.2E-35 7.4E-40 286.6 -5.5 183 65-257 89-275 (370)
6 2bg9_B Acetylcholine receptor 100.0 9.1E-35 3.1E-39 282.2 -2.0 177 66-257 91-271 (370)
7 4aq5_C Acetylcholine receptor 100.0 9.5E-35 3.2E-39 293.4 -4.4 183 66-259 114-311 (522)
8 4aq5_B Acetylcholine receptor 100.0 8.6E-35 3E-39 292.0 -4.7 181 66-259 115-306 (493)
9 2bg9_C Acetylcholine receptor 100.0 1.7E-34 6E-39 280.1 -2.5 178 65-257 92-273 (369)
10 4aq5_E Acetylcholine receptor 100.0 3.9E-35 1.3E-39 294.1 -8.4 184 66-259 90-284 (488)
11 3rqw_A ELIC pentameric ligand 100.0 1E-33 3.5E-38 269.7 -2.2 172 66-254 77-258 (322)
12 2qc1_B Acetylcholine receptor 99.9 2.3E-22 7.9E-27 180.7 13.2 119 66-188 92-212 (212)
13 3igq_A GLR4197 protein; plgic 99.9 2.6E-22 8.9E-27 179.2 10.3 110 81-191 87-197 (201)
14 4aod_A Acetylcholine-binding p 99.8 4.5E-21 1.5E-25 171.7 11.6 103 81-186 101-204 (205)
15 4aoe_A Acetylcholine-binding p 99.8 7E-21 2.4E-25 170.4 11.3 103 81-186 101-204 (205)
16 2wn9_A Soluble acetylcholine r 99.8 1E-20 3.5E-25 171.9 11.5 124 65-197 99-226 (228)
17 3sq6_A ACHBP, neuronal acetylc 99.8 1.4E-20 4.9E-25 168.2 11.9 99 85-187 104-203 (204)
18 1uw6_A Acetylcholine-binding p 99.8 6.1E-20 2.1E-24 164.7 12.4 120 65-193 87-211 (211)
19 4afh_A ACHBP; acetylcholine-bi 99.8 8.5E-20 2.9E-24 166.1 11.0 120 66-195 100-221 (230)
20 2bj0_A Acetylcholine-binding p 99.8 1.6E-19 5.4E-24 161.1 12.2 101 84-187 100-203 (203)
21 2ksr_A Neuronal acetylcholine 99.4 8.9E-16 3E-20 132.4 -9.1 75 171-253 11-85 (164)
22 2lkg_A Acetylcholine receptor; 99.3 4E-16 1.4E-20 131.2 -13.9 79 172-258 33-113 (140)
23 2lly_A Neuronal acetylcholine 99.2 7E-14 2.4E-18 117.2 -9.6 69 183-259 2-72 (137)
24 1oed_E Acetylcholine receptor 98.8 1.9E-11 6.5E-16 112.8 -11.3 65 188-259 1-67 (260)
25 1oed_A Acetylcholine receptor 98.7 1.4E-11 5E-16 111.4 -13.0 64 188-259 1-66 (227)
26 1oed_C Acetylcholine receptor 98.7 2E-11 6.8E-16 112.6 -12.6 64 188-259 1-66 (260)
27 1oed_B Acetylcholine receptor 98.7 2E-11 6.8E-16 112.0 -12.6 64 188-259 1-66 (250)
28 1vry_A Glycine receptor alpha- 89.0 0.0011 3.7E-08 49.4 -10.0 35 218-252 2-54 (76)
29 1mot_A Glycine receptor alpha- 73.3 0.082 2.8E-06 31.3 -4.2 20 218-237 2-21 (28)
30 3bbo_G Ribosomal protein L4; l 59.1 2.5 8.7E-05 39.0 0.7 12 23-34 243-254 (293)
31 3m1i_B RAN-specific GTPase-act 37.7 15 0.00051 31.7 2.1 14 61-74 71-84 (191)
32 1qy5_A Endoplasmin; GRP94, NEC 35.4 6.4 0.00022 35.8 -0.6 7 14-20 206-212 (269)
33 3aq2_A 6B protein; miRNA machi 26.4 7.8 0.00027 33.1 -1.5 14 14-27 134-147 (207)
No 1
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=2.3e-35 Score=283.92 Aligned_cols=177 Identities=29% Similarity=0.587 Sum_probs=154.4
Q ss_pred cCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCceeecc
Q psy5811 69 KSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVDIEH 148 (329)
Q Consensus 69 ~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~v~~~~ 148 (329)
|++++..+.. ..++..++|++||+|.|.+|+++++.|+||+++||||+|+|+|+|+||+|+.+++.+.|....++...+
T Consensus 94 N~~~~~~~~~-~~~n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~ 172 (347)
T 3rhw_A 94 NEKQAYKHTI-DKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKV 172 (347)
T ss_dssp TEEEEEECCS-SSCSEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEEECSSCSEEECT
T ss_pred cccccccccc-ccccEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEEecCCCceeecC
Confidence 4444443333 256778899999999999999999999999999999999999999999999999999998744555554
Q ss_pred --cccccceeeeeeEEEEeEEeeecCCceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCCCCCCeEEEEEe
Q psy5811 149 --GLELAQYALVNMTAIKNKLVTIGNDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLDVD 226 (329)
Q Consensus 149 --~~~~~eW~l~~~~~~~~~~~~~~~g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRislgiT 226 (329)
...+++|++.+.....+...+ .++.|+++.++|+++|+++||++++++||+++++++|++||+|+++.|+|+++|+|
T Consensus 173 ~~~~~~~e~~l~~~~~~~~~~~~-~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit 251 (347)
T 3rhw_A 173 GLSSSLPSFQLTNTSTTYCTSVT-NTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVT 251 (347)
T ss_dssp TSGGGCCSEEEEEEEEEECCEEC-SSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHH
T ss_pred cceeEccceEEeeEEeeEeeeee-cccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEee
Confidence 567899999999887766655 78899999999999999999999999999999999999999999987899999999
Q ss_pred eehhhhhhcccceEEEEeecCcCCCCCC
Q psy5811 227 KQIKQWCRIENNISYLVLYPSLAPYTNG 254 (329)
Q Consensus 227 ~LLs~t~~~~~~v~~l~v~~~llp~ts~ 254 (329)
+||+| +++++++++.+|.+++
T Consensus 252 ~lLt~-------tv~~~~~~~~lP~~S~ 272 (347)
T 3rhw_A 252 TLLTM-------TAQSAGINSQLPPVSY 272 (347)
T ss_dssp HHHHH-------HHHHHHHHHTSCCCSS
T ss_pred hHHHH-------HHHHHHHHhhCCCccc
Confidence 99999 4777777888887765
No 2
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=100.00 E-value=5.9e-36 Score=298.12 Aligned_cols=182 Identities=19% Similarity=0.327 Sum_probs=160.1
Q ss_pred eeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCcee
Q psy5811 66 FYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVD 145 (329)
Q Consensus 66 ~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~v~ 145 (329)
++.|++++.. +.....+++|++||+|.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++.+.|.. ..++
T Consensus 115 ~l~N~~d~~~---~~~~~~~v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~-~~~~ 190 (461)
T 4aq5_A 115 VLYNNADGDF---AIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPES-DRPD 190 (461)
T ss_dssp EESSCCCSCC---TTCSSCEEEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEEECCC-CCCS
T ss_pred eeeccccccc---ccccccceEEcCCccEEEeccccccccccccccCCCCccCccCeEEeccccCCceEEEEecc-cccc
Confidence 3445555543 22345789999999999999999999999999999999999999999999999999999986 6778
Q ss_pred ecccccccceeeeeeEEEEeEEeee-cCC-ceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCCCCCCeEEE
Q psy5811 146 IEHGLELAQYALVNMTAIKNKLVTI-GND-VHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSL 223 (329)
Q Consensus 146 ~~~~~~~~eW~l~~~~~~~~~~~~~-~~g-~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRisl 223 (329)
..++..++||++.+.........|. +.+ .|+++.++|+++|+++||++++++|++++++++|++||+|+++ ++|+++
T Consensus 191 l~~~~~~~eW~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s-~eRv~L 269 (461)
T 4aq5_A 191 LSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTL 269 (461)
T ss_dssp GGGCCTTCSSEEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGTTH
T ss_pred HHhhhccCceEEeeeeeEEEEEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccc-cceeeh
Confidence 8888899999999998887776665 456 8999999999999999999999999999999999999999998 699999
Q ss_pred EEeeehhhhhhcccceEEEEeecCcCCCCC--CCCCCc
Q psy5811 224 DVDKQIKQWCRIENNISYLVLYPSLAPYTN--GPPRGL 259 (329)
Q Consensus 224 giT~LLs~t~~~~~~v~~l~v~~~llp~ts--~~~~g~ 259 (329)
|+|+||++ +++++++++.+|.++ .|++|+
T Consensus 270 giT~LLt~-------tvfl~~v~~~LP~tS~~vplI~~ 300 (461)
T 4aq5_A 270 SISVLLSL-------TVFLLVIVELIPSTSSAVPLIGK 300 (461)
T ss_dssp HHHHHHHH-------HHHHHHHHHHHHHHHHHSCCCGG
T ss_pred hHHHHHHH-------HHHHHHHHhhcCcccCCcCHHHH
Confidence 99999999 577777788888875 577754
No 3
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=1.1e-34 Score=276.37 Aligned_cols=174 Identities=16% Similarity=0.254 Sum_probs=155.8
Q ss_pred eeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCcee
Q psy5811 66 FYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVD 145 (329)
Q Consensus 66 ~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~v~ 145 (329)
++.|++++. ..++..++|++||+|.|.+|+++++.|+||+++||||+|+|+|+|+||+|+.+++++.|.. +++.
T Consensus 81 ~l~N~~~~~-----~~~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~-~~~~ 154 (321)
T 3tlw_A 81 RFVNVENAR-----DADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDL-EKVG 154 (321)
T ss_dssp EESSBSSCC-----EEEEEEEEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEECG-GGCE
T ss_pred Eeecccccc-----cccceeEEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEcC-Cccc
Confidence 344555554 2567899999999999999999999999999999999999999999999999999999986 6777
Q ss_pred ecccccccceeeeeeEEEEeEEeee-cCCceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCCCCCCeEEEE
Q psy5811 146 IEHGLELAQYALVNMTAIKNKLVTI-GNDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLD 224 (329)
Q Consensus 146 ~~~~~~~~eW~l~~~~~~~~~~~~~-~~g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRislg 224 (329)
.+++..++||++.+.........+. +++.|+++.++|++||+++||++++++|++++++++|++|| |+++ |+|+++|
T Consensus 155 ~~~~~~~~ew~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~~-~~Rv~l~ 232 (321)
T 3tlw_A 155 KNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STSY-EANVTLV 232 (321)
T ss_dssp ECTTCCBTTEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCCH-HHHHHHH
T ss_pred ccccccccceEEEeeEeEEeeEEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCCC-CCcEEEE
Confidence 7788899999999999887666655 78899999999999999999999999999999999999999 7665 9999999
Q ss_pred EeeehhhhhhcccceEEEEeecCcCCCCCC
Q psy5811 225 VDKQIKQWCRIENNISYLVLYPSLAPYTNG 254 (329)
Q Consensus 225 iT~LLs~t~~~~~~v~~l~v~~~llp~ts~ 254 (329)
+|+||++ +++++.+++.+|.+++
T Consensus 233 it~lL~~-------t~~~~~~~~~lP~~s~ 255 (321)
T 3tlw_A 233 VSTLIAH-------IAFNILVETCLPKTPY 255 (321)
T ss_dssp HHHHHHH-------HHHHHHHCCCCCCCSS
T ss_pred hhHHHHH-------HHHHHHHHhhCCCccc
Confidence 9999999 5777778888888765
No 4
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=5.8e-35 Score=283.57 Aligned_cols=175 Identities=18% Similarity=0.318 Sum_probs=151.4
Q ss_pred eeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCcee
Q psy5811 66 FYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVD 145 (329)
Q Consensus 66 ~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~v~ 145 (329)
++.|++++.. +...+.+++|++||+|.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++++.|.. +.++
T Consensus 91 ~~~N~~~~~~---~~~~~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~-~~~~ 166 (370)
T 2bg9_A 91 VLYNNADGDF---AIVHMTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSISPES-DRPD 166 (370)
T ss_dssp EETTCCCSCE---ESCSSCEEEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEECCC-CCCS
T ss_pred eccccccccc---cccccceEEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEEecC-CCcc
Confidence 4556665442 33456899999999999999999999999999999999999999999999999999999987 6677
Q ss_pred ecccccccceeeeeeEEEEeEEeee-cC-CceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCCCCCCeEEE
Q psy5811 146 IEHGLELAQYALVNMTAIKNKLVTI-GN-DVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSL 223 (329)
Q Consensus 146 ~~~~~~~~eW~l~~~~~~~~~~~~~-~~-g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRisl 223 (329)
..++..+++|++.+.........|. +. +.|+++.++|+++|+++||++++++|++++++++|++||+|+++ |+|+++
T Consensus 167 ~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~l 245 (370)
T 2bg9_A 167 LSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS-GEKMTL 245 (370)
T ss_dssp TTSCCTTCSSEEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHH
T ss_pred cccccccceEEEEcceEEEEEEecCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC-CCeEEE
Confidence 7788899999999998887766664 22 68999999999999999999999999999999999999999998 899999
Q ss_pred EEeeehhhhhhcccceEEEEeecCcCCCC
Q psy5811 224 DVDKQIKQWCRIENNISYLVLYPSLAPYT 252 (329)
Q Consensus 224 giT~LLs~t~~~~~~v~~l~v~~~llp~t 252 (329)
|+|+||+|++ ++..+++.+|.+
T Consensus 246 git~lLt~t~-------~~~~~~~~lP~~ 267 (370)
T 2bg9_A 246 SISVLLSLTV-------FLLVIVELIPST 267 (370)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred eHHHHHHHHH-------HHHHHHhhCCCC
Confidence 9999999964 444444455554
No 5
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.98 E-value=2.2e-35 Score=286.57 Aligned_cols=183 Identities=20% Similarity=0.278 Sum_probs=155.1
Q ss_pred eeeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCce
Q psy5811 65 EFYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPV 144 (329)
Q Consensus 65 E~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~v 144 (329)
-++.|++++.. +....++++|++||+|.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++.+.|...+.+
T Consensus 89 i~~~N~~~~~~---~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~~~~ 165 (370)
T 2bg9_E 89 VVLENNVDGQF---EVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGI 165 (370)
T ss_dssp EEESSSCCSCC---BSSSSCCCEECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEECCCSCCC
T ss_pred EeeccccCCcc---cccccccEEEECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEecCCCcc
Confidence 35556666543 334456788999999999999999999999999999999999999999999999999999872267
Q ss_pred eecccccccceeeeeeEEEEeEEe-ee-cCCceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCCCCCCeEE
Q psy5811 145 DIEHGLELAQYALVNMTAIKNKLV-TI-GNDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVS 222 (329)
Q Consensus 145 ~~~~~~~~~eW~l~~~~~~~~~~~-~~-~~g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRis 222 (329)
+..++..++||++.+......... |. +++.|+++.++|+++|+++||++++++|++++++++|++||+|+++.|+|++
T Consensus 166 ~~~~~~~~~eW~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~ 245 (370)
T 2bg9_E 166 DPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCT 245 (370)
T ss_dssp GGGSCCTTSSEEEEECCCCEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHH
T ss_pred cHhhcccccEEEEecceeEEEEEecccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeE
Confidence 777788899999999887766554 44 6789999999999999999999999999999999999999999997799999
Q ss_pred EEEeeehhhhhhcccceEEEEeecCcCCCCC--CCCC
Q psy5811 223 LDVDKQIKQWCRIENNISYLVLYPSLAPYTN--GPPR 257 (329)
Q Consensus 223 lgiT~LLs~t~~~~~~v~~l~v~~~llp~ts--~~~~ 257 (329)
+|+|+||+|+ +++..+++.+|.++ .|++
T Consensus 246 lgit~lLt~t-------~~~~~~~~~lP~~S~~vp~i 275 (370)
T 2bg9_E 246 LSISVLLAQT-------IFLFLIAQKVPETSLNVPLI 275 (370)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHHSCCC
T ss_pred EeeeHHHHHH-------HHHHHHHHhCCCccCCCChH
Confidence 9999999995 55555555555554 3555
No 6
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.98 E-value=9.1e-35 Score=282.23 Aligned_cols=177 Identities=18% Similarity=0.336 Sum_probs=152.7
Q ss_pred eeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeee-cCCCce
Q psy5811 66 FYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKW-QSETPV 144 (329)
Q Consensus 66 ~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~-~~~~~v 144 (329)
++.|++++. ++.....+++|++||+|.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++.+.| .. +.+
T Consensus 91 ~~~N~~~~~---~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~~~-~~~ 166 (370)
T 2bg9_B 91 VLMNNNDGS---FEITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALD-AMI 166 (370)
T ss_dssp EESSCCCSC---EESSSSCEEEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEECSCC-CCC
T ss_pred ccccccccc---ccccccceEEEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEEeccC-Ccc
Confidence 455666554 2334457899999999999999999999999999999999999999999999999999999 54 667
Q ss_pred eecccccccceeeeeeEEEEeEEeee-cCCceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCCCCCCeEEE
Q psy5811 145 DIEHGLELAQYALVNMTAIKNKLVTI-GNDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSL 223 (329)
Q Consensus 145 ~~~~~~~~~eW~l~~~~~~~~~~~~~-~~g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRisl 223 (329)
+..++..++||++.+...... |. +++.|+++.++|+++|+++||++++++|++++++++|++||+|++ .|+|+++
T Consensus 167 ~~~~~~~~~eW~l~~~~~~~~---y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~-~~~Rv~l 242 (370)
T 2bg9_B 167 NQDAFTENGQWSIEHKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD-AGEKMSL 242 (370)
T ss_dssp STTSCCTTCSSEECCCCEEEC---CCTTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTT-CTTHHHH
T ss_pred ccccccccceEEEeccceEEe---ecCCCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCC-CCceEEE
Confidence 777888999999999887765 43 688999999999999999999999999999999999999999999 5999999
Q ss_pred EEeeehhhhhhcccceEEEEeecCcCCCCC--CCCC
Q psy5811 224 DVDKQIKQWCRIENNISYLVLYPSLAPYTN--GPPR 257 (329)
Q Consensus 224 giT~LLs~t~~~~~~v~~l~v~~~llp~ts--~~~~ 257 (329)
|+|+||+|+ +++..+++.+|.++ .|++
T Consensus 243 git~lLt~t-------~~~~~~~~~lP~~S~~vp~i 271 (370)
T 2bg9_B 243 SISALLALT-------VFLLLLADKVPETSLSVPII 271 (370)
T ss_dssp HHHHHHHHH-------HHHHHHHHHHHHHHTTSCCC
T ss_pred EehHHHHHH-------HHHHHHHhhCCCccccccHH
Confidence 999999995 55555566666654 3555
No 7
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.97 E-value=9.5e-35 Score=293.44 Aligned_cols=183 Identities=18% Similarity=0.293 Sum_probs=152.0
Q ss_pred eeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCC---
Q psy5811 66 FYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSET--- 142 (329)
Q Consensus 66 ~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~--- 142 (329)
++.|++++.. +.....++.|++||+|.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++.+.|...+
T Consensus 114 ~l~N~~d~~~---~~~~~~nv~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~l~~~~~~~~~ 190 (522)
T 4aq5_C 114 VLQNNNDGQY---NVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDG 190 (522)
T ss_dssp EETTTCSSCC---BSCSSCCEEECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCCEEC-------
T ss_pred eccccccCCc---cccccceEEEeCCccEEEEcccccccccccccCcCCCcCceEeEEEecccccCceeEEEeccCcccc
Confidence 4445555432 3344567899999999999999999999999999999999999999999999999999997521
Q ss_pred --------ceeecccccccceeeeeeEEEEeEEeee--cCCceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeec
Q psy5811 143 --------PVDIEHGLELAQYALVNMTAIKNKLVTI--GNDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWI 212 (329)
Q Consensus 143 --------~v~~~~~~~~~eW~l~~~~~~~~~~~~~--~~g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwl 212 (329)
.++..++..++||++.+.........+. .++.|+++.++|+++|+++||++++++||+++++++|++||+
T Consensus 191 ~~~~~~~~~~d~~~f~~~gEW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~L 270 (522)
T 4aq5_C 191 KDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYL 270 (522)
T ss_dssp --------CCSTTSCCTTCSEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTH
T ss_pred cCccceeeeccHHHceecceEEEeeeEEEEEeeeccccCCCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeec
Confidence 1344467789999999988766543322 345699999999999999999999999999999999999999
Q ss_pred cCCCCCCeEEEEEeeehhhhhhcccceEEEEeecCcCCCCC--CCCCCc
Q psy5811 213 DPDAVPARVSLDVDKQIKQWCRIENNISYLVLYPSLAPYTN--GPPRGL 259 (329)
Q Consensus 213 p~~s~geRislgiT~LLs~t~~~~~~v~~l~v~~~llp~ts--~~~~g~ 259 (329)
|++ .|+|+++|+|+||++ ++|++++++.+|.++ .|++|+
T Consensus 271 p~d-~~eRisLgIT~LLt~-------tvfl~~v~~~LP~tS~~vPlI~~ 311 (522)
T 4aq5_C 271 PAE-SGEKMSTAICVLLAQ-------AVFLLLTSQRLPETALAVPLIGK 311 (522)
T ss_dssp HHH-HTTCHHHHHHHHHHH-------HHHHHHHHHHHHHHTTTTTCCHH
T ss_pred CCC-cCceEEehHHHHHHH-------HHHHHHHHhcCCcccCCccHHHH
Confidence 999 499999999999999 577788888888876 477744
No 8
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.97 E-value=8.6e-35 Score=291.97 Aligned_cols=181 Identities=18% Similarity=0.312 Sum_probs=154.7
Q ss_pred eeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCC----
Q psy5811 66 FYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSE---- 141 (329)
Q Consensus 66 ~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~---- 141 (329)
++.|++++.. +.....++.|++||+|.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++.+.|...
T Consensus 115 ~l~N~~d~~~---~~~~~~nv~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~ 191 (493)
T 4aq5_B 115 VLMNNNDGSF---EITLHVNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGE 191 (493)
T ss_dssp EESSCCCSCE---ESSSSSCEEECTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEEECCCCC---
T ss_pred EEeccccccc---ccccccceEEecCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecCccccEEEEeccCCCCc
Confidence 3445555442 334456799999999999999999999999999999999999999999999999999999531
Q ss_pred -----CceeecccccccceeeeeeEEEEeEEeeecCCceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCCC
Q psy5811 142 -----TPVDIEHGLELAQYALVNMTAIKNKLVTIGNDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDA 216 (329)
Q Consensus 142 -----~~v~~~~~~~~~eW~l~~~~~~~~~~~~~~~g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s 216 (329)
..++..++..++||++.+.........+ ++.|+++.++|+++|+++||++++++||+++++++|++||+|+++
T Consensus 192 ~~~~~~~~~l~~f~~~~eW~l~~~~~~~~~~~~--~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s 269 (493)
T 4aq5_B 192 REVKEIMINQDAFTENGQWSIEHKPSRKNWRSD--DPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA 269 (493)
T ss_dssp ------CCSGGGCCTTCSSBCCCCCCEECCCTT--SSSBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTC
T ss_pred cceecccccHHHhccccceeeeeeeEEEEeecC--CCCccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCC
Confidence 2345556778999999998877665444 348999999999999999999999999999999999999999997
Q ss_pred CCCeEEEEEeeehhhhhhcccceEEEEeecCcCCCCCC--CCCCc
Q psy5811 217 VPARVSLDVDKQIKQWCRIENNISYLVLYPSLAPYTNG--PPRGL 259 (329)
Q Consensus 217 ~geRislgiT~LLs~t~~~~~~v~~l~v~~~llp~ts~--~~~g~ 259 (329)
|+|+++|+|+||++ +++++++++.+|.+++ |++|+
T Consensus 270 -~eRvsLgiT~LLt~-------tvfl~~v~~~LP~tS~~vPlI~~ 306 (493)
T 4aq5_B 270 -GEKMSLSISALLAL-------TVFLLLLADKVPETSLSVPIIIS 306 (493)
T ss_dssp -GGGGTHHHHHHHHH-------HHHHHHHHHHTTTTTTSSCCCCH
T ss_pred -CceEEehHHHHHHH-------HHHHHHHHhcCCccccCCCchHh
Confidence 99999999999999 5788888889998864 77754
No 9
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.97 E-value=1.7e-34 Score=280.13 Aligned_cols=178 Identities=17% Similarity=0.283 Sum_probs=150.4
Q ss_pred eeeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCce
Q psy5811 65 EFYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPV 144 (329)
Q Consensus 65 E~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~v 144 (329)
-++.|++++.. +....++++|++||+|.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++.+.|. +
T Consensus 92 i~~~N~~~~~~---~~~~~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~~----~ 164 (369)
T 2bg9_C 92 IVLQNNNDGQY---NVAYFCNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEISMDLI----I 164 (369)
T ss_dssp EEETTTCSSCC---BSSSSCCEEECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCEEECC----C
T ss_pred Eeccccccccc---cccccccEEEECCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCceEEEEEe----c
Confidence 34556665542 3344567999999999999999999999999999999999999999999999999999992 3
Q ss_pred eecccccccceeeeeeEEEEeEEe-ee-cCCceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCCCCCCeEE
Q psy5811 145 DIEHGLELAQYALVNMTAIKNKLV-TI-GNDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVS 222 (329)
Q Consensus 145 ~~~~~~~~~eW~l~~~~~~~~~~~-~~-~~g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRis 222 (329)
+..++..++||++.+......... |. +++.|+++.++|+++|+++||++++++|++++++++|++||+|+++ |+|++
T Consensus 165 ~~~~~~~~~ew~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~-~~Rv~ 243 (369)
T 2bg9_C 165 DPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAES-GEKMS 243 (369)
T ss_dssp GGGSCCTTSSEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHH
T ss_pred ccccceeCCEEEEeeeeEEEEEEecCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCCC-CCeEE
Confidence 455677889999999988877655 54 6789999999999999999999999999999999999999999995 99999
Q ss_pred EEEeeehhhhhhcccceEEEEeecCcCCCCC--CCCC
Q psy5811 223 LDVDKQIKQWCRIENNISYLVLYPSLAPYTN--GPPR 257 (329)
Q Consensus 223 lgiT~LLs~t~~~~~~v~~l~v~~~llp~ts--~~~~ 257 (329)
+|+|+||+|+ +++..+++.+|.++ .|++
T Consensus 244 lgit~lLt~t-------~~~~~~~~~lP~~S~~vp~i 273 (369)
T 2bg9_C 244 TAICVLLAQA-------VFLLLTSQRLPETALAVPLI 273 (369)
T ss_dssp HHHHHHHHHH-------HHHHHHHHHHHHHHHTSCCC
T ss_pred EEhHHHHHHH-------HHHHHHHHhCCCCccCccHH
Confidence 9999999996 44445555555553 3444
No 10
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.97 E-value=3.9e-35 Score=294.12 Aligned_cols=184 Identities=20% Similarity=0.301 Sum_probs=153.5
Q ss_pred eeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCc--
Q psy5811 66 FYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETP-- 143 (329)
Q Consensus 66 ~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~-- 143 (329)
++.|++++.. +.....++.|++||+|.|.+|++++++|+||+++||||+|+|+|+|+||+|+.+++.+.|...+.
T Consensus 90 ~l~N~~d~~~---~~~~~~nv~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~ 166 (488)
T 4aq5_E 90 VLENNVDGQF---EVAYYANVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQLSAEEGEV 166 (488)
T ss_dssp ECSSSCCSCC---BSCSSSCCCBCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEECCCSCC--
T ss_pred ehhccccccc---cccccccEEEeCCceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEEeccCCCcc
Confidence 4445555432 33345678899999999999999999999999999999999999999999999999999976221
Q ss_pred -----eeecccccccceeeeeeEEEEeEEeee--cCCceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCCC
Q psy5811 144 -----VDIEHGLELAQYALVNMTAIKNKLVTI--GNDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDA 216 (329)
Q Consensus 144 -----v~~~~~~~~~eW~l~~~~~~~~~~~~~--~~g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s 216 (329)
++..++..++||++.+.........+. .++.|+++.++|+++|+++||++++++||+++++++|++||+|+++
T Consensus 167 ~~~~~~d~~~~~~~~eW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a 246 (488)
T 4aq5_E 167 VEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQA 246 (488)
T ss_dssp -----CGGGSCCTTCSEEEEECCCEEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eeeeeccHHHccccceEEEEeeEEEEEEeeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccc
Confidence 344567789999999987765543222 3456999999999999999999999999999999999999999996
Q ss_pred CCCeEEEEEeeehhhhhhcccceEEEEeecCcCCCCC--CCCCCc
Q psy5811 217 VPARVSLDVDKQIKQWCRIENNISYLVLYPSLAPYTN--GPPRGL 259 (329)
Q Consensus 217 ~geRislgiT~LLs~t~~~~~~v~~l~v~~~llp~ts--~~~~g~ 259 (329)
.|+|++||+|+||++ +++++++++.+|.++ .|++|+
T Consensus 247 ~~eRvsLgIt~LLt~-------tvfl~~v~~~LP~tS~~vPlI~~ 284 (488)
T 4aq5_E 247 GGQKCTLSISVLLAQ-------TIFLFLIAQKVPETSLNVPLIGK 284 (488)
T ss_dssp CSTHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHSCCCHH
T ss_pred cCceEEEehHHHHHH-------HHHHHHHHhhCCccccCccHHHH
Confidence 799999999999999 477777778888775 577743
No 11
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.97 E-value=1e-33 Score=269.67 Aligned_cols=172 Identities=15% Similarity=0.294 Sum_probs=147.1
Q ss_pred eeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCc--
Q psy5811 66 FYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETP-- 143 (329)
Q Consensus 66 ~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~-- 143 (329)
++.|++++.. .++..++|++||+|.|.+|+++++.|+||+++||||+|+|+|+|+||+|+.+++++.|.. ..
T Consensus 77 ~l~N~~~~~~-----~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~-~~~~ 150 (322)
T 3rqw_A 77 EFINVVGSPD-----TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQ-VYTE 150 (322)
T ss_dssp EETTBSSCCE-----EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEE-CCSC
T ss_pred EEEcccCccc-----ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECC-Cccc
Confidence 4445555543 467899999999999999999999999999999999999999999999999999999975 22
Q ss_pred eeecccccccceee-eeeEEE------EeEEeee-cCCceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCC
Q psy5811 144 VDIEHGLELAQYAL-VNMTAI------KNKLVTI-GNDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPD 215 (329)
Q Consensus 144 v~~~~~~~~~eW~l-~~~~~~------~~~~~~~-~~g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~ 215 (329)
...+ . .++||++ .+.... .....+. +++.|+++.++|++||+++||++++++|++++++++|++||+| +
T Consensus 151 ~~~~-~-~~~ew~l~~~~~~~~~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~ 227 (322)
T 3rqw_A 151 NIDN-E-EIDEWWIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-S 227 (322)
T ss_dssp SSSS-C-SSSSEEECCSCEECCEEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-S
T ss_pred ccCC-C-CCCceEEEeeeEEEeeccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-C
Confidence 2222 2 7899999 988876 3333343 4789999999999999999999999999999999999999999 5
Q ss_pred CCCCeEEEEEeeehhhhhhcccceEEEEeecCcCCCCCC
Q psy5811 216 AVPARVSLDVDKQIKQWCRIENNISYLVLYPSLAPYTNG 254 (329)
Q Consensus 216 s~geRislgiT~LLs~t~~~~~~v~~l~v~~~llp~ts~ 254 (329)
+ |+|+++|+|+||++ ++++..+++.+|.+++
T Consensus 228 ~-~~Rv~l~it~lL~~-------~~~~~~~~~~lP~~s~ 258 (322)
T 3rqw_A 228 F-SERLQTSFTLMLTV-------VAYAFYTSNILPRLPY 258 (322)
T ss_dssp H-HHHHHHHHHHHHHH-------HHHHHHHHHHSCCCSS
T ss_pred C-CCcEEEEEehHHHH-------HHHHHHHhhhCCCccc
Confidence 5 99999999999999 5777777888887764
No 12
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=99.88 E-value=2.3e-22 Score=180.70 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=103.9
Q ss_pred eeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCcee
Q psy5811 66 FYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVD 145 (329)
Q Consensus 66 ~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~v~ 145 (329)
++.|++++..+. .....++|++||+|.|.+|++++++|+||+++||||+|+|+|.|+||+|+..++.+.|.. ..+.
T Consensus 92 ~~~N~~~~~~~~---~~~~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~-~~~~ 167 (212)
T 2qc1_B 92 VLYNNADGDFAI---VKFTKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAINPES-DQPD 167 (212)
T ss_dssp EECCBTTTSSCE---ECCCCEEEETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTTEEEEESC-SSCB
T ss_pred eccccccccccc---cceeeEEEECCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCceEEEEecc-cccc
Confidence 455665554322 234789999999999999999999999999999999999999999999999999999987 6778
Q ss_pred ecccccccceeeeeeEEEEeEEeee-cC-CceeeEEEEEEEEecc
Q psy5811 146 IEHGLELAQYALVNMTAIKNKLVTI-GN-DVHSIIQINFQLKRNT 188 (329)
Q Consensus 146 ~~~~~~~~eW~l~~~~~~~~~~~~~-~~-g~ys~l~~~~~LkR~~ 188 (329)
..++..++||++.+.........|. +. +.|+.+.++|+|+|+|
T Consensus 168 ~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~~y~~i~~~~~l~R~p 212 (212)
T 2qc1_B 168 LSNFMESGEWVIKEARGWKHWVFYSCCPTTPYLDITYHFVMQRLP 212 (212)
T ss_dssp CTTCCCCSSEEEEEEEEEEEEEEETTCSSCCEEEEEEEEEEEECC
T ss_pred hhhCccCCCEEEEEeEEEEEEEecCCCCCCCeeEEEEEEEEEECc
Confidence 8888999999999999988877775 34 8899999999999986
No 13
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.87 E-value=2.6e-22 Score=179.20 Aligned_cols=110 Identities=12% Similarity=0.110 Sum_probs=88.6
Q ss_pred CCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCceeecccccccceeeeee
Q psy5811 81 SPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVDIEHGLELAQYALVNM 160 (329)
Q Consensus 81 ~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~v~~~~~~~~~eW~l~~~ 160 (329)
.++..++|++||+|.|.+|++++++|+||+++||||+|+|+|.|+||+|+.+++.|.|.. ..+..+++..++||++.+.
T Consensus 87 ~~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~-~~~~~~~~~~~~ew~l~~~ 165 (201)
T 3igq_A 87 ADVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDL-EKVGKNDDVFLTGWDIESF 165 (201)
T ss_dssp EEEEEEEECTTCEEEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCCEEEEECG-GGCEESCSEEETTEEEEEE
T ss_pred ccceEEEEeCCCcEEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceEEEEEecC-CccccccCcccCCeEEEee
Confidence 457899999999999999999999999999999999999999999999999999999987 7788888999999999999
Q ss_pred EEEEeEEeee-cCCceeeEEEEEEEEecccee
Q psy5811 161 TAIKNKLVTI-GNDVHSIIQINFQLKRNTGFF 191 (329)
Q Consensus 161 ~~~~~~~~~~-~~g~ys~l~~~~~LkR~~~~y 191 (329)
........|. +...|+.+.|+|.|||+.+.+
T Consensus 166 ~~~~~~~~y~cc~~~y~~i~f~i~irR~~~~~ 197 (201)
T 3igq_A 166 TAVVKPANFALEDRLESKLDYQLRISRQGGHH 197 (201)
T ss_dssp EEEEEC--------CCCEEEEEEEEEEC----
T ss_pred EEEEEEEEeCCCCCccCeEEEEEEEEECCCCC
Confidence 9999887776 677999999999999998765
No 14
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.84 E-value=4.5e-21 Score=171.69 Aligned_cols=103 Identities=15% Similarity=0.199 Sum_probs=95.8
Q ss_pred CCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCceeecccccccceeeeee
Q psy5811 81 SPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVDIEHGLELAQYALVNM 160 (329)
Q Consensus 81 ~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~v~~~~~~~~~eW~l~~~ 160 (329)
..+..++|++||+|.|.+|+.++++|+||+.+|||| |+|+|+||||+|++.++.+.|.. .++.+++..++||++.+.
T Consensus 101 ~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fgSw~y~~~~i~l~~~~--~~dl~~~~~n~EW~l~~~ 177 (205)
T 4aod_A 101 FSDKLARVSQDGTVTYVPQLKVRLSCPLADLKLETG-VTCSLKSGSWTHSTQELTLEVNA--KVDLGDYASDTRFQLLNA 177 (205)
T ss_dssp CSCCEEEEETTSEEEECCEEEEEEECCCTTSSSSSC-EEEEEEEEESSCCTTTEEEECSS--SCBCTTSCTTCSSEEEEE
T ss_pred ecceEEEEecCCEEEEeccEEEEEEecCccccCCCC-cEEEEEEECccccccEEEEEECC--CcccccccccCCEEEEee
Confidence 567889999999999999999999999999999999 99999999999999999999864 577788999999999999
Q ss_pred EEEEeEEeee-cCCceeeEEEEEEEEe
Q psy5811 161 TAIKNKLVTI-GNDVHSIIQINFQLKR 186 (329)
Q Consensus 161 ~~~~~~~~~~-~~g~ys~l~~~~~LkR 186 (329)
.+.+....|. |.+.|+.+.|+|+|||
T Consensus 178 ~~~~~~~~Y~cc~~~Y~~it~~~~lrR 204 (205)
T 4aod_A 178 TQQVNRKQYPCCPETYEDTTLSFTFRK 204 (205)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeCCCCCCcceEEEEEEEEC
Confidence 9999988887 6789999999999977
No 15
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.84 E-value=7e-21 Score=170.44 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=95.5
Q ss_pred CCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCceeecccccccceeeeee
Q psy5811 81 SPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVDIEHGLELAQYALVNM 160 (329)
Q Consensus 81 ~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~v~~~~~~~~~eW~l~~~ 160 (329)
..++.++|++||+|.|.+|++++++|+|| .+||||+|+|+|+||||+|++.++.+.+. +.++.+++..++||++.+.
T Consensus 101 ~~~~~v~v~~~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~l~l~~~--~~~dl~~~~~n~EW~l~~~ 177 (205)
T 4aoe_A 101 HSDQLVRVYKDGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDLVLDES--QQVDLTTYAGGERFQLIEA 177 (205)
T ss_dssp CSCCEEEEETTSEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSCCTTTEEEECS--SSCBCTTSCTTCSEEEEEE
T ss_pred ccceEEEEeCCcEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECccCChheEEEecC--cccchhccccCCcEEEEee
Confidence 45788999999999999999999999999 89999999999999999999999999765 4677888999999999999
Q ss_pred EEEEeEEeee-cCCceeeEEEEEEEEe
Q psy5811 161 TAIKNKLVTI-GNDVHSIIQINFQLKR 186 (329)
Q Consensus 161 ~~~~~~~~~~-~~g~ys~l~~~~~LkR 186 (329)
++.+....|. |.++|+.+.|+|+|||
T Consensus 178 ~~~r~~~~Y~CC~~~y~dit~~i~lrR 204 (205)
T 4aoe_A 178 KQKVNKKTYPCCPQSFEDIELRVTFKK 204 (205)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCCCcceEEEEEEEEE
Confidence 9999988887 6789999999999999
No 16
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.83 E-value=1e-20 Score=171.90 Aligned_cols=124 Identities=12% Similarity=0.135 Sum_probs=101.1
Q ss_pred eeeecCccccccccccCCCceEEEeeCCeEEEEeccccccccc---cccCCCCcceeeEeeeeecccccccceEeeecCC
Q psy5811 65 EFYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCK---MFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSE 141 (329)
Q Consensus 65 E~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~---mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~ 141 (329)
-++.|++++.. +.. +..++|++||+|.|.+|++++++|+ ||++ |+|+|+|+|+||+|+..++.+.|..
T Consensus 99 i~l~N~~~~~~---~~~-~~~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw~y~~~~i~l~~~~- 169 (228)
T 2wn9_A 99 ITAYSSTRPVQ---VLS-PQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEIDLKTDT- 169 (228)
T ss_dssp EEESSBSSCCE---ECS-CCEEEEETEEEEEECCEEEEEEECCCTTTTST----TCEEEEEEEEESSCCTTTEEEECSC-
T ss_pred eeccccccccc---ccc-cceEEEeCCeEEEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEeecccccEEEEEecC-
Confidence 35556665542 323 8999999999999999999999999 9999 9999999999999999999999987
Q ss_pred CceeecccccccceeeeeeEEEEeEEeee-cCCceeeEEEEEEEEeccceeeEeecc
Q psy5811 142 TPVDIEHGLELAQYALVNMTAIKNKLVTI-GNDVHSIIQINFQLKRNTGFFVLQTYV 197 (329)
Q Consensus 142 ~~v~~~~~~~~~eW~l~~~~~~~~~~~~~-~~g~ys~l~~~~~LkR~~~~yi~~iil 197 (329)
..+....+..++||++.+.........|. +.+.|+.+.++|+|+|+++||++++++
T Consensus 170 ~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil 226 (228)
T 2wn9_A 170 DQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL 226 (228)
T ss_dssp SBCBCTTCCTTCSEEEEEEEEEEEEECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred CccchhhceecCCEEEEEEEEEEEEEeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence 66777788899999999999888877775 578999999999999999999999875
No 17
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=99.83 E-value=1.4e-20 Score=168.21 Aligned_cols=99 Identities=14% Similarity=0.188 Sum_probs=92.0
Q ss_pred eEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecCCCceeecccccccceeeeeeEEEE
Q psy5811 85 SILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVDIEHGLELAQYALVNMTAIK 164 (329)
Q Consensus 85 ~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~v~~~~~~~~~eW~l~~~~~~~ 164 (329)
.++|++||+|.|.+|++++++|+||+ +||||+|+|+|.|+||+|+..++.+.|.. ++.+++..++||++.+.....
T Consensus 104 ~v~v~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~v~l~~~~---~~~~~~~~~~eW~l~~~~~~~ 179 (204)
T 3sq6_A 104 LALVNSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTHHSRELDLQMQE---ADISGYIPYSRFELVGVTQKR 179 (204)
T ss_dssp EEEEETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSCCTTTEEEECCC---CCCTTSCSSSSEEEEEEEEEE
T ss_pred EEEEEeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecccCeEEEEEecc---CCHHHcccCCCEEEEEeEEEE
Confidence 89999999999999999999999999 99999999999999999999999999753 556678899999999999998
Q ss_pred eEEeee-cCCceeeEEEEEEEEec
Q psy5811 165 NKLVTI-GNDVHSIIQINFQLKRN 187 (329)
Q Consensus 165 ~~~~~~-~~g~ys~l~~~~~LkR~ 187 (329)
....|. +.+.|+.+.|+|+|||+
T Consensus 180 ~~~~y~~c~~~y~~i~~~~~lrRr 203 (204)
T 3sq6_A 180 SERFYECCKEPYPDVTFTVTFRKK 203 (204)
T ss_dssp EEEECSSSSSEEEEEEEEEEEEEC
T ss_pred EEEeeCCCCCCcceEEEEEEEEEC
Confidence 887775 57899999999999997
No 18
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.82 E-value=6.1e-20 Score=164.75 Aligned_cols=120 Identities=11% Similarity=0.170 Sum_probs=103.3
Q ss_pred eeeecCccccccccccCCCceEEEeeCCeEEEEeccccccccc---cccCCCCcceeeEeeeeecccccccceEeeecCC
Q psy5811 65 EFYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCK---MFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSE 141 (329)
Q Consensus 65 E~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~---mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~ 141 (329)
-++.|++++. ... .+ ..++|++||+|.|.+|++++++|+ ||++ |+|+|+|.|+||+|+..++.+.|..
T Consensus 87 i~~~N~~~~~--~~~-~~-~~~~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~~y~~~~i~l~~~~- 157 (211)
T 1uw6_A 87 LAAYNAISKP--EVL-TP-QLARVVSDGEVLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSWTHHSREISVDPTT- 157 (211)
T ss_dssp EEETTBCSCC--EEC-SC-CEEEEETTSEEEECCEEEEEEECCCTTTTSS----SCEEEEEEEEESSCCTTTEEEEECC-
T ss_pred Eeeecccccc--ccc-ee-eEEEEeCCceEEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcccccCceEEEEecc-
Confidence 4556666665 222 33 899999999999999999999999 9999 9999999999999999999999987
Q ss_pred Cceeeccccc-ccceeeeeeEEEEeEEeee-cCCceeeEEEEEEEEeccceeeE
Q psy5811 142 TPVDIEHGLE-LAQYALVNMTAIKNKLVTI-GNDVHSIIQINFQLKRNTGFFVL 193 (329)
Q Consensus 142 ~~v~~~~~~~-~~eW~l~~~~~~~~~~~~~-~~g~ys~l~~~~~LkR~~~~yi~ 193 (329)
..++..++.. ++||++.+.........|. +.+.|+.+.++|+|+|+++||++
T Consensus 158 ~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~yyil 211 (211)
T 1uw6_A 158 ENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211 (211)
T ss_dssp CSSCTTTTSCTTSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEECCCC---
T ss_pred cccchhhhcccCCCEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEEccceeEC
Confidence 6777778888 9999999999888777775 58899999999999999999985
No 19
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.81 E-value=8.5e-20 Score=166.12 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=95.7
Q ss_pred eeecCccccccccccCCCceEEEeeCCeEEEEeccccccccccccCCCCcceeeEeeeeecccccccceEeeecC-CCce
Q psy5811 66 FYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQS-ETPV 144 (329)
Q Consensus 66 ~~t~s~~s~~~~~~~~~~~~v~V~~dG~V~~~~r~~~~~~C~mdl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~-~~~v 144 (329)
++.|++++... .....+++|++||+|.|.+|++++++|+| |||+|+|+|.|+||+|+..++.+.|.. ...+
T Consensus 100 ~l~N~~~~~~~---~~~~~~v~v~~~G~V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~ 171 (230)
T 4afh_A 100 KLFNSVDLDMT---LDRTTQAIVFSNGTVLWIPPAVLKVLCVS-----QDDVDSCHFQFGSWVYSVDEVDIHFMDDKAEV 171 (230)
T ss_dssp EETTCSSSSCE---ECTTSCEEEETTSEEEECCEEEEEEEEEE-----ETTEEEEEEEEEESSCCTTTEEEEEGGGCCSC
T ss_pred EEEeccccccc---ccccceEEEEcCCEEEEecCEEEEEECCC-----CCCcccCCEeeccccccCceEEEEECCCCccc
Confidence 44455555432 23457899999999999999999999999 999999999999999999999999976 2346
Q ss_pred eecccccccceeeeeeEEEEeEEeee-cCCceeeEEEEEEEEeccceeeEee
Q psy5811 145 DIEHGLELAQYALVNMTAIKNKLVTI-GNDVHSIIQINFQLKRNTGFFVLQT 195 (329)
Q Consensus 145 ~~~~~~~~~eW~l~~~~~~~~~~~~~-~~g~ys~l~~~~~LkR~~~~yi~~i 195 (329)
+. ++..++ |++.+.........|. +.+.|+.+.|+|.|||+++||++.-
T Consensus 172 d~-~~~~n~-W~l~~~~~~~~~~~y~cc~~~y~~i~f~~~irRrpl~~~~~~ 221 (230)
T 4afh_A 172 LL-DFYQDS-LEILENSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYSR 221 (230)
T ss_dssp BC-TTCCCC-CCEEEEEEEEEEECCTTCSSCEEEEEEEEEEECC--------
T ss_pred ce-eeecCc-EEEEEEEEEEEEEecCCCCCCccEEEEEEEEEEeechhhccc
Confidence 66 788889 9999999998877775 5789999999999999999998753
No 20
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=99.80 E-value=1.6e-19 Score=161.14 Aligned_cols=101 Identities=15% Similarity=0.244 Sum_probs=94.5
Q ss_pred ceEEEeeCCeEEEEecccccccccc-ccCCCCcceeeEeeeeecccccccceEeeecCCCc-eeecccccccceeeeeeE
Q psy5811 84 ASILLINMALTLFCFRLTLTATCKM-FLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETP-VDIEHGLELAQYALVNMT 161 (329)
Q Consensus 84 ~~v~V~~dG~V~~~~r~~~~~~C~m-dl~~FPFD~Q~C~L~f~S~~y~~~ev~l~~~~~~~-v~~~~~~~~~eW~l~~~~ 161 (329)
..++|++||+|.|.+|++++++|+| |+++ ||+|+|+|.|+||+|+.+++.+.|.. +. +...++..++||++.+..
T Consensus 100 ~~v~i~~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~~y~~~~v~l~~~~-~~~~~~~~~~~~~ew~l~~~~ 176 (203)
T 2bj0_A 100 DRVVVSKDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSWTHDNKQFALITGE-EGVVNIAEYFDSPKFDLLSAT 176 (203)
T ss_dssp CEEEEETTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEEEESSCCTTTEEEEECT-TTTSCTTTTCCCSSEEEEEEE
T ss_pred eEEEEeCCcEEEEecceEEEEEccccccCc--cccceeeEEEEcccccCcEEEEEecC-CCccchhcceecCCEEEEEeE
Confidence 8999999999999999999999999 9998 99999999999999999999999986 44 777888999999999999
Q ss_pred EEEeEEeee-cCCceeeEEEEEEEEec
Q psy5811 162 AIKNKLVTI-GNDVHSIIQINFQLKRN 187 (329)
Q Consensus 162 ~~~~~~~~~-~~g~ys~l~~~~~LkR~ 187 (329)
.......|. +.+.|+++.++|+|+|+
T Consensus 177 ~~~~~~~y~~~~~~y~~l~~~~~l~R~ 203 (203)
T 2bj0_A 177 QSLNRKKYSCCENMYDDIEITFAFRKK 203 (203)
T ss_dssp EEEEEEECTTCSSEEEEEEEEEEEEEC
T ss_pred EEEEEEecCCCCCCeeEEEEEEEEEEC
Confidence 988887776 58899999999999996
No 21
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.40 E-value=8.9e-16 Score=132.41 Aligned_cols=75 Identities=16% Similarity=0.358 Sum_probs=57.0
Q ss_pred cCCceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCCCCCCeEEEEEeeehhhhhhcccceEEEEeecCcCC
Q psy5811 171 GNDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLDVDKQIKQWCRIENNISYLVLYPSLAP 250 (329)
Q Consensus 171 ~~g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRislgiT~LLs~t~~~~~~v~~l~v~~~llp 250 (329)
+++.|+++.+++.+||+++||++++++||+++++++|++||+|+++ |+|+++|+|++|++ ++++.++++.+|
T Consensus 11 ~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~-------tvfl~~v~~~lP 82 (164)
T 2ksr_A 11 VDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLAL-------TVFLLLISKIVP 82 (164)
T ss_dssp --------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHH-------HHHHHHHHTTCC
T ss_pred CCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHH-------HHHHHHHHHHCC
Confidence 7788999999999999999999999999999999999999999998 99999999999999 577777788888
Q ss_pred CCC
Q psy5811 251 YTN 253 (329)
Q Consensus 251 ~ts 253 (329)
.++
T Consensus 83 ~tS 85 (164)
T 2ksr_A 83 PTS 85 (164)
T ss_dssp SSC
T ss_pred CCc
Confidence 775
No 22
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.35 E-value=4e-16 Score=131.24 Aligned_cols=79 Identities=15% Similarity=0.128 Sum_probs=70.9
Q ss_pred CCceeeEEEEEEEEeccceeeEeecchhHHHHhhhheeeeccCCCCCCeEEEEEeeehhhhhhcccceEEEEeecCcCCC
Q psy5811 172 NDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLDVDKQIKQWCRIENNISYLVLYPSLAPY 251 (329)
Q Consensus 172 ~g~ys~l~~~~~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRislgiT~LLs~t~~~~~~v~~l~v~~~llp~ 251 (329)
+|.|+++.+.|.+||+++||++++++|++++++++|++||+|+++ |+|+++|+|++|++ ++++..+++.+|.
T Consensus 33 ~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~-------tvfl~~v~~~lP~ 104 (140)
T 2lkg_A 33 AGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSL-------TEKLKKIVELIPS 104 (140)
T ss_dssp HHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHH-------HHHHHGGGGTCTT
T ss_pred CCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHH-------HHHHHHHHHhCCC
Confidence 456799999999999999999999999999999999999999997 99999999999999 5788888888888
Q ss_pred CC--CCCCC
Q psy5811 252 TN--GPPRG 258 (329)
Q Consensus 252 ts--~~~~g 258 (329)
++ .|++|
T Consensus 105 tS~~vPlI~ 113 (140)
T 2lkg_A 105 TSSAVPLIG 113 (140)
T ss_dssp TGGGHHHHH
T ss_pred ccccccHHH
Confidence 75 35444
No 23
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.17 E-value=7e-14 Score=117.24 Aligned_cols=69 Identities=19% Similarity=0.488 Sum_probs=60.9
Q ss_pred EEEeccceeeEeecchhHHHHhhhheeeeccCCCCCCeEEEEEeeehhhhhhcccceEEEEeecCcCCCCC--CCCCCc
Q psy5811 183 QLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLDVDKQIKQWCRIENNISYLVLYPSLAPYTN--GPPRGL 259 (329)
Q Consensus 183 ~LkR~~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRislgiT~LLs~t~~~~~~v~~l~v~~~llp~ts--~~~~g~ 259 (329)
++||+++||++++++||+++++++|++||+|+++ |+|+++|+|++|++ ++++..+++.+|.++ .|++|.
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s-~eRv~lgit~lLs~-------tv~l~~~~~~lP~tS~~vpli~~ 72 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSEC-GEKITLCISVLLSL-------TVFLLLITEIIPSTSSVSPSIGE 72 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCST-THHHHHHHHHHHHH-------HHHHHHHHHHCSCCSSSCCSTHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCC-CCeEEEEeeeHHHH-------HHHHHHHHHhCCCCcccchHHHH
Confidence 5799999999999999999999999999999998 99999999999999 577788888888876 476643
No 24
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=98.75 E-value=1.9e-11 Score=112.79 Aligned_cols=65 Identities=20% Similarity=0.393 Sum_probs=57.7
Q ss_pred cceeeEeecchhHHHHhhhheeeeccCCCCCCeEEEEEeeehhhhhhcccceEEEEeecCcCCCCC--CCCCCc
Q psy5811 188 TGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLDVDKQIKQWCRIENNISYLVLYPSLAPYTN--GPPRGL 259 (329)
Q Consensus 188 ~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRislgiT~LLs~t~~~~~~v~~l~v~~~llp~ts--~~~~g~ 259 (329)
++||++++++||+++++++|++||+|+++.|+|+++|+|+||++ ++|++++++.+|.++ .|++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~-------tvfl~~~~~~lP~tS~~vPli~~ 67 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQ-------TIFLFLIAQKVPETSLNVPLIGK 67 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHSCCCCS
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHH-------HHHHHHHHHhCCCCcccchhHHH
Confidence 57999999999999999999999999995599999999999999 577788888888775 677754
No 25
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=98.72 E-value=1.4e-11 Score=111.41 Aligned_cols=64 Identities=22% Similarity=0.458 Sum_probs=57.4
Q ss_pred cceeeEeecchhHHHHhhhheeeeccCCCCCCeEEEEEeeehhhhhhcccceEEEEeecCcCCCCC--CCCCCc
Q psy5811 188 TGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLDVDKQIKQWCRIENNISYLVLYPSLAPYTN--GPPRGL 259 (329)
Q Consensus 188 ~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRislgiT~LLs~t~~~~~~v~~l~v~~~llp~ts--~~~~g~ 259 (329)
|+||++++++||+++++++|++||+|+++ |+|+++|+|++|++ ++|+.++++.+|.++ .|++|+
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~s-gerv~l~it~lLs~-------tvfl~~v~~~lP~tS~~vPli~~ 66 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSL-------TVFLLVIVELIPSTSSAVPLIGK 66 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHSCCCTH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCC-CCeEeehHHHHHHH-------HHHHHHHHHhCCCcccccchHHH
Confidence 57999999999999999999999999999 99999999999999 577788888888875 677754
No 26
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=98.71 E-value=2e-11 Score=112.65 Aligned_cols=64 Identities=22% Similarity=0.411 Sum_probs=58.3
Q ss_pred cceeeEeecchhHHHHhhhheeeeccCCCCCCeEEEEEeeehhhhhhcccceEEEEeecCcCCCCC--CCCCCc
Q psy5811 188 TGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLDVDKQIKQWCRIENNISYLVLYPSLAPYTN--GPPRGL 259 (329)
Q Consensus 188 ~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRislgiT~LLs~t~~~~~~v~~l~v~~~llp~ts--~~~~g~ 259 (329)
++||++++++||+++++++|++||+|+++ |+|+++|+|+||++ ++|++++++.+|.++ .|++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~-gekv~l~it~lLs~-------tvfl~~~~~~lP~tS~~vPli~~ 66 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQ-------AVFLLLTSQRLPETALAVPLIGK 66 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHSCCCTH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCC-CCeEeehHHHHHHH-------HHHHHHHHHHCCCCcccchhHHH
Confidence 57999999999999999999999999997 99999999999999 588888888888875 688865
No 27
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=98.71 E-value=2e-11 Score=112.05 Aligned_cols=64 Identities=25% Similarity=0.461 Sum_probs=57.3
Q ss_pred cceeeEeecchhHHHHhhhheeeeccCCCCCCeEEEEEeeehhhhhhcccceEEEEeecCcCCCCC--CCCCCc
Q psy5811 188 TGFFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLDVDKQIKQWCRIENNISYLVLYPSLAPYTN--GPPRGL 259 (329)
Q Consensus 188 ~~~yi~~iilP~~llvlLs~lsFwlp~~s~geRislgiT~LLs~t~~~~~~v~~l~v~~~llp~ts--~~~~g~ 259 (329)
++||++++++||+++++++|++||+|+++ |+|+++|+|+||++ ++|++++++.+|.++ .|++|+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~ds-gerv~l~it~lLs~-------tvfl~~v~~~lP~tS~~vPli~~ 66 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAV-------TVFLLLLADKVPETSLSVPIIIR 66 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHSCCCCT
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCC-CCeEEehhhHHHHH-------HHHHHHHHHHCCCCcccCCcHHH
Confidence 57999999999999999999999999999 99999999999999 577788888888775 677754
No 28
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=89.05 E-value=0.0011 Score=49.40 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=30.8
Q ss_pred CCeEEEEEeeehhhhhhcccc------------------eEEEEeecCcCCCC
Q psy5811 218 PARVSLDVDKQIKQWCRIENN------------------ISYLVLYPSLAPYT 252 (329)
Q Consensus 218 geRislgiT~LLs~t~~~~~~------------------v~~l~v~~~llp~t 252 (329)
++|++||+|++|+|+++..+. +|++|+|+++++++
T Consensus 2 paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya 54 (76)
T 1vry_A 2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYA 54 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999987541 58999999999998
No 29
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=73.28 E-value=0.082 Score=31.33 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=16.7
Q ss_pred CCeEEEEEeeehhhhhhccc
Q psy5811 218 PARVSLDVDKQIKQWCRIEN 237 (329)
Q Consensus 218 geRislgiT~LLs~t~~~~~ 237 (329)
++|+++|++++|+++++..+
T Consensus 2 paRv~LGittvLt~tt~~~~ 21 (28)
T 1mot_A 2 PARVGLGITTVLTMTTQSSG 21 (28)
T ss_dssp CHHHHHHHHHHHHHCCSSSS
T ss_pred CceEEEcchhHHHHHHHHhh
Confidence 68999999999999866543
No 30
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=59.14 E-value=2.5 Score=38.96 Aligned_cols=12 Identities=8% Similarity=0.343 Sum_probs=5.0
Q ss_pred eeeeechHHHHh
Q psy5811 23 HRVVVDDKRVKK 34 (329)
Q Consensus 23 ~~~~~~~~~~~~ 34 (329)
..++.....-++
T Consensus 243 ~~lViT~~Al~~ 254 (293)
T 3bbo_G 243 EKLVFTEGTIQY 254 (293)
T ss_dssp SCEECCTTHHHH
T ss_pred CcEEEEHHHHHH
Confidence 344444444333
No 31
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=37.73 E-value=15 Score=31.66 Aligned_cols=14 Identities=36% Similarity=0.520 Sum_probs=6.8
Q ss_pred hhhceeeecCcccc
Q psy5811 61 EQEEEFYTKSPKCL 74 (329)
Q Consensus 61 ~~~~E~~t~s~~s~ 74 (329)
|+|+..|..+.+-.
T Consensus 71 EdEe~lf~~RaKLf 84 (191)
T 3m1i_B 71 EDEEVLYKVRAKLF 84 (191)
T ss_dssp TTEEEEEEEEEEEE
T ss_pred cceeeeeEEeeEEE
Confidence 34455555554433
No 32
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A*
Probab=35.43 E-value=6.4 Score=35.77 Aligned_cols=7 Identities=0% Similarity=0.088 Sum_probs=3.2
Q ss_pred eeEEecc
Q psy5811 14 VVSISSS 20 (329)
Q Consensus 14 ~~~~~~~ 20 (329)
.|++|+.
T Consensus 206 fi~~PI~ 212 (269)
T 1qy5_A 206 FINFPIY 212 (269)
T ss_dssp TCSSCEE
T ss_pred ccceeeE
Confidence 3445543
No 33
>3aq2_A 6B protein; miRNA machineries, toxin, ADP-ribosylation fold; 1.65A {Agrobacterium vitis} PDB: 3aq3_A
Probab=26.39 E-value=7.8 Score=33.13 Aligned_cols=14 Identities=21% Similarity=0.086 Sum_probs=9.2
Q ss_pred eeEEecccceeeee
Q psy5811 14 VVSISSSQCHRVVV 27 (329)
Q Consensus 14 ~~~~~~~~~~~~~~ 27 (329)
.+||..|||-.-..
T Consensus 134 FlAim~SncF~r~G 147 (207)
T 3aq2_A 134 FLAILMSQLFIRIR 147 (207)
T ss_dssp EEEECCBTTEEEEE
T ss_pred eeEeccccceeecc
Confidence 57888888755433
Done!