RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5811
(329 letters)
>gnl|CDD|233155 TIGR00860, LIC, Cation transporter family protein. The
Ligand-gated Ion Channel (LIC) Family of
Neurotransmitter Receptors TC 1.A.9)Members of the LIC
family of ionotropic neurotransmitter receptors are
found only in vertebrate and invertebrate animals. They
exhibit receptor specificity for (1)acetylcholine, (2)
serotonin, (3) glycine, (4) glutamate and (5)
g-aminobutyric acid (GABA). All of these receptor
channels are probably hetero- orhomopentameric. The best
characterized are the nicotinic acetyl-choline receptors
which are pentameric channels of a2bgd subunit
composition. All subunits arehomologous. The three
dimensional structures of the protein complex in both
the open and closed configurations have been solved at
0.9 nm resolution.The channel protein complexes of the
LIC family preferentially transport cations or anions
depending on the channel (e.g., the acetylcholine
receptors are cationselective while glycine receptors
are anion selective) [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 459
Score = 129 bits (327), Expect = 4e-34
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 99 RLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVDIEHGL--ELAQYA 156
R+TLT C M LR FPFD Q C L S+GYT+ND+K +W+ + V ++ L L ++
Sbjct: 149 RITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLEWKEQGAVQVDDSLFISLPEFE 208
Query: 157 LVNMTAIKNKLVTIGNDVHSIIQINFQLKRNTGFFVLQTYVPCSLMVCSSWVSFWIDPDA 216
L+ + + + + +F L+R +++LQ Y+P L+V SWVSFW+ DA
Sbjct: 209 LLGVYGTRYCTSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADA 268
Query: 217 VPARVSLDV 225
ARVSL +
Sbjct: 269 SGARVSLGI 277
>gnl|CDD|217293 pfam02931, Neur_chan_LBD, Neurotransmitter-gated ion-channel ligand
binding domain. This family is the extracellular ligand
binding domain of these ion channels. This domain forms
a pentameric arrangement in the known structure.
Length = 215
Score = 81.5 bits (202), Expect = 3e-18
Identities = 22/98 (22%), Positives = 42/98 (42%), Gaps = 7/98 (7%)
Query: 98 FRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVDIEHGLELAQYAL 157
++C M L FPFD Q C L GS+ Y +V +W+ +TP ++ ++L+ +
Sbjct: 118 PPAIYKSSCPMDLTYFPFDQQNCSLKFGSWTYNGEEVDLRWKDDTPPILDEEIDLSDFTE 177
Query: 158 VNMTAIKNKLVTIG-------NDVHSIIQINFQLKRNT 188
I + ++++ + F L+R
Sbjct: 178 NGEWDIVDVPAKRNEYPYGCYSELYPDVTFYFVLRRKP 215
>gnl|CDD|202474 pfam02932, Neur_chan_memb, Neurotransmitter-gated ion-channel
transmembrane region. This family includes the four
transmembrane helices that form the ion channel.
Length = 228
Score = 55.4 bits (134), Expect = 5e-09
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 195 TYVPCSLMVCSSWVSFWIDPDAVPARVSL 223
+PC L+ SW+ FW+ DA P +V+L
Sbjct: 1 LIIPCVLISFLSWLVFWLPADAGPEKVTL 29
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 55.0 bits (132), Expect = 3e-08
Identities = 23/28 (82%), Positives = 27/28 (96%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+EEEEE+EEEE+EEEEEEEEEEEE+E E
Sbjct: 864 EEEEEEEEEEEEEEEEEEEEEEEEEENE 891
Score = 55.0 bits (132), Expect = 3e-08
Identities = 23/27 (85%), Positives = 26/27 (96%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEEE+EEEE+EEEEEEEEEEEE+ EE
Sbjct: 866 EEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 53.5 bits (128), Expect = 8e-08
Identities = 22/27 (81%), Positives = 26/27 (96%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EEE+EEEE+EEEEEEEEEEEE+EEE
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEE 888
Score = 53.5 bits (128), Expect = 8e-08
Identities = 23/27 (85%), Positives = 26/27 (96%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+EEEEE+EEEE+EEEEEEEEEEEE EE
Sbjct: 866 EEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 53.5 bits (128), Expect = 9e-08
Identities = 24/36 (66%), Positives = 29/36 (80%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
+ EE+EEEE+EEEEEEEEEEEE+EEE + P LE
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLE 897
Score = 41.9 bits (98), Expect = 4e-04
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K + + + EE+EEEEEEEEEEEE+EEE
Sbjct: 850 KGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEE 882
Score = 31.5 bits (71), Expect = 0.69
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
+EEEEE+EEEE EE E E Q++ Y
Sbjct: 879 EEEEEEEEEEENEEPLSLEWPETRQKQAIY 908
Score = 30.7 bits (69), Expect = 1.2
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K E+ + + EEEEEEEE+EEE
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEE 875
Score = 29.6 bits (66), Expect = 2.8
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + + E E E E+E E E EE EE E E E
Sbjct: 709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGE 746
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 49.7 bits (119), Expect = 1e-06
Identities = 17/35 (48%), Positives = 27/35 (77%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R + ++++EE+E+E++EEEEEEEE EE + EE
Sbjct: 338 RCTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 44.7 bits (106), Expect = 4e-05
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYT 68
V + EEEE+++EEE+EEEEE EE E E+ T
Sbjct: 342 VNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLLT 378
Score = 36.2 bits (84), Expect = 0.021
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 45 EEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCS 81
E++++EEE+E+EEEEEE+EE + + L+ S
Sbjct: 345 EQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLLTPIS 381
Score = 35.8 bits (83), Expect = 0.029
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 21 QCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
R + K + ++E+EE+EEEE+E EE E EE
Sbjct: 335 PQGRCTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPP 375
Score = 33.1 bits (76), Expect = 0.20
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EEEE+EEEE+E E +E EE E
Sbjct: 285 YQLEEEEEEEEEEEPAERDELEENPDFEG 313
Score = 32.0 bits (73), Expect = 0.46
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E EEE+EEEE E +EE+E EEE+EEE
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEE 195
Score = 31.6 bits (72), Expect = 0.57
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
E EE+EEEE+ E +EE+E EE+EEE + PK
Sbjct: 168 REGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPK 201
Score = 31.6 bits (72), Expect = 0.63
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EEEE+EEE E +EE+E EEEE+EE
Sbjct: 169 EGEEEEEEEEVGEADEEDEGEEEEEEEP 196
Score = 30.0 bits (68), Expect = 1.8
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEEEF 66
E+EEEE+EEEE E +E E+ +F
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDF 311
Score = 29.6 bits (67), Expect = 2.3
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEEE+EEEE E +E EE + + E
Sbjct: 289 EEEEEEEEEEPAERDELEENPDFEGLE 315
Score = 29.6 bits (67), Expect = 2.8
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
E E + EEE+EEEE E +EE++ EE + P
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEP 196
Score = 28.5 bits (64), Expect = 4.9
Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 9/45 (20%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE---------FYTKSP 71
+ +E E EE+E EEEEEEE EE +EEE F SP
Sbjct: 175 EEEEVGEADEEDEGEEEEEEEPEEVPKEEEGTGVNKYVYFVCTSP 219
Score = 28.5 bits (64), Expect = 5.1
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPR 83
E E E E+EEEEEE E +E++E + + E+ +
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEEGT 206
Score = 28.5 bits (64), Expect = 5.5
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+EEEEE+ E EE+E EEEEEEE EE
Sbjct: 172 EEEEEEEVGEADEEDEGEEEEEEEPEE 198
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 41.6 bits (98), Expect = 5e-05
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEE 61
EE+EEEE+EEEEEEEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 7e-05
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEE 60
EEE+EEEE+EEEEEEE EEE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.4 bits (95), Expect = 1e-04
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE+EEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.4 bits (95), Expect = 1e-04
Identities = 16/23 (69%), Positives = 18/23 (78%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEE 61
E+EEEE+EEEEEEEEE EE
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEE 94
Score = 39.6 bits (93), Expect = 3e-04
Identities = 16/25 (64%), Positives = 19/25 (76%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQE 63
+EEEE+EEEEEEEEEE E+E
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 38.9 bits (91), Expect = 4e-04
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEE 64
EEEE+EEEEEEEEEEE +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 30.0 bits (68), Expect = 0.51
Identities = 12/18 (66%), Positives = 16/18 (88%)
Query: 36 KMKEEEEEKEEEEQEEEE 53
+ +EEEEE+EEEE+ EEE
Sbjct: 78 EEEEEEEEEEEEEESEEE 95
Score = 28.5 bits (64), Expect = 1.8
Identities = 12/21 (57%), Positives = 17/21 (80%)
Query: 32 VKKIKMKEEEEEKEEEEQEEE 52
++ + +EEEEE+EEEE EEE
Sbjct: 75 AEEEEEEEEEEEEEEEESEEE 95
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 43.2 bits (102), Expect = 6e-05
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
K+KE E E +EE E++EEEEEEEEE++E+F
Sbjct: 159 KLKELEAEDVDEEDEKDEEEEEEEEEEDEDFD 190
Score = 41.7 bits (98), Expect = 2e-04
Identities = 13/29 (44%), Positives = 25/29 (86%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EE+E+ EEEE+EEEEE+E+ +++ +++
Sbjct: 168 VDEEDEKDEEEEEEEEEEDEDFDDDDDDD 196
Score = 41.3 bits (97), Expect = 3e-04
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
K +++ E+ ++E+E+ EEEEEEEEEE+E ++
Sbjct: 159 KLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDD 192
Score = 40.5 bits (95), Expect = 4e-04
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
KK+K E E+ EE+E++EEEEEEEEEE+++ +
Sbjct: 158 KKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDD 192
Score = 39.4 bits (92), Expect = 0.001
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K+ M E++ ++ E E +EE+E++EEEE+EEE
Sbjct: 150 DEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEE 183
Score = 39.0 bits (91), Expect = 0.002
Identities = 15/36 (41%), Positives = 31/36 (86%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K++K+++ ++ +EE E++E+EEEEEEEE+E+ +++
Sbjct: 158 KKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDD 193
Score = 38.6 bits (90), Expect = 0.002
Identities = 16/40 (40%), Positives = 30/40 (75%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
D+++ ++ K +E E E+ ++E+E++EEEEEEE+EE+
Sbjct: 149 IDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDED 188
Score = 38.2 bits (89), Expect = 0.002
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K + +EE++++EE+EEEEEEE+E+ + +++
Sbjct: 158 KKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDD 194
Score = 38.2 bits (89), Expect = 0.003
Identities = 11/28 (39%), Positives = 26/28 (92%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E+E+++EEEE+EEEE+E+ ++++ +++
Sbjct: 170 EEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 37.8 bits (88), Expect = 0.004
Identities = 16/38 (42%), Positives = 28/38 (73%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+D K ++++ +E E E+ +EE+E++EEEEE+EEE
Sbjct: 147 EDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEE 184
Score = 37.0 bits (86), Expect = 0.006
Identities = 11/35 (31%), Positives = 27/35 (77%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
+ + V + K+EEEE+EEEE++E+ ++++++++
Sbjct: 164 EAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 33.6 bits (77), Expect = 0.10
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+V + + + I K EK+ +E E E+ +EE+E+++EEE
Sbjct: 138 KVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEE 179
Score = 33.2 bits (76), Expect = 0.12
Identities = 11/35 (31%), Positives = 27/35 (77%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
+ K +EEEEE+EEE+++ ++++++++++ E Y
Sbjct: 171 EDEKDEEEEEEEEEEDEDFDDDDDDDDDDYNAENY 205
Score = 30.5 bits (69), Expect = 1.0
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 8/41 (19%)
Query: 33 KKIKMKEEEEEK--------EEEEQEEEEEEEEEEEEQEEE 65
+K+ + EEEE E++ +E E E+ +EE+E++EE
Sbjct: 137 RKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEE 177
Score = 27.8 bits (62), Expect = 6.2
Identities = 9/30 (30%), Positives = 23/30 (76%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEE 56
VD++ K + +EEEEE++E+ +++++++
Sbjct: 168 VDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 27.4 bits (61), Expect = 8.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 14 VVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V+ I+ ++ + + K EEEE+ +E+ E++ +E E E +E
Sbjct: 119 VMGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDE 170
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 41.1 bits (97), Expect = 7e-05
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 41.1 bits (97), Expect = 7e-05
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEE 61
E+++EE+EEEEE+EE EEE
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 39.9 bits (94), Expect = 2e-04
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEE 59
EE+KEEEE+EEE+EE EEE
Sbjct: 75 AAAEEKKEEEEEEEEKEESEEE 96
Score = 39.2 bits (92), Expect = 3e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
EE++EEEEEEEE+EE +EE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 38.4 bits (90), Expect = 7e-04
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E++E+EEEEEE+EE EE+
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 38.0 bits (89), Expect = 8e-04
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEE 61
EE+++EEEE+EE+EE EEE
Sbjct: 76 AAEEKKEEEEEEEEKEESEEEAAA 99
Score = 29.9 bits (68), Expect = 0.59
Identities = 12/20 (60%), Positives = 15/20 (75%)
Query: 36 KMKEEEEEKEEEEQEEEEEE 55
K +EEEEE+E+EE EEE
Sbjct: 80 KKEEEEEEEEKEESEEEAAA 99
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 41.5 bits (98), Expect = 1e-04
Identities = 12/31 (38%), Positives = 26/31 (83%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +E+E + +EE++EEE++EE+++E++ EE
Sbjct: 107 VASEEDESDDDEEDEEEEDDEEDDDEDESEE 137
Score = 40.0 bits (94), Expect = 4e-04
Identities = 13/27 (48%), Positives = 24/27 (88%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E ++ EE+E+EE++EE+++E+E EEE
Sbjct: 112 DESDDDEEDEEEEDDEEDDDEDESEEE 138
Score = 39.2 bits (92), Expect = 5e-04
Identities = 14/34 (41%), Positives = 27/34 (79%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
E ++++E+EE+E++EE+++E+E +EEE K K
Sbjct: 113 ESDDDEEDEEEEDDEEDDDEDESEEEESPVKKVK 146
Score = 39.2 bits (92), Expect = 6e-04
Identities = 13/36 (36%), Positives = 28/36 (77%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+ EE+E +++E++EEEE++EE+++++E +SP
Sbjct: 107 VASEEDESDDDEEDEEEEDDEEDDDEDESEEEESPV 142
Score = 38.5 bits (90), Expect = 0.001
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
EE+E ++EE EEEE++EE+++E E E K
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEESPVK 143
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 42.0 bits (99), Expect = 1e-04
Identities = 17/43 (39%), Positives = 31/43 (72%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R +++KR + K +EE EE+ E+++EEEE +E EE+ ++E+
Sbjct: 30 ERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQ 72
Score = 35.8 bits (83), Expect = 0.013
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 10/73 (13%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEE----------EEEEEQEEEFYTKSPKCLELM 77
++ ++ K KEEEE KE EEQ +E+EE EEE + +S + LE
Sbjct: 46 EELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADEESNELLEDF 105
Query: 78 LQCSPRASILLIN 90
+ ++ +
Sbjct: 106 INYIKLKKVVNLE 118
Score = 35.1 bits (81), Expect = 0.027
Identities = 15/43 (34%), Positives = 31/43 (72%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R +++R ++ K++E+ E + +EE+E EEE E+++EE+E +
Sbjct: 20 QREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERK 62
Score = 30.8 bits (70), Expect = 0.68
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+R ++ +EE EE+++ E++ E E +EEEE +EE
Sbjct: 17 RRQQREAEEEEREERKKLEEKREGERKEEEELEEER 52
Score = 30.1 bits (68), Expect = 1.2
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 8/45 (17%)
Query: 30 KRVKKIKMKE--------EEEEKEEEEQEEEEEEEEEEEEQEEEF 66
K+ K++ K+ EEEE+EE ++ EE+ E E +EE+E E
Sbjct: 6 KKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEE 50
Score = 29.7 bits (67), Expect = 1.6
Identities = 12/35 (34%), Positives = 24/35 (68%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ K++E++ +++ E EEEE EE ++ E++ E
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKRE 39
Score = 28.5 bits (64), Expect = 3.4
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
K++ K + EE++ +Q E EEEE EE ++ EE K E
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEE 46
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell
cycle progression and biogenesis of 60S ribosomal
subunits. The Schistosoma mansoni Mak16 has been shown
to target protein transport to the nucleolus.
Length = 97
Score = 39.5 bits (92), Expect = 2e-04
Identities = 19/50 (38%), Positives = 26/50 (52%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLEL 76
+ KK EE EE +EEE+EEEEEE+E E E + + +L
Sbjct: 46 ISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDL 95
Score = 32.2 bits (73), Expect = 0.076
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ + ++ +EEEEE+EE+E E E ++EE E+E E
Sbjct: 54 ALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIE 93
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 39.7 bits (93), Expect = 2e-04
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E +E EEEE+EEE EEE +++
Sbjct: 75 AGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.2 bits (89), Expect = 7e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E E ++ EEEE+EEE EE+ ++
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 37.0 bits (86), Expect = 0.002
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E E EEEE+EEE E+E +
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESD 100
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is
functionally equivalent to L7/L12 in bacteria and the
P1 and P2 proteins in eukaryotes. L12p is homologous to
P1 and P2 but is not homologous to bacterial L7/L12. It
is located in the L12 stalk, with proteins L10, L11,
and 23S rRNA. L12p is the only protein in the ribosome
to occur as multimers, always appearing as sets of
dimers. Recent data indicate that most archaeal species
contain six copies of L12p (three homodimers), while
eukaryotes have four copies (two heterodimers), and
bacteria may have four or six copies (two or three
homodimers), depending on the species. The organization
of proteins within the stalk has been characterized
primarily in bacteria, where L7/L12 forms either two or
three homodimers and each homodimer binds to the
extended C-terminal helix of L10. L7/L12 is attached to
the ribosome through L10 and is the only ribosomal
protein that does not directly interact with rRNA.
Archaeal L12p is believed to function in a similar
fashion. However, hybrid ribosomes containing the large
subunit from E. coli with an archaeal stalk are able to
bind archaeal and eukaryotic elongation factors but not
bacterial elongation factors. In several mesophilic and
thermophilic archaeal species, the binding of 23S rRNA
to protein L11 and to the L10/L12p pentameric complex
was found to be temperature-dependent and cooperative.
Length = 106
Score = 39.4 bits (92), Expect = 3e-04
Identities = 15/26 (57%), Positives = 22/26 (84%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
EEK EE++EE+++EEE+EEE+EE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 38.6 bits (90), Expect = 5e-04
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E++ EE+EEE+++EEE+EE+EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 38.6 bits (90), Expect = 6e-04
Identities = 16/23 (69%), Positives = 22/23 (95%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEE 60
+E+ EEKEEE+++EEE+EEEEEE
Sbjct: 75 EEKAEEKEEEKKKEEEKEEEEEE 97
Score = 38.2 bits (89), Expect = 7e-04
Identities = 15/24 (62%), Positives = 22/24 (91%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEE 61
EE+ E++EEE+++EEE+EEEEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 37.1 bits (86), Expect = 0.002
Identities = 13/25 (52%), Positives = 22/25 (88%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQ 62
EE+ +E+EE++++EEE+EEEEE+
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 34.8 bits (80), Expect = 0.011
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEE 55
++ ++EEE+K+EEE+EEEEEE
Sbjct: 75 EEKAEEKEEEKKKEEEKEEEEEE 97
Score = 34.8 bits (80), Expect = 0.011
Identities = 13/23 (56%), Positives = 21/23 (91%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEE 58
+ K EE+E+E++++EE+EEEEEE
Sbjct: 75 EEKAEEKEEEKKKEEEKEEEEEE 97
Score = 34.8 bits (80), Expect = 0.012
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEE 56
+ K +E+EEEK++EE++EEEEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 26.3 bits (58), Expect = 9.8
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQE 50
+K +K + K++EEEKEEEE+E
Sbjct: 76 EKAEEKEEEKKKEEEKEEEEEE 97
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 39.2 bits (91), Expect = 3e-04
Identities = 18/27 (66%), Positives = 23/27 (85%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEEE +E+++EEE E EEEE E+EEE
Sbjct: 52 EEEEEVDEDDEEEEGEGEEEEGEEEEE 78
Score = 38.8 bits (90), Expect = 5e-04
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
M+EEEE E++E+EE E EEEE EE+EE
Sbjct: 51 MEEEEEVDEDDEEEEGEGEEEEGEEEEET 79
Score = 37.6 bits (87), Expect = 0.001
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE +E +EEE+ E EEEE EEEE+ E
Sbjct: 55 EEVDEDDEEEEGEGEEEEGEEEEETEG 81
Score = 36.9 bits (85), Expect = 0.002
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE ++++EE+E E EEEE EEE+E E
Sbjct: 54 EEEVDEDDEEEEGEGEEEEGEEEEETE 80
Score = 36.5 bits (84), Expect = 0.003
Identities = 18/28 (64%), Positives = 21/28 (75%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E EEE+E +E +EEEE E EEEE EEE
Sbjct: 49 DEMEEEEEVDEDDEEEEGEGEEEEGEEE 76
Score = 35.7 bits (82), Expect = 0.005
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEE-------EEQEEEFYTKSPK 72
+EEEE E EE+E EEEEE E E++E++ TK K
Sbjct: 60 DDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKKQK 101
Score = 34.2 bits (78), Expect = 0.018
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++E E+EEE E++EEEE E EE+E E
Sbjct: 48 DDEMEEEEEVDEDDEEEEGEGEEEEGE 74
Score = 33.8 bits (77), Expect = 0.025
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
D +++ + +E++E+EE E EEEE EEEEE E
Sbjct: 48 DDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETE 80
Score = 33.0 bits (75), Expect = 0.044
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
E++EE+E E +EEE EEEEE E
Sbjct: 59 EDDEEEEGEGEEEEGEEEEETEGATG 84
Score = 32.6 bits (74), Expect = 0.070
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E ++E EEEE+ +E++EEEE E +EEE
Sbjct: 46 EGDDEMEEEEEVDEDDEEEEGEGEEEE 72
Score = 31.9 bits (72), Expect = 0.13
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E + E EE+EE +E++EEEE + EE
Sbjct: 44 AQEGDDEMEEEEEVDEDDEEEEGEGEE 70
Score = 31.9 bits (72), Expect = 0.14
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E +++ EEE+E +E++EEEE E EEE
Sbjct: 45 QEGDDEMEEEEEVDEDDEEEEGEGEEE 71
Score = 31.5 bits (71), Expect = 0.16
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E EE +E +E EEEEE +E+ EEE
Sbjct: 37 NENEENGAQEGDDEMEEEEEVDEDDEEE 64
Score = 28.4 bits (63), Expect = 2.1
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
VV++K K E +E QE ++E EEEEE E++
Sbjct: 22 VVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDD 61
Score = 27.6 bits (61), Expect = 3.5
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
EE +E +++ EEEEE +E++E+EE
Sbjct: 40 EENGAQEGDDEMEEEEEVDEDDEEEE 65
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 42.1 bits (99), Expect = 3e-04
Identities = 21/50 (42%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEE-EEQEEEEEEEEEEEEQEEEFYTKSPK 72
+ V+ + K++ +EEEEEKEE +E+EE+ ++EEE ++EEE K K
Sbjct: 24 YLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKK 73
Score = 31.7 bits (72), Expect = 0.58
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 43 EKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
EKE E++ +EEEEEE+EE++EE + K E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEE 60
Score = 30.1 bits (68), Expect = 1.7
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
I + E+E ++E EEEEEE+EE++E+EE+
Sbjct: 23 IYLWVEKEVEKEVPDEEEEEEKEEKKEEEEK 53
Score = 29.7 bits (67), Expect = 2.5
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R+ K+ + +E+E+ EEE EE E E E E++ E
Sbjct: 487 RMIKLGLSIDEDEEVEEEDEEAEVETTEPAEEDAE 521
Score = 29.0 bits (65), Expect = 4.0
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ + E+EE +EE+E+ E E E EE+ E+
Sbjct: 493 LSIDEDEEVEEEDEEAEVETTEPAEEDAED 522
Score = 29.0 bits (65), Expect = 4.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E+EE EEE++E E E E EE E+
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAED 522
Score = 28.2 bits (63), Expect = 7.7
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E EEE EE E E E EE+ E+ + E
Sbjct: 500 EVEEEDEEAEVETTEPAEEDAEDSKME 526
Score = 27.8 bits (62), Expect = 9.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EEE++E E + E EE+ E+ + EE
Sbjct: 500 EVEEEDEEAEVETTEPAEEDAEDSKMEE 527
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 41.8 bits (98), Expect = 4e-04
Identities = 19/27 (70%), Positives = 24/27 (88%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEEE+EEE++ EEEE E+EEEE+E E
Sbjct: 451 EEEEEEEEEQESEEEEGEDEEEEEEVE 477
Score = 39.9 bits (93), Expect = 0.001
Identities = 20/38 (52%), Positives = 31/38 (81%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + + ++ +EEEEE+EEEE++E EEEE E+EE+EEE
Sbjct: 438 ESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEE 475
Score = 39.5 bits (92), Expect = 0.002
Identities = 21/27 (77%), Positives = 24/27 (88%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEEE+EEEEQE EEEE E+EEE+EE
Sbjct: 450 EEEEEEEEEEQESEEEEGEDEEEEEEV 476
Score = 38.0 bits (88), Expect = 0.007
Identities = 20/36 (55%), Positives = 30/36 (83%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
++ V++ + +EEEEE+EE+E EEEE E+EEEEE+ E
Sbjct: 442 EESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVE 477
Score = 36.8 bits (85), Expect = 0.016
Identities = 19/30 (63%), Positives = 24/30 (80%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E EEE+ EE+EEEEEEEEEEE++ EE
Sbjct: 435 ASQESEEEESVEEEEEEEEEEEEEEQESEE 464
Score = 36.4 bits (84), Expect = 0.019
Identities = 17/28 (60%), Positives = 21/28 (75%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+EEE+E EEEE E+EEEEEE E + E
Sbjct: 456 EEEEQESEEEEGEDEEEEEEVEADNGSE 483
Score = 35.7 bits (82), Expect = 0.037
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
M +E E+EE +EEEEEEEEEEEE++E
Sbjct: 434 MASQESEEEESVEEEEEEEEEEEEEEQES 462
Score = 35.3 bits (81), Expect = 0.041
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEEE+E EE+E E+EEEEEE E +
Sbjct: 455 EEEEEQESEEEEGEDEEEEEEVEADNG 481
Score = 33.7 bits (77), Expect = 0.12
Identities = 16/38 (42%), Positives = 26/38 (68%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++ ++ + +E+E E+EE E EEEEEE E + EEE
Sbjct: 448 EEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEE 485
Score = 33.7 bits (77), Expect = 0.13
Identities = 14/38 (36%), Positives = 26/38 (68%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++ ++ + +E EEE+ E+E+EEEE E + E+E E
Sbjct: 450 EEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 29.9 bits (67), Expect = 2.2
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 39 EEEEEKEEEEQEEEEEEEE---------EEEEQEEEFYTKSPKCLELMLQ 79
+EEEE+E E EEE E EE E++ E + M +
Sbjct: 469 DEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSE 518
Score = 29.9 bits (67), Expect = 2.5
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE E++EEEE+ E + EEE E E
Sbjct: 465 EEGEDEEEEEEVEADNGSEEEMEGSSE 491
Score = 28.3 bits (63), Expect = 6.3
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 45 EEEEQEEEEEEEEEEEEQEEEFYTKS 70
+E E+EE EEEEEEEE+EEE +S
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQES 462
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 41.6 bits (98), Expect = 4e-04
Identities = 19/28 (67%), Positives = 22/28 (78%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E EE+EEEE+E EEEEEEEEE+E F
Sbjct: 303 PEPEEEEEEEEEVPEEEEEEEEEEERTF 330
Score = 40.0 bits (94), Expect = 0.001
Identities = 20/27 (74%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEEE+EE +EEEEEEEEEE EEE
Sbjct: 307 EEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 39.2 bits (92), Expect = 0.003
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E+EEEE+EE EEEEEEEE+EE
Sbjct: 302 PPEPEEEEEEEEEVPEEEEEEEEEEER 328
Score = 38.9 bits (91), Expect = 0.003
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +EEEE+EEE EEEEEEE+EEE
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEE 327
Score = 37.7 bits (88), Expect = 0.007
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E EEEE+EEEE EEEEEE+EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEE 326
Score = 37.3 bits (87), Expect = 0.008
Identities = 21/27 (77%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEEE+EEE EEEEEEEEEEE EE
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFEE 332
Score = 35.4 bits (82), Expect = 0.035
Identities = 18/28 (64%), Positives = 22/28 (78%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+EEEEE+E E+EEEEEEEEE +EE
Sbjct: 306 EEEEEEEEEVPEEEEEEEEEEERTFEEE 333
Score = 33.1 bits (76), Expect = 0.20
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 43 EKEEEEQEEEEEEEEEEEEQEEEF 66
E +EEEEEEEE EE+EEE
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEE 323
Score = 32.7 bits (75), Expect = 0.30
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 45 EEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
E EEEEEEEEE E+EEE + + E
Sbjct: 301 SPPEPEEEEEEEEEVPEEEEEEEEEEERTFE 331
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The
CAF-1 or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression
in addition to DNA-based checkpoints.
Length = 76
Score = 37.6 bits (88), Expect = 6e-04
Identities = 14/28 (50%), Positives = 22/28 (78%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
EEEEE E+ E E+EE+EEE++++ + F
Sbjct: 49 EEEEEGEDLESEDEEDEEEDDDDDMDGF 76
Score = 34.5 bits (80), Expect = 0.008
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E EE+EE E E E+EE+EEE+ +++
Sbjct: 46 AEWEEEEEGEDLESEDEEDEEEDDDDDM 73
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 40.4 bits (94), Expect = 7e-04
Identities = 17/27 (62%), Positives = 23/27 (85%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
KE+E +++EEE+EEEEEEE E EE E+
Sbjct: 131 KEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 40.1 bits (93), Expect = 0.001
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
K K E +E++EEEE+EEEEE E EE EQ
Sbjct: 128 KATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 38.9 bits (90), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ K +E++ +E++EEEEEEEEEE E EE
Sbjct: 119 PKKAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEEN 155
Score = 38.1 bits (88), Expect = 0.004
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K +E+E E+EE+EEEEEEEE E E+ E+
Sbjct: 128 KATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 37.4 bits (86), Expect = 0.008
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
KK ++E +E EEEE+EEEEEE E EE ++
Sbjct: 127 KKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 34.7 bits (79), Expect = 0.052
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
K+ K +E+EE+EEEE+EEE E EE E+
Sbjct: 127 KKATKEDESDEDEEEEEEEEEEEAEVEENEQ 157
Score = 30.0 bits (67), Expect = 1.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE EEE EEE E+ + ++EE
Sbjct: 59 SSEEEGEEETSNEEENNEDSDGNEDEE 85
Score = 30.0 bits (67), Expect = 1.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EE+ EEE EEE E+ + E+E
Sbjct: 58 DSSEEEGEEETSNEEENNEDSDGNEDE 84
Score = 29.7 bits (66), Expect = 1.9
Identities = 21/71 (29%), Positives = 26/71 (36%), Gaps = 32/71 (45%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEE--------------------------------EEEEEE 57
K K+ + E+EEE+EEEE+EE EE EEE
Sbjct: 128 KATKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEEE 187
Query: 58 EEEEQEEEFYT 68
E E E T
Sbjct: 188 SVTEAEAEGTT 198
Score = 29.3 bits (65), Expect = 2.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
EE + + E+E EEE EEE E+
Sbjct: 52 EENGDGDSSEEEGEEETSNEEENNED 77
Score = 28.9 bits (64), Expect = 3.9
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
+E EEE EE+ E+ + E+EE E E T S
Sbjct: 62 EEGEEETSNEEENNEDSDGNEDEEAEAENTTLS 94
Score = 28.5 bits (63), Expect = 4.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE + +EE EEE EEE E+
Sbjct: 52 EENGDGDSSEEEGEEETSNEEENNED 77
Score = 27.7 bits (61), Expect = 9.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE E+E +EE E+ + E++E E
Sbjct: 61 EEEGEEETSNEEENNEDSDGNEDEEAE 87
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 40.7 bits (96), Expect = 9e-04
Identities = 22/36 (61%), Positives = 30/36 (83%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ K KEEEEE+E+E++EEE+EEEEEE E+E+E
Sbjct: 432 KKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKE 467
Score = 40.3 bits (95), Expect = 0.001
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+K+ K K++EEE+EEE++++EEE+EEEEEE EEE + K
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 39.9 bits (94), Expect = 0.001
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+ K+ K+EEEE+EE+E++EEE+EEEEEE +EE+ + K
Sbjct: 427 KKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 39.1 bits (92), Expect = 0.003
Identities = 18/46 (39%), Positives = 33/46 (71%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
++++ +K K ++KEEEE+EE+E++EEE+EE+EEE + +
Sbjct: 423 REEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Score = 38.4 bits (90), Expect = 0.004
Identities = 12/38 (31%), Positives = 28/38 (73%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K++KKI K E++ +EE+++++++ +++E+EEE
Sbjct: 408 ATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEE 445
Score = 37.2 bits (87), Expect = 0.010
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V+ K+ + K+E+++K +++EEEEEEE+E++EEE
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Score = 36.8 bits (86), Expect = 0.013
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K V+K + K EEE+KE++++ +++EEEEE+E+E
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKE 449
Score = 36.4 bits (85), Expect = 0.019
Identities = 12/43 (27%), Positives = 28/43 (65%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
K K +EEE+++++++ +++EEEEEE++E+ + +
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEE 457
Score = 36.1 bits (84), Expect = 0.025
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K KKIK E+ EK+ EE+++E++++ +++EE
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 35.7 bits (83), Expect = 0.034
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + K+ + +EE+E+KEEE++EEEEE EEE+EE+EE+
Sbjct: 430 KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEK 472
Score = 34.5 bits (80), Expect = 0.070
Identities = 13/40 (32%), Positives = 30/40 (75%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V ++ ++ + KE++++ +++EEEEEEE+E+++EE+
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Score = 31.4 bits (72), Expect = 0.70
Identities = 17/35 (48%), Positives = 30/35 (85%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
+++ ++ + KEEE+E+EEEE EEE+EEEEE++++
Sbjct: 441 EEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 40.3 bits (94), Expect = 0.001
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
K+ E K E EQ+E+ EE EEE+ +EE +K K
Sbjct: 303 KLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGK 339
Score = 33.4 bits (76), Expect = 0.18
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+DK +I K E E+ E+ E+ EEE+ EEE ++ K K
Sbjct: 301 EDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLK 345
Score = 29.9 bits (67), Expect = 2.1
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D + E++ E + E E++E+ EE EEE
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEE 326
Score = 29.5 bits (66), Expect = 2.4
Identities = 8/38 (21%), Positives = 23/38 (60%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+ + K +++++E+ +E EE++ EEE ++ ++
Sbjct: 303 KLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 29.2 bits (65), Expect = 3.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 39 EEEEEK---EEEEQEEEEEEEEEEEEQEEE 65
EE E+K E + E E++E+ EE +EE+
Sbjct: 298 EEREDKLSPEIPAKPEIEQDEDSEESEEEK 327
Score = 28.8 bits (64), Expect = 4.2
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 18 SSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+S D + E E++++ EE EEE+ EEE ++
Sbjct: 292 ASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKG 338
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 39.8 bits (94), Expect = 0.001
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EE+EEEEEEEEEEE EEE
Sbjct: 296 AQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 39.1 bits (92), Expect = 0.002
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 40 EEEEKEEEEQEEEEEEEEEEE 60
EE+EEEE+EEEEEE EEE
Sbjct: 300 AAEEEEEEEEEEEEEEPSEEE 320
Score = 38.7 bits (91), Expect = 0.003
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEE 61
E+EEEE+EEEEEEE EEE
Sbjct: 298 AAAAEEEEEEEEEEEEEEPSEEE 320
Score = 37.9 bits (89), Expect = 0.004
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEE 59
EEE+EEEE+EEEEE EEE
Sbjct: 299 AAAEEEEEEEEEEEEEEPSEEE 320
Score = 37.9 bits (89), Expect = 0.005
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+D++ + + + + EEEE+EEEEEEEEE E+E
Sbjct: 284 LDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 37.5 bits (88), Expect = 0.007
Identities = 15/25 (60%), Positives = 18/25 (72%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEE 64
+ EEE+EEEEEEEEEE +EE
Sbjct: 296 AQAAAAEEEEEEEEEEEEEEPSEEE 320
Score = 36.8 bits (86), Expect = 0.012
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++K + + +EEEEEEEEEEEE+ E
Sbjct: 287 ELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSE 318
Score = 36.8 bits (86), Expect = 0.012
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ DK ++KE + + EEEEEEEEEEE+EE
Sbjct: 277 ALADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEP 316
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 39.2 bits (92), Expect = 0.001
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEE--EEEEQEEEFYTKSPKCLEL 76
K +++EE EE E EE E+E EEE EEE + E + K EL
Sbjct: 4 KNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAEL 49
Score = 30.0 bits (68), Expect = 1.3
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+ V ++ +++ E+E +EE +EE E E +EE+ +
Sbjct: 5 NEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAK 45
Score = 28.4 bits (64), Expect = 3.4
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E EEE EEE E E +EE+ + E E
Sbjct: 24 EVEEETVEEESEAELLDEEQAKIAELE 50
Score = 27.7 bits (62), Expect = 7.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE +EE E E +EE+ + E E +
Sbjct: 26 EEETVEEESEAELLDEEQAKIAELEAK 52
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 40.6 bits (95), Expect = 0.001
Identities = 16/38 (42%), Positives = 30/38 (78%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
+K++K K+EE+++E+ E+ + EE +EE EE+E+ FY +
Sbjct: 276 LKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYE 313
Score = 33.3 bits (76), Expect = 0.21
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 34 KIKMKEEEEEKEEE--EQEEEEEEEEEEEEQEEEFYTK 69
K K +E++EEK EE +E +EE EEEE+ E Y K
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEK 317
Score = 33.3 bits (76), Expect = 0.22
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
K +K+ K +++EE+ EE + EE +EE EEEE+
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGF 310
Score = 30.6 bits (69), Expect = 1.4
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+ K K+ K +E+ EE + EE +EE EEEE+ E
Sbjct: 278 ELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYE 313
Score = 28.3 bits (63), Expect = 6.8
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K+ +K + K EE + EE ++E EEEE+ E E+
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEK 317
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 38.4 bits (90), Expect = 0.001
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K + K ++EEEE+EE E EE +EEE+ +E E+E
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKE 127
Score = 38.0 bits (89), Expect = 0.002
Identities = 16/36 (44%), Positives = 28/36 (77%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+V+K+ +++E++EEEE+E E EE +EEE+ +E
Sbjct: 88 KKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDEL 123
Score = 35.7 bits (83), Expect = 0.012
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ ++ + + E EE +EEEQ +E E+E + + E+
Sbjct: 98 KKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREK 135
Score = 35.3 bits (82), Expect = 0.014
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D K ++ + +E E E+ +EE++ +E E+E + + E
Sbjct: 97 DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKRE 134
Score = 34.2 bits (79), Expect = 0.040
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R K K+ +++++EEE+EEE E EE +EE++ +
Sbjct: 87 RKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQID 121
Score = 31.5 bits (72), Expect = 0.27
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +EEE+ +E E+E + + E+ +E E
Sbjct: 113 ELDEEEQIDELLEKELAKLKREKRRENE 140
Score = 31.1 bits (71), Expect = 0.37
Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 6/47 (12%)
Query: 26 VVDDKRVKKI-----KMKEE-EEEKEEEEQEEEEEEEEEEEEQEEEF 66
V+ K KK+ K+++ +K+E+E+EEEEE E EE ++EE+
Sbjct: 74 VLGKKDFKKLLKWRKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQI 120
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 40.1 bits (94), Expect = 0.001
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
++D +I+ E + EEEE EEEEEEE+E+E +E
Sbjct: 369 QDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDE 416
Score = 35.5 bits (82), Expect = 0.040
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D + + +E+EEE+EEE+++E +E ++E+ EE
Sbjct: 383 DANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEE 420
Score = 34.7 bits (80), Expect = 0.059
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
EEEE++EEEE+E+E+E +E +EEF
Sbjct: 390 DEEEEDEEEEEEEDEDEGPSKEHSDDEEF 418
Score = 34.3 bits (79), Expect = 0.091
Identities = 16/44 (36%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEE--EEEEQEEE 65
+ ++D ++ +EE+EE+EEEE E+E +E ++EE EE+
Sbjct: 378 ALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEED 421
Score = 34.0 bits (78), Expect = 0.12
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
+EEEE EEEE+EE+E+E +E ++E +
Sbjct: 389 DDEEEEDEEEEEEEDEDEGPSKEHSDDEEF 418
Score = 31.3 bits (71), Expect = 0.89
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
EEEEE+E+E++ +E ++EE +E++ +K
Sbjct: 396 EEEEEEEDEDEGPSKEHSDDEEFEEDDVESK 426
Score = 29.7 bits (67), Expect = 2.4
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
EEEEE++E+E +E ++EE E+++
Sbjct: 397 EEEEEEDEDEGPSKEHSDDEEFEEDDVESKYE 428
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This
is a family of uncharacterized proteins.
Length = 449
Score = 40.0 bits (93), Expect = 0.001
Identities = 13/48 (27%), Positives = 31/48 (64%)
Query: 18 SSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
S ++ ++D K+ +++ +E EEE EEE+++EE++++ ++E
Sbjct: 19 SLDYKEKLTLNDTMKKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDE 66
Score = 36.1 bits (83), Expect = 0.022
Identities = 10/37 (27%), Positives = 29/37 (78%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ ++K+ + EEE EEE+ +EE+++++++E+++++
Sbjct: 35 ENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDD 71
Score = 33.0 bits (75), Expect = 0.23
Identities = 8/36 (22%), Positives = 27/36 (75%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R + +EE E+E++++E+++++++E+E+ +++
Sbjct: 38 IRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDD 73
Score = 31.9 bits (72), Expect = 0.45
Identities = 7/36 (19%), Positives = 29/36 (80%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++ K +E EE++++E++++++++E+E++ +++
Sbjct: 39 RKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDD 74
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 39.7 bits (93), Expect = 0.002
Identities = 16/28 (57%), Positives = 21/28 (75%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +E+E EEEEQ +E EEEE E+ EEE
Sbjct: 369 EVDEDEDEEEEQRSDEHEEEEGEDSEEE 396
Score = 38.6 bits (90), Expect = 0.003
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ E+E+E+EE+ +E EEEE E+ E+E
Sbjct: 369 EVDEDEDEEEEQRSDEHEEEEGEDSEEEGS 398
Score = 37.0 bits (86), Expect = 0.010
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE +E E+EE+E+ +E EEEE ++ E
Sbjct: 367 FEEVDEDEDEEEEQRSDEHEEEEGEDSE 394
Score = 36.6 bits (85), Expect = 0.016
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
+ DKR ++ + EE E+E++EEE+ +E EEE+ E+ +
Sbjct: 354 MRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEG 397
Score = 35.5 bits (82), Expect = 0.036
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEE++ +E +EEE E+ EEE Q E
Sbjct: 376 EEEEQRSDEHEEEEGEDSEEEGSQSRE 402
Score = 35.5 bits (82), Expect = 0.037
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+EEE++ ++ EEEE E+ EEE +
Sbjct: 374 EDEEEEQRSDEHEEEEGEDSEEEGSQS 400
Score = 35.1 bits (81), Expect = 0.047
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+EEEE+ +E EEEE E+ EEE +
Sbjct: 375 DEEEEQRSDEHEEEEGEDSEEEGSQSR 401
Score = 34.7 bits (80), Expect = 0.051
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+D + V + + +EEE+ +E E+EE E+ EEE + E+
Sbjct: 362 LDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSRED 403
Score = 32.0 bits (73), Expect = 0.43
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
VD+ ++ + + +E E+EE E EEE + E+ E
Sbjct: 370 VDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408
Score = 30.5 bits (69), Expect = 1.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+D+ ++ + EEEE E+ E+E + E+ E +
Sbjct: 374 EDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSD 411
Score = 28.9 bits (65), Expect = 3.8
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +EEE E EEE + E+ E +
Sbjct: 383 DEHEEEEGEDSEEEGSQSREDGSSESSSDVG 413
Score = 28.9 bits (65), Expect = 4.2
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++++ +EE E+ EEE + E+ E
Sbjct: 377 EEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGS 414
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 40.0 bits (93), Expect = 0.002
Identities = 14/37 (37%), Positives = 28/37 (75%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+D + + ++++E E+E+ ++EE++EEEEEE+EE
Sbjct: 143 EDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEE 179
Score = 39.3 bits (91), Expect = 0.003
Identities = 12/28 (42%), Positives = 25/28 (89%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
++++++E+E +++EE++EEEEE+EEE
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEEEEIK 181
Score = 32.3 bits (73), Expect = 0.38
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 5/50 (10%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEE-----EEEEEEEEQEEEFYTKS 70
V+DD + + ++EE+ EEEE+EEEE +E+EE+E E+ Y KS
Sbjct: 152 VIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKS 201
Score = 31.6 bits (71), Expect = 0.74
Identities = 9/33 (27%), Positives = 21/33 (63%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
M + +++ E+E+E++++EE+ EEE +
Sbjct: 145 MSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEE 177
Score = 28.5 bits (63), Expect = 6.2
Identities = 7/41 (17%), Positives = 26/41 (63%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++ +R + +E+ ++ ++++E+E+E+++ EE+
Sbjct: 129 MIIIKRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEED 169
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 38.2 bits (89), Expect = 0.002
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPR 83
V+ ++ +++ E+++EEE EEEEE+ EEE E+EEE Y + P E
Sbjct: 58 GVLESSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSY 117
Query: 84 ASIL 87
+
Sbjct: 118 DELP 121
Score = 31.2 bits (71), Expect = 0.40
Identities = 21/48 (43%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 37 MKEEEEEKEEEEQEEEEEE-------EEEEEEQEEEFYTKSPKCLELM 77
EEEEE EEE EEEEEE EEEEE+ + +P+ E +
Sbjct: 82 SAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREEL 129
Score = 28.5 bits (64), Expect = 3.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
EEE+E+ + +E EE EE EEF
Sbjct: 106 FGEEEEEDGDSYDELPTPEEREELREEF 133
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria. Proteins
in this family are approximately 90 amino acids in
length. There are two completely conserved L residues
that may be functionally important.
Length = 70
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
KK ++K EEE++EEEE+ + EE +E E+
Sbjct: 25 KKKELKAEEEKREEEEEARKREERKEREKN 54
Score = 35.0 bits (81), Expect = 0.005
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+K K++E + EEE++EEEEE + EE +E E
Sbjct: 21 KLKAKKKELKAEEEKREEEEEARKREERKERE 52
Score = 33.5 bits (77), Expect = 0.015
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+E + +EE+ +EEEE + EE ++ E+
Sbjct: 25 KKKELKAEEEKREEEEEARKREERKEREK 53
Score = 31.9 bits (73), Expect = 0.052
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 36 KMKEEEEE-KEEEEQEEEEEEEEEEEEQEEEFYTKS 70
K+K +++E K EEE+ EEEEE + EE++E KS
Sbjct: 21 KLKAKKKELKAEEEKREEEEEARKREERKEREKNKS 56
Score = 30.8 bits (70), Expect = 0.13
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K++K +EE+ E+EEE ++ EE +E E+ + EE
Sbjct: 27 KELKAEEEKREEEEEARKREERKEREKNKSFEE 59
Score = 28.8 bits (65), Expect = 0.70
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K +EEEE ++ EE++E E+ + EE E
Sbjct: 35 KREEEEEARKREERKEREKNKSFEELLNES 64
Score = 28.5 bits (64), Expect = 1.0
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K ++ + +EEE K EE +E E+ + EE E E
Sbjct: 30 KAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 25.8 bits (57), Expect = 9.0
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + + K++E + EEE+ EEEEE ++ E
Sbjct: 18 LLAKLKAKKKELKAEEEKREEEEEARKRE 46
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 38.9 bits (91), Expect = 0.002
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 4/38 (10%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
KIK +E EE+E+EEEE+ EEE+ +EEE T +P
Sbjct: 153 KIK----KERAEEKEREEEEKAAEEEKAREEEILTGNP 186
Score = 34.3 bits (79), Expect = 0.060
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++E E+ K+E +E+E EEEE+ E+E+
Sbjct: 148 LRELEKIKKERAEEKEREEEEKAAEEEKA 176
Score = 33.5 bits (77), Expect = 0.088
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEE 58
++KK + +E+E E+EE+ EEE+ EEE
Sbjct: 153 KIKKERAEEKEREEEEKAAEEEKAREEE 180
Score = 30.1 bits (68), Expect = 1.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEE 55
K+ + + + EEEEK EE++ EEE
Sbjct: 155 KKERAEEKEREEEEKAAEEEKAREEE 180
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 36.4 bits (85), Expect = 0.002
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 40 EEEEKEEEEQEEEEEEEEEEE 60
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 36.4 bits (85), Expect = 0.002
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEE 59
EEE++EEEEEEEE++
Sbjct: 60 AAAAAAAEEEKKEEEEEEEEDD 81
Score = 35.3 bits (82), Expect = 0.006
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 41 EEEKEEEEQEEEEEEEEEEEE 61
EE+++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 34.1 bits (79), Expect = 0.013
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 45 EEEEQEEEEEEEEEEEEQEEEF 66
EEE++EEEEEEE++++
Sbjct: 62 AAAAAEEEKKEEEEEEEEDDDM 83
Score = 34.1 bits (79), Expect = 0.015
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 43 EKEEEEQEEEEEEEEEEEEQEEE 65
EEE++EEEEEE+E++
Sbjct: 59 AAAAAAAAEEEKKEEEEEEEEDD 81
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 38.2 bits (89), Expect = 0.002
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V++ R + + K+ E +E EEEE EE E
Sbjct: 139 VNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAE 177
Score = 30.1 bits (68), Expect = 1.1
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KK+ E E++ E EE EEE
Sbjct: 137 KKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEE 169
Score = 29.0 bits (65), Expect = 2.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K+V + + + E+K E EE EE+E E
Sbjct: 136 EKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAE 172
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 39.0 bits (91), Expect = 0.002
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
EEEEE+EEEE+EE E E EE F
Sbjct: 403 EEEEEEEEEEEEEAAEAEAPMEEPVPGF 430
Score = 35.9 bits (83), Expect = 0.026
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEE+EEEE+EEE E E E+
Sbjct: 402 AEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 35.9 bits (83), Expect = 0.026
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +EEEE+EEEEEEE E E E
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPME 424
Score = 35.6 bits (82), Expect = 0.029
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E+EEEE+EEEEEE E E EE
Sbjct: 399 ERWAEEEEEEEEEEEEEAAEAEAPMEE 425
Score = 34.8 bits (80), Expect = 0.050
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEE 59
V++ +EEEEE+EEEE+ E E EE
Sbjct: 398 VERWAEEEEEEEEEEEEEAAEAEAPMEE 425
Score = 32.5 bits (74), Expect = 0.31
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D+ + +K K + E+EEEEEEEEEEE E E
Sbjct: 384 DELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAE 420
Score = 31.7 bits (72), Expect = 0.53
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 28 DDKRVKKIK--MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELM 77
D + +++ +KE+ E EEEEEEEEEEEE+ E + +
Sbjct: 379 DATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGF 430
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 34.6 bits (80), Expect = 0.003
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEE 64
EEEK E+E+E E+EEE EE+ + +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 31.5 bits (72), Expect = 0.043
Identities = 13/20 (65%), Positives = 17/20 (85%)
Query: 46 EEEQEEEEEEEEEEEEQEEE 65
EEE+ E+EEE E+EEE EE+
Sbjct: 22 EEEKREDEEENEDEEEGEEQ 41
Score = 31.5 bits (72), Expect = 0.045
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEE 61
EEE+ ++EEE E+EEE EE+ E
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEV 44
Score = 31.5 bits (72), Expect = 0.047
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQE 63
EEE++E+EE+ E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 30.0 bits (68), Expect = 0.13
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEE 61
+EE+ E EEE ++EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 28.1 bits (63), Expect = 0.68
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 45 EEEEQEEEEEEEEEEEEQEEE 65
EEE++E+EEE E+EEE +E+
Sbjct: 22 EEEKREDEEENEDEEEGEEQS 42
Score = 27.3 bits (61), Expect = 1.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 48 EQEEEEEEEEEEEEQEEEF 66
E+E+ E+EEE E+E+E E
Sbjct: 22 EEEKREDEEENEDEEEGEE 40
Score = 26.2 bits (58), Expect = 3.3
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 36 KMKEEEEEKEEEEQEEEEEEE 56
K ++EEE ++EEE EE+ E +
Sbjct: 25 KREDEEENEDEEEGEEQSEVK 45
Score = 25.4 bits (56), Expect = 7.2
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 50 EEEEEEEEEEEEQEEEFYTKS 70
EEE+ E+EEE E EEE +S
Sbjct: 22 EEEKREDEEENEDEEEGEEQS 42
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 38.2 bits (89), Expect = 0.005
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 15 VSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ I S + +D +V ++ + EEEE + E EE E E+ E +E+
Sbjct: 368 IDIKDSAEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDAR 419
Score = 33.2 bits (76), Expect = 0.20
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQE--EEEEEEEEEEEQEEEFYTKSPK 72
+R + +++ E+ E+ EE+ E E+E E E+E P+
Sbjct: 397 ALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPE 443
Score = 32.8 bits (75), Expect = 0.22
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+R ++ ++ E EE+ E EQ E EE+ E
Sbjct: 391 QREEEEALQREAEERLEAEQAERAEEDARLRELYPL 426
Score = 30.1 bits (68), Expect = 1.8
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E E E+E+E EE + EEE
Sbjct: 418 ARLRELYPLPEDEFEDEDELEEAQPEEE 445
Score = 29.8 bits (67), Expect = 2.1
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++E E+E ++E+E EE + EE+EE
Sbjct: 419 RLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 28.6 bits (64), Expect = 4.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
E E E+++E EE + EEEE+
Sbjct: 424 YPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 28.2 bits (63), Expect = 7.3
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
+D R++++ E+E ++E+E EE + EEEEE
Sbjct: 416 EDARLRELYPLPEDEFEDEDELEEAQPEEEEEAR 449
Score = 27.8 bits (62), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++E E E+E EE + EEE+E
Sbjct: 423 LYPLPEDEFEDEDELEEAQPEEEEEAR 449
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 37.7 bits (88), Expect = 0.006
Identities = 17/45 (37%), Positives = 26/45 (57%)
Query: 21 QCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ VV ++ E+ EE+EEE+ E E+E+EE+E EEE
Sbjct: 266 KGEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEE 310
Score = 36.2 bits (84), Expect = 0.015
Identities = 17/42 (40%), Positives = 30/42 (71%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
VV D+ + +++ EEE+EE++ E E+E+EE+E++EEE
Sbjct: 270 EVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEE 311
Score = 36.2 bits (84), Expect = 0.017
Identities = 16/30 (53%), Positives = 25/30 (83%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K +EEEEE + E E+E+EE+E+EEE+E++
Sbjct: 285 KAEEEEEEDDYSESEDEDEEDEDEEEEEDD 314
Score = 36.2 bits (84), Expect = 0.017
Identities = 14/38 (36%), Positives = 29/38 (76%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ + ++ EEEEE+++ + E+E+EE+E+EE+EE+
Sbjct: 276 EEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEED 313
Score = 35.4 bits (82), Expect = 0.029
Identities = 13/27 (48%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE++ E E+++EE+E+EEEEE+ +E
Sbjct: 291 EEDDYSESEDEDEEDEDEEEEEDDDEG 317
Score = 35.0 bits (81), Expect = 0.041
Identities = 16/32 (50%), Positives = 25/32 (78%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K + +EEE++ E E E+EE+E+EEEEE ++E
Sbjct: 285 KAEEEEEEDDYSESEDEDEEDEDEEEEEDDDE 316
Score = 32.7 bits (75), Expect = 0.24
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E++ + E+E EE+E+EEEEE++ E +
Sbjct: 291 EEDDYSESEDEDEEDEDEEEEEDDDEGD 318
Score = 32.3 bits (74), Expect = 0.28
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++E E+ EEEE+E++ E E+E+E++E+
Sbjct: 278 DLEELLEKAEEEEEEDDYSESEDEDEEDEDE 308
Score = 31.9 bits (73), Expect = 0.40
Identities = 10/27 (37%), Positives = 23/27 (85%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ E E+E++E+E+EEEEE++++ ++
Sbjct: 293 DDYSESEDEDEEDEDEEEEEDDDEGDK 319
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain.
This family represents the C-terminus (approximately
300 residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 37.2 bits (86), Expect = 0.006
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ ++ E EEE E E+EEEE EEEEE + E++
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDD 32
Score = 35.7 bits (82), Expect = 0.021
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EEE+E EEE+EE EEEEE + E + E
Sbjct: 4 VLELEEEDESGEEEEEESEEEEETDSEDDME 34
Score = 31.4 bits (71), Expect = 0.48
Identities = 17/33 (51%), Positives = 21/33 (63%)
Query: 47 EEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
E +EE+E EEEEEE EEE T S +E L+
Sbjct: 6 ELEEEDESGEEEEEESEEEEETDSEDDMEPRLK 38
Score = 31.0 bits (70), Expect = 0.79
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
E +EE+E EEEEEE EEEE+ + P+
Sbjct: 6 ELEEEDESGEEEEEESEEEEETDSEDDMEPR 36
Score = 27.6 bits (61), Expect = 8.6
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
KR+K+ + + EE E+E+ E E+ EEE E
Sbjct: 126 KRIKRDREEREEMEREKAEIEKMRNMTEEERRAEL 160
Score = 27.6 bits (61), Expect = 9.3
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
KK ++ +E E+E +++ EEE + + E+
Sbjct: 44 KKDRITIQEREREAAKEKALEEEAKRKAEE 73
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel,
four-helix bundle structure with a large hydrophobic
patch in which 23 residues of one monomer form van der
Waals contacts with the other monomer. This CENP-B
dimer configuration may be suitable for capturing two
distant CENP-B boxes during centromeric heterochromatin
formation.
Length = 101
Score = 35.1 bits (80), Expect = 0.008
Identities = 8/28 (28%), Positives = 23/28 (82%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ + + +EEE +++E+EE+++E+ +E+
Sbjct: 10 EDSDSDSDEEEDDDDEDEEDDDEDDDED 37
Score = 34.0 bits (77), Expect = 0.019
Identities = 9/24 (37%), Positives = 21/24 (87%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQE 63
+EEE +++E EE+++E+++E++ E
Sbjct: 17 DEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 34.0 bits (77), Expect = 0.021
Identities = 7/26 (26%), Positives = 24/26 (92%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ +EE+++++++EE+++E+++E+ +E
Sbjct: 15 DSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 34.0 bits (77), Expect = 0.022
Identities = 7/27 (25%), Positives = 24/27 (88%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE+ + + +E+E++++E+EE+++++++
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDD 35
Score = 33.6 bits (76), Expect = 0.027
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELM 77
+ + EEE+ ++E+EE+++E++ E++ P E M
Sbjct: 13 DSDSDEEEDDDDEDEEDDDEDDDEDDDEVPVPSFGEAM 50
Score = 33.2 bits (75), Expect = 0.036
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E EE+ + + EEE++++E+EE+ +E+
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDED 33
Score = 33.2 bits (75), Expect = 0.042
Identities = 8/24 (33%), Positives = 22/24 (91%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEE 61
EEE++ +E+E++++E+++E+++E
Sbjct: 17 DEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 32.8 bits (74), Expect = 0.057
Identities = 6/27 (22%), Positives = 24/27 (88%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + ++EE++ +E+EE+++E+++++++
Sbjct: 13 DSDSDEEEDDDDEDEEDDDEDDDEDDD 39
Score = 31.7 bits (71), Expect = 0.13
Identities = 8/29 (27%), Positives = 23/29 (79%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ EE+ + ++EE++++E+EE++ E++
Sbjct: 6 LEGEEDSDSDSDEEEDDDDEDEEDDDEDD 34
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 37.2 bits (87), Expect = 0.009
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 30 KRVKKIKMKEEEE-------EKEEEEQEEEEEEEEEEEEQEEEF 66
K +K + +EEE EK E E+E E E E +EE+E E
Sbjct: 141 KEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREV 184
Score = 36.0 bits (84), Expect = 0.021
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+IK +E+EEE+ +E EEE + EE+E E
Sbjct: 30 KRIKAEEKEEERRIDEMMEEERLKALAEEEERE 62
Score = 35.7 bits (83), Expect = 0.029
Identities = 18/43 (41%), Positives = 24/43 (55%), Gaps = 11/43 (25%)
Query: 34 KIKMKEEEEEKEEEE-----------QEEEEEEEEEEEEQEEE 65
+I+ KEEE+E+E EE E EEE E E E++EE
Sbjct: 137 RIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEE 179
Score = 34.5 bits (80), Expect = 0.069
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 6/43 (13%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEE------EEEEEEEEEEQEEE 65
++ V +++ ++EE E E EE +E +EE E +E ++E+E
Sbjct: 181 EREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKE 223
Score = 34.1 bits (79), Expect = 0.079
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEE-----EEQEEE 65
+ K ++ + K E EE+ E E+ E +EE+E E +QEE
Sbjct: 152 ELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEA 194
Score = 33.7 bits (78), Expect = 0.10
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 20 SQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ ++ KK EE+EE+ ++ EEE + E+EE
Sbjct: 16 AKVNKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEER 61
Score = 32.2 bits (74), Expect = 0.31
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
K+ + K+E + EE+ EE+EE +EE +EE
Sbjct: 227 KRRRQKQELQRAREEQIEEKEERLQEERAEEEAER 261
Score = 32.2 bits (74), Expect = 0.36
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 30 KRVKKIKMKEE-------EEEKEEEEQEEEEEEEEEEEEQEE 64
KR+K + +EE EEE+ + EEEE E + +EE+ E
Sbjct: 30 KRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERRE 71
Score = 31.4 bits (72), Expect = 0.67
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++E+EE + E +EE EE E EE+ E
Sbjct: 297 IEEKEERRAAEREEELEEGERLREEEAER 325
Score = 30.6 bits (70), Expect = 1.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K + + E E+E EE E EEE E + + EE
Sbjct: 300 KEERRAAEREEELEEGERLREEEAERQARIEE 331
Score = 30.3 bits (69), Expect = 1.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EE+EE+ E+EEE EE E E+E E
Sbjct: 295 QQIEEKEERRAAEREEELEEGERLREEEAE 324
Score = 30.3 bits (69), Expect = 1.6
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEE------EEEEEEEEEQEEE 65
+ + K + +EE+ EEE E E E+EE E+E E+
Sbjct: 240 EEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEK 281
Score = 29.9 bits (68), Expect = 2.1
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ +EE E +E+++E+EE E+ Q++E
Sbjct: 204 LRADLYQEEYERKERQKEKEEAEKRRRQKQE 234
Score = 29.5 bits (67), Expect = 2.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 12/48 (25%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEE------------EEEEEEEEEEQEEE 65
+R+K + +EE E K +EE+ E E+ +EE EE+ +E
Sbjct: 50 ERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQE 97
Score = 29.1 bits (66), Expect = 2.9
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ E EEE EE E+ EEE E + +EE
Sbjct: 304 RAAEREEELEEGERLREEEAERQARIEEE 332
Score = 29.1 bits (66), Expect = 3.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEE------EEEEEEEQEEE 65
R ++I+ KEE ++E E+E E E E+EE EQE
Sbjct: 239 REEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENA 279
Score = 28.7 bits (65), Expect = 3.9
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Query: 27 VDDKRVKKIKMKEEE-------EEKEEEEQEEEEEEEEEEEEQEEE 65
+++K+ K + KEEE EE+ + EEEE E + +E+ E
Sbjct: 26 IEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERRE 71
Score = 28.0 bits (63), Expect = 7.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
I+ KEE E EE+ EE E EEE + +
Sbjct: 297 IEEKEERRAAEREEELEEGERLREEEAERQA 327
Score = 28.0 bits (63), Expect = 7.8
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KR K+ K++EE +E EE+ E +EEE+E E +EE
Sbjct: 119 KREKQKKLREEIDE-FNEERIERKEEEKEREREEEL 153
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 35.3 bits (82), Expect = 0.009
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+D++ + EE++ EEE + + EE +E E E+++
Sbjct: 89 IDERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 33.8 bits (78), Expect = 0.038
Identities = 11/37 (29%), Positives = 26/37 (70%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D+R + + ++EE++ +EEE + + EE +E E ++++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 36.0 bits (83), Expect = 0.009
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
EE+EE+ E+ ++ +EE+EE EE EEE S
Sbjct: 32 EEDEEEMEDWEDSLDEEDEEAEEVEEETAASSK 64
Score = 33.0 bits (75), Expect = 0.10
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KK+K++ + EEE+ + + EE EE+EE+ E+
Sbjct: 5 GNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMED 40
Score = 31.8 bits (72), Expect = 0.24
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
EE EE EEE ++ E+ +EE+EE EE
Sbjct: 29 EEVEEDEEEMEDWEDSLDEEDEEAEEVE 56
Score = 31.4 bits (71), Expect = 0.37
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEE 59
E+ E+ +EE EE EE EEE
Sbjct: 37 EMEDWEDSLDEEDEEAEEVEEET 59
Score = 29.9 bits (67), Expect = 1.2
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 39 EEEEEKEE---EEQEEEEEEEEEEEEQEEEFYTKSPKCLEL 76
EEE E E +E++EE EE EEE + + S K
Sbjct: 35 EEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQ 75
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 36.8 bits (86), Expect = 0.011
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ ++ +K EEE++EE QE++EE+++EE E +
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLA 301
Score = 29.9 bits (68), Expect = 1.5
Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 29 DKRVKKIKMKEEEEE----KEEEEQEEEEEEEEE--EEEQ 62
++++ K +E +EE KEE+++EE E + + EEQ
Sbjct: 269 EEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQ 308
Score = 29.1 bits (66), Expect = 2.7
Identities = 14/38 (36%), Positives = 27/38 (71%), Gaps = 2/38 (5%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEE--EEEEEEEQEEE 65
++V K + +EEE+ + E+E +EE E++EE+++EE
Sbjct: 259 RKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEER 296
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM).
This family consists of several Plasmodium falciparum
SPAM (secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the
alanine heptad-repeat domain. Heptad repeats in which
the a and d position contain hydrophobic residues
generate amphipathic alpha-helices which give rise to
helical bundles or coiled-coil structures in proteins.
SPAM is an example of a P. falciparum antigen in which
a repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 36.0 bits (83), Expect = 0.011
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +EE EE E+ E EEE E+EEEEE++EE
Sbjct: 57 EDEEEIEEPEDIEDEEEIVEDEEEEEEDEE 86
Score = 34.8 bits (80), Expect = 0.024
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
+++ ++I+ E+ E++EE ++EEEEEE+EE+ + + K
Sbjct: 55 EEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKN 98
Score = 34.8 bits (80), Expect = 0.028
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 7/58 (12%)
Query: 15 VSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEE-------EEEEQEEE 65
V I+S ++ +++ VK K +++EEE+EE+E+E EE E+ E+EE+EEE
Sbjct: 26 VKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEE 83
Score = 33.3 bits (76), Expect = 0.083
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++ ++ + E+ E EEE E+EEEEEE+EE+ +
Sbjct: 54 EEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDL 91
Score = 29.1 bits (65), Expect = 2.1
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+EE+EEE++E+ + ++ E++ +
Sbjct: 76 EDEEEEEEDEEDNVDLKDIEKKNIND 101
Score = 27.9 bits (62), Expect = 5.1
Identities = 9/32 (28%), Positives = 21/32 (65%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
E+EEE+EE+E++ + ++ E++ + F +
Sbjct: 76 EDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQ 107
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family
is found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 35.4 bits (82), Expect = 0.012
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E+E ++EEE +++ ++ +EE EE+E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGE 28
Score = 33.8 bits (78), Expect = 0.040
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
E +EE+E E+ ++ +EE EEEE E+ +
Sbjct: 3 EPDEEEELEDDIDDLDEEAEEEEDGEDLF 31
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family.
This family includes the HABP4 family of
hyaluronan-binding proteins, and the PAI-1 mRNA-binding
protein, PAI-RBP1. HABP4 has been observed to bind
hyaluronan (a glucosaminoglycan), but it is not known
whether this is its primary role in vivo. It has also
been observed to bind RNA, but with a lower affinity
than that for hyaluronan. PAI-1 mRNA-binding protein
specifically binds the mRNA of type-1 plasminogen
activator inhibitor (PAI-1), and is thought to be
involved in regulation of mRNA stability. However, in
both cases, the sequence motifs predicted to be
important for ligand binding are not conserved
throughout the family, so it is not known whether
members of this family share a common function.
Length = 106
Score = 34.7 bits (80), Expect = 0.012
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K +++E++ +EE +E EEEE EEE+++E
Sbjct: 47 KNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 32.8 bits (75), Expect = 0.067
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K E EEK+ E+E +E EEEE EEE
Sbjct: 46 EKNEVEEKQAVEEEANKEGVVEEEEVEEE 74
Score = 32.4 bits (74), Expect = 0.090
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYT 68
EE++ EEE +E EEEE EE+E++ T
Sbjct: 51 EEKQAVEEEANKEGVVEEEEVEEEEDKEMT 80
Score = 31.2 bits (71), Expect = 0.19
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
EEE KE +EEE EEEE++E EE+
Sbjct: 56 VEEEANKEGVVEEEEVEEEEDKEMTLEEY 84
Score = 30.5 bits (69), Expect = 0.34
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 39 EEEEEKEEEEQEEEEEEEEE---EEEQEEEFYTKS 70
EEE+ + EE+Q EEE +E EEE+ EE K
Sbjct: 44 EEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 27.8 bits (62), Expect = 3.1
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEEK E E+++ EEE +E EE
Sbjct: 43 EEEEKNEVEEKQAVEEEANKEGVVEE 68
Score = 26.6 bits (59), Expect = 8.7
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEE---EEEEEEQEE 64
V++K+ + + +E +EEE +EEE++E EE E+ +E
Sbjct: 48 NEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQE 90
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 37.3 bits (87), Expect = 0.012
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+ + EEE++E+E+ ++E++EE+EEE K K
Sbjct: 348 DVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKK 381
Score = 35.7 bits (83), Expect = 0.034
Identities = 11/27 (40%), Positives = 23/27 (85%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE+ + +EE++EE+E+ ++E+++EEE
Sbjct: 346 EEDVDLSDEEEDEEDEDSDDEDDEEEE 372
Score = 35.4 bits (82), Expect = 0.049
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+ +E+E+EE E+ ++E++EEEE+EE+ K
Sbjct: 350 DLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKS 383
Score = 35.0 bits (81), Expect = 0.049
Identities = 15/45 (33%), Positives = 30/45 (66%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
DD ++ + +EE++EE+++ ++E++EEEEE+E+E K
Sbjct: 340 DDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSA 384
Score = 35.0 bits (81), Expect = 0.057
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+EEE EE+E ++E++EEEEEE++E+ KS +
Sbjct: 352 SDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAE 385
Score = 31.9 bits (73), Expect = 0.56
Identities = 11/28 (39%), Positives = 24/28 (85%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++EEEE++ + E+EE+++++ EE+EE+
Sbjct: 321 EDEEEEEDGVDDEDEEDDDDDLEEEEED 348
Score = 31.9 bits (73), Expect = 0.57
Identities = 11/31 (35%), Positives = 24/31 (77%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +EEEE+ ++E EE+++++ EEEE++ +
Sbjct: 320 EEDEEEEEDGVDDEDEEDDDDDLEEEEEDVD 350
Score = 31.9 bits (73), Expect = 0.58
Identities = 9/28 (32%), Positives = 21/28 (75%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++++ +EEEE + +EEE+EE+++ +
Sbjct: 338 DDDDLEEEEEDVDLSDEEEDEEDEDSDD 365
Score = 31.5 bits (72), Expect = 0.64
Identities = 14/40 (35%), Positives = 27/40 (67%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
DD + EE+EE+EE+ ++E+EE+++++ +EEE
Sbjct: 307 EPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEE 346
Score = 31.5 bits (72), Expect = 0.76
Identities = 15/35 (42%), Positives = 28/35 (80%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+EE+EE E+ + E++EEEEEEE+E++++ +S +
Sbjct: 354 EEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388
Score = 31.1 bits (71), Expect = 1.0
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++++ EEEE++ + +EEE+EE E+
Sbjct: 337 DDDDDLEEEEEDVDLSDEEEDEEDEDS 363
Score = 30.7 bits (70), Expect = 1.2
Identities = 11/28 (39%), Positives = 22/28 (78%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++EE++ ++ E+EEE+ + +EEE EE+
Sbjct: 333 EDEEDDDDDLEEEEEDVDLSDEEEDEED 360
Score = 30.4 bits (69), Expect = 1.5
Identities = 13/42 (30%), Positives = 29/42 (69%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQC 80
E+EE+++ +++++EEEEEEE+E+++++ + L C
Sbjct: 356 EDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSELPFTFPC 397
Score = 30.4 bits (69), Expect = 1.5
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE+ ++E++E+++++ EEEEE +
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDVDL 351
Score = 30.0 bits (68), Expect = 1.8
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE+++ + EE+EE+ + +EEE++E+E
Sbjct: 335 EEDDDDDLEEEEEDVDLSDEEEDEEDE 361
Score = 30.0 bits (68), Expect = 1.9
Identities = 10/27 (37%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E++++ EEE+E+ + +EEE+E++E+
Sbjct: 336 EDDDDDLEEEEEDVDLSDEEEDEEDED 362
Score = 30.0 bits (68), Expect = 2.2
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+EE+ +E+E++++++ EEEEE+ +
Sbjct: 325 EEEDGVDDEDEEDDDDDLEEEEEDVDLSD 353
Score = 30.0 bits (68), Expect = 2.3
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++E EE++ ++ EEEEE+ + +EE
Sbjct: 328 DGVDDEDEEDDDDDLEEEEEDVDLSDEE 355
Score = 30.0 bits (68), Expect = 2.4
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E+EE ++++ EEEEE+ + +E+E+E
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDE 358
Score = 29.6 bits (67), Expect = 3.0
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 10/47 (21%)
Query: 29 DKRVK---KIKMKEEEEEKEEEEQEEEEEE-------EEEEEEQEEE 65
D+R + + K +EE ++E E ++ E E EEE++E+EE+
Sbjct: 248 DRRAQPTDRTKTEEELAKEEAERLKKLEAERLRRMRGEEEDDEEEED 294
Score = 29.2 bits (66), Expect = 3.9
Identities = 9/28 (32%), Positives = 22/28 (78%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++E+E+++++ EEEEE+ + ++EE+
Sbjct: 330 VDDEDEEDDDDDLEEEEEDVDLSDEEED 357
Score = 28.4 bits (64), Expect = 5.5
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
DD+ + EE+E+EEE+ ++E+EE +++
Sbjct: 303 DDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDD 340
Score = 28.4 bits (64), Expect = 5.7
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 9/39 (23%)
Query: 36 KMKEEEEEKEEEEQE---------EEEEEEEEEEEQEEE 65
KEE E ++ E E E++EEEE+ +E ++
Sbjct: 263 LAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADD 301
Score = 28.4 bits (64), Expect = 6.0
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++++ + EE+EEEEE+ + E+E
Sbjct: 308 PDDDDNFGLGQGEEDEEEEEDGVDDEDEE 336
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 37.0 bits (86), Expect = 0.013
Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 44 KEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRASILLIN 90
EEE+EEEEEEEEEEE E +P E+ L S I+L N
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAP---EMQLPASGGIKIILKN 446
Score = 35.4 bits (82), Expect = 0.032
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEF 66
EE+EEEE+EEEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPA 429
Score = 35.4 bits (82), Expect = 0.035
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQE 63
EEEE+EEEE+EEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMP 428
Score = 34.3 bits (79), Expect = 0.076
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
EEE+EEEE+EEEEEE E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMP 428
Score = 34.3 bits (79), Expect = 0.092
Identities = 14/23 (60%), Positives = 17/23 (73%)
Query: 43 EKEEEEQEEEEEEEEEEEEQEEE 65
E+ E+EEEEEEEEEEEE+
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVA 422
Score = 33.9 bits (78), Expect = 0.10
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEE 58
V++ +EEEEE+EEEE+EEE E
Sbjct: 399 VERWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 29.3 bits (66), Expect = 3.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQE 63
EEEEE+EEEE+EE E E
Sbjct: 407 EEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 28.5 bits (64), Expect = 5.5
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEEEF 66
+EKE E EEEEEEE+EEE
Sbjct: 392 KEKEHPVVERWAAEEEEEEEEEEEE 416
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 35.4 bits (82), Expect = 0.013
Identities = 8/31 (25%), Positives = 9/31 (29%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
KK K E E E EE+
Sbjct: 125 KKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 33.9 bits (78), Expect = 0.044
Identities = 8/30 (26%), Positives = 9/30 (30%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K K+ E E E EEE
Sbjct: 125 KKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
Score = 31.2 bits (71), Expect = 0.38
Identities = 7/32 (21%), Positives = 8/32 (25%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
K K E E E E+E
Sbjct: 124 PKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 30.8 bits (70), Expect = 0.54
Identities = 6/31 (19%), Positives = 8/31 (25%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
K+ K E + EEE
Sbjct: 125 KKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 27.7 bits (62), Expect = 5.3
Identities = 6/30 (20%), Positives = 7/30 (23%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEE 58
K+ E E EEE
Sbjct: 126 KKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 27.7 bits (62), Expect = 5.6
Identities = 4/33 (12%), Positives = 8/33 (24%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +++K E E E
Sbjct: 117 PTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAA 149
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 36.4 bits (84), Expect = 0.015
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
DD+ ++++ E+ EE+E EE EE+EEEE EEE +E E +P+
Sbjct: 66 DDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPE 110
Score = 31.3 bits (71), Expect = 0.64
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
DD E++E + E E+ EEEE EE +E+E
Sbjct: 54 DDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDE 91
Score = 29.8 bits (67), Expect = 1.7
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E++E E + E+ EEEE EE EE+
Sbjct: 64 GEDDEGRIEVRISEDGEEEEVEEGEEDE 91
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The
domain is found in the primary vegetative sigma factor.
The function of this domain is unclear and can be
removed without loss of function.
Length = 211
Score = 36.0 bits (84), Expect = 0.015
Identities = 8/28 (28%), Positives = 23/28 (82%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E +E++ E+ ++++E+E+E++E+E +
Sbjct: 45 ESELDEEDLEDDDDDDEDEDEDDEEEAD 72
Score = 35.2 bits (82), Expect = 0.025
Identities = 10/31 (32%), Positives = 24/31 (77%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
I+ + +EE+ E+++ ++E+E+E++EEE +
Sbjct: 44 IESELDEEDLEDDDDDDEDEDEDDEEEADLG 74
Score = 34.5 bits (80), Expect = 0.045
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E +EE+ E++++++E+E+E +EE
Sbjct: 43 AIESELDEEDLEDDDDDDEDEDEDDEE 69
Score = 32.5 bits (75), Expect = 0.18
Identities = 5/27 (18%), Positives = 19/27 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E ++E+ E++++++E+++E+
Sbjct: 40 TAAAIESELDEEDLEDDDDDDEDEDED 66
Score = 32.2 bits (74), Expect = 0.28
Identities = 8/27 (29%), Positives = 20/27 (74%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+EE+ +++++ +E+E+E++EEE
Sbjct: 49 DEEDLEDDDDDDEDEDEDDEEEADLGP 75
Score = 31.8 bits (73), Expect = 0.31
Identities = 8/39 (20%), Positives = 22/39 (56%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+D E + +EE E++++++E+E++++E
Sbjct: 30 IDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDE 68
Score = 29.8 bits (68), Expect = 1.2
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ E++ +++E E+E++EEE + + E
Sbjct: 51 EDLEDDDDDDEDEDEDDEEEADLGPDPE 78
Score = 28.3 bits (64), Expect = 4.8
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+++ ++E+++E++EEE + EE
Sbjct: 52 DLEDDDDDDEDEDEDDEEEADLGPDPEE 79
>gnl|CDD|151173 pfam10669, Phage_Gp23, Protein gp23 (Bacteriophage A118). This
is the highly conserved family of the major tail
subunit protein.
Length = 121
Score = 34.7 bits (79), Expect = 0.016
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
DD ++ +++MKEE ++ E E ++ ++E +EE ++
Sbjct: 39 DDSKIVRVEMKEERDKMETEREKRDKESKEERDK 72
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 36.2 bits (84), Expect = 0.017
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++K K KE+ +E+ EE EEE EEEE E ++E+
Sbjct: 136 EEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKA 174
Score = 35.4 bits (82), Expect = 0.028
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 12 GGVVSISSSQCHRVVV-DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
G + + S + +D+ K K+ +E+ +EE EE+EEE EEEE E E
Sbjct: 116 GEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAE 170
Score = 34.2 bits (79), Expect = 0.069
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K KEEE +K+E EQ E +++++EEE+ E
Sbjct: 77 KWKEEERKKKEAEQGLESDDDDDEEEEWEV 106
Score = 33.1 bits (76), Expect = 0.18
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
D+ KK K +EE EE+E+E EEEE E E+
Sbjct: 137 EKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEK 171
Score = 31.5 bits (72), Expect = 0.54
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K K E+ E ++++ EEEE E EE+E+ ++E
Sbjct: 83 RKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDE 115
Score = 31.2 bits (71), Expect = 0.74
Identities = 13/39 (33%), Positives = 26/39 (66%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+++R KK + E + +++E+EE E EE+E+ + E E+
Sbjct: 80 EEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEW 118
Score = 30.8 bits (70), Expect = 0.89
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
++E K+ +E +EE EE+EEE EE ++ K
Sbjct: 138 KDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEK 171
Score = 30.4 bits (69), Expect = 1.1
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
D+ K + +EE +E+EE+ EEEE E E+E+
Sbjct: 137 EKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Score = 30.0 bits (68), Expect = 1.4
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
K+ K+ +E EE EEE EEEE E E+E+ E
Sbjct: 141 AAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASE 176
Score = 30.0 bits (68), Expect = 1.6
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K ++ K + E+ + +++ +EEEE E EE+E ++
Sbjct: 77 KWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDD 114
Score = 29.6 bits (67), Expect = 2.2
Identities = 10/29 (34%), Positives = 22/29 (75%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K +EEE++++E E+ E +++++E+EE
Sbjct: 76 EKWKEEERKKKEAEQGLESDDDDDEEEEW 104
Score = 29.2 bits (66), Expect = 2.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ ++E E + E ++E E + E EEE
Sbjct: 111 DSDDEGEWIDVESDKEIESSDSEDEEE 137
Score = 29.2 bits (66), Expect = 2.9
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
E ++E E + E+EEE++E ++ +E+ +
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEE 152
Score = 29.2 bits (66), Expect = 3.1
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +++ +EEE+ E EE+E+ ++E E
Sbjct: 93 ESDDDDDEEEEWEVEEDEDSDDEGEWI 119
Score = 27.7 bits (62), Expect = 9.4
Identities = 8/38 (21%), Positives = 23/38 (60%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D + I ++ ++E + + ++EEE++E ++ +E+
Sbjct: 112 SDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDS 149
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 35.5 bits (82), Expect = 0.021
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
D K + +E E +EE++ +EE+ E EE E+EE
Sbjct: 7 DAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEE 43
Score = 33.2 bits (76), Expect = 0.12
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++ K+ + KEE++ KEE+ + EE E+EE E+ EE
Sbjct: 13 MEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEES 51
Score = 33.2 bits (76), Expect = 0.13
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
KEE+ E EE E+EE E+ EE E + E L+
Sbjct: 30 KEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLK 67
Score = 31.6 bits (72), Expect = 0.38
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+D ++I+ +E E+ EE + + EE ++E + +EE
Sbjct: 32 EDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEE 69
Score = 30.1 bits (68), Expect = 1.1
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E EE +E E +EE++ +EE+ E E
Sbjct: 8 AKHENMEEDCCKENENKEEDKGKEEDLEFE 37
Score = 30.1 bits (68), Expect = 1.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+DK ++ EE E++E E EE E + EE ++E
Sbjct: 24 KEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62
Score = 29.7 bits (67), Expect = 1.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KE ++ K E +E+ +E E +EE + +
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGK 30
Score = 29.3 bits (66), Expect = 1.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ K+ + E EE+ +E E +EE++ +EE+
Sbjct: 4 ECKDAKHENMEEDCCKENENKEEDKGKEED 33
Score = 28.6 bits (64), Expect = 3.4
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
M++E ++ + E EE+ +E E +E+++
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKG 29
Score = 27.8 bits (62), Expect = 6.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
E+EE E+ +E E + EE +++ + ++ K
Sbjct: 39 IEKEEIIEDSEESNEVKIEELKDENNKLKEENKK 72
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 34.5 bits (80), Expect = 0.021
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KM EE+ + E E+ E+E EE E E E
Sbjct: 40 KMSAEEKAEYELEKLEKELEELEAELARRE 69
Score = 32.6 bits (75), Expect = 0.098
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 9/46 (19%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQE--------EEEEEEEEEEEQEEEF 66
DK + K K + E+++EE++ E EE+ E E E+ E+E
Sbjct: 14 DKAIAKEK-AKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKEL 58
Score = 29.5 bits (67), Expect = 1.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 7/44 (15%)
Query: 29 DKRVKKIKMKEEEEEKEEE-------EQEEEEEEEEEEEEQEEE 65
K K + K+EE++ E E E++ E E E+ E+E EE
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEEL 61
Score = 28.8 bits (65), Expect = 1.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K+ EE+ E E ++ E+E EE E E
Sbjct: 36 EKLAKMSAEEKAEYELEKLEKELEELEAELARR 68
Score = 28.4 bits (64), Expect = 2.3
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+++ K+ +E+ E + E+ ++E EE E E +E
Sbjct: 36 EKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 35.0 bits (81), Expect = 0.025
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
K+ K +E + E+ EE ++ EEEE EEEE +EE +
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEE 40
Score = 32.3 bits (74), Expect = 0.18
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
++ ++ + E+ EE+E EE+E EEE E EEE+QE
Sbjct: 8 TEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQE 44
Score = 31.9 bits (73), Expect = 0.31
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ K EEEE EEEE EEE E EEE++E E
Sbjct: 16 TEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
Score = 31.5 bits (72), Expect = 0.37
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EE E+ EEEE EEEE EEE E E+E++
Sbjct: 14 EETEEAEKSEEEEAEEEEPEEENELEEEQQ 43
Score = 30.8 bits (70), Expect = 0.62
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
M ++E++ EE + EE EE E+ EEE+ EE
Sbjct: 1 MSDKEQKTEEPDAEETEEAEKSEEEEAEE 29
Score = 30.8 bits (70), Expect = 0.62
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
D + ++ + EEEE +EEE +EE E EEE++E E
Sbjct: 11 PDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
Score = 30.8 bits (70), Expect = 0.73
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
DK K + EE E+ E+ +EEE EEEE EEE E E
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELE 39
Score = 29.6 bits (67), Expect = 1.7
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 13 GVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
+ + ++ + + EEEE +EE E EEE++E E E Q EE K
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDK 58
Score = 28.4 bits (64), Expect = 3.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
++E+K EE EE EE E+ EE+E E + Q
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQ 42
Score = 27.7 bits (62), Expect = 6.7
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ + + EEE E EEE+QE E E + EE +++
Sbjct: 24 EEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYL 60
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 35.1 bits (81), Expect = 0.025
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
D ++ + +E EEE EE E E+E EE+ E E+ T
Sbjct: 83 DAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNP 125
Score = 34.3 bits (79), Expect = 0.046
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
DK + + +E EEE EEE++E +E E+E EE+ E
Sbjct: 80 DKGDAEKEDEESEEENEEEDEESSDENEKETEEKTES 116
Score = 31.6 bits (72), Expect = 0.33
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + + E+E+E+ EEE EEE+EE +E E+E E
Sbjct: 74 NSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETE 111
Score = 30.9 bits (70), Expect = 0.68
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + K ++E+EE EEE +EE+EE +E E++ EE
Sbjct: 75 SEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEE 112
Score = 30.9 bits (70), Expect = 0.70
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 6/50 (12%)
Query: 27 VDDKRVKKIKMKEEEE------EKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
DD+ +I+ +EEE E +E++ + E+E+EE EEE EEE S
Sbjct: 54 SDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESS 103
Score = 30.5 bits (69), Expect = 1.0
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
KE++ + E+E++E EEE EEE+EE +E ++ +
Sbjct: 78 KEDKGDAEKEDEESEEENEEEDEESSDENEKETEE 112
Score = 30.1 bits (68), Expect = 1.3
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 29 DKRVKKIKMKEEEEEKEEE-------EQEEEEEEEEEEEEQEEE 65
K+ + E EE KEEE ++E++ + E+E+EE EEE
Sbjct: 51 AKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94
Score = 29.3 bits (66), Expect = 2.3
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 11 LGGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + SS + D++ KK +++E E EE +EEE+E E++E++
Sbjct: 30 VAYQLFFPSSPSDQAAADEQEAKK---SDDQETAEIEEVKEEEKEAANSEDKEDK 81
Score = 28.2 bits (63), Expect = 5.7
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+++E++ + E+++EE EEE EEE++E
Sbjct: 76 EDKEDKGDAEKEDEESEEENEEEDEESSD 104
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 35.1 bits (81), Expect = 0.026
Identities = 6/38 (15%), Positives = 28/38 (73%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K K K +++++K++++++++++++ E+++++E
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEA 118
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 35.1 bits (81), Expect = 0.027
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ K KK K K EEEK+ E +++ EE E + + EE
Sbjct: 61 KPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEE 102
Score = 35.1 bits (81), Expect = 0.029
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
R K K K++++EK EE+++ E ++++ EE E
Sbjct: 55 RPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENE 94
Score = 31.3 bits (71), Expect = 0.41
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
KK K K++E+ EEE++ E ++++ EE E + + +S
Sbjct: 65 TKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGD 105
>gnl|CDD|225029 COG2118, COG2118, DNA-binding protein [General function
prediction only].
Length = 116
Score = 33.9 bits (78), Expect = 0.028
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
DD+ +++I+ ++ E + + + EE+ E +EE+ QEEE
Sbjct: 2 DDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEE 39
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 35.8 bits (83), Expect = 0.028
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 12/48 (25%)
Query: 30 KRVKKIK------------MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KR+KKIK +KEE +E EE + + E EE E+ E
Sbjct: 221 KRIKKIKSKKYHRVHKKEKLKEELKEFEELVKADPEAALEELEKLERR 268
Score = 34.3 bits (79), Expect = 0.11
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
M+ E K+EE E EE E E +EE
Sbjct: 379 MQRAEARKKEENDAEIEELRRELEGEEES 407
Score = 33.1 bits (76), Expect = 0.19
Identities = 12/32 (37%), Positives = 24/32 (75%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+KI+ K EE E+E+ + EEE+E+++E+ ++
Sbjct: 316 RKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDD 347
Score = 32.0 bits (73), Expect = 0.49
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K +++ + +++EE E E+ E E EEE ++EE
Sbjct: 377 KFMQRAEARKKEENDAEIEELRRELEGEEESDEEEN 412
Score = 29.3 bits (66), Expect = 3.0
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+EE + E EE E E EEE +E+E E
Sbjct: 384 ARKKEENDAEIEELRRELEGEEESDEEENE 413
Score = 28.5 bits (64), Expect = 5.7
Identities = 10/33 (30%), Positives = 24/33 (72%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++++ K E + EE+++E+ + EEE+E+ +E+
Sbjct: 312 EELRRKIEGKSVSEEDEDEDSDSEEEDEDDDED 344
Score = 28.5 bits (64), Expect = 6.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
E EE E + EEE +EEE EE +
Sbjct: 391 DAEIEELRRELEGEEESDEEENEEPSK 417
Score = 28.1 bits (63), Expect = 8.8
Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R + K+ + K+ ++E + E +E++E +EEEE E EEE
Sbjct: 423 RKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEE 464
Score = 28.1 bits (63), Expect = 8.8
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K KE + E +E+++ +EEEE E+EEE + E
Sbjct: 437 KKLKKENKNEFKEKKESDEEEELEDEEEAKVE 468
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called
The RES complex, pre-mRNA retention and splicing
complex. Subunits of this complex are not essential for
viability of yeasts but they are required for efficient
splicing in vitro and in vivo. Furthermore,
inactivation of this complex causes pre-mRNA leakage
from the nucleus. Bud13 contains a unique,
phylogenetically conserved C-terminal region of unknown
function.
Length = 141
Score = 34.2 bits (79), Expect = 0.029
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEE--------QEEEEEEEEEEEEQEEE 65
+ +++KR +K + KEE+E KEE+E Q+EE E+ EE E+ +
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKN 60
Score = 34.2 bits (79), Expect = 0.029
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
V DK + I EE++EE+E+E+EE+E +EE+E+E
Sbjct: 2 TVYRDKSGRIID---IEEKREEKEREKEEKERKEEKEKE 37
Score = 29.2 bits (66), Expect = 1.6
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 46 EEEQEEEEEEEEEEEEQEEEF 66
EE++EE+E E+EE+E +EE+
Sbjct: 15 EEKREEKEREKEEKERKEEKE 35
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 35.3 bits (82), Expect = 0.029
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
+K ++ + K E E E+E E+++EEE+ E +E Y + K L ++
Sbjct: 203 EKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKME 253
Score = 31.9 bits (73), Expect = 0.39
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
K+ ++ E + E E E+E E+++EE++
Sbjct: 202 KEKAIEAERAKAEAAEAEQELLREKQKEEEQ 232
Score = 29.9 bits (68), Expect = 1.7
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
D K K E E K E + E+E E+++E+E+
Sbjct: 196 DQALTAKEKAIEAERAKAEAAEAEQELLREKQKEEEQ 232
Score = 28.8 bits (65), Expect = 3.7
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K K E E+ + E E E+E E+++EEE
Sbjct: 202 KEKAIEAERAKAEAAEAEQELLREKQKEEE 231
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 35.6 bits (82), Expect = 0.030
Identities = 7/43 (16%), Positives = 26/43 (60%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + +R+K+++ + ++++++ EE ++ +++Q EE
Sbjct: 94 QKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEE 136
Score = 35.6 bits (82), Expect = 0.032
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQE 63
EE+ +K+E++Q EE ++++ E++
Sbjct: 77 AEEQRKKKEQQQAEELQQKQAAEQER 102
Score = 34.8 bits (80), Expect = 0.053
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 30 KRVKKIKMKEEE-EEKEEEEQEEEEEEEEEEEEQEEE 65
+R KK + + EE ++K+ EQE ++ E+E +E+
Sbjct: 80 QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQ 116
Score = 34.8 bits (80), Expect = 0.055
Identities = 9/37 (24%), Positives = 24/37 (64%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + + K++E+++ EE Q+++ E+E ++ E+E
Sbjct: 73 SAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKE 109
Score = 33.6 bits (77), Expect = 0.14
Identities = 10/38 (26%), Positives = 25/38 (65%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KR ++ + K+E+++ EE +Q++ E+E ++ ++E
Sbjct: 73 SAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKER 110
Score = 30.5 bits (69), Expect = 1.1
Identities = 8/37 (21%), Positives = 23/37 (62%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++ KK + ++ EE ++++ E+E ++ E+E +
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQ 114
Score = 30.5 bits (69), Expect = 1.2
Identities = 5/33 (15%), Positives = 20/33 (60%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++ +E++++ EE ++ ++++ EE +
Sbjct: 109 ERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKA 141
Score = 29.0 bits (65), Expect = 3.6
Identities = 7/38 (18%), Positives = 22/38 (57%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ + K+ +E ++ E+E +E++++ EE ++
Sbjct: 90 EELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQA 127
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 35.2 bits (81), Expect = 0.034
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQE 63
EE+E KE+EE+EE EEEEEEE+E E
Sbjct: 261 EEKELKEDEEEEETEEEEEEEDEDE 285
Score = 34.0 bits (78), Expect = 0.077
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ + EE+E +E+EEEEE EEE+EEE
Sbjct: 255 QDGDYVEEKELKEDEEEEETEEEEEEE 281
Score = 33.3 bits (76), Expect = 0.14
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
DD+ ++ KE +E++EEEE EEEEEEE+E+E
Sbjct: 253 DDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 32.9 bits (75), Expect = 0.17
Identities = 17/28 (60%), Positives = 22/28 (78%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EEKE +E EEEEE EEEEEE++E+
Sbjct: 257 GDYVEEKELKEDEEEEETEEEEEEEDED 284
Score = 32.9 bits (75), Expect = 0.18
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E++E +++EEEEE EEEEE+E+E
Sbjct: 255 QDGDYVEEKELKEDEEEEETEEEEEEEDE 283
Score = 32.9 bits (75), Expect = 0.18
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
DD+ EE++ +E++EEEE EEEEEEE E+E
Sbjct: 248 DDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 31.3 bits (71), Expect = 0.61
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
VK K +EE++ ++ + EE+E +E+EEE+E E
Sbjct: 239 GSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETE 275
Score = 30.9 bits (70), Expect = 0.85
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEE 57
D V++ ++KE+EEE+E EE+EEEE+E+E
Sbjct: 255 QDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 29.8 bits (67), Expect = 2.1
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
K ++EE ++++ + EE+E +E+E+EEE
Sbjct: 246 KSDDEEDDDQDGDYVEEKELKEDEEEEET 274
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation
factor 3 (eIF3). In yeast it is called Hcr1. The
Saccharomyces cerevisiae protein eIF3j (HCR1) has been
shown to be required for processing of 20S pre-rRNA and
binds to 18S rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 35.0 bits (81), Expect = 0.035
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K +K K EE+EK + E+EE+ E EE+ E+E
Sbjct: 60 KALKAKIEEKEKAKREKEEKGLRELEEDTPEDE 92
Score = 34.6 bits (80), Expect = 0.051
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KI+ KE+ + ++EE+ E EE+ E+E E+
Sbjct: 64 AKIEEKEKAKREKEEKGLRELEEDTPEDELAEK 96
Score = 33.5 bits (77), Expect = 0.12
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
K K K K+ + K EE+++ + E+EE+ + EE + +L L+
Sbjct: 51 KVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLR 100
Score = 31.6 bits (72), Expect = 0.48
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+E++ ++ +EEE+EE+EEE+ +
Sbjct: 27 EDEDDDVKDSWDEEEDEEKEEEKAKVA 53
Score = 30.4 bits (69), Expect = 1.0
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ K+ K ++ E EE+ E+E E+ + +EE
Sbjct: 70 EKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
Score = 29.2 bits (66), Expect = 2.2
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ K + KEE+ +E EE E+E E+ ++ +
Sbjct: 68 EKEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQ 103
Score = 28.5 bits (64), Expect = 4.2
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
K V K K +E+E+ + ++ +EEE+EE+EEE+ + K
Sbjct: 12 PAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAK 59
Score = 28.1 bits (63), Expect = 5.3
Identities = 10/40 (25%), Positives = 25/40 (62%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K K ++E+++++ ++ +EEE+EE+E+E+
Sbjct: 11 PPAPPAKAVVKDKWDDEDEDDDVKDSWDEEEDEEKEEEKA 50
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 35.0 bits (80), Expect = 0.036
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 10 ALGGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+LGG V + + + + + K + ++ + EE++ +EEQEEEE EEE ++E+ +
Sbjct: 185 SLGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQ 239
Score = 32.7 bits (74), Expect = 0.20
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E + +E++ QEE+EEEE EEE ++EE
Sbjct: 211 QEHKTEEKQPQEEQEEEEVEEEAKQEE 237
Score = 31.6 bits (71), Expect = 0.44
Identities = 11/30 (36%), Positives = 23/30 (76%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K +E++ ++E+EE+E EEE ++EE + ++
Sbjct: 214 KTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 30.4 bits (68), Expect = 1.2
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ K++ +E + EE++ +EE+EEEE EEE ++E
Sbjct: 203 LSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQE 236
Score = 30.0 bits (67), Expect = 1.5
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
K + K+ +EE+EEEE EEE ++EE + +
Sbjct: 214 KTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 29.6 bits (66), Expect = 1.7
Identities = 16/42 (38%), Positives = 26/42 (61%), Gaps = 6/42 (14%)
Query: 31 RVKKIKMKEE------EEEKEEEEQEEEEEEEEEEEEQEEEF 66
+VK K K+E +E +E + EE++ +EE+EEE+ EE
Sbjct: 191 QVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEE 232
Score = 28.9 bits (64), Expect = 3.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEE 59
K +K +E+EEE+ EEE ++EE + ++
Sbjct: 214 KTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 28.5 bits (63), Expect = 4.1
Identities = 14/46 (30%), Positives = 27/46 (58%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
V V + K+ ++ + +E +E + EE++ +EE+EE+E E K
Sbjct: 189 SVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAK 234
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 35.1 bits (82), Expect = 0.036
Identities = 19/30 (63%), Positives = 22/30 (73%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EEE+EE E+EEEEEEEEE EE E E
Sbjct: 229 LAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 34.4 bits (80), Expect = 0.057
Identities = 18/33 (54%), Positives = 25/33 (75%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ ++ E EE+EEE +EEEEEEEEEE E+ E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 32.4 bits (75), Expect = 0.25
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
+ +EEEEE EEEE+EEEEEE EE E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEA 257
Score = 32.1 bits (74), Expect = 0.29
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+++ ++ + + EEEEE+ EEE+EEEEEEE EE E E
Sbjct: 221 ILEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that may
be functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 33.1 bits (76), Expect = 0.038
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
IK +E E++++E E E+++E +E++ E++
Sbjct: 76 IKQAAKEPEEDDKEDESEDDDESDEDDDEDD 106
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or
more acidic residues. The function of members of this
family is unknown.
Length = 104
Score = 33.1 bits (76), Expect = 0.048
Identities = 6/41 (14%), Positives = 24/41 (58%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V + + + E+ K++E++E+E++ ++++ +++
Sbjct: 36 VPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDD 76
Score = 32.7 bits (75), Expect = 0.052
Identities = 6/36 (16%), Positives = 22/36 (61%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K E+ +K+E+E++E++ +++++ +++
Sbjct: 42 KSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDD 77
Score = 31.9 bits (73), Expect = 0.098
Identities = 6/41 (14%), Positives = 22/41 (53%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
V + K + E+ +++++EE+E++ ++ +++
Sbjct: 35 EVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDD 75
Score = 30.7 bits (70), Expect = 0.32
Identities = 8/49 (16%), Positives = 25/49 (51%)
Query: 17 ISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
I +C V + + + E+ +++E EE+E++ +++ +++
Sbjct: 27 IVCPKCGEEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDD 75
Score = 30.0 bits (68), Expect = 0.51
Identities = 5/36 (13%), Positives = 21/36 (58%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R ++ ++ E+EE E++ ++++++ +++
Sbjct: 43 SRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDD 78
Score = 29.6 bits (67), Expect = 0.62
Identities = 9/55 (16%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 12 GGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
G V ++ D + K K+E+EE E++ +++++++++++ +
Sbjct: 33 GEEVPPEVAKSRAPAADAEDAAK---KDEDEEDEDDVVLDDDDDDDDDDDLPDLD 84
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for
centrosome separation and maintenance of spindle
bi-polarity. TPX2 is a microtubule-associated protein
that mediates the binding of the C-terminal domain of
Xklp2 to microtubules. It is phosphorylated during
mitosis in a microtubule-dependent way.
Length = 57
Score = 31.6 bits (72), Expect = 0.049
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
KK++ KE+ E E+EE E ++EEEEE
Sbjct: 15 KKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 31.6 bits (72), Expect = 0.063
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 29 DKRVKKIK---MKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
D+R +K K EE+EK E ++EE E ++EEE+E
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 30.4 bits (69), Expect = 0.14
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 29 DKRVK-KIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
DK+++ K K E E+E+ E Q+EEEEE ++ +E
Sbjct: 14 DKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLRKE 49
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 33.6 bits (77), Expect = 0.049
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 45 EEEEQEEEEEEEEEEEEQE 63
QEEEEEEEE E++Q+
Sbjct: 92 GHTRQEEEEEEEENEKQQQ 110
Score = 32.9 bits (75), Expect = 0.072
Identities = 11/30 (36%), Positives = 22/30 (73%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+EEEEE+EE E++++ +E + ++ Q+ E
Sbjct: 94 TRQEEEEEEEENEKQQQSDEAQVQQHQQHE 123
Score = 32.1 bits (73), Expect = 0.16
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 46 EEEQEEEEEEEEEEEEQEE 64
++EEEEEEEE E+Q++
Sbjct: 92 GHTRQEEEEEEEENEKQQQ 110
Score = 31.3 bits (71), Expect = 0.29
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEEE 65
+EE+EEEEE E++++ E +
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQ 115
Score = 30.2 bits (68), Expect = 0.75
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQ 62
++EEEE+EE E++++ +E Q
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQ 115
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 34.9 bits (80), Expect = 0.051
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V +K+ + +E +E+ E+E E +E EE E E
Sbjct: 334 VVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELL 372
Score = 31.8 bits (72), Expect = 0.42
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
V+ ++ +E + EE EE E+E E +E EE
Sbjct: 332 VEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEME 370
Score = 30.3 bits (68), Expect = 1.3
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCL 74
EE EE E E E +E EE E E L
Sbjct: 345 EESTDEESEDEVEIDESVIEEVAEMELLEVQVDDL 379
Score = 29.9 bits (67), Expect = 1.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
E EK+E + EE +EE E++ E + + E+ L
Sbjct: 333 EVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELL 372
Score = 29.1 bits (65), Expect = 3.5
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
E++E + +E +EE E+E E +E + + L +Q
Sbjct: 336 EKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQ 375
Score = 28.4 bits (63), Expect = 6.5
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
V + + ++E E E +E E E E + +
Sbjct: 340 GDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQVDD 378
Score = 28.0 bits (62), Expect = 7.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
E+E E +E EE E E E + ++
Sbjct: 353 EDEVEIDESVIEEVAEMELLEVQVDD 378
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 34.3 bits (79), Expect = 0.054
Identities = 13/46 (28%), Positives = 32/46 (69%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
+ + + +KK+K ++++ E+E +Q ++++EEEE +++ EE + K
Sbjct: 181 KKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQK 226
Score = 29.3 bits (66), Expect = 2.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
KK++ EE++K+E E+E EE E + +E
Sbjct: 102 KKLQKLLEEKQKQEREKEREEAELRQRLAKE 132
Score = 28.9 bits (65), Expect = 2.9
Identities = 12/42 (28%), Positives = 29/42 (69%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R V ++ K+++ E ++ K+++++ EEE ++ +++QEEE
Sbjct: 173 RNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEE 214
Score = 28.9 bits (65), Expect = 3.5
Identities = 12/38 (31%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 34 KIKMKEEEEEK-EEEEQEEEEEEEEEEEEQEEEFYTKS 70
K +++E E +K ++++Q+ EEE ++ ++Q+EE K
Sbjct: 181 KKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQ 218
Score = 28.9 bits (65), Expect = 3.6
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
++ K+++ EEK+++E+E+E EE E + +E Y
Sbjct: 98 AQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKY 134
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 32.4 bits (74), Expect = 0.054
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D + KK K K++ + KEE E+EEEE+ E +E
Sbjct: 15 KKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKE 54
Score = 30.5 bits (69), Expect = 0.26
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+ V K+ KK K + +EE E++EEE+ E + ++ EE
Sbjct: 17 IDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGEEDEDNEKI 64
Score = 28.2 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ K+ KK K K + +E+ E+EEEE+ E + +E E
Sbjct: 16 KIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEGE 56
Score = 27.0 bits (60), Expect = 5.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+D K+ KK K K+ + ++E ++EEEE+ E + +E
Sbjct: 15 KKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEG 55
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 34.0 bits (78), Expect = 0.057
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 18 SSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+S + K KK K K++E+E+ E EE + EE EE +++ + PK
Sbjct: 50 TSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPK 104
Score = 33.6 bits (77), Expect = 0.085
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
K K K+E+EE E EE + EE EE ++ Y
Sbjct: 65 KKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKV 105
Score = 31.7 bits (72), Expect = 0.31
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKC 73
K KK K KEE E EE + EE EE +++ + E
Sbjct: 66 KTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTA 109
Score = 30.5 bits (69), Expect = 0.71
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
K+ KK K ++EE + E+ + EE EE +++ + K
Sbjct: 65 KKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKV 105
Score = 28.2 bits (63), Expect = 4.5
Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 26 VVDDKRVKKIKMKEEEEE-KEEEEQEEEEEEEEEEEEQEEEFYTKSPKC 73
K+ KK K + E +E + EE EE +++ + + + + +
Sbjct: 64 TKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEV 112
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 34.7 bits (79), Expect = 0.059
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
DK ++ +++ E KEE + + +E EE+EE +E
Sbjct: 292 GDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDE 328
Score = 32.4 bits (73), Expect = 0.32
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + ++ + E E +EE Q + +E EE+E+++E
Sbjct: 291 EGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDE 328
Score = 32.4 bits (73), Expect = 0.32
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KEE + +E EE+EE++E EE E
Sbjct: 308 KEEVQSDRPDEIGEEKEEDDENEENERH 335
Score = 32.0 bits (72), Expect = 0.38
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
K + + + +E +E+EE++E EE E+ E LE ++
Sbjct: 308 KEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIE 351
Score = 30.8 bits (69), Expect = 0.92
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ +EE + + +E EE+EE++E EE
Sbjct: 305 EAHKEEVQSDRPDEIGEEKEEDDENEE 331
Score = 30.8 bits (69), Expect = 0.99
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +E+ + ++ +E EE+EE+++ EE
Sbjct: 305 EAHKEEVQSDRPDEIGEEKEEDDENEE 331
Score = 29.3 bits (65), Expect = 2.9
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ K+ + +E E + +E+ + + +E EE+EE+
Sbjct: 290 SEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEED 326
Score = 27.7 bits (61), Expect = 9.1
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K V + ++++EE E E +EE + + +E EE
Sbjct: 286 NKEVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEE 322
Score = 27.7 bits (61), Expect = 9.2
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 20 SQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
Q V + ++++ +E EE+E+++E EE E E + + K +E
Sbjct: 296 QQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIE 351
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial ribosomes,
L7/L12 homodimers bind the extended C-terminal helix of
L10 to anchor the L7/L12 molecules to the ribosome.
Eukaryotic P1/P2 heterodimers and archaeal L12p
homodimers are believed to bind the L10 equivalent
proteins, eukaryotic P0 and archaeal L10e, in a similar
fashion. P1 and P2 (L12p, L7/L12) are the only proteins
in the ribosome to occur as multimers, always appearing
as sets of dimers. Recent data indicate that most
archaeal species contain six copies of L12p (three
homodimers), while eukaryotes have two copies each of P1
and P2 (two heterodimers). Bacteria may have four or six
copies (two or three homodimers), depending on the
species. As in bacteria, the stalk is crucial for
binding of initiation, elongation, and release factors
in eukaryotes and archaea.
Length = 105
Score = 32.6 bits (74), Expect = 0.066
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEE 60
E EK EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 30.3 bits (68), Expect = 0.44
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 45 EEEEQEEEEEEEEEEEEQEEEF 66
E ++ EE +EEEEEE++E+F
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 30.3 bits (68), Expect = 0.47
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 41 EEEKEEEEQEEEEEEEEEEEE 61
E E+ E+ +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDED 99
Score = 29.5 bits (66), Expect = 0.88
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEE 61
E ++ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 28.8 bits (64), Expect = 1.7
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 43 EKEEEEQEEEEEEEEEEEEQEEEF 66
+ E+ EE +EEEEEEE+++ F
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDFGF 102
Score = 28.0 bits (62), Expect = 2.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQE 63
E E+ +E +EEEEEEE+E
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 26.5 bits (58), Expect = 8.3
Identities = 9/17 (52%), Positives = 14/17 (82%)
Query: 38 KEEEEEKEEEEQEEEEE 54
K EE ++EEEE+E+E+
Sbjct: 84 KAEEAKEEEEEEEDEDF 100
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 34.8 bits (80), Expect = 0.068
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 9/56 (16%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQE---EEFYTKS------PKCLELMLQCSPRAS 85
E E EEE E ++ + ++ EE + EE + L + R
Sbjct: 280 PEPPEPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDNILATLQTVQRRRG 335
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 33.4 bits (77), Expect = 0.069
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V VD+ + +++E EE+KEEEE + EE E +++E E
Sbjct: 133 VEVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAE 173
Score = 28.1 bits (63), Expect = 4.4
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
KI ++ +E+E EEE EE EE++EEEE + E ++ K
Sbjct: 130 KIDVEVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALK 168
Score = 27.3 bits (61), Expect = 9.6
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEE--EEEEEEQEE 64
D V + + EEE E+ EE++EEEE + EE E ++
Sbjct: 132 DVEVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKK 169
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 33.1 bits (76), Expect = 0.071
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
K K+ +K EEE ++EE E E+ E+ E+++ E F
Sbjct: 70 KERKEA-LKLLEEENDDEEDAETEDTEDVEDDEWEGF 105
Score = 30.8 bits (70), Expect = 0.41
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
K++K+ K + E+E +++E+ E E+ E+ E +E P
Sbjct: 67 KQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEP 108
Score = 28.4 bits (64), Expect = 2.3
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 39 EEEEEKEEEEQEEEEE--EEEEEEEQEEEFY 67
+ E E E+ +++E E E + EEE+
Sbjct: 88 DAETEDTEDVEDDEWEGFPEPTVTDYEEEYI 118
Score = 28.1 bits (63), Expect = 4.0
Identities = 9/33 (27%), Positives = 24/33 (72%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K +++++ +E++E + EEE ++EE+ + E+
Sbjct: 61 RKQELEKQLKERKEALKLLEEENDDEEDAETED 93
Score = 27.7 bits (62), Expect = 4.1
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 6/43 (13%)
Query: 29 DKRVKKIKMKEEEEE------KEEEEQEEEEEEEEEEEEQEEE 65
++ ++ +++EE ++ KE +E + EEE ++EE E
Sbjct: 49 ERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAET 91
Score = 26.9 bits (60), Expect = 8.4
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
E E+ E+ E +E E E EE Y K
Sbjct: 89 AETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDK 122
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 32.7 bits (75), Expect = 0.075
Identities = 7/39 (17%), Positives = 23/39 (58%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ KK M +++ +++ +++ +EE+ +E+++E
Sbjct: 86 KFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDED 124
Score = 30.4 bits (69), Expect = 0.49
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEE 61
+++ +EE+ +EE++E+EE+EE
Sbjct: 107 LPDDDFDEEDLDEEDDEDEEDEE 129
Score = 28.8 bits (65), Expect = 1.6
Identities = 9/47 (19%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEE-------EEEEEEEQEEE 65
+ + KK K + +++ +++ +++ EE++E+E++EE
Sbjct: 83 LEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 28.1 bits (63), Expect = 3.1
Identities = 7/41 (17%), Positives = 23/41 (56%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ +++ K K K + + + + + +++ +EE+ +EE
Sbjct: 80 IIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEE 120
Score = 28.1 bits (63), Expect = 3.9
Identities = 9/48 (18%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEE-------EEEEEEQEEE 65
+ +++K KK K + ++ ++ +++ EE++E++E+E
Sbjct: 81 IPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDE 128
Score = 26.9 bits (60), Expect = 9.5
Identities = 5/41 (12%), Positives = 19/41 (46%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++ + K K+ + ++ ++ +++ +EE +E
Sbjct: 80 IIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEE 120
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 33.2 bits (76), Expect = 0.082
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
I + EE EKE++E +E EE+E + ++E+ K K E
Sbjct: 87 SINLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAE 128
Score = 27.8 bits (62), Expect = 4.7
Identities = 8/32 (25%), Positives = 23/32 (71%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEE 59
+ ++ +K KE EE++ + ++E++E++E++
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 32.2 bits (74), Expect = 0.088
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 7/49 (14%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEE-------EEEEEEEEEEQEEE 65
+V +DD + +EE E K + EQE+ EEEEEE++ EE
Sbjct: 60 KVPLDDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 33.6 bits (77), Expect = 0.098
Identities = 8/26 (30%), Positives = 19/26 (73%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ E+ E+E+ +E+E++++ EE+E
Sbjct: 219 ADSEDNEDEDDPKEDEDDDQGEEEES 244
Score = 32.1 bits (73), Expect = 0.36
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+ E E++ +E+E++++ EEEE
Sbjct: 221 SEDNEDEDDPKEDEDDDQGEEEESGSS 247
Score = 31.7 bits (72), Expect = 0.42
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
RVV D M EE +E E + E+ E+E++ +E+E
Sbjct: 197 RVVRDMLS----SMDMAEELGDEPESADSEDNEDEDDPKEDE 234
Score = 31.3 bits (71), Expect = 0.63
Identities = 9/28 (32%), Positives = 20/28 (71%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E + E+ E E++ +E+E++++ EEE
Sbjct: 215 EPESADSEDNEDEDDPKEDEDDDQGEEE 242
Score = 30.6 bits (69), Expect = 0.94
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E E+E + +E+E++++ E+EE
Sbjct: 218 SADSEDNEDEDDPKEDEDDDQGEEEES 244
Score = 30.6 bits (69), Expect = 1.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE + E+ + EE E E E
Sbjct: 241 EEESGSSDSLSEDSDASSEEMESGEME 267
Score = 30.2 bits (68), Expect = 1.3
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEE + E+ + EE E E
Sbjct: 240 EEEESGSSDSLSEDSDASSEEMESGEM 266
Score = 29.4 bits (66), Expect = 2.7
Identities = 7/36 (19%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 39 EEEEEKEEEEQE----EEEEEEEEEEEQEEEFYTKS 70
+E++++ EEE+ E+ + E+ E ++
Sbjct: 233 DEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEA 268
Score = 29.0 bits (65), Expect = 3.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
E+E++ +E+E +++ EEEE
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGSSDSL 250
Score = 27.9 bits (62), Expect = 7.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ +E E+++Q EEEE + E+
Sbjct: 228 DDPKEDEDDDQGEEEESGSSDSLSEDS 254
Score = 27.9 bits (62), Expect = 7.7
Identities = 5/27 (18%), Positives = 17/27 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +E++++++ EEEE + ++ +
Sbjct: 229 DPKEDEDDDQGEEEESGSSDSLSEDSD 255
Score = 27.9 bits (62), Expect = 8.2
Identities = 7/30 (23%), Positives = 17/30 (56%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E++ +++E++ + EEEE + E+
Sbjct: 224 NEDEDDPKEDEDDDQGEEEESGSSDSLSED 253
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein
is found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 33.5 bits (77), Expect = 0.099
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 30 KRVKKIKMK----EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
K+ KK K K +++EE++E+E E+E++ +E E +E + K
Sbjct: 2 KKKKKKKSKLSFGDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKK 48
Score = 31.2 bits (71), Expect = 0.57
Identities = 13/45 (28%), Positives = 26/45 (57%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
K+ KK K+ ++++EE+E E E+E++ +E E + +P
Sbjct: 2 KKKKKKKSKLSFGDDDEEEDEDEGEDEKKVPKESSEPDEANVNPN 46
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 33.9 bits (77), Expect = 0.10
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEEKEE +E EE EE E + E+
Sbjct: 110 TVEEEEKEESREEREEVEETEGVTKSEQ 137
Score = 32.3 bits (73), Expect = 0.35
Identities = 17/37 (45%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 36 KMKEEE--EEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
+M+E+ E + EE+E+EE EE EE +E E TKS
Sbjct: 99 RMQEDSGAENETVEEEEKEESREEREEVEETEGVTKS 135
Score = 32.3 bits (73), Expect = 0.38
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELM 77
++ K +++ + ++ EE ++EE+E E EEE++ + + E M
Sbjct: 126 VEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFM 175
Score = 32.3 bits (73), Expect = 0.38
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+EE+EE EE +E EE E + EQ+ +
Sbjct: 113 EEEKEESREEREEVEETEGVTKSEQKND 140
Score = 31.9 bits (72), Expect = 0.47
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 18 SSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKC 73
S S+ R + +D + ++EEE+E+ EE+EE EE E + +++ + + +C
Sbjct: 92 SLSEPSRRMQEDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEEC 147
Score = 31.2 bits (70), Expect = 0.70
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
EE +K+ EE+ + EEEE+ +QEE
Sbjct: 217 EELKKKREERRKVLEEEEQRRKQEEADR 244
Score = 30.8 bits (69), Expect = 0.93
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
K K EE K EE+E+ ++EE + + EE + K
Sbjct: 220 KKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLK 256
Score = 30.8 bits (69), Expect = 1.0
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
E EE K++ E+ + EEEE+ ++EE KS
Sbjct: 215 ELEELKKKREERRKVLEEEEQRRKQEEADRKS 246
Score = 30.0 bits (67), Expect = 1.6
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V + + V K + K + + EE ++EE+E E EEEE+ +
Sbjct: 126 VEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRG 165
Score = 29.2 bits (65), Expect = 2.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K K +E + EEEEQ ++EE + + +EEE
Sbjct: 220 KKKREERRKVLEEEEQRRKQEEADRKSREEEE 251
Score = 29.2 bits (65), Expect = 3.6
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 7/43 (16%)
Query: 30 KRVKKIKMKEEEEEKEEEE-------QEEEEEEEEEEEEQEEE 65
KR ++ K+ EEEE++ ++E +EEE+ +EE E+
Sbjct: 222 KREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRA 264
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 32.2 bits (73), Expect = 0.10
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEE 61
K E ++EE++EEEEEEE+
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEED 104
Score = 32.2 bits (73), Expect = 0.12
Identities = 11/17 (64%), Positives = 16/17 (94%)
Query: 42 EEKEEEEQEEEEEEEEE 58
E K+EE++EEEEEEE++
Sbjct: 89 EAKKEEKKEEEEEEEDD 105
Score = 30.6 bits (69), Expect = 0.35
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ E ++EE++EEEEEEE + F
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDDLGF 108
Score = 29.1 bits (65), Expect = 1.0
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEE 51
K KEE++E+EEEE+++
Sbjct: 81 AATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.0 bits (62), Expect = 3.2
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 35 IKMKEEEEEKEEEEQEEEEE 54
K + ++EEK+EEE+EEE++
Sbjct: 86 AKAEAKKEEKKEEEEEEEDD 105
Score = 27.6 bits (61), Expect = 4.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 39 EEEEEKEEEEQEEEEEEEEEE 59
+ E ++EE++EEEEEEE++
Sbjct: 85 GAKAEAKKEEKKEEEEEEEDD 105
Score = 27.6 bits (61), Expect = 4.4
Identities = 9/19 (47%), Positives = 17/19 (89%)
Query: 38 KEEEEEKEEEEQEEEEEEE 56
K E +++E++E+EEEEE++
Sbjct: 87 KAEAKKEEKKEEEEEEEDD 105
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 33.8 bits (77), Expect = 0.11
Identities = 15/21 (71%), Positives = 16/21 (76%)
Query: 41 EEEKEEEEQEEEEEEEEEEEE 61
+ E EE EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 32.6 bits (74), Expect = 0.25
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 39 EEEEEKEEEEQEEEEEEEEEE 59
+ E EE+E+EEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 32.2 bits (73), Expect = 0.32
Identities = 14/20 (70%), Positives = 17/20 (85%)
Query: 45 EEEEQEEEEEEEEEEEEQEE 64
+ E EE+EEEEEEEEE+EE
Sbjct: 224 SDSESEEDEEEEEEEEEEEE 243
Score = 31.4 bits (71), Expect = 0.55
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 45 EEEEQEEEEEEEEEEEEQEEE 65
+ + EE+EEEEEEEE+EEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 31.4 bits (71), Expect = 0.56
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 40 EEEEKEEEEQEEEEEEEEEEE 60
+ + EE++EEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 30.3 bits (68), Expect = 1.3
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQ 62
E E++EEEEEEEEEEE+
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A
peptide from the central, syntaxin binding domain of
synaphin competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal
exocytosis by promoting interaction between the
complementary syntaxin and synaptobrevin transmembrane
regions that reside in opposing membranes prior to
fusion.
Length = 139
Score = 32.6 bits (74), Expect = 0.12
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
K E +E EEE EE +E E EE+ + + K + E+M Q
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQ 66
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation
termination are recognised and rapidly degraded by
eukaryotic cells through a pathway known as
nonsense-mediated mRNA decay. In Saccharomyces
cerevisiae, three trans-acting factors (Upf1 to Upf3)
are required for nonsense-mediated mRNA decay.
Length = 171
Score = 32.7 bits (75), Expect = 0.12
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+EE EE+E +E +EEE + +E+
Sbjct: 12 EDEELPEEDEDDESSDEEEVDLPDDEQ 38
Score = 32.0 bits (73), Expect = 0.25
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ EEE+ ++EEE + E E E + EF
Sbjct: 43 DSEEEQIFVTRQEEEVDPEAEAEFDREF 70
Score = 32.0 bits (73), Expect = 0.25
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE+EE EE++++E +EEE + ++E
Sbjct: 11 EEDEELPEEDEDDESSDEEEVDLPDDE 37
Score = 31.6 bits (72), Expect = 0.34
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E EE E++E +EEE + ++EQ+EE
Sbjct: 15 ELPEEDEDDESSDEEEVDLPDDEQDEES 42
Score = 31.2 bits (71), Expect = 0.40
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E++E +EEE + ++E++EE + EEE
Sbjct: 19 EDEDDESSDEEEVDLPDDEQDEESDSEEE 47
Score = 30.8 bits (70), Expect = 0.51
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
+++E EEE ++E++EE + +EE+ +
Sbjct: 21 EDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQ 54
Score = 30.8 bits (70), Expect = 0.54
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++EE +E+E+ E +EEE + + E++
Sbjct: 11 EEDEELPEEDEDDESSDEEEVDLPDDEQD 39
Score = 30.0 bits (68), Expect = 1.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
E ++ EE+E+ EE+E++E ++EE +
Sbjct: 6 ESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQ 38
Score = 29.7 bits (67), Expect = 1.2
Identities = 10/36 (27%), Positives = 23/36 (63%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+E ++EE + ++E++EE + E+E+ F T+ +
Sbjct: 21 EDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEE 56
Score = 28.9 bits (65), Expect = 2.4
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E+E+++ +E+E + ++E++EE + E
Sbjct: 17 PEEDEDDESSDEEEVDLPDDEQDEESDSE 45
Score = 28.9 bits (65), Expect = 2.4
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EE++E E++E++E +EEE +
Sbjct: 9 DGEEDEELPEEDEDDESSDEEEVDLPD 35
Score = 28.5 bits (64), Expect = 3.1
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E ++ +E+EE EE+E++E +E+E +
Sbjct: 6 ESDDGEEDEELPEEDEDDESSDEEEVD 32
Score = 28.5 bits (64), Expect = 3.5
Identities = 8/27 (29%), Positives = 20/27 (74%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE E++E+++ +EEE + +++++E
Sbjct: 14 EELPEEDEDDESSDEEEVDLPDDEQDE 40
Score = 28.1 bits (63), Expect = 4.3
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ E++EE EE+E++E +EE+ +
Sbjct: 7 SDDGEEDEELPEEDEDDESSDEEEVDL 33
Score = 27.7 bits (62), Expect = 5.8
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ EE EE +E+E++E +EEE +
Sbjct: 8 DDGEEDEELPEEDEDDESSDEEEVDLP 34
Score = 27.7 bits (62), Expect = 6.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++EE + EEE+ +EEE + E E EF
Sbjct: 38 QDEESDSEEEQIFVTRQEEEVDPEAEAEF 66
Score = 27.3 bits (61), Expect = 7.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E + EE EE EE+E++E +EE
Sbjct: 3 SESESDDGEEDEELPEEDEDDESSDEE 29
Score = 27.3 bits (61), Expect = 9.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
E E + EE++E EE+E++E EEE
Sbjct: 4 ESESDDGEEDEELPEEDEDDESSDEEEVD 32
Score = 27.3 bits (61), Expect = 9.3
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 39 EEEEEKEEEEQEEE---EEEEEEEEEQEEE 65
EEE + ++EQ+EE EEE+ QEEE
Sbjct: 28 EEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 33.7 bits (77), Expect = 0.12
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + +EEE + E+E + EE E++ +++EEE
Sbjct: 160 KKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEE 197
Score = 31.7 bits (72), Expect = 0.56
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
+ E E+E + EE E++ ++EEEE+ + E Y
Sbjct: 170 DDEEESESEDESKSEESAEDDSDDEEEEDSDSEDY 204
Score = 30.6 bits (69), Expect = 1.1
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ KK K KE +E +++++EE E E+E + E+ E
Sbjct: 151 AKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAE 188
Score = 30.2 bits (68), Expect = 1.5
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K K K + +E +++E+E E E+E + EE E+
Sbjct: 152 KKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAED 189
Score = 29.0 bits (65), Expect = 4.2
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQE---EEEEEEEEEEEQEEE 65
K+ K +++EE+ E E E EE E++ ++E+EE+
Sbjct: 158 SKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEED 198
Score = 28.3 bits (63), Expect = 5.7
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
DK ++ E+E + EE +++ ++EEEE+ + E+
Sbjct: 168 DKDDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 28.3 bits (63), Expect = 6.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
DD+ + + + + EE E++ ++EEEE+ + E+
Sbjct: 170 DDEEESESEDESKSEESAEDDSDDEEEEDSDSED 203
Score = 28.3 bits (63), Expect = 6.5
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ KK + KE ++ +EEE E E+E + EE +++
Sbjct: 154 KTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDS 191
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 33.7 bits (78), Expect = 0.13
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
D++++ + KEE EK+E+E +E+ +E+EE+ EE + + LE
Sbjct: 93 DRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELE 139
Score = 28.4 bits (64), Expect = 5.5
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
+K+ K++ KE+ +++EEE EE E+ EE E+
Sbjct: 107 EKKEKELSNKEKNLDEKEEELEELIAEQREELER 140
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 31.5 bits (72), Expect = 0.13
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
V D + KK + +E++EE E ++EEE E+ +
Sbjct: 48 VTDKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 29.2 bits (66), Expect = 0.80
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+K K+EE E+++EE E ++EEE E +
Sbjct: 49 TDKVKEKKEEREEDKEELIERIKKEEETFEDVDL 82
Score = 28.8 bits (65), Expect = 1.1
Identities = 12/36 (33%), Positives = 25/36 (69%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
R +++ ++ +EK+EE +E++EE E +++EE F
Sbjct: 42 RTDYLEVTDKVKEKKEEREEDKEELIERIKKEEETF 77
Score = 27.7 bits (62), Expect = 3.1
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKC 73
+E++E+ EE++EE E ++EEE E+ S C
Sbjct: 52 VKEKKEEREEDKEELIERIKKEEETFEDVDLGSAGC 87
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 33.7 bits (77), Expect = 0.13
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
RV + K K +E K E +EEE+E+E+ +EE+++
Sbjct: 79 RVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKK 119
Score = 32.6 bits (74), Expect = 0.33
Identities = 10/45 (22%), Positives = 30/45 (66%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
++ K+ + ++E+ ++E+++++E+ +EE ++ + +EE K P
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPP 143
Score = 31.8 bits (72), Expect = 0.53
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
K K+ K + +EE++E+EQ +EE+++++E+ +EE K + +
Sbjct: 93 KPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAK 138
Score = 31.8 bits (72), Expect = 0.57
Identities = 12/43 (27%), Positives = 29/43 (67%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+ +K ++KEE+++K+E+ +EE ++ + +EE +E+ + K
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Score = 31.4 bits (71), Expect = 0.71
Identities = 12/38 (31%), Positives = 25/38 (65%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ ++VK+ K K++E+ KEE + + +EE +E+ +E
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKE 145
Score = 31.0 bits (70), Expect = 0.99
Identities = 12/37 (32%), Positives = 28/37 (75%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
++K+ KK K KEE ++++ +E+ +E+ +E+E+++E
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKE 151
Score = 30.2 bits (68), Expect = 1.7
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D K ++ K K +EKE+E++++ EE + EEE++ E
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRE 167
Score = 29.9 bits (67), Expect = 1.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+KR K K KE+E++ EE EEE++ E + K P
Sbjct: 139 EKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRP---KKPP 179
Score = 29.9 bits (67), Expect = 2.1
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 18 SSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+ + + K + K KE+E+EK+ EE + EEE++ E + + K PK
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPK 180
Score = 28.7 bits (64), Expect = 5.0
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ KK K K +EE K+ + +EE +E+ +E+++E+
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association
with mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 31.6 bits (72), Expect = 0.13
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E E +EEE+EEEEE++ E+ E+EF
Sbjct: 4 TEAEVDDEEEEEEEEEDDLEDLSDEDEF 31
Score = 29.7 bits (67), Expect = 0.58
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ E E ++EE+EEEEEE++ E+ +E+
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDE 30
Score = 28.2 bits (63), Expect = 1.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYT 68
++EE+EEEE+E++ E+ +E+E +E
Sbjct: 8 VDDEEEEEEEEEDDLEDLSDEDEFIDEAEA 37
Score = 27.0 bits (60), Expect = 4.7
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +++EEEE+EEE++ E+ +E E
Sbjct: 7 EVDDEEEEEEEEEDDLEDLSDEDEFI 32
Score = 26.6 bits (59), Expect = 6.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 48 EQEEEEEEEEEEEEQEEEFY 67
+ E E ++EEEEEE+EE+
Sbjct: 3 DTEAEVDDEEEEEEEEEDDL 22
Score = 26.3 bits (58), Expect = 8.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
EEEEE+EEE+ E+ +E+E ++ E
Sbjct: 11 EEEEEEEEEDDLEDLSDEDEFIDEAEAE 38
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more
internally with limited reactivity in the C-terminal
domains, while P2 proteins seem to be more externally
located and are more likely to interact with other
cellular components. In lower eukaryotes, P1 and P2 are
further subdivided into P1A, P1B, P2A, and P2B, which
form P1A/P2B and P1B/P2A heterodimers. Some plant
species have a third P-protein, called P3, which is not
homologous to P1 and P2. In humans, P1 and P2 are
strongly autoimmunogenic. They play a significant role
in the etiology and pathogenesis of systemic lupus
erythema (SLE). In addition, the ribosome-inactivating
protein trichosanthin (TCS) interacts with human P0,
P1, and P2, with its primary binding site located in
the C-terminal region of P2. TCS inactivates the
ribosome by depurinating a specific adenine in the
sarcin-ricin loop of 28S rRNA.
Length = 103
Score = 31.5 bits (72), Expect = 0.13
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 40 EEEEKEEEEQEEEEEEEEEE 59
E K+EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.0 bits (68), Expect = 0.54
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 41 EEEKEEEEQEEEEEEEEEEE 60
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 0.76
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 38 KEEEEEKEEEEQEEEEEEEEE 58
E +KEE+++EEEEE +++
Sbjct: 77 AAAEAKKEEKKEEEEEESDDD 97
Score = 28.8 bits (65), Expect = 1.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEE 64
E ++EE++EEEEEE ++
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDDD 97
Score = 28.1 bits (63), Expect = 2.4
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 46 EEEQEEEEEEEEEEEEQEEEF 66
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDDM 98
Score = 27.3 bits (61), Expect = 4.4
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEE 61
+ ++E+++EEEEEE +++
Sbjct: 74 AAAAAAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|225468 COG2916, Hns, DNA-binding protein H-NS [General function
prediction only].
Length = 128
Score = 32.0 bits (73), Expect = 0.14
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEE----EEQEEEEEEEEEEEEQEEEFYT 68
R + R +++ EE EKEE E QEEE E EE++E++ T
Sbjct: 6 RTLRAMARETYLELLEEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGT 54
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 33.5 bits (77), Expect = 0.14
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 41 EEEKEEEEQEEEEEEEEEEEE 61
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.1 bits (71), Expect = 0.64
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 40 EEEEKEEEEQEEEEEEEEEEE 60
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.8 bits (70), Expect = 0.83
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 38 KEEEEEKEEEEQEEEEEEEEE 58
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 1.8
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEE 59
EEEEEEE++
Sbjct: 282 AAAAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 2.1
Identities = 6/23 (26%), Positives = 9/23 (39%)
Query: 43 EKEEEEQEEEEEEEEEEEEQEEE 65
EEEEE+E++
Sbjct: 281 AAAAAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 2.2
Identities = 6/21 (28%), Positives = 8/21 (38%)
Query: 46 EEEQEEEEEEEEEEEEQEEEF 66
EEEE+EE+
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 28.4 bits (64), Expect = 5.2
Identities = 8/22 (36%), Positives = 9/22 (40%)
Query: 45 EEEEQEEEEEEEEEEEEQEEEF 66
EEEEEEE + F
Sbjct: 285 AAAAAAAAPAEEEEEEEDDMGF 306
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 32.4 bits (74), Expect = 0.15
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+EEEE EEE +E E+E+ E + E + K
Sbjct: 95 DDEEEETEEESTDETEQEDPPETKTESKEKKKREV 129
Score = 30.9 bits (70), Expect = 0.46
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+E +EEE+ EEE +E E+E E T+S +
Sbjct: 88 FRELSSSDDEEEETEEESTDETEQEDPPETKTESKE 123
Score = 29.0 bits (65), Expect = 2.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+ EEEE EEE +E E+E+ E K
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEK 124
Score = 27.0 bits (60), Expect = 9.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+++EEE +EE +E E+E+ E + +K K
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKK 125
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 33.4 bits (77), Expect = 0.15
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ +K+ + + E +EEE++E++EE++ EE
Sbjct: 285 EQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEET 321
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs
such as TonB. Selection of members of the seed
alignment and criteria for setting scoring cutoffs are
based largely conserved operon struction. //The Tol-Pal
complex is required for maintaining outer membrane
integrity. Also involved in transport (uptake) of
colicins and filamentous DNA, and implicated in
pathogenesis. Transport is energized by the proton
motive force. TolA is an inner membrane protein that
interacts with periplasmic TolB and with outer membrane
porins ompC, phoE and lamB [Transport and binding
proteins, Other, Cellular processes, Pathogenesis].
Length = 346
Score = 33.3 bits (76), Expect = 0.15
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 7 KNSALGGVVSISSSQCHRVVVDDKRV-----------KKIKMKEEEEEKEEEEQEEEEEE 55
K GG I + V+VD V K KE+E +K+ E+Q EE E+
Sbjct: 28 KPEPGGGGEIIQA-----VLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEK 82
Query: 56 EEEEEEQ 62
+ E+
Sbjct: 83 QRAAEQA 89
Score = 29.8 bits (67), Expect = 2.0
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + K K+ EE K ++ E + + E E E++ +E
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKE 146
Score = 28.3 bits (63), Expect = 6.9
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+K + E+ K+ EE++++ EE + ++ E
Sbjct: 97 RAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
Score = 27.9 bits (62), Expect = 7.8
Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE-----QEEE 65
++ + + E+ K+ E+ ++ EE++++ E Q E
Sbjct: 90 RQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 33.6 bits (76), Expect = 0.15
Identities = 13/46 (28%), Positives = 27/46 (58%)
Query: 17 ISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
I +++ + +DK+ + K EE+EK+ E ++E EE ++ E+
Sbjct: 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEE 1706
Score = 32.4 bits (73), Expect = 0.38
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 18 SSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEE-----EEEEEEQEEE 65
++ + + K+ +++K KE EE+K+ EE ++ EEE EE ++E EE+
Sbjct: 1690 AAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Score = 32.0 bits (72), Expect = 0.46
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEE----EEEEEQEEE 65
K+V+++K KE EE+K+ EE ++ EEE EE ++ EE
Sbjct: 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
Score = 30.9 bits (69), Expect = 1.2
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 31 RVKKIKMKEEEEEKEEEE---QEEEEEEEEEEEEQEEE 65
+ + K EE++K+ EE EE+E++ E ++E E
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAE 1699
Score = 30.5 bits (68), Expect = 1.6
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQ----EEEEEEEEEEEEQEEE 65
+D++ +K+E EE ++ E+ E EE+++ EE ++ EE
Sbjct: 1685 EDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEE 1726
Score = 30.5 bits (68), Expect = 1.7
Identities = 15/42 (35%), Positives = 29/42 (69%), Gaps = 4/42 (9%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEE----EEEEQEEE 65
++ ++K ++K+ EEEK++ EQ +++E EE EE ++ EE
Sbjct: 1616 EEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
Score = 30.1 bits (67), Expect = 1.9
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D K+ + +K EE ++ EE ++ EEE EE + EE
Sbjct: 1222 DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
Score = 30.1 bits (67), Expect = 2.0
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
KMK EE +K EE + + EE ++ EEE+++ K + E
Sbjct: 1606 KMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEE 1645
Score = 30.1 bits (67), Expect = 2.0
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 38 KEEEEEKEEEEQEEEEE---EEEEEEEQEEEFYTKS 70
EE +K EE++++ EE EE+E++ E ++
Sbjct: 1663 AAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698
Score = 29.7 bits (66), Expect = 2.6
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K ++ K+K EE K+ EE +++ EE ++ EE E++
Sbjct: 1654 KAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKK 1689
Score = 29.7 bits (66), Expect = 2.9
Identities = 11/44 (25%), Positives = 28/44 (63%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
+ + ++ K + EE++K+ EE +++EEE+++ ++E K+
Sbjct: 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKA 1770
Score = 29.3 bits (65), Expect = 3.2
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ ++ K K EE +K EE++++ E ++E E+ ++
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKK 1703
Score = 29.3 bits (65), Expect = 4.0
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLEL 76
K + +K + EE +K EE +++E EE+++ EE ++ K E
Sbjct: 1689 KAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEA 1735
Score = 29.3 bits (65), Expect = 4.0
Identities = 12/35 (34%), Positives = 25/35 (71%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
++K++K + K+ EE K + E+ ++ EEE+++ EQ
Sbjct: 1603 EEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQ 1637
Score = 29.0 bits (64), Expect = 4.4
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ + K E ++K +E ++ EE ++ +E ++ EE
Sbjct: 1497 KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEE 1532
Score = 29.0 bits (64), Expect = 4.9
Identities = 12/35 (34%), Positives = 26/35 (74%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+ KIK +E ++E EE++++ EE +++EEE+++
Sbjct: 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKK 1758
Score = 29.0 bits (64), Expect = 5.3
Identities = 8/37 (21%), Positives = 24/37 (64%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
++ ++K + ++ EE +++ +E ++ EE+E++ E
Sbjct: 1657 EENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 33.6 bits (78), Expect = 0.16
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
EE+ E EE +++E+EE+EE+ S
Sbjct: 177 NAEEDPAHVGSELEELDDDEDEEEEEDENDDS 208
Score = 33.6 bits (78), Expect = 0.16
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
EE+ E EE +++E+EEEE++E
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDE 204
Score = 33.2 bits (77), Expect = 0.21
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R+ ++R++++ + EE+ E EE +++++EE
Sbjct: 158 RLENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEE 199
Score = 32.5 bits (75), Expect = 0.32
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE E EE +++E+E+EEE
Sbjct: 176 PNAEEDPAHVGSELEELDDDEDEEEEE 202
Score = 32.5 bits (75), Expect = 0.36
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
I++ EE + ++ E E + + +E+ EEE
Sbjct: 56 GIQVVEEAPDADDLLLAENEADAQTDEDAEEEA 88
Score = 32.1 bits (74), Expect = 0.45
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E+ E +E +++E+EEEEE E +
Sbjct: 179 EEDPAHVGSELEELDDDEDEEEEEDEND 206
Score = 31.7 bits (73), Expect = 0.51
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
+ E E+ +++E+EEEEE++ ++
Sbjct: 181 DPAHVGSELEELDDDEDEEEEEDENDDSLAA 211
Score = 30.1 bits (69), Expect = 1.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E++ E EE +++E++EEE
Sbjct: 175 DPNAEEDPAHVGSELEELDDDEDEEEE 201
Score = 28.6 bits (65), Expect = 5.7
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
++ + + EE + +E+E+EEE+E ++ E E K
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 31.2 bits (71), Expect = 0.19
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
I+ +E + ++ EEE E+EEE+E+
Sbjct: 71 IQEEERRSARLARLEDREEERLEKEEEREKR 101
Score = 29.7 bits (67), Expect = 0.61
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 39 EEEEEKEE----EEQEEEEEEEEEEEEQEEE 65
+EEE + E EEE E+EEE ++
Sbjct: 72 QEEERRSARLARLEDREEERLEKEEEREKRA 102
Score = 28.5 bits (64), Expect = 1.6
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 37 MKEEE-------EEKEEEEQEEEEEEEEEEE 60
+EE E EEE+ E+EEE E+
Sbjct: 72 QEEERRSARLARLEDREEERLEKEEEREKRA 102
Score = 28.5 bits (64), Expect = 1.9
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEE 56
+R ++ E+ EE+ E++EE E+
Sbjct: 76 RRSARLARLEDREEERLEKEEEREKRA 102
Score = 28.1 bits (63), Expect = 2.4
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEE 58
++ E+ +EE ++EEE E+
Sbjct: 80 RLARLEDREEERLEKEEEREKRA 102
Score = 27.3 bits (61), Expect = 4.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQ 62
E++EEE E+EEE E+ ++
Sbjct: 83 RLEDREEERLEKEEEREKRARKR 105
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 33.1 bits (76), Expect = 0.19
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
D R +K+ E + E+ E+ E E EE E+Q +
Sbjct: 94 DARAEKLDNLENQLEEREKALSARELELEELEKQLDNE 131
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 31.6 bits (72), Expect = 0.20
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 12/63 (19%)
Query: 24 RVVVDDKRVKKIKMKEEEE------------EKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
R + ++++++K + KE +E +K+ EE + EEEE+E EE EEE
Sbjct: 65 REIAEERKLQKEREKEGDEFADKEKFVTSAYKKQLEENRKLEEEEKEREELEEENDVTKG 124
Query: 72 KCL 74
K L
Sbjct: 125 KDL 127
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 33.0 bits (76), Expect = 0.20
Identities = 9/39 (23%), Positives = 26/39 (66%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
DD I +++E+ +E++ +++ ++E+EE+++ +E
Sbjct: 140 DDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKEL 178
Score = 31.5 bits (72), Expect = 0.62
Identities = 9/39 (23%), Positives = 26/39 (66%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+DD + E+++E ++++ ++E+EE++E ++ E+
Sbjct: 142 LDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEK 180
Score = 31.1 bits (71), Expect = 0.93
Identities = 9/49 (18%), Positives = 26/49 (53%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLEL 76
DD + +++++ ++E++E++E +E E+ +++F L
Sbjct: 149 DDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEAL 197
Score = 30.3 bits (69), Expect = 1.3
Identities = 9/50 (18%), Positives = 23/50 (46%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
DD+ + +E+EEK+E ++ E+ ++++ E++
Sbjct: 151 DDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQA 200
Score = 28.0 bits (63), Expect = 7.8
Identities = 7/38 (18%), Positives = 28/38 (73%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
DD + + +++++++++E +++++ ++E+EE++E
Sbjct: 138 DDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEA 175
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 33.0 bits (76), Expect = 0.21
Identities = 20/33 (60%), Positives = 28/33 (84%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
V+K++ K EEEE+EE + EEEEEEE+EEE++E
Sbjct: 13 VEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 32.6 bits (75), Expect = 0.27
Identities = 18/30 (60%), Positives = 26/30 (86%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K++E+ EE+EEEE E EEEEEEE+E+E++
Sbjct: 15 KVEEKIEEEEEEEAPEAEEEEEEEDEEEKK 44
Score = 30.3 bits (69), Expect = 1.1
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
+K +KI+ +EEEE E EE+EEEE+EEE++E
Sbjct: 14 EKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 29.2 bits (66), Expect = 2.9
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++ K K EE+ +EEEE+E E EEEEEEE EEE
Sbjct: 7 EKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEE 42
Score = 29.2 bits (66), Expect = 2.9
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K K ++ EE+ E+EEEE+ E EEEEEEE++EE+
Sbjct: 7 EKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEK 43
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 32.9 bits (75), Expect = 0.21
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
E +E+E EE+EE + EE E E E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGFE 426
Score = 32.1 bits (73), Expect = 0.35
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
V K ++E +EE+ EEE+E + EE E E E
Sbjct: 395 VVKRVVREVDEEEIEEEEEAMQPEEMEMEGFE 426
Score = 31.0 bits (70), Expect = 0.91
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+K E +EEE EEEEE + EE + E F
Sbjct: 396 VKRVVREVDEEEIEEEEEAMQPEEMEMEGF 425
Score = 29.8 bits (67), Expect = 1.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRAS 85
+KE+ + E +EEE EEEE+ + + E+ P AS
Sbjct: 388 LKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFEVPALQMPAAS 436
>gnl|CDD|191022 pfam04538, BEX, Brain expressed X-linked like family. This is a
family of transcription elongation factors which
includes those referred to as Bex proteins as well as
those named TCEAL7. Bex1 was shown to be a novel link
between neurotrophin signalling, the cell cycle, and
neuronal differentiation, suggesting it might function
by coordinating internal cellular states with the
ability of cells to respond to external signals. TCEAL7
has been shown negatively to regulate the NF-kappaB
pathway, hence being important in ovarian cancer as it
one of the genes frequently downregulated in this
cancer. A closely related protein, TFIIS/TCEA, found in
pfam07500 is involved in transcription elongation and
transcript fidelity. TFIIS/TCEA promotes 3'
endoribonuclease activity of RNA polymerase II (pol II)
and allows pol II to bypass transcript pause or
'arrest' during elongation process. It is thus possible
that BEX is also acting in this way.
Length = 97
Score = 30.8 bits (70), Expect = 0.24
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 36 KMKEEEEEKEEEEQEEEEEEE--EEEEEQEEEFYTK 69
K +E E K E E +EEEE+ EE E ++ E +
Sbjct: 3 KPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGNFR 38
Score = 28.1 bits (63), Expect = 2.3
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
M++ +E E + + E +EEEE+ +E E
Sbjct: 1 MEKPCKENEGKPESEPKEEEEKRPLEEGE 29
Score = 27.7 bits (62), Expect = 2.6
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
E+ KE E + E E +EEEE+ EE K P+
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPE 34
>gnl|CDD|147374 pfam05160, DSS1_SEM1, DSS1/SEM1 family. This family contains the
breast cancer tumour suppressor BRCA2-interacting
protein DSS1 and its homologue SEM1, both of which are
short acidic proteins. DSS1 has been shown to be a
conserved component of the Rae1 mediated mRNA export
pathway in Schizosaccharomyces pombe.
Length = 63
Score = 30.0 bits (68), Expect = 0.25
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
K K+ EE++E E+ E+ EEE E+E
Sbjct: 5 QVKKKLLEEDDEFEDFPVEDWPEEETEKE 33
Score = 27.3 bits (61), Expect = 1.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
++ +++K K EE+ E E+ E+ EEE E+
Sbjct: 1 QKKEQVKKKLLEEDDEFEDFPVEDWPEEETEK 32
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 32.3 bits (73), Expect = 0.27
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQE 63
EEEE+ EE EEEE+EE
Sbjct: 176 NEEEERLEESDGREEEEDEEVGSDS 200
Score = 31.1 bits (70), Expect = 0.72
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 14/41 (34%)
Query: 39 EEEEEKEEEEQEEEEEEEE--------------EEEEQEEE 65
EEEE EE + EEEE+EE EEEE+E E
Sbjct: 177 EEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAE 217
Score = 30.7 bits (69), Expect = 0.97
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ EE+E E+ + EEEE+EE + +
Sbjct: 175 DNEEEERLEESDGREEEEDEEVGSDSY 201
Score = 30.3 bits (68), Expect = 1.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + + EE+E EE + EEE++EE
Sbjct: 170 AQPDVDNEEEERLEESDGREEEEDEE 195
Score = 30.0 bits (67), Expect = 1.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ + EEE+ EE + EEEE EE
Sbjct: 170 AQPDVDNEEEERLEESDGREEEEDEE 195
Score = 29.6 bits (66), Expect = 2.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ EEE+ EE + EEEE+EE +
Sbjct: 175 DNEEEERLEESDGREEEEDEEVGSDS 200
Score = 29.2 bits (65), Expect = 2.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+E + + EEEE EE + +EEE
Sbjct: 165 DEAPPAQPDVDNEEEERLEESDGREEEE 192
Score = 29.2 bits (65), Expect = 3.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEEFY 67
+ E+EE +E + EEEE+EE + Y
Sbjct: 175 DNEEEERLEESDGREEEEDEEVGSDSY 201
Score = 28.4 bits (63), Expect = 4.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
K+ + +E EEE + E EEE EE
Sbjct: 236 KQGEEEEMEEEVINLFEIEWEEESPSEE 263
Score = 28.0 bits (62), Expect = 5.8
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + E+EE EE + EE+E+E
Sbjct: 168 PPAQPDVDNEEEERLEESDGREEEEDE 194
Score = 27.7 bits (61), Expect = 8.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+I K+ EEE+ EEE E E EEE EE
Sbjct: 232 RIDKKQGEEEEMEEEVINLFEIEWEEESPSEE 263
>gnl|CDD|222259 pfam13608, Potyvirid-P3, Protein P3 of Potyviral polyprotein. This
is the P3 protein section of the Potyviridae
polyproteins. The function is not known except that the
protein is essential to viral survival.
Length = 445
Score = 32.5 bits (75), Expect = 0.29
Identities = 11/49 (22%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 20 SQCHRVVVDDKRVKKIKMKEEEEEKEEE-EQEEEEEEEEEEEEQEEEFY 67
+ ++ + +++K+ +E+EE++E+E + + E + EEEF
Sbjct: 263 NTLVSIINEHRKLKREAAEEKEEKEEKEIRKLYLYSKLEGKLPTEEEFL 311
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 31.7 bits (72), Expect = 0.30
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELM 77
E++EKEE QEEE+EEE E+ +Q+E F K K + M
Sbjct: 79 AEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKPFKEM 117
Score = 31.0 bits (70), Expect = 0.62
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
+ I ++E+EE +EE++EEE E+ +++E K
Sbjct: 75 REDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRKKP 113
Score = 31.0 bits (70), Expect = 0.63
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 20 SQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
S+ ++ + +K K E E ++ EQ+E+EE +EEE++EE
Sbjct: 52 SKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEA 97
Score = 30.2 bits (68), Expect = 0.91
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ E E+ E++E+EE +EEE+EEE E+
Sbjct: 68 KEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDV 100
Score = 29.8 bits (67), Expect = 1.4
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+K + + ++ E++E+EE +EEE+EEE E+ +++ +
Sbjct: 66 KEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKR 110
Score = 29.0 bits (65), Expect = 2.1
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +K KEEE++ E EE E+E+E E E E E
Sbjct: 48 EHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAE 80
Score = 29.0 bits (65), Expect = 2.4
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 19 SSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
S + + + ++ K+ + E E E E+QE+EE +EEE+E+E E
Sbjct: 52 SKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAE 98
Score = 27.5 bits (61), Expect = 7.2
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K + ++ +EKEEE++ +E + +EEEQ+ E
Sbjct: 28 QKTFIIKKADEKEEEKENSDEHVKSKEEEQKIE 60
Score = 27.5 bits (61), Expect = 8.9
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
K +K +EEE++ E +E E+E+E E E+E+
Sbjct: 43 KENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIA 79
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 31.1 bits (70), Expect = 0.31
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
+ +E +E E + +E +EEE+ +E ++
Sbjct: 79 ADADEDADEAAEADAADEADEEEETDEAVDETA 111
Score = 31.1 bits (70), Expect = 0.38
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYT 68
EE E + +E +E E + +E +EE T
Sbjct: 74 EEAEAADADEDADEAAEADAADEADEEEET 103
Score = 30.3 bits (68), Expect = 0.63
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E EE E + +E+ +E E + +E
Sbjct: 71 EAAEEAEAADADEDADEAAEADAADEA 97
Score = 29.5 bits (66), Expect = 0.98
Identities = 6/28 (21%), Positives = 12/28 (42%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EE E + +E+ +E E +
Sbjct: 65 AATAAAEAAEEAEAADADEDADEAAEAD 92
Score = 29.5 bits (66), Expect = 0.99
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQE 63
+E E + + EE +EEE+EE +
Sbjct: 107 VDETADEADAEAEEADEEEDEEAEA 131
Score = 29.5 bits (66), Expect = 1.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+EEEE +E E +E + E EE +EE
Sbjct: 98 DEEEETDEAVDETADEADAEAEEADEE 124
Score = 29.5 bits (66), Expect = 1.2
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +E +E E + E EE +EE++EE
Sbjct: 102 ETDEAVDETADEADAEAEEADEEEDEE 128
Score = 29.5 bits (66), Expect = 1.3
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E + +E+ E E + +E ++EEE
Sbjct: 75 EAEAADADEDADEAAEADAADEADEEEE 102
Score = 29.1 bits (65), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEE 64
+E +E + E EE +EEE+EE E
Sbjct: 107 VDETADEADAEAEEADEEEDEEAEA 131
Score = 29.1 bits (65), Expect = 1.6
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E EE E + +E+ +E E +
Sbjct: 68 AAAEAAEEAEAADADEDADEAAEADAA 94
Score = 28.8 bits (64), Expect = 2.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +E +E E EE +EEE+E+ E
Sbjct: 105 EAVDETADEADAEAEEADEEEDEEAEA 131
Score = 28.8 bits (64), Expect = 2.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
D++ + E +E + E +E +EEE+EE E
Sbjct: 97 ADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 28.8 bits (64), Expect = 2.2
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE + + E+ +E E + E +
Sbjct: 72 AAEEAEAADADEDADEAAEADAADEAD 98
Score = 28.8 bits (64), Expect = 2.3
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R +K E E+ E + +E+ +E E
Sbjct: 57 RAEKGPAAAATAAAEAAEEAEAADADEDADEAAEA 91
Score = 28.4 bits (63), Expect = 2.5
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E+ E +E+ +E E + +E
Sbjct: 69 AAEAAEEAEAADADEDADEAAEADAADE 96
Score = 28.4 bits (63), Expect = 2.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE +E +E +E + E EE +E+E+E
Sbjct: 101 EETDEAVDETADEADAEAEEADEEEDE 127
Score = 28.4 bits (63), Expect = 3.0
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
+E+ E E + +E +EEEE E T
Sbjct: 81 ADEDADEAAEADAADEADEEEETDEAVDETAD 112
Score = 28.0 bits (62), Expect = 3.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E ++ +E + E EE +EEE++E E
Sbjct: 104 DEAVDETADEADAEAEEADEEEDEEAE 130
Score = 28.0 bits (62), Expect = 3.3
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEEE E ++ +E + E EE EEE
Sbjct: 99 EEEETDEAVDETADEADAEAEEADEEE 125
Score = 27.2 bits (60), Expect = 7.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +EE+E +E +E +E + E +E +
Sbjct: 96 EADEEEETDEAVDETADEADAEAEEAD 122
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 32.7 bits (74), Expect = 0.31
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
K K E E+K EE+E E+E+E+E E + E
Sbjct: 587 KAKREAEQKAREEREREKEKEKERERERE 615
Score = 32.0 bits (72), Expect = 0.47
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
V+K K + E++ +EE E+E+E+E+E E E + E
Sbjct: 585 VEKAKREAEQKAREEREREKEKEKERERERERE 617
Score = 30.4 bits (68), Expect = 1.5
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KR + ++ + E E++ E+ E E+E+E+E E+E E
Sbjct: 580 KREEAVEKAKREAEQKAREEREREKEKEKERERERE 615
Score = 30.4 bits (68), Expect = 1.7
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
KR + K +EE E ++E+E+E E E E E E
Sbjct: 589 KREAEQKAREEREREKEKEKEREREREREAE 619
Score = 30.0 bits (67), Expect = 1.9
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 33 KKIKMKEEEEEK---EEEEQEEEEEEEEEEEEQEEE 65
K K +EE EK E E++ EE E E+E+E+E E
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKERE 611
Score = 28.1 bits (62), Expect = 8.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQ 62
EE E+E+E+++E E E E E E+
Sbjct: 598 EEREREKEKEKEREREREREAER 620
>gnl|CDD|215009 smart01069, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic
protein kinases. This domains corresponds to the C
terminal domain whose function is unclear. It is found
C terminal to the Hsp90 chaperone (Heat shocked protein
90) binding domain pfam08565 and the N terminal kinase
binding domain of Cdc37.
Length = 93
Score = 30.4 bits (69), Expect = 0.31
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E KE +EQ E EEE E+E+E+EE+
Sbjct: 67 ETEFKELQEQYEVEEEAEKEDEEEED 92
Score = 29.3 bits (66), Expect = 0.76
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V E E ++ +E+ E EEE E+E+EE+E++
Sbjct: 60 VPNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 32.4 bits (75), Expect = 0.32
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
++DK+++ + +E + EE E
Sbjct: 530 IEDKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP),
alpha subunit. The alpha-subunit of the TRAP complex
(TRAP alpha) is a single-spanning membrane protein of
the endoplasmic reticulum (ER) which is found in
proximity of nascent polypeptide chains translocating
across the membrane.
Length = 281
Score = 32.1 bits (73), Expect = 0.32
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
+E+E++E EE+E E EEEE EE SP
Sbjct: 45 VDEDEEDEAVVEEDENELTEEEEDEEGEVKASP 77
Score = 29.4 bits (66), Expect = 2.2
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
+E++E+E EE+E E EEE++EE K+
Sbjct: 44 VVDEDEEDEAVVEEDENELTEEEEDEEGEVKA 75
Score = 28.6 bits (64), Expect = 4.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+EE E++ +E+EE+E EE E E
Sbjct: 36 EDEEAEDDVVDEDEEDEAVVEEDENE 61
Score = 28.6 bits (64), Expect = 4.4
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ E+EE E++ +E+EE+E E
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVE 56
Score = 28.6 bits (64), Expect = 4.5
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+EE +++ E+EE+E EE++ E
Sbjct: 36 EDEEAEDDVVDEDEEDEAVVEEDENEL 62
Score = 28.2 bits (63), Expect = 5.4
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRA 84
E+E+ E++ +E+EE+E E++E T+ + E ++ SP A
Sbjct: 36 EDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKASPDA 79
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 32.4 bits (74), Expect = 0.32
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+ EE ++ EEE ++E E E E E PK
Sbjct: 241 LLEESDDDGEEESDDESAWEGFESEYEPINKPVRPK 276
Score = 31.6 bits (72), Expect = 0.55
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKC 73
EE ++ E+E ++E E E E E K +
Sbjct: 242 LEESDDDGEEESDDESAWEGFESEYEPINKPVRP 275
Score = 31.2 bits (71), Expect = 0.65
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKC 73
M E E+ +++ EEE ++E E E E+ +
Sbjct: 237 MSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPV 273
Score = 31.2 bits (71), Expect = 0.79
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+K VK K ++E E EE++ E+ E +E E
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSE 239
Score = 30.8 bits (70), Expect = 0.97
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
V KR K + +E+ KE E + +EE++ +++ Q
Sbjct: 273 VRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLA 310
Score = 29.3 bits (66), Expect = 2.7
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLEL 76
E+E + E++ QE E EE++ E+ E L
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGL 241
Score = 28.9 bits (65), Expect = 4.3
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
R+K+I + ++EK ++E+ +E E+++ +
Sbjct: 311 RLKEIAKEVAQKEKARARKKEQRKERGEKKKLK 343
Score = 28.9 bits (65), Expect = 4.3
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQC 80
+E+ E+E + E++ +E E +E++ +P+ L
Sbjct: 200 QEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMS 238
Score = 28.1 bits (63), Expect = 6.1
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELM 77
+EE ++E + E++ +E E EE++ E L+ M
Sbjct: 200 QEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEM 237
Score = 28.1 bits (63), Expect = 6.1
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
++ +EE EKE + +++ +E E EE++ E
Sbjct: 197 ELLQEEYEKEVKAEKKRQELERVEEKKLE 225
Score = 28.1 bits (63), Expect = 6.9
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEE 59
+++ +E E+E + E++ +E E EE+
Sbjct: 196 QELLQEEYEKEVKAEKKRQELERVEEK 222
Score = 27.7 bits (62), Expect = 7.9
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R K+ + +EK +E E E +EE++ +++ +
Sbjct: 273 VRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQ 308
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 31.6 bits (71), Expect = 0.34
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
++R +KI +E++EE+E E +E+ EE+ ++ E E
Sbjct: 145 ERREEKIDEREDQEEQEREREEQTIEEQSDDSEHE 179
Score = 30.8 bits (69), Expect = 0.71
Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
+++ ++++K + +E EE +E E E EE+ +E E+QEE+ + + +E
Sbjct: 121 LIIRQEQIEKAR-QEREELEERMEWERREEKIDEREDQEEQEREREEQTIE 170
Score = 30.0 bits (67), Expect = 1.1
Identities = 12/37 (32%), Positives = 28/37 (75%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++R++ + +E+ +E+E++E++E E EE+ EEQ ++
Sbjct: 139 EERMEWERREEKIDEREDQEEQEREREEQTIEEQSDD 175
Score = 28.5 bits (63), Expect = 3.6
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ E E+++E+E + EE+ EE+ ++ E E
Sbjct: 150 KIDEREDQEEQEREREEQTIEEQSDDSEHE 179
Score = 28.1 bits (62), Expect = 5.9
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+D++ ++ + +E EE+ EE+ ++ E E E++E E E
Sbjct: 151 IDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETE 189
>gnl|CDD|198151 smart01083, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved
region at the N-terminal end of a family of proteins
referred to as CIRs (CBF1-interacting co-repressors).
CBF1 (centromere-binding factor 1) acts as a
transcription factor that causes repression by binding
specifically to GTGGGAA motifs in responsive promoters,
and it requires CIR as a co-repressor. CIR binds to
histone deacetylase and to SAP30 and serves as a linker
between CBF1 and the histone deacetylase complex.
Length = 37
Score = 28.7 bits (65), Expect = 0.34
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEE 59
K K++ E++ E+E+++ EE +E E+E
Sbjct: 8 KNQKRVWKAEQKAEEEKKKIEERRKEIEKE 37
Score = 28.7 bits (65), Expect = 0.37
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
K K + E+K EEE+++ EE +E E++
Sbjct: 8 KNQKRVWKAEQKAEEEKKKIEERRKEIEKE 37
Score = 27.5 bits (62), Expect = 0.92
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEE 64
+ + EQ+ EEE+++ EE ++E
Sbjct: 11 KRVWKAEQKAEEEKKKIEERRKE 33
Score = 26.3 bits (59), Expect = 2.5
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEEE 65
+ E++ +EE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 31.4 bits (72), Expect = 0.35
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE+K +EQ EE E E E+++E +
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEAD 28
Score = 30.7 bits (70), Expect = 0.66
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
M EE++ +E+ EE E E E++E+ +E
Sbjct: 1 MSNEEQKTPQEQVSEEIEAEVEQQEEADE 29
Score = 30.7 bits (70), Expect = 0.77
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K +E+ EE + E E++EE +E + E+
Sbjct: 7 KTPQEQVSEEIEAEVEQQEEADEAELED 34
Score = 30.3 bits (69), Expect = 0.95
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
++ K +E+ +E E + E++EE +E E ++E
Sbjct: 4 EEQKTPQEQVSEEIEAEVEQQEEADEAELEDE 35
Score = 30.3 bits (69), Expect = 0.95
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLEL 76
+E+ EE E E E++EE +E E E+E + EL
Sbjct: 7 KTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAEL 46
Score = 29.1 bits (66), Expect = 2.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE++ +E+ EE E E E++EE +E
Sbjct: 3 NEEQKTPQEQVSEEIEAEVEQQEEADEA 30
Score = 28.3 bits (64), Expect = 3.8
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E++ +E+ +E E E E++EE E E
Sbjct: 4 EEQKTPQEQVSEEIEAEVEQQEEADEAE 31
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 31.7 bits (72), Expect = 0.37
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 9 SALGGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
S L V I ++ R+ D V +++ EE E + E+E EEEEEE+ + E E
Sbjct: 36 SELAEVDGIGNALAARIKAD---VGGLEVSEETEAEVEDEGGEEEEEEDADVETE 87
Score = 29.8 bits (67), Expect = 1.6
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE + E E E EEEEEE+ + E E
Sbjct: 62 SEETEAEVEDEGGEEEEEEDADVETE 87
Score = 29.4 bits (66), Expect = 1.9
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
EE E E E++ EEEEEE+ + + E
Sbjct: 62 SEETEAEVEDEGGEEEEEEDADVETE 87
Score = 29.4 bits (66), Expect = 1.9
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E+ E E E+E EEEEEE+ + E
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVE 85
Score = 29.0 bits (65), Expect = 2.5
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
E EE E E ++E EEEEEE+ E
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVE 85
Score = 29.0 bits (65), Expect = 2.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
E EE E E E+E EEEEE++ + T+
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETE 87
Score = 28.7 bits (64), Expect = 3.9
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+IK E EE + E E+E EEEE+E+
Sbjct: 51 RIKADVGGLEVSEETEAEVEDEGGEEEEEEDA 82
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 32.5 bits (74), Expect = 0.38
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
DD E E ++ E + E + E+ EE+EQE++
Sbjct: 653 DDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDD 690
Score = 29.5 bits (66), Expect = 3.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R +++ EEE+E + EE +++E+E E E+ E E
Sbjct: 639 SRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESE 674
Score = 29.5 bits (66), Expect = 3.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+E++ EE + +E+E E E+ E E E
Sbjct: 650 EDEDDLEETDDDEDECEAIEDSESESE 676
Score = 29.1 bits (65), Expect = 4.0
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
+ D + + E+ E + E + E+ EE+E+E++ + E K +
Sbjct: 655 LEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVR 705
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 31.1 bits (71), Expect = 0.38
Identities = 15/44 (34%), Positives = 29/44 (65%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
K+ +E++++ + E+EE+E++ ++QE EF K + LE LQ
Sbjct: 85 KLPRFQEQEKKRMKAEKEEQEQKHQKQEREFLAKQEENLEEALQ 128
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 32.1 bits (74), Expect = 0.39
Identities = 9/32 (28%), Positives = 20/32 (62%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+I ++EE +E+ + +E EE+E++ E+
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEK 540
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 31.8 bits (73), Expect = 0.39
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E + EE EEE EEE
Sbjct: 33 PEPAAPPPEPPEPEEVPEEEAAPLTEEE 60
Score = 30.3 bits (69), Expect = 1.2
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E E E EE EEE
Sbjct: 26 PPPEPPPPEPAAPPPEPPEPEEVPEEE 52
Score = 29.9 bits (68), Expect = 1.6
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E E E E EE +EE
Sbjct: 27 PPEPPPPEPAAPPPEPPEPEEVPEEEAA 54
Score = 28.0 bits (63), Expect = 6.1
Identities = 11/26 (42%), Positives = 11/26 (42%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
E E EE EEE EEE E
Sbjct: 38 PPPEPPEPEEVPEEEAAPLTEEELEA 63
Score = 27.6 bits (62), Expect = 9.8
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E + E E EE EE+
Sbjct: 28 PEPPPPEPAAPPPEPPEPEEVPEEEAAP 55
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 32.1 bits (73), Expect = 0.40
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K + + EE E + +EE+ ++EE E++Q+E+
Sbjct: 382 TKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQ 419
Score = 31.7 bits (72), Expect = 0.57
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEE----EEEEEEEEEQEEE 65
K++ ++K + + E+ E + +EE EE E++++EQ +E
Sbjct: 382 TKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADE 422
Score = 31.3 bits (71), Expect = 0.63
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 11/49 (22%)
Query: 28 DDKRVKKIK---------MKEEEEEKEE--EEQEEEEEEEEEEEEQEEE 65
DKR + +K K+ E K+E +E E + +EE+ +QEE
Sbjct: 364 GDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEEN 412
Score = 29.8 bits (67), Expect = 2.0
Identities = 11/34 (32%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 34 KIKMKEEE---EEKEEEEQEEEEEEEEEEEEQEE 64
+ K KEE+ EE E++++E+ +E++E+ ++ E
Sbjct: 399 EAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 29.8 bits (67), Expect = 2.4
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 30 KRVKKIKMKEEEEE---KEEEEQEEEEEEEEEEEEQEEE 65
VK EE E KEE+ ++EE E++++E+ E++
Sbjct: 386 GEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Score = 29.4 bits (66), Expect = 2.5
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KK+ ++E + EE + + +EE+ ++EE E++
Sbjct: 379 QDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKK 415
Score = 28.6 bits (64), Expect = 4.7
Identities = 8/27 (29%), Positives = 23/27 (85%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+EE+ K+EE +++++E+ +E++E+ ++
Sbjct: 403 KEEKLKQEENEKKQKEQADEDKEKRQK 429
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 31.5 bits (72), Expect = 0.40
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
VDDK + EEEK E++QE EE E +
Sbjct: 141 VDDK-------PKIEEEKAEKDQEPEESETKLSN 167
Score = 28.8 bits (65), Expect = 2.5
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++ K EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 27.7 bits (62), Expect = 6.7
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCL 74
+++ + EE++ E+++E EE E + K K L
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKVHKSL 175
Score = 27.3 bits (61), Expect = 8.5
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
++ + +EE+ ++++E EE E + KS
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSNGPKVHKS 174
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 31.1 bits (71), Expect = 0.40
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KK + KEE E ++ E+E E+ ++EEE +E +
Sbjct: 79 KKNE-KEERELRKRAEKEALEQAKKEEELREAK 110
Score = 26.8 bits (60), Expect = 9.2
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 29 DKRVKK----IKMKEEEEEKEEEEQEEEEEEEE 57
K+ +K ++ + E+E E+ ++EEE E +
Sbjct: 78 WKKNEKEERELRKRAEKEALEQAKKEEELREAK 110
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 32.2 bits (73), Expect = 0.41
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
++ + E+EEE + +E +EEE+E++ QEEE + + EL +
Sbjct: 252 EEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSE 302
Score = 31.5 bits (71), Expect = 0.73
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
+K +KK K + EE EKE +E E + E EEEEEEQ E+ K
Sbjct: 328 EKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKL 369
Score = 31.1 bits (70), Expect = 0.94
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
+ + I EE + +E + +E+ ++ E + +E+ +
Sbjct: 184 ENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE 224
Score = 31.1 bits (70), Expect = 1.1
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ--EEEFYTKSPKCLELMLQC 80
+ +K+ +EEEE+ E+ +++ E+ EEE ++ E E + + K E L+
Sbjct: 346 KELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 400
Score = 29.6 bits (66), Expect = 2.8
Identities = 15/37 (40%), Positives = 26/37 (70%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + + ++K+E+EE EE E+E +E E + E E+EEE
Sbjct: 323 ELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEE 359
Score = 29.2 bits (65), Expect = 4.0
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ K+K +EEE E+E +EE E EEEQ
Sbjct: 793 KEEKLKAQEEELRALEEELKEEAELLEEEQLLI 825
Score = 28.4 bits (63), Expect = 5.9
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+R+KK+ + E + + EE + +E + +EQ ++
Sbjct: 174 ERLKKLIEETENLAELIIDLEELKLQELKLKEQAKK 209
Score = 28.4 bits (63), Expect = 6.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + ++ K KE ++EKEE E+ E+E +E E + + EE
Sbjct: 314 EEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEE 356
Score = 28.4 bits (63), Expect = 6.1
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+KIK KEEEEEK ++EEEEEE+ E +E+E
Sbjct: 744 QKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKE 776
Score = 28.4 bits (63), Expect = 7.1
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
+ E EEKEE ++E ++E EEE++E
Sbjct: 976 VNLMAIAEFEEKEERYNKDELKKERLEEEKKELLR 1010
Score = 28.4 bits (63), Expect = 7.5
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
K++K E + E EEEE+E+ E+ +E+ E+ EEE K
Sbjct: 343 KELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAK 379
Score = 28.0 bits (62), Expect = 8.0
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
+R K++ + +EE E EE+EE ++E +
Sbjct: 961 ERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKER 1000
Score = 28.0 bits (62), Expect = 8.4
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
R ++ K ++++EEE + +E +EEE+E++ ++EE
Sbjct: 248 RDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEE 288
Score = 28.0 bits (62), Expect = 9.1
Identities = 6/37 (16%), Positives = 16/37 (43%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ + E + EE + +E + +E+ ++ E
Sbjct: 179 LIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQ 215
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 31.5 bits (72), Expect = 0.43
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KKIK EEE +K EE EE +E+ EE E++ E+
Sbjct: 1 KKIKQLEEELDKAEERLEEAQEKLEEAEKRAEK 33
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 32.0 bits (73), Expect = 0.44
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V+ + + K +EEE+ E++ EEEE E E+
Sbjct: 384 VIRGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKR 423
Score = 30.4 bits (69), Expect = 1.3
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
K+KEEE +E+E EEEE E E+ + ++ + LE
Sbjct: 396 KVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLE 435
Score = 29.7 bits (67), Expect = 2.5
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
+ +EEE+ E+E EEEE +E Y K K LE ++
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVE 432
Score = 28.5 bits (64), Expect = 6.0
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEE---EEEEEEQEE 64
+ K+K +E EKE E+EE E E+ ++ EE
Sbjct: 394 LSKVKEEERPREKEGTEEEERREITVYEKRIKKLEE 429
Score = 28.1 bits (63), Expect = 6.7
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ EE +E ++ EE E Q+EE
Sbjct: 611 DSEELRRAIEEWKKRFEERERRQKEED 637
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 31.8 bits (73), Expect = 0.44
Identities = 15/32 (46%), Positives = 25/32 (78%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
++ EEE EE E E+E+ EEE+EEE++E ++ +
Sbjct: 5 EKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 31.1 bits (71), Expect = 0.72
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
K EEE +E E ++E+ EEE+EEEE+E F
Sbjct: 2 GFFEKLEEELEELEAEKEKIEEEDEEEEKEGWF 34
Score = 29.1 bits (66), Expect = 3.0
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EK EEE EE E E+E+ EE++EE
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEE 27
Score = 29.1 bits (66), Expect = 3.2
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
+ +++E E EKE+ E+E+EEEE+E E
Sbjct: 5 EKLEEELEELEAEKEKIEEEDEEEEKEGWFE 35
Score = 29.1 bits (66), Expect = 3.3
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
K++EE EE E E+++ EEE+EEEE+E E +
Sbjct: 6 KLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQG 40
Score = 28.0 bits (63), Expect = 7.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
+K ++++ E E+EK EEE EEEE+E E
Sbjct: 5 EKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
>gnl|CDD|219905 pfam08564, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic
protein kinases. This domains corresponds to the C
terminal domain whose function is unclear. It is found
C terminal to the Hsp90 chaperone (Heat shocked protein
90) binding domain pfam08565 and the N terminal kinase
binding domain of Cdc37 pfam03234.
Length = 89
Score = 30.0 bits (68), Expect = 0.44
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K E E++ +E +EE EEE E+EE EEE
Sbjct: 57 PNAKIEGEKEFKELEEEYNEEEAEKEEIEEE 87
Score = 29.2 bits (66), Expect = 0.70
Identities = 16/30 (53%), Positives = 23/30 (76%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K++ E+E KE EE+ EEE E+EE E+E+E
Sbjct: 60 KIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 28.1 bits (63), Expect = 2.0
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
K KE +E +EE +EE E+EE EEE+
Sbjct: 60 KIEGEKEFKELEEEYNEEEAEKEEIEEED 88
Score = 27.7 bits (62), Expect = 2.9
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEE 59
V + K + + KE EEE EEE E+EE EEE+E
Sbjct: 56 VPNAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 26.2 bits (58), Expect = 7.7
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
KI+ ++E +E EEE EEE E+EE EEE E
Sbjct: 60 KIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 31.5 bits (72), Expect = 0.45
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+R K+ + K +++K +E +++E+ ++ E EE + E
Sbjct: 11 RRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNE 46
Score = 28.8 bits (65), Expect = 2.8
Identities = 9/40 (22%), Positives = 23/40 (57%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+K + K++ +E +++E ++ E EE + E+ + +P
Sbjct: 18 RKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPI 57
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 31.9 bits (73), Expect = 0.48
Identities = 7/38 (18%), Positives = 27/38 (71%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
D + +++ K ++E ++++ ++ +++EE++++E E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEK 585
Score = 28.8 bits (65), Expect = 4.1
Identities = 8/40 (20%), Positives = 26/40 (65%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V ++++ ++EE+E +E++ + +++EE++++E
Sbjct: 544 VWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKEL 583
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 30.8 bits (70), Expect = 0.49
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ KK K ++EEKE + EE +EEEE E++++
Sbjct: 98 KKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQ 133
Score = 30.0 bits (68), Expect = 0.95
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 30 KRVK---KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KR K K K K++ ++ ++E++E + EE ++EEE
Sbjct: 89 KRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEE 127
Score = 30.0 bits (68), Expect = 0.96
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ KK KEE+E + E+ +EEEE EE++QEE
Sbjct: 101 KKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEP 136
Score = 29.6 bits (67), Expect = 1.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ KK K ++E++E + EE +EEEE +E++
Sbjct: 97 KKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDK 132
Score = 28.1 bits (63), Expect = 4.0
Identities = 10/26 (38%), Positives = 20/26 (76%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E+ K+E E EE +++ EE++ ++EE
Sbjct: 56 DEKWKKETEDEEFQQKREEKKRKDEE 81
Score = 27.7 bits (62), Expect = 4.5
Identities = 9/30 (30%), Positives = 23/30 (76%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+++ +E+ +KE E++E +++ EE++ + EE
Sbjct: 52 LELMDEKWKKETEDEEFQQKREEKKRKDEE 81
>gnl|CDD|220714 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-binding protein.
Kin17_mid is the conserved central 169 residue region of
a family of Kin17 proteins. Towards the N-terminal end
there is a zinc-finger domain, and in human and mouse
members there is a RecA-like domain further downstream.
The Kin17 protein in humans forms intra-nuclear foci
during cell proliferation and is re-distributed in the
nucleoplasm during the cell cycle.
Length = 127
Score = 30.3 bits (69), Expect = 0.51
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
D+ + +K +EE +KE++E+ +EE E++ EEQ
Sbjct: 92 DRSPEALKRQEELRKKEKQEKTDEEREQKLLEEQ 125
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 31.4 bits (71), Expect = 0.51
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
K+ K K E+E E +E E+ E + E ++ EE Y +
Sbjct: 172 QYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDE 213
Score = 29.1 bits (65), Expect = 2.6
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEE--EEEEEEQEEE 65
V+K K K EEE KE+ + E+ ++EE+ +E
Sbjct: 94 VRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKE 129
Score = 28.0 bits (62), Expect = 6.4
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 5/41 (12%)
Query: 30 KRVKKIKMKE---EEEEKEEEEQE--EEEEEEEEEEEQEEE 65
R K K++E E+ + E+ ++EE+ +E Q +E
Sbjct: 94 VRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDE 134
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 32.0 bits (73), Expect = 0.52
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++ +KI+ +EE E+ E EE E+ E EE +EE
Sbjct: 325 LEELKEKIEALKEELEERETLLEELEQLLAELEEAKEEL 363
Score = 29.7 bits (67), Expect = 2.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
++ + +++ +EE E++ EE EE E +E
Sbjct: 350 EQLLAELEEAKEELEEKLSALLEELEELFEALREE 384
Score = 29.3 bits (66), Expect = 3.7
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + + E+ E EE +EE EE+ +E E
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELE 375
Score = 29.3 bits (66), Expect = 3.7
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+++E E+E EE + E EE EE EE QEE
Sbjct: 261 ELEEAEKEIEELKSELEELREELEELQEE 289
Score = 29.3 bits (66), Expect = 3.8
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ + +++ + EE E+ E EE +EE EE+ E
Sbjct: 330 EKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLE 372
Score = 28.9 bits (65), Expect = 5.2
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++ +++ EEE E+ +EE EE E+E EE + + EE
Sbjct: 242 EELEEELSRLEEELEELQEELEEAEKEIEELKSELEEL 279
Score = 28.5 bits (64), Expect = 6.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++++ +E+ E +EE EE E EE E+ E
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAEL 356
Score = 28.1 bits (63), Expect = 7.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ +++ EE E+ +E+ E +EE EE E EE
Sbjct: 312 EELENELEELEERLEELKEKIEALKEELEERETLLEE 348
Score = 27.8 bits (62), Expect = 9.6
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
++ K + EE E K E + E E EEE EE+ E+ LE ++
Sbjct: 905 EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLE---TELEREIE 952
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 32.0 bits (73), Expect = 0.53
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCL 74
+ K++ K E++ E +EE E E E E++ + L
Sbjct: 240 YELIKLRRKLYGEKRAERVREELREVEREREKKR-----RKLGIL 279
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 30.8 bits (69), Expect = 0.53
Identities = 15/36 (41%), Positives = 28/36 (77%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+R ++ + +EEE +E+EE+ + + EEEE++EQEE+
Sbjct: 70 RREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQ 105
Score = 30.1 bits (67), Expect = 0.91
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+ R K+ K K + EE+E++EQEE+E ++++EE E
Sbjct: 81 ERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAE 116
Score = 29.3 bits (65), Expect = 1.8
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
K ++ E++E+EEQE E+EE++ E+EE
Sbjct: 31 KRRQAREQREQEEQERREQEEQDRLEREE 59
Score = 28.1 bits (62), Expect = 4.6
Identities = 12/42 (28%), Positives = 27/42 (64%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R++ + +R + + ++EE+E+ E+E+++ E EE + EE
Sbjct: 26 RLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEE 67
Score = 27.8 bits (61), Expect = 5.7
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D+ ++ + EE+ E+E +EEE E+EE+
Sbjct: 53 DRLEREELKRRAAEERLRREEEARRQEEERAREKEEK 89
Score = 27.4 bits (60), Expect = 7.4
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+R + +++ EEE + +EE+ E+EE+ + + EEE
Sbjct: 62 RRAAEERLRREEEARRQEEERAREKEEKAKRKAEEE 97
Score = 27.4 bits (60), Expect = 8.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K + EE +EEE + +EEE E+EE+ +
Sbjct: 61 KRRAAEERLRREEEARRQEEERAREKEEKAKR 92
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 31.9 bits (72), Expect = 0.55
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E E E+ ++E E++EE++ EEE
Sbjct: 141 FNESESSLEDLSDDETEDDEEKKMEEEE 168
Score = 31.1 bits (70), Expect = 0.86
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
E+ ++E E++EE++ EEEE EE +
Sbjct: 147 SLEDLSDDETEDDEEKKMEEEEAGEEKESVEQA 179
Score = 30.7 bits (69), Expect = 1.3
Identities = 14/38 (36%), Positives = 28/38 (73%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
DD+ K+ KE + + EEE++E++E+E++++EE+ E
Sbjct: 277 DDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPE 314
Score = 29.6 bits (66), Expect = 2.5
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
++ +++ E+++E++ EEEE EE+E K
Sbjct: 149 EDLSDDETEDDEEKKMEEEEAGEEKESVEQATREK 183
Score = 29.6 bits (66), Expect = 2.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
+ + + E+ ++EEEEEE+E E+E
Sbjct: 104 SDGSDMDSEDSADDEEEEEEDESLEDEMIDDED 136
Score = 29.2 bits (65), Expect = 3.6
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+D K +K+E + K EEE EE++E+E++++E+E
Sbjct: 276 EDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEP 312
Score = 28.8 bits (64), Expect = 4.2
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+ +E E +EE++ EEEE +E+E
Sbjct: 148 LEDLSDDETEDDEEKKMEEEEAGEEKE 174
Score = 28.8 bits (64), Expect = 4.9
Identities = 8/40 (20%), Positives = 21/40 (52%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++D+ + + E E ++ ++E E++EE++ E
Sbjct: 127 LEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEE 166
Score = 28.8 bits (64), Expect = 4.9
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
DK K + + EE++EE+ E+E++++EEE +
Sbjct: 280 PDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMD 318
Score = 28.8 bits (64), Expect = 5.4
Identities = 11/38 (28%), Positives = 27/38 (71%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D+ + +K + + + +EE+E+++E+E++++EEE E
Sbjct: 278 DEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEA 315
Score = 28.4 bits (63), Expect = 6.1
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
E E +++ E++EE++ EEE+ E +
Sbjct: 145 ESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQ 178
Score = 28.0 bits (62), Expect = 8.0
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E+ + + + E+ ++EEEEEE E
Sbjct: 101 EDGSDGSDMDSEDSADDEEEEEEDESLE 128
Score = 28.0 bits (62), Expect = 8.1
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+ + E E+ EE++ EEEE E++E
Sbjct: 148 LEDLSDDETEDDEEKKMEEEEAGEEKES 175
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 31.5 bits (72), Expect = 0.57
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + EEE E++++ E+E
Sbjct: 258 LPAPPQPPEEEPPPPPPPPEDDDDPPEDE 286
Score = 31.1 bits (71), Expect = 0.77
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE E++++ E+EE++++
Sbjct: 265 PEEEPPPPPPPPEDDDDPPEDEEEQDD 291
Score = 30.8 bits (70), Expect = 1.00
Identities = 8/35 (22%), Positives = 16/35 (45%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R ++ + E+E E++++ E EEE
Sbjct: 254 RATRLPAPPQPPEEEPPPPPPPPEDDDDPPEDEEE 288
Score = 30.8 bits (70), Expect = 1.1
Identities = 6/29 (20%), Positives = 15/29 (51%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EE+ E++++ E++EE+
Sbjct: 261 PPQPPEEEPPPPPPPPEDDDDPPEDEEEQ 289
Score = 30.0 bits (68), Expect = 1.9
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E+ ++ E+EEE+++ E+
Sbjct: 269 PPPPPPPPEDDDDPPEDEEEQDDAEDRA 296
Score = 30.0 bits (68), Expect = 1.9
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE E++++ E+E+E++
Sbjct: 264 PPEEEPPPPPPPPEDDDDPPEDEEEQD 290
Score = 29.2 bits (66), Expect = 3.6
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +++ E+EEE+++ E+ EE
Sbjct: 273 PPPPEDDDDPPEDEEEQDDAEDRALEE 299
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This
family represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 29.9 bits (68), Expect = 0.57
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
R K++K +EE EKE EE + E E +E E E
Sbjct: 27 RAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAE 59
Score = 28.7 bits (65), Expect = 1.3
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYT 68
+V + ++ + ++K+ +EE E+E +E + E E +E E E
Sbjct: 17 AEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHSG 62
Score = 26.8 bits (60), Expect = 6.5
Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 30 KRVKKIKMKEEEEEKEEE----------EQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
K +++ + + E E KE E E++ E+E EE+ +E + F ++++L
Sbjct: 40 KEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDELKRSFNKNKEAVVQMLLS 99
Query: 80 C 80
Sbjct: 100 K 100
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 30.9 bits (70), Expect = 0.58
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
D + K ++ EE E+E +E++EEEE++E +
Sbjct: 95 TEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDS 134
Score = 28.6 bits (64), Expect = 3.5
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++++E E +++E +E+E+++E EE+
Sbjct: 144 EDDDEIVEILIEDDEVDEDEDDDEDEEDE 172
Score = 28.6 bits (64), Expect = 3.7
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KEEEE+ E + ++E ++E+E++++ E
Sbjct: 124 KEEEEDDEVDSLDDENDDEDEDDDEIVE 151
Score = 27.4 bits (61), Expect = 7.4
Identities = 9/33 (27%), Positives = 24/33 (72%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++ E++EE+E++E + ++E ++E+E ++E
Sbjct: 117 ELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEI 149
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 31.8 bits (72), Expect = 0.59
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEE-----EEEEEEQEEEFY----TKSPKCLELMLQC 80
K+ K K ++E K E E E E + EE+ + K P ++ M +
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKVDNMTRI 857
Query: 81 SPRAS 85
P+ S
Sbjct: 858 LPQQS 862
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 31.7 bits (73), Expect = 0.60
Identities = 17/47 (36%), Positives = 35/47 (74%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
D++++ ++ +EEE EK+E+E E++++E E++EE+ EE + + LE
Sbjct: 99 DRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145
Score = 30.1 bits (69), Expect = 1.7
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 4/48 (8%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEE----EEEEEEQEEEFYTKSPKCLEL 76
K++ KEE +++ E E+ EEE E+E E++++E K + EL
Sbjct: 89 KRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEEL 136
Score = 27.8 bits (63), Expect = 9.0
Identities = 15/34 (44%), Positives = 26/34 (76%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
+K+ K+++ K++E EK+EEE EE EE+ +E E+
Sbjct: 113 EKKEKELEQKQQELEKKEEELEELIEEQLQELER 146
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 31.6 bits (72), Expect = 0.60
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 14/63 (22%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRASILL-INMALTLFC 97
EE ++EE+++E++ ++ EE ++ EEF R +L +N AL
Sbjct: 68 SEESDEEEDDEEDDNDDSEENKDTVEEFP-------------KARDEVLEQLNQALNESS 114
Query: 98 FRL 100
L
Sbjct: 115 LAL 117
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 31.0 bits (70), Expect = 0.61
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++IK +E EEE E E EE EE EE ++ E
Sbjct: 3 EEIKNEEVEEEVEATETEETVEEVVEETPEKSE 35
Score = 30.2 bits (68), Expect = 0.84
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE-------EQEEEFYTK 69
+ +K +++EE E E EE EE EE E+ E+ +EF K
Sbjct: 3 EEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENK 49
Score = 30.2 bits (68), Expect = 0.88
Identities = 16/34 (47%), Positives = 19/34 (55%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
M EE + +E EE+ E E EE EE EE KS
Sbjct: 1 MSEEIKNEEVEEEVEATETEETVEEVVEETPEKS 34
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 29.5 bits (67), Expect = 0.63
Identities = 13/27 (48%), Positives = 21/27 (77%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E E EE+E E EEE++++E++EEE+
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEY 43
Score = 28.3 bits (64), Expect = 1.8
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E EE E E EEE++++E+EEE+ E
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEEYEL 45
Score = 27.9 bits (63), Expect = 2.7
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
E E +E+E E EEE++++E+E+EE
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEE 42
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 31.5 bits (72), Expect = 0.63
Identities = 15/43 (34%), Positives = 24/43 (55%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R +++KR + +++E E E E +E+ E E EEE EE
Sbjct: 528 RRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEA 570
Score = 28.1 bits (63), Expect = 8.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
++ R + +++ E EEK E E EEE EE EE
Sbjct: 539 AEELRERAAELEAEAEEKREAAAEAEEEAEEAREE 573
Score = 28.1 bits (63), Expect = 9.2
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
H +++ R + +++ E E+ EEE +E EE E E+ E E
Sbjct: 466 HVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE 508
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 31.3 bits (71), Expect = 0.66
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 34 KIKMKEEEE--------EKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRAS 85
K K E+E EKEEEEQ ++EEEE+Q + K EL P A
Sbjct: 137 KEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQALLDELETSTLPAAE 196
Query: 86 IL 87
++
Sbjct: 197 LI 198
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 31.2 bits (71), Expect = 0.69
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 39 EEEEEKEEEEQEEEE--------EEEEEEEEQEEEFYTKS 70
EEEEE EE E+E EE + EE +++EE +S
Sbjct: 152 EEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRS 191
Score = 30.0 bits (68), Expect = 1.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
EEE E++ +++ + EE +EQEE
Sbjct: 160 MEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 29.3 bits (66), Expect = 3.0
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E EEE EE+ + + + EE +E+E
Sbjct: 158 EEMEEELEEDAADRDARKRAAEEAKEQE 185
Score = 29.3 bits (66), Expect = 3.4
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + E E E EEEEEE EE EE+ EE
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEE 166
Score = 28.9 bits (65), Expect = 4.1
Identities = 6/31 (19%), Positives = 19/31 (61%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+ +++E+ +++ ++ EE +E+EE +
Sbjct: 160 MEEELEEDAADRDARKRAAEEAKEQEELRRR 190
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 31.3 bits (71), Expect = 0.71
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ K++K E+E+++EE + E EEEE +E E
Sbjct: 293 EKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPE 328
Score = 31.0 bits (70), Expect = 1.00
Identities = 14/44 (31%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEE-EEEEEEEEEEQEEEFYTKSPK 72
++ +EE EEKE+E+++ ++ E+E+E++E E +SP
Sbjct: 276 PSGERSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPV 319
Score = 29.4 bits (66), Expect = 3.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
R +++ +K K K + +K E+++E+EE E E EE ++ P+
Sbjct: 280 RSDSEEETEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPE 328
Score = 28.3 bits (63), Expect = 6.6
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+ K + +KEE EE+ + E+E E +E+ PK
Sbjct: 231 EKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDEPK 275
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 30.8 bits (69), Expect = 0.73
Identities = 10/38 (26%), Positives = 24/38 (63%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
K K K +++E +E++++ EE E + E++++ +S
Sbjct: 147 KTKSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQ 184
Score = 30.0 bits (67), Expect = 1.2
Identities = 13/38 (34%), Positives = 25/38 (65%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D R+K MK + + +++E QE++E+ EE E + E++
Sbjct: 137 DLNRLKPHMMKTKSKNQKQENQEKQEKLEESEIQSEKQ 174
Score = 27.7 bits (61), Expect = 6.7
Identities = 10/31 (32%), Positives = 23/31 (74%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K K + +++E +E++E+ EE E + E++E+
Sbjct: 146 MKTKSKNQKQENQEKQEKLEESEIQSEKQEQ 176
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 31.5 bits (72), Expect = 0.74
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 43 EKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
E++ EEE EE E+ E +E K ++L L+
Sbjct: 207 EEDPGNDEEEAREEVEKLESGDEEAELWRKFVDLSLE 243
>gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110). This
is a family that is found predominantly at the
C-terminus of Kelch-containing proteins. However, the
exact function of this region is not known.
Length = 99
Score = 29.6 bits (67), Expect = 0.75
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
E EEEEQ EE +E++
Sbjct: 67 RALEDEEEEQAGIEEVVSLAKEKDWGGGEGR 97
Score = 29.2 bits (66), Expect = 1.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEE 64
EE E+E+EE+ EE +E
Sbjct: 64 EELRALEDEEEEQAGIEEVVSLAKE 88
Score = 27.7 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
EE+ E +EE E+EEEEQ S
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLA 86
Score = 26.5 bits (59), Expect = 7.6
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 7/42 (16%)
Query: 30 KRVKKIK-----MKEE--EEEKEEEEQEEEEEEEEEEEEQEE 64
K++K + EE E +EE E+EEEE+ E+
Sbjct: 42 LSGKELKKDAFDLAEERYWELREELRALEDEEEEQAGIEEVV 83
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 30.6 bits (70), Expect = 0.78
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
KRV +++ K E EK EEE+ + EE+ +E
Sbjct: 141 KRVAELEAKLEAIEKREEEERQIEEKRHADE 171
Score = 29.9 bits (68), Expect = 1.3
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEE--EEEEQEEE 65
+ +KK++ ++EE EK E E + E E EEEE++ E
Sbjct: 127 QEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIE 164
Score = 27.6 bits (62), Expect = 8.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ E E + E E+ EEEE + EE+ +E
Sbjct: 142 RVAELEAKLEAIEKREEEERQIEEKRHADE 171
Score = 27.2 bits (61), Expect = 8.8
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 28 DDKRVKKIKMKEEEEEKEE-EEQEEEEEEEEEEEEQEEE 65
+ + + + +E E+ E E + E E+ EEEE Q EE
Sbjct: 127 QEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEE 165
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 31.6 bits (72), Expect = 0.79
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+R +K K E+ ++ E ++ E+E++E++E ++
Sbjct: 1354 RRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.6 bits (67), Expect = 2.6
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 20 SQCHR---VVVDD-KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ + V D + K K+ EEEE EE+ E ++E++EEE +
Sbjct: 1038 KELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDEDDEEELGAAVSY 1088
Score = 29.6 bits (67), Expect = 2.7
Identities = 7/30 (23%), Positives = 21/30 (70%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K K + +++++ E ++ E+E++E+ E++
Sbjct: 1358 KKKSDSSSEDDDDSEVDDSEDEDDEDDEDD 1387
Score = 28.9 bits (65), Expect = 5.3
Identities = 7/33 (21%), Positives = 22/33 (66%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ + K+ + E+++ E ++ E+E++E +E+
Sbjct: 1354 RRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDED 1386
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 29.8 bits (67), Expect = 0.79
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEE 55
K K+ K+EEE++EE + +EEE
Sbjct: 88 KVFNKLTSKKEEEKEEEIPEPTKEEE 113
Score = 27.9 bits (62), Expect = 4.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 44 KEEEEQEEEEEEEEEEEEQEEEFYTK 69
K ++EEE+EEE E +EEE +
Sbjct: 92 KLTSKKEEEKEEEIPEPTKEEELLGE 117
Score = 27.1 bits (60), Expect = 8.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 43 EKEEEEQEEEEEEEEEEE 60
+KEEE++EE E +EEE
Sbjct: 96 KKEEEKEEEIPEPTKEEE 113
Score = 26.7 bits (59), Expect = 9.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEE 57
K+ ++EE++EEE E +EEE
Sbjct: 92 KLTSKKEEEKEEEIPEPTKEEE 113
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 30.3 bits (69), Expect = 0.81
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ E+K +E +EE +EEE++ EE
Sbjct: 37 ENALEKKLLDELDEELDEEEDDRFLEE 63
Score = 28.8 bits (65), Expect = 3.4
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+D KK + + +EEE+E E +E E E
Sbjct: 4 NDILRKKGILPPKPPSPKEEEEEALELAIQEAHENALE 41
Score = 27.6 bits (62), Expect = 7.3
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
++ I+ E +++ E +EE +EEE+++ E Y
Sbjct: 25 EEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEY 64
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 31.1 bits (70), Expect = 0.81
Identities = 6/35 (17%), Positives = 12/35 (34%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKC 73
++ ++ E E+E E E + F
Sbjct: 220 QQAPSPNTQQAVEHEDEPTEPEREGPPFPGHRSHS 254
Score = 29.9 bits (67), Expect = 1.9
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ Q+ E E+E E + E
Sbjct: 218 TPQQAPSPNTQQAVEHEDEPTEPEREG 244
Score = 29.6 bits (66), Expect = 2.5
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
++ ++ E E+E E E E +S
Sbjct: 220 QQAPSPNTQQAVEHEDEPTEPEREGPPFPGHRSH 253
Score = 29.6 bits (66), Expect = 2.8
Identities = 5/26 (19%), Positives = 8/26 (30%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
E +Q + E+ EE
Sbjct: 152 PESHNPSPNQQPSSFLQPSHEDSPEE 177
Score = 29.2 bits (65), Expect = 3.3
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ ++ E E+E E E E
Sbjct: 217 PTPQQAPSPNTQQAVEHEDEPTEPERE 243
Score = 29.2 bits (65), Expect = 3.6
Identities = 4/28 (14%), Positives = 5/28 (17%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E E +Q F
Sbjct: 139 SPPSHPGPHEPAPPESHNPSPNQQPSSF 166
Score = 28.4 bits (63), Expect = 5.6
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E Q+ + E+ EE
Sbjct: 151 PPESHNPSPNQQPSSFLQPSHEDSPEE 177
Score = 28.0 bits (62), Expect = 6.7
Identities = 7/27 (25%), Positives = 13/27 (48%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+ + E + E EE E+E+ +
Sbjct: 63 EQGHRQTESDTETAEESRHGEKEERGQ 89
Score = 28.0 bits (62), Expect = 8.3
Identities = 3/26 (11%), Positives = 5/26 (19%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
E E ++ Q
Sbjct: 145 GPHEPAPPESHNPSPNQQPSSFLQPS 170
Score = 27.6 bits (61), Expect = 9.3
Identities = 6/26 (23%), Positives = 9/26 (34%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ Q E+ EE E E
Sbjct: 159 PNQQPSSFLQPSHEDSPEEPEPPTSE 184
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 31.2 bits (70), Expect = 0.82
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+EE +EK +++Q + E E E +
Sbjct: 56 QEEPDEKTQDQQSLSDVERAEPEVEASR 83
Score = 28.5 bits (63), Expect = 5.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +EE +E+ Q+++ + E E E E
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVE 80
>gnl|CDD|192481 pfam10197, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved
region at the N-terminal end of a family of proteins
referred to as CIRs (CBF1-interacting co-repressors).
CBF1 (centromere-binding factor 1) acts as a
transcription factor that causes repression by binding
specifically to GTGGGAA motifs in responsive promoters,
and it requires CIR as a co-repressor. CIR binds to
histone deacetylase and to SAP30 and serves as a linker
between CBF1 and the histone deacetylase complex.
Length = 37
Score = 27.6 bits (62), Expect = 0.84
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
+K + E E+K EEQ++ EE +E EE+
Sbjct: 5 GLMKNQEKVWEAEQKALEEQKKIEELRKEIEEE 37
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 29.7 bits (67), Expect = 0.87
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ KR + K + EE ++EE E EE EE Q EE
Sbjct: 87 EKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEE 124
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 31.1 bits (71), Expect = 0.89
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K + + +EEE + E E E + ++E+E EE
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEE 262
Score = 30.7 bits (70), Expect = 1.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K++K+ EE EE+ + E E E + ++EQE
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGS 259
Score = 30.4 bits (69), Expect = 1.7
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 33 KKIKMKEEEEEKEEEEQEE-EEEEEEEEEEQEEEFYTK 69
KK+K E EE+EEE E E E + +QE+E T+
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTE 261
Score = 29.2 bits (66), Expect = 3.8
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
+ +EE + + E E + ++E+E EE+ S
Sbjct: 234 EREEETDVEIETTSETKGTKQEQEGSTEEDPSLFS 268
Score = 28.4 bits (64), Expect = 5.6
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
++ V+ E + K+E+E EE+ EE+E+ T+
Sbjct: 237 EETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLD 281
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 29.9 bits (66), Expect = 0.91
Identities = 20/44 (45%), Positives = 24/44 (54%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSP 82
EEEEE E EE+ EEE E EEE E+E E + E + P
Sbjct: 65 EEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEP 108
Score = 28.8 bits (63), Expect = 2.5
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ ++E EEEE+ E EEE EEE E EEE
Sbjct: 59 DPDDEPEEEEEPEPEEEGEEEPEPEEE 85
Score = 28.4 bits (62), Expect = 2.8
Identities = 18/27 (66%), Positives = 20/27 (74%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E EEE+E E +EE EEE E EEE EEE
Sbjct: 63 EPEEEEEPEPEEEGEEEPEPEEEGEEE 89
>gnl|CDD|216110 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 30.9 bits (71), Expect = 0.92
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLEL 76
K K +E + E E E E E EEE ++ P LEL
Sbjct: 297 KRKRQEAAEAEAEAAEAEAAAEPEEESWDDVLPVDPLELEL 337
>gnl|CDD|222667 pfam14308, DnaJ-X, X-domain of DnaJ-containing. IN certain plant
and yeast proteins, the DnaJ-1 proteins have a
three-domain structure. The x-domain lies between the
N-terminal DnaJ and the C-terminal Z domains. The exact
function is not known.
Length = 204
Score = 30.2 bits (69), Expect = 0.95
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
+ + EE ++ E++ E EEE E EE + K L
Sbjct: 99 LDAQSTMEEMKKLEEKGGELTEEELAEMEE---KVTGKILAAAWA 140
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 31.1 bits (70), Expect = 0.98
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKC 73
E+ + E EE E EEE E+ E+E C
Sbjct: 371 EKMEIENRNPEESEHEEEVEDYEDENDHSKRIC 403
Score = 31.1 bits (70), Expect = 1.0
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++D V K ++ E+ E E EE E EE+ E++
Sbjct: 352 ILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDY 392
Score = 30.3 bits (68), Expect = 1.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEE 61
K E E + EE E EEE E+ E+E
Sbjct: 372 KMEIENRNPEESEHEEEVEDYEDE 395
Score = 30.3 bits (68), Expect = 1.5
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEE 59
KM+ E EE E EEE E+ E+E
Sbjct: 372 KMEIENRNPEESEHEEEVEDYEDE 395
Score = 29.6 bits (66), Expect = 2.7
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
+ + E E EE + EEE E+ E+E
Sbjct: 363 QFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Score = 28.8 bits (64), Expect = 4.2
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
EK E E EE E EEE ++ E
Sbjct: 368 LYFEKMEIENRNPEESEHEEEVEDYE 393
Score = 28.4 bits (63), Expect = 6.1
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEE 64
E+ E E EE E EEE E+ ++E
Sbjct: 371 EKMEIENRNPEESEHEEEVEDYEDE 395
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 29.4 bits (67), Expect = 0.99
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
++ EEEE+ E E EEE EE E E +EE
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEE 29
Score = 28.6 bits (65), Expect = 1.8
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ +E++E +E E+E EE E E EEE EE
Sbjct: 3 LEEEEDDEMRELAEEELEELEAELEEELEEL 33
>gnl|CDD|235216 PRK04057, PRK04057, 30S ribosomal protein S3Ae; Validated.
Length = 203
Score = 30.2 bits (69), Expect = 1.1
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEE 59
+RV+ K K +E E +EE EE
Sbjct: 174 RRVEIRKSKVLARPEEVEAEEEVAVAAEEA 203
>gnl|CDD|177400 PHA02571, a-gt.4, hypothetical protein; Provisional.
Length = 109
Score = 29.3 bits (66), Expect = 1.1
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
M +E + EE EE EE E + + E
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNE 28
Score = 28.9 bits (65), Expect = 1.3
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCL 74
E + +E ++E EE E + E E K+ K L
Sbjct: 3 DESTDVEELTDEEVEELLSELQARNEAEAEKKAAKIL 39
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 31.1 bits (70), Expect = 1.1
Identities = 26/99 (26%), Positives = 47/99 (47%), Gaps = 14/99 (14%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQE---EEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRAS 85
D+ KK + +E+ + E+Q +++++EEEE+ EE+ K LEL+++
Sbjct: 3 DESDKKQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEEDAMLKGD--LELLVERIQDPD 60
Query: 86 ILLINMALTLFCFRLTLTATCKM--------FLRKFPFD 116
I L N +L + + ++T M FLR D
Sbjct: 61 IDLQNNSLNML-KEVIKSSTSSMTAVPKPLKFLRPNYLD 98
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 30.7 bits (70), Expect = 1.1
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRA 84
+++ EEKE+ +E ++EEEEEEEE ++ P LEL P
Sbjct: 328 EQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELELGYGLIPLV 374
Score = 29.9 bits (68), Expect = 2.3
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
+ K K ++ EE+++ E+ ++EEEEEEEE
Sbjct: 321 YLLSKRKEQQAEEKEKPAEEAKKEEEEEEEES 352
Score = 28.0 bits (63), Expect = 8.7
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK--CLEL 76
+ + +E++ EE+++ EE ++EEEE+EEE +EL
Sbjct: 322 LLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIEL 364
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 29.5 bits (66), Expect = 1.1
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 37 MKEEEEEKEEEEQE-----EEEEEEEEEEEQEEE 65
M+ E ++EE+ E+E E E+EEE
Sbjct: 74 MEATFMEIQKEERRSARMARLEDERELAREEEEE 107
Score = 29.1 bits (65), Expect = 1.5
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KEE E+E E EEEE++ +
Sbjct: 83 KEERRSARMARLEDERELAREEEEEKRK 110
Score = 27.9 bits (62), Expect = 3.7
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 28 DDKRVKKIKMKEEEEEKEEE-------EQEEEEEEEEEEEEQEE 64
+D + ++ E +KEE ++E E EEEEE+ +
Sbjct: 67 EDDALDNMEATFMEIQKEERRSARMARLEDERELAREEEEEKRK 110
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 30.7 bits (70), Expect = 1.1
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
KK++ K+ + EK+ E++E E+ +++ E
Sbjct: 407 SPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAA 443
Score = 29.1 bits (66), Expect = 3.4
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 17/70 (24%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE------------FYTKSP-----K 72
+R + K ++EE EK +++ E ++ + E T+ P K
Sbjct: 418 QRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPDPLGEKLARTEDPLEEAMK 477
Query: 73 CLELMLQCSP 82
L+ +LQ SP
Sbjct: 478 FLKPLLQLSP 487
Score = 28.4 bits (64), Expect = 6.9
Identities = 7/33 (21%), Positives = 21/33 (63%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
K+++K + K E++ ++EE ++ +++ E +
Sbjct: 412 KKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAK 444
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 30.6 bits (69), Expect = 1.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E +EE E +E EE+E E E
Sbjct: 246 DSEAGREESEGSDESEEDEAEATDGEG 272
Score = 30.6 bits (69), Expect = 1.3
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE E +E +E+E E + E E+ E
Sbjct: 251 REESEGSDESEEDEAEATDGEGEEGEM 277
Score = 30.2 bits (68), Expect = 1.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+ E EE + +E EE+E E + E
Sbjct: 245 EDSEAGREESEGSDESEEDEAEATDGE 271
Score = 29.8 bits (67), Expect = 2.0
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE E +E E++E E + E EE E +
Sbjct: 252 EESEGSDESEEDEAEATDGEGEEGEMD 278
Score = 28.3 bits (63), Expect = 7.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEE 65
+ ++ E EE E +E EE E E
Sbjct: 242 DNNEDSEAGREESEGSDESEEDEAE 266
Score = 27.9 bits (62), Expect = 8.1
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +E E +E EE+E E + E E
Sbjct: 247 SEAGREESEGSDESEEDEAEATDGEGE 273
Score = 27.9 bits (62), Expect = 9.3
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
++++ + E E EE E ++ EE
Sbjct: 237 DDDQPDNNEDSEAGREESEGSDESEE 262
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 30.6 bits (69), Expect = 1.1
Identities = 9/40 (22%), Positives = 26/40 (65%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
+++ + +++ E+E++ + E E +EE+E+ E +E ++
Sbjct: 79 EERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYL 118
Score = 27.9 bits (62), Expect = 8.4
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
+++++ ++++ + E E +EE+E+ E EE Q Y
Sbjct: 85 ELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNL 123
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 30.8 bits (69), Expect = 1.2
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 6/40 (15%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEE------EEEEEEQEEE 65
V + ++EEEE + EE++E E+E E+ EEE+EEE
Sbjct: 135 VPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEE 174
Score = 28.8 bits (64), Expect = 4.0
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 6/41 (14%)
Query: 38 KEEEEEKEEEEQEEEEEEEE------EEEEQEEEFYTKSPK 72
EEEE+ E E++EE E+E E+ E+EEE K+ K
Sbjct: 139 VLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMK 179
Score = 28.1 bits (62), Expect = 8.1
Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 4/62 (6%)
Query: 15 VSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEE----QEEEEEEEEEEEEQEEEFYTKS 70
V S+ DD+ + E + E + EEEEE E E++EE+Y K
Sbjct: 99 VRSRSTLWSLFHDDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKE 158
Query: 71 PK 72
P
Sbjct: 159 PG 160
>gnl|CDD|173487 PTZ00236, PTZ00236, mitochondrial import inner membrane translocase
subunit tim17; Provisional.
Length = 164
Score = 29.6 bits (67), Expect = 1.2
Identities = 11/62 (17%), Positives = 34/62 (54%), Gaps = 8/62 (12%)
Query: 3 RNCFKNSALGGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
R+ +N+ GG++ + + + ++ + + ++ ++Q+E E++ EEE+++
Sbjct: 110 RSAVRNAIFGGIL-LGIIELVSIGMN-------RRQMRTPRQQFQQQQEMEKQLEEEDKK 161
Query: 63 EE 64
E+
Sbjct: 162 EQ 163
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 30.6 bits (70), Expect = 1.2
Identities = 12/35 (34%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 32 VKKI-KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V+++ + EE+ + EE E EEEEE+++E++
Sbjct: 55 VEEVNSLSLEEQRERLEELAPELLEEEEEKKEEKK 89
Score = 29.8 bits (68), Expect = 1.9
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ V + ++E+ E EE E EEEEE++EE++
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKG 90
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 30.5 bits (69), Expect = 1.2
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K EE+E E E+ E E E E
Sbjct: 141 KTDEEKELLREVEELESRLATEPSPAPELE 170
Score = 30.1 bits (68), Expect = 1.5
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + + K E E+ E E E EEQ
Sbjct: 138 EYPKTDEEKELLREVEELESRLATEPSPAPELEEQLAL 175
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal
region/beta chain. The methionyl-tRNA synthetase
(metG) is a class I amino acyl-tRNA ligase. This model
describes a region of the methionyl-tRNA synthetase
that is present at the C-terminus of MetG in some
species (E. coli, B. subtilis, Thermotoga maritima,
Methanobacterium thermoautotrophicum), and as a
separate beta chain in Aquifex aeolicus. It is absent
in a number of other species (e.g. Mycoplasma
genitalium, Mycobacterium tuberculosis), while
Pyrococcus horikoshii has both a full length MetG and a
second protein homologous to the beta chain only.
Proteins hit by This model should called methionyl-tRNA
synthetase beta chain if and only if the model metG
hits a separate protein not also hit by This model
[Protein synthesis, tRNA aminoacylation].
Length = 137
Score = 29.3 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 33 KKI-KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
KKI ++K + +K+E++ E E+ E ++E + + K
Sbjct: 2 KKIEELKLKGAKKKEKKDEGEKALEPQKETITIDDFEK 39
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 30.5 bits (69), Expect = 1.3
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEE 61
E +K +EEQEE E+E EEE
Sbjct: 107 NYEADKLDEEQEERVEKEREEEL 129
Score = 28.9 bits (65), Expect = 3.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 44 KEEEEQEEEEEEEEEEEEQEE 64
E++EEEEEEEE+E +
Sbjct: 177 FRREKKEEEEEEEEDEALIKS 197
Score = 27.8 bits (62), Expect = 8.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 46 EEEQEEEEEEEEEEEEQEEE 65
++ EE+EE E+E E+E
Sbjct: 111 DKLDEEQEERVEKEREEELA 130
Score = 27.8 bits (62), Expect = 8.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 37 MKEEEEEKEEEEQEEEEEEE 56
K +EE++E E+E EEE
Sbjct: 111 DKLDEEQEERVEKEREEELA 130
Score = 27.8 bits (62), Expect = 9.0
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 30 KRVKKIKMKEEEEE-----------KEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
R +K + +EEEEE E EE ++E+ E+++E+ T SPK
Sbjct: 177 FRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPK 230
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is
known to localise at the desmosomes and is implicated
in anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines.
A common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 29.4 bits (66), Expect = 1.3
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+KR +I+ K EE+EK+E E+ +E+ E EE + ++
Sbjct: 34 EKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQL 71
Score = 29.4 bits (66), Expect = 1.4
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
++ R+ + + E E++ EEQE++E EE +E++E
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRE 61
Score = 27.1 bits (60), Expect = 6.9
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ +E+ + E EQ+ EE+E++E EE +E
Sbjct: 29 RLTSKEKRRAEIEQKLEEQEKQEREELRKE 58
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 30.7 bits (70), Expect = 1.3
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
++ K +EE + + QEE EEEEE
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 30.3 bits (69), Expect = 1.5
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
K+EEE E + +EE EEEEE +
Sbjct: 314 KQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 29.9 bits (68), Expect = 2.1
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS-PKCLELMLQCSPRA 84
++ + ++EE+ E + +EE EEEE+ LEL P
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLELELGYGLIPLV 359
Score = 28.8 bits (65), Expect = 5.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ +++EE E + +EE EE+EE
Sbjct: 307 WYLRRRSKQEEEAAAEAAKAQEEAAEEEEES 337
Score = 28.4 bits (64), Expect = 5.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+++ +EEE E + +EE EEEEE +
Sbjct: 308 YLRRRSKQEEEAAAEAAKAQEEAAEEEEESIND 340
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 30.1 bits (68), Expect = 1.3
Identities = 10/56 (17%), Positives = 27/56 (48%)
Query: 9 SALGGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ L G S ++ + + + EEE E+++ E ++ ++++EQ++
Sbjct: 52 AKLKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQ 107
Score = 30.1 bits (68), Expect = 1.5
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE EK++ E ++ ++++E++Q+EE
Sbjct: 84 EEEPEKDQAEAGKQLSQKQQEQQQQEE 110
Score = 28.6 bits (64), Expect = 4.1
Identities = 5/27 (18%), Positives = 21/27 (77%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ E+++ E +Q ++++E++++E+++
Sbjct: 86 EPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 30.5 bits (69), Expect = 1.3
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
K+ KK E ++K E+++++++E++E + E E + K+PK
Sbjct: 55 KKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPK 97
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 29.7 bits (67), Expect = 1.3
Identities = 8/32 (25%), Positives = 22/32 (68%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
+ ++++K ++ +KE++E ++ +E E+EE
Sbjct: 107 EGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
>gnl|CDD|221281 pfam11871, DUF3391, Domain of unknown function (DUF3391). This
domain is functionally uncharacterized. This domain is
found in bacteria. This presumed domain is typically
between 122 to 139 amino acids in length. This domain
is found associated with pfam01966.
Length = 127
Score = 29.2 bits (66), Expect = 1.4
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 17 ISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ S V +D + + + E + E + E +++ E E
Sbjct: 44 LRKSGVKYVWIDTSKSLDVPELKPPVEADAELEAEPPAPVKKKVSFEREL 93
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to
be DNA-binding and may be a transcription factor.
Length = 238
Score = 30.0 bits (68), Expect = 1.4
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 7/39 (17%)
Query: 36 KMKEEEEEKEEE-------EQEEEEEEEEEEEEQEEEFY 67
K+ EEE E++E E+EE++EE E EEE+EEE
Sbjct: 16 KLLEEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEV 54
Score = 29.7 bits (67), Expect = 1.6
Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 10/47 (21%)
Query: 30 KRVKKIKMKEEEEE---------KEEEEQEE-EEEEEEEEEEQEEEF 66
R+KK+ +E EE+ +EEE+ EE E EEEEEEEE + +F
Sbjct: 12 NRMKKLLEEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDF 58
Score = 28.9 bits (65), Expect = 2.8
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 12/39 (30%)
Query: 39 EEEEEKEEEEQEEEEEE------------EEEEEEQEEE 65
EEEE+ EE E EEEEEE +E E + EEE
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEE 73
Score = 28.5 bits (64), Expect = 4.6
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ E+++ E + EEE E+E + EE+ +
Sbjct: 58 FDDSEDDEPESDDEEEGEKELQREERLK 85
Score = 28.1 bits (63), Expect = 6.6
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E +E E ++EEE E+E + +E
Sbjct: 60 DSEDDEPESDDEEEGEKELQREERL 84
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 29.4 bits (67), Expect = 1.4
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 27 VDD---KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
++D KR KK K K++E E EE++++ EE +E+Q+
Sbjct: 76 LNDAYFKRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
>gnl|CDD|221165 pfam11680, DUF3276, Protein of unknown function (DUF3276). This
bacterial family of proteins has no known function.
Length = 123
Score = 29.2 bits (66), Expect = 1.4
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
K+ K ++ E + E+++ EE E E+ + E F
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEIF 118
>gnl|CDD|149439 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal.
This eukaryotic domain is found at the C-terminus of
26S proteasome regulatory subunits such as the
non-ATPase Rpn3 subunit which is essential for
proteasomal function. It occurs together with the
PCI/PINT domain (pfam01399).
Length = 68
Score = 28.1 bits (63), Expect = 1.4
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 38 KEEEEEKEEEEQEEEEEEEE-EEEEQEEEF 66
+++EEEK EE +E ++ E E +E E +
Sbjct: 37 EKKEEEKAEEARERDQLELELAKELSEGDL 66
Score = 27.7 bits (62), Expect = 1.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
DK K+ + EE E+++ E E +E E + +
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLD 67
Score = 26.1 bits (58), Expect = 7.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
VK ++ ++E+KEEE+ EE E ++ E E +E
Sbjct: 27 VKAMRYPPDKEKKEEEKAEEARERDQLELELAKE 60
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the
Pfam FliH model pfam02108, but is closely related to
the sequences identified by that model. Sequences
identified by this model are observed in flagellar
operons in an analogous position relative to other
flagellar operon genes.
Length = 255
Score = 30.2 bits (68), Expect = 1.4
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
V + + I + + E EQE +EE+E E+ E
Sbjct: 7 STKSVIPAQERGIIPLRQVTDVPETEQELADEEQEFEQILE 47
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 30.1 bits (68), Expect = 1.4
Identities = 10/46 (21%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+D+K + + + E++E E++EE +EE E++++ +
Sbjct: 323 LDEKSLSE-FLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKR 367
Score = 29.8 bits (67), Expect = 2.2
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+EEE +E + E E EE EE
Sbjct: 241 QEEESIDDELDVLREIEAEEAGIGPIEE 268
Score = 29.0 bits (65), Expect = 4.0
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ +E + E E EE EEE + +
Sbjct: 245 SIDDELDVLREIEAEEAGIGPIEEEVVDSQA 275
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 30.4 bits (68), Expect = 1.5
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
D+ ++ E++ E + +EE+ E+ +E + + Y P
Sbjct: 953 DEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRP 996
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 30.0 bits (67), Expect = 1.5
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+D+ V++I+ EE E EEE ++E+ E+++E+E + E
Sbjct: 111 EDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAE 148
Score = 28.1 bits (62), Expect = 7.0
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++V ++ + + +EEE+E EE +E EE E EEE ++E
Sbjct: 95 IIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDE 135
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 29.9 bits (68), Expect = 1.5
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+EE+E+K+ +EE++ +EE+E+ EE +
Sbjct: 95 EEEKEKKKAMSKEEKKAIKEEKEKLEEPY 123
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 29.9 bits (68), Expect = 1.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ + + +EE+ E++EE EE E +EE E
Sbjct: 220 ILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
>gnl|CDD|218197 pfam04661, Pox_I3, Poxvirus I3 ssDNA-binding protein.
Length = 263
Score = 30.0 bits (68), Expect = 1.6
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 17 ISSSQCHRVVVD-DKRVKKIKMKEEEEEKEEE------EQEEEEEEEEEEEEQ 62
I +C V+D D + + M E + E++ E ++E EEE+ EE
Sbjct: 206 IMERECSATVIDLDGESESVSMSETDTEEDIVRGLGVVELDDECIEEEDLEES 258
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 29.6 bits (67), Expect = 1.6
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYT 68
D+ V K + K+E+E+ E+ + E E+ E + + +T
Sbjct: 32 DRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSKFEFT 71
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 30.1 bits (67), Expect = 1.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
R + + EEEE E+E +++ + E+ +E E E K+ +
Sbjct: 370 QLRRRAASLSGEEEEPEDELKDDVDGEQADESEHETLALRKNAR 413
Score = 28.1 bits (62), Expect = 7.5
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+R EEEE ++E + + + E+ +E E + + +
Sbjct: 370 QLRRRAASLSGEEEEPEDELKDDVDGEQADESEHETLALRKNARQ 414
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 28.2 bits (63), Expect = 1.7
Identities = 5/29 (17%), Positives = 24/29 (82%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
M E EE +++++ E+++++++++++ +++
Sbjct: 44 MIEGEEPEDDDDDEDDDDDDDKDDKDDDD 72
Score = 27.8 bits (62), Expect = 2.2
Identities = 4/27 (14%), Positives = 23/27 (85%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE E+ +++E ++++++++++++ +++
Sbjct: 48 EEPEDDDDDEDDDDDDDKDDKDDDDDD 74
Score = 27.1 bits (60), Expect = 3.5
Identities = 4/31 (12%), Positives = 26/31 (83%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
I+ +E E++ ++E+ ++++++++++++ +++
Sbjct: 45 IEGEEPEDDDDDEDDDDDDDKDDKDDDDDDD 75
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2
and SpPhd1. This subfamily includes Class I histone
deacetylase (HDAC) Hos2 from Saccharomyces cerevisiae as
well as a histone deacetylase Phd1 from
Schizosaccharomyces pombe. Hos2 binds to the coding
regions of genes during gene activation, specifically it
deacetylates the lysines in H3 and H4 histone tails. It
is preferentially associated with genes of high activity
genome-wide and is shown to be necessary for efficient
transcription. Thus, Hos2 is directly required for gene
activation in contrast to other class I histone
deacetylases. Protein encoded by phd1 is inhibited by
trichostatin A (TSA), a specific inhibitor of histone
deacetylase, and is involved in the meiotic cell cycle
in S. pombe. Class 1 HDACs are Zn-dependent enzymes that
catalyze hydrolysis of N(6)-acetyl-lysine residues in
histone amino termini to yield a deacetylated histone
(EC 3.5.1.98).
Length = 311
Score = 30.1 bits (68), Expect = 1.7
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 95 LFCFRLTLTA--TCKMFLRKFPFDTQTCPLLV-GSFGYTSNDVKYKWQSETPV 144
L F L + A C F++ F P+LV G GYT +V W ET V
Sbjct: 263 LGQFNLNIKAHGACVKFVKSFGI-----PMLVVGGGGYTPRNVARAWCYETAV 310
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 30.2 bits (69), Expect = 1.7
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K + I + EEEEE+EE E+EE + E +
Sbjct: 217 KELVAILLGEEEEEEEEVEEEEAQASPAAEPATAQA 252
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 28.8 bits (63), Expect = 1.7
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
KE E+EK+ E+ E E+E++ E+ E E+E + P+
Sbjct: 61 KENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPE 95
>gnl|CDD|221753 pfam12753, Nro1, Nuclear pore complex subunit Nro1. In fission
yeast, this protein is a positive regulator of the
stability of Sre1N, the sterol regulatory
element-binding protein which is an ER membrane-bound
transcription factor that controls adaptation to low
oxygen-growth. In addition, the fission yeast Nro1 is a
direct inhibitor of a protein that inhibits SreN1
degradation, Ofd1 (an oxoglutamate deoxygenase). The
outcome of this reactivity is that Ofd1 acts as an
oxygen sensor that regulates the binding of Nro1 to Ofd1
to control the stability of Sre1N. Solution of the
structure of Nro1 reveals it to be made up of a number
of TPR coils.
Length = 401
Score = 30.2 bits (68), Expect = 1.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 259 LSVEAKGPKDLPDTYLEQNIRHYPLANNEAESVYSINEA 297
L+V++ K++ L+ + Y LA +AE Y + +A
Sbjct: 169 LTVDSSAEKEVNLLLLDTAKKVYELAEKDAELAYEVLQA 207
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45;
Provisional.
Length = 193
Score = 29.7 bits (66), Expect = 1.7
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
+ EE E++ EE E+EEE EE++ ++E ++ + K +
Sbjct: 42 IVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFD 80
Score = 28.2 bits (62), Expect = 4.7
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K +++E E+K E+ EE E++ EE EQEEE
Sbjct: 28 KKEVEEIPEQKPEDIVEELEDQPEEPPEQEEE 59
Score = 27.8 bits (61), Expect = 7.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+ E+ E++ EE E+EEE EEQ+ +
Sbjct: 40 EDIVEELEDQPEEPPEQEEENEEQKPK 66
Score = 27.4 bits (60), Expect = 8.4
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+++ E+ EE +++ EE E+EEE EE
Sbjct: 36 EQKPEDIVEELEDQPEEPPEQEEENEE 62
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 29.6 bits (67), Expect = 1.7
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQ 62
E E E E E EEE E++
Sbjct: 131 SVNMTECTGPEPEPEPEPEEEPEKK 155
Score = 29.6 bits (67), Expect = 1.8
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K K K++E+ +++ +E + +E+EEE +E
Sbjct: 178 FKFYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEP 211
Score = 29.2 bits (66), Expect = 2.1
Identities = 8/27 (29%), Positives = 10/27 (37%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E E E E EE+ E+
Sbjct: 128 PVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 29.2 bits (66), Expect = 2.3
Identities = 9/27 (33%), Positives = 10/27 (37%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
E E E E E EEE E+
Sbjct: 128 PVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 29.2 bits (66), Expect = 2.6
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEE 57
V + M E + E E E EEE E+
Sbjct: 129 VCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 28.8 bits (65), Expect = 2.8
Identities = 8/28 (28%), Positives = 9/28 (32%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E E E E E+E E
Sbjct: 126 CCPVCSVNMTECTGPEPEPEPEPEEEPE 153
Score = 28.5 bits (64), Expect = 4.3
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
K + K ++ +E +E+EEE++E
Sbjct: 183 PKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 28.1 bits (63), Expect = 5.3
Identities = 7/32 (21%), Positives = 19/32 (59%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
+ K+ + +++ +E + +E+EEE++E
Sbjct: 181 YKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPP 212
Score = 27.7 bits (62), Expect = 7.7
Identities = 7/35 (20%), Positives = 20/35 (57%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ K K +E+ ++ ++ + +E+EEE+++
Sbjct: 179 KFYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 27.3 bits (61), Expect = 9.1
Identities = 10/33 (30%), Positives = 10/33 (30%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
E E E E E EEE KS
Sbjct: 125 SCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSG 157
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 29.9 bits (67), Expect = 1.8
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E EEE EE E+E E E E EE+
Sbjct: 213 EVEASPEEENYEEYEDETELEVEDEEK 239
Score = 29.9 bits (67), Expect = 1.8
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +++ E E EEE EE E+E E E ++EE
Sbjct: 199 EWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDEE 238
Score = 28.3 bits (63), Expect = 6.1
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
D + K+ E + E E E EEE EE ++E
Sbjct: 194 DDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETEL 232
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 30.0 bits (68), Expect = 1.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
R EE++ ++EE +EE+EE + E+ E+
Sbjct: 115 RYDDAYRDLEEDDDDDEESDEEDEESSKSEDDED 148
Score = 29.2 bits (66), Expect = 3.9
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 6/52 (11%)
Query: 18 SSSQCHRVVVDDKRV----KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
S Q V+ DD + + ++ EE+ +++EE +EE+EE +
Sbjct: 94 GSDQV--VIFDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKS 143
Score = 28.4 bits (64), Expect = 5.8
Identities = 7/34 (20%), Positives = 23/34 (67%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
++EE EE+E+ + E++E++++ +++ + +
Sbjct: 129 DDEESDEEDEESSKSEDDEDDDDDDDDDDIATRE 162
Score = 28.4 bits (64), Expect = 6.1
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ + EE++ ++EE +EE+EE + E
Sbjct: 117 DDAYRDLEEDDDDDEESDEEDEESSKSED 145
Score = 28.0 bits (63), Expect = 7.2
Identities = 8/29 (27%), Positives = 21/29 (72%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
E++++ EE ++E+EE + E++E +++
Sbjct: 125 EDDDDDEESDEEDEESSKSEDDEDDDDDD 153
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 30.2 bits (69), Expect = 1.8
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 9 SALGGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
LG V SS V ++ R ++ K + EEE K E E+ E EEE + +
Sbjct: 25 KELGIEVKSHSST---VEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAA 78
>gnl|CDD|237757 PRK14560, PRK14560, putative RNA-binding protein; Provisional.
Length = 160
Score = 29.0 bits (66), Expect = 1.8
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
R + K VK+IK EE +EK + + ++ EE E +++EE Y
Sbjct: 6 RHHLSKKEVKEIK--EELKEKFGVDIDGKDAVEEVETDKKEEIY 47
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase
19 kDa subunit. This family contains several
DNA-directed RNA polymerase 19 kDa polypeptides. The
Poxvirus DNA-directed RNA polymerase (EC: 2.7.7.6)
catalyzes DNA-template-directed extension of the 3'-end
of an RNA strand by one nucleotide at a time.
Length = 167
Score = 29.3 bits (66), Expect = 1.8
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E ++++ EE EEEEE+EE+ E
Sbjct: 8 IDYESDDDDSEEYEEEEEDEEDAESL 33
Score = 28.5 bits (64), Expect = 3.1
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
++++ EE E+EEE+EE+ E E +
Sbjct: 12 SDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 28.5 bits (64), Expect = 3.4
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
E ++ + EE EEEEE+EE+ E E
Sbjct: 11 ESDDDDSEEYEEEEEDEEDAESLESS 36
Score = 27.8 bits (62), Expect = 5.2
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +++ EE +EEEE+EE+ E + +
Sbjct: 11 ESDDDDSEEYEEEEEDEEDAESLESSD 37
Score = 27.8 bits (62), Expect = 5.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
M++ ++ + E +++ EE EEEEE EE+
Sbjct: 1 MEDSDDIIDYESDDDDSEEYEEEEEDEED 29
Score = 27.0 bits (60), Expect = 9.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E +++ +E EEEEE+EE+ + E
Sbjct: 8 IDYESDDDDSEEYEEEEEDEEDAESLE 34
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 29.5 bits (67), Expect = 1.9
Identities = 7/33 (21%), Positives = 19/33 (57%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K + EEE + +E E+ E+ +++ +++
Sbjct: 27 RKQALTEEERQASADESSEDASEDGSDDDSDDD 59
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 30.2 bits (68), Expect = 1.9
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
E++EEKEE+ EE +E+EEE+ E E P CL+
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEHFSILGHPMCLK 89
>gnl|CDD|219311 pfam07149, Pes-10, Pes-10. This family consists of several
Caenorhabditis elegans pes-10 and related proteins.
Members of this family are typically around 400 residues
in length. The function of this family is unknown.
Length = 370
Score = 29.8 bits (67), Expect = 1.9
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEE----EEEEEQEEEFYT 68
+ D+ + K+ ++E EE+EQEEE ++ EE E E +T
Sbjct: 146 GQFEEADELIPKVDQLLKDEVLEEDEQEEEADKLLDNLEEHSETESGIFT 195
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 29.4 bits (66), Expect = 2.0
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
D+ + + E+ +E E+ + EEE E+E+ K P
Sbjct: 39 DELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEP 82
Score = 29.4 bits (66), Expect = 2.0
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELM 77
+ E E+ +E E+ + EEE ++E+ ++ K M
Sbjct: 45 LPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPAQM 85
>gnl|CDD|222491 pfam14006, YqzL, YqzL-like protein. The YqzL-like protein family
includes the B. subtilis YqzL protein, which is
functionally uncharacterized. This family of proteins
is found in bacteria. Proteins in this family are
approximately 50 amino acids in length.
Length = 46
Score = 27.0 bits (60), Expect = 2.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 44 KEEEEQEEEEEEEEEEEEQEEEFYT 68
KE E + ++E EEEEEE EE
Sbjct: 20 KELERETDDEAEEEEEELLEEVDSP 44
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 29.6 bits (67), Expect = 2.1
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 17 ISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
I+ + + R K + +KE+E +EEEE++ E+ EE +E +E
Sbjct: 12 INKEKLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEI 60
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 30.0 bits (68), Expect = 2.1
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 30 KRVKKIK----MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
+VK I + EE E+E E+ EE + E+ + E + +
Sbjct: 820 YKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDIDDEDT 863
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 29.8 bits (68), Expect = 2.1
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 33 KKIKMKEEEEEKEEEEQEEE---EEEEEEEEEQEEEF 66
+ +++++ EE E +E E EE EE++E+ +EE
Sbjct: 528 LERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEE 564
Score = 29.0 bits (66), Expect = 4.0
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 17 ISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE-----EQEEEFY 67
I+S + ++ K ++ + +E EK +EE EE++E+ +EEE E E+E
Sbjct: 522 IASLEELERELEQKA-EEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQ 576
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 28.6 bits (64), Expect = 2.1
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 16/63 (25%)
Query: 20 SQCHRVVVDDKRVKKIKMKEEEEEKEE----------------EEQEEEEEEEEEEEEQE 63
+ RV+ KR + +K ++EEEE + E+ E E+ +E+EE+EQ
Sbjct: 51 PELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQEQI 110
Query: 64 EEF 66
EF
Sbjct: 111 PEF 113
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 28.8 bits (65), Expect = 2.1
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E +KEEE Q+E EE E E E E
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELE 127
Score = 27.6 bits (62), Expect = 5.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KEEE ++E EE E E E E E+++
Sbjct: 106 KEEELQQELEELEARVGELELEIERQKA 133
Score = 26.8 bits (60), Expect = 9.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
K KK + ++E E+ E E E E E ++ +
Sbjct: 102 KEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 29.8 bits (68), Expect = 2.1
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 30 KRVKKI--KMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
K++K+ +K +K +E EE++ EEEE++EQ
Sbjct: 494 KKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLS 530
>gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional.
Length = 199
Score = 29.3 bits (65), Expect = 2.2
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEE-EEEEQEEEFYTKSPKCLEL 76
K+ KK K ++E KEE + E E EEE +EE Q +E P L
Sbjct: 3 KQNKKDWKKFKDEHKEEHKVENEILEEETDEESQHQEPALGHPSYTAL 50
Score = 28.9 bits (64), Expect = 2.6
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
+ K KK K + +EE K E E EEE +EE + ++
Sbjct: 5 NKKDWKKFKDEHKEEHKVENEILEEETDEESQHQE 39
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 29.5 bits (67), Expect = 2.2
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEE 55
+ ++ KK M +EE++ +EE+++ EE
Sbjct: 95 FEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 28.7 bits (65), Expect = 3.5
Identities = 9/29 (31%), Positives = 21/29 (72%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ E+E+K+ +EE++ +EE+++ EE +
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEPY 124
Score = 27.5 bits (62), Expect = 7.6
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 2/30 (6%)
Query: 41 EEEKEEEEQ--EEEEEEEEEEEEQEEEFYT 68
E EKE+++ +EE++ +EE+++ EE Y
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEPYG 125
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 28.4 bits (64), Expect = 2.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 43 EKEEEEQEEEEEEEEEEEEQEEEF 66
++EE++EE EEE + + F
Sbjct: 82 AAAAAKKEEKKEESEEESDDDMGF 105
Score = 28.0 bits (63), Expect = 2.9
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 41 EEEKEEEEQEEEEEEEEE 58
K+EE++EE EEE ++
Sbjct: 84 AAAKKEEKKEESEEESDD 101
Score = 27.6 bits (62), Expect = 4.3
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 39 EEEEEKEEEEQEEEEE 54
++EEK+EE +EE ++
Sbjct: 86 AKKEEKKEESEEESDD 101
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 28.9 bits (65), Expect = 2.2
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
++ + ++E+EE+ + E E+E E E+++ E
Sbjct: 82 EEAEKEKEKEERFMKALAEAEKERAELEKKKAEA 115
Score = 28.5 bits (64), Expect = 3.0
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 30 KRVKKI---KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+ K+ + ++E+ E+E+E+EE + E E+E
Sbjct: 66 KKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKE 104
Score = 27.7 bits (62), Expect = 4.7
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+R K KEE E+++E+E+ + E E+E+ E
Sbjct: 73 RRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAE 107
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 29.1 bits (66), Expect = 2.2
Identities = 19/27 (70%), Positives = 21/27 (77%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
KEEEEE E+EE+ EEE EE EEE EE
Sbjct: 3 KEEEEELEDEEEALEEELEELEEEIEE 29
Score = 28.7 bits (65), Expect = 2.9
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEF 66
EE+E+EEE ++EEE EEE EE EEE
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEI 27
Score = 27.2 bits (61), Expect = 9.9
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
EE+EE+EE E EEE EEE EE +EE
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEE 26
>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional.
Length = 110
Score = 28.3 bits (64), Expect = 2.3
Identities = 10/35 (28%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++ K+ EE +++ +E+Q+ +EE+EE + + E +
Sbjct: 5 EIRRRKL-EELQKQAQEQQQAQEEQEEAQAQAEAQ 38
Score = 27.5 bits (62), Expect = 4.1
Identities = 8/35 (22%), Positives = 26/35 (74%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++I+ ++ EE +++ +++++ +EE+EE + + E
Sbjct: 2 ELEEIRRRKLEELQKQAQEQQQAQEEQEEAQAQAE 36
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 29.6 bits (66), Expect = 2.3
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEE 60
+EE +E +EQ+EEEE EEEEE
Sbjct: 328 DEEMLEETQEQQEEEENEEEEE 349
Score = 29.2 bits (65), Expect = 3.4
Identities = 13/22 (59%), Positives = 18/22 (81%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEE 61
+EE EE ++++EEEE EEEEE
Sbjct: 328 DEEMLEETQEQQEEEENEEEEE 349
Score = 28.8 bits (64), Expect = 3.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 14/47 (29%)
Query: 33 KKIKMKEEEEEKEEEEQE--------------EEEEEEEEEEEQEEE 65
K + + EE+E ++E QE E +E++EEEE +EEE
Sbjct: 302 KDLILGGEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEE 348
Score = 28.8 bits (64), Expect = 4.8
Identities = 14/22 (63%), Positives = 18/22 (81%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQ 62
+EE EE QE++EEEE EEEE+
Sbjct: 328 DEEMLEETQEQQEEEENEEEEE 349
Score = 28.0 bits (62), Expect = 7.0
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 37 MKEEEEEKEEEEQEEEEEE 55
M EE +E++EEE+ EEEEE
Sbjct: 331 MLEETQEQQEEEENEEEEE 349
Score = 28.0 bits (62), Expect = 8.2
Identities = 11/17 (64%), Positives = 15/17 (88%)
Query: 47 EEQEEEEEEEEEEEEQE 63
EE +E++EEEE EEE+E
Sbjct: 333 EETQEQQEEEENEEEEE 349
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 29.3 bits (66), Expect = 2.3
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
+++ K ++ + EEEE+ EEEEE+ +EE++EE +P E
Sbjct: 90 EQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKE 136
Score = 29.3 bits (66), Expect = 2.3
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEE 52
KR + K +++EE+K+EEE+EEE
Sbjct: 25 KRAEWEKHQKKEEQKKEEEEEEE 47
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 29.7 bits (68), Expect = 2.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
D K K + + + KE+EE++EE+EE EEE +
Sbjct: 462 DGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEFK 495
Score = 28.9 bits (66), Expect = 4.4
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 8/40 (20%)
Query: 35 IKMKEEEEEKE--------EEEQEEEEEEEEEEEEQEEEF 66
I EE + K + +E+EEE+EE+EE EEEF
Sbjct: 455 ISYLEEFDGKPFKSVARGDLDLGKEDEEEKEEKEEAEEEF 494
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 29.8 bits (67), Expect = 2.3
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE + + ++ E+E+E E E ++E +
Sbjct: 541 TEERIDLDADDWTEDEDENEMETDEERK 568
Score = 29.1 bits (65), Expect = 3.6
Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
++ EE+ + + ++ E+E+E E + +E K P C
Sbjct: 537 LRNSTEERIDLDADDWTEDEDENEMETDE-ERKKPGCCR 574
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 29.3 bits (66), Expect = 2.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
VD+ + K++EE E+KE E ++ ++E E +E E
Sbjct: 84 VDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERA 122
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 29.8 bits (67), Expect = 2.3
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
D R + EE E E EE+EE+++E++
Sbjct: 573 DPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 28.6 bits (64), Expect = 4.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
D + +E E E EE+EE+++E+++
Sbjct: 573 DPRANNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 28.2 bits (63), Expect = 7.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E E+ E E EE+EE++ E++
Sbjct: 576 ANNNEASEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor
Elf1; Provisional.
Length = 99
Score = 28.1 bits (63), Expect = 2.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEE 56
KI++KE + E+ EEE E E E E
Sbjct: 77 KIEIKERKNEETEEENEIEGESE 99
Score = 27.3 bits (61), Expect = 4.5
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEE 60
K E +E++ EE EEE E E E E
Sbjct: 77 KIEIKERKNEETEEENEIEGESE 99
Score = 26.9 bits (60), Expect = 6.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 43 EKEEEEQEEEEEEEEEEEEQE 63
E +E + EE EEE E E E E
Sbjct: 79 EIKERKNEETEEENEIEGESE 99
Score = 26.6 bits (59), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEE 65
E K E ++ + EE EEE E + E
Sbjct: 74 LEGKIEIKERKNEETEEENEIEGES 98
Score = 26.6 bits (59), Expect = 8.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEE 58
K++ +E + EE E+E E E E E
Sbjct: 77 KIEIKERKNEETEEENEIEGESE 99
Score = 26.2 bits (58), Expect = 9.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
E + E +E++ EE EEE E E E E
Sbjct: 74 LEGKIEIKERKNEETEEENEIEGESE 99
>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd
subfamily; Phd is a cytosolic regulator of G protein
functions. It specifically binds G protein betagamma
(Gbg)-subunits with high affinity, resulting in the
solubilization of Gbg from the plasma membrane. This
impedes the formation of a functional G protein trimer
(G protein alphabetagamma), thereby inhibiting G
protein-mediated signal transduction. Phd also inhibits
the GTPase activity of G protein alpha. Phd can be
phosphorylated by protein kinase A and G
protein-coupled receptor kinase 2, leading to its
inactivation. Phd was originally isolated from the
retina, where it is highly expressed and has been
implicated to play an important role in light
adaptation. It is also found in the pineal gland,
liver, spleen, striated muscle and the brain. The
C-terminal domain of Phd adopts a thioredoxin fold, but
it does not contain a CXXC motif. Phd interacts with G
protein beta mostly through the N-terminal helical
domain.
Length = 175
Score = 28.8 bits (65), Expect = 2.4
Identities = 9/41 (21%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 44 KEEEEQEEEEEEEEEEEEQEEEFYTK-SPKCLELMLQCSPR 83
++ ++ +E E+E+++++E +EEF + + ++ M P
Sbjct: 17 RKFKQLKESEQEDDDDDEDKEEFLQQYREQRMQEMHAKLPF 57
>gnl|CDD|182380 PRK10328, PRK10328, DNA binding protein, nucleoid-associated;
Provisional.
Length = 134
Score = 28.7 bits (64), Expect = 2.4
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELM 77
I + EE EK +E EEEE+++ + E K LELM
Sbjct: 23 IDVLEEMLEKFRVVTKERREEEEQQQRELAERQEKINTWLELM 65
>gnl|CDD|145973 pfam03114, BAR, BAR domain. BAR domains are dimerisation, lipid
binding and curvature sensing modules found in many
different protein families. A BAR domain with an
additional N-terminal amphipathic helix (an N-BAR) can
drive membrane curvature. These N-BAR domains are found
in amphiphysin, endophilin, BRAP and Nadrin. BAR domains
are also frequently found alongside domains that
determine lipid specificity, like pfam00169 and
pfam00787 domains in beta centaurins and sorting nexins
respectively.
Length = 230
Score = 29.2 bits (66), Expect = 2.5
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 24 RVVVDDK--RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE---FYTKSPKCLELML 78
R+ D K R+KK K K+E + EEE ++ +++ EE EE +EE + + L
Sbjct: 144 RLDYDAKRHRLKKAKSKKELSKAEEELRQAQQKFEESNEELKEELPNLLALEVEFVVNCL 203
Query: 79 Q 79
Q
Sbjct: 204 Q 204
>gnl|CDD|220624 pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA-interacting
nuclear protein NIP30. This is a the N-terminal 100
amino acids of a family of proteins conserved from
plants to humans. The full-length protein has
putatively been called NEFA-interacting nuclear protein
NIP30, however no reference could be found to confirm
this.
Length = 99
Score = 28.1 bits (63), Expect = 2.5
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 42 EEKEEEEQEEEEEEEEEEEEQEEEF 66
+E EE + E++ + EE E+ EEF
Sbjct: 74 DEVEESRRAAEKKRKREEAEELEEF 98
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast)
and GNL3L (human) are putative GTPases which are
required for growth and play a role in processing of
nucleolar pre-rRNA. This family contains a potential
nuclear localisation signal.
Length = 80
Score = 27.6 bits (62), Expect = 2.5
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++E EE+K ++E+E+E +E + E+ E
Sbjct: 48 LEEIEEKKRKQEEEKERRKEARKAERAEA 76
Score = 26.8 bits (60), Expect = 5.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEE 59
KK K +EE+E ++E + E E +
Sbjct: 54 KKRKQEEEKERRKEARKAERAEARKRG 80
Score = 26.1 bits (58), Expect = 7.6
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE++ K+EEE+E +E + E + +
Sbjct: 52 EEKKRKQEEEKERRKEARKAERAEARK 78
>gnl|CDD|191365 pfam05756, S-antigen, S-antigen protein. S-antigens are heat
stable proteins that are found in the blood of
individuals infected with malaria.
Length = 94
Score = 28.0 bits (62), Expect = 2.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ K K K ++ +EE E E +EE+ EE EE
Sbjct: 48 NSKNGKGQKYEDLQEEGEGENDDEEDSNSEESNNDEE 84
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 29.2 bits (66), Expect = 2.6
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 17 ISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V D +K + + E EE +EEE E EEE +
Sbjct: 249 FPPEFLKSVEPIDAHLKTVNWLQYFEPPAEEIEEEEPEVLPEEELNTMK 297
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 29.5 bits (67), Expect = 2.6
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
V V + +KI+ + ++ K EEE+EEEEEE E +E F
Sbjct: 509 VAVPEDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKELF 550
>gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar
hook-basal body protein (fliF). Component of the M
(cytoplasmic associated) ring, one of four rings
(L,P,S,M) which make up the flagellar hook-basal body
which is a major portion of the flagellar organelle.
Although the basic structure of the flagella appears to
be similar for all bacteria, additional rings and
structures surrounding the basal body have been observed
for some bacteria (eg Vibrio cholerae and Treponema
pallidum) [Cellular processes, Chemotaxis and motility].
Length = 555
Score = 29.5 bits (66), Expect = 2.7
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEE--------EEQEEEFYTKSPKCLELMLQCSPRAS 85
+ + +EEE K+ +EE+E+E E E E S L M + P
Sbjct: 484 RRREREEELAKQAHLREEQEDEVEGELIKLDDLVGGINEGDEEVSNAELRAMAKEKPEDV 543
Query: 86 ILLI 89
LI
Sbjct: 544 AKLI 547
>gnl|CDD|218366 pfam04990, RNA_pol_Rpb1_7, RNA polymerase Rpb1, domain 7. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 7, represents a mobile module of the RNA
polymerase. Domain 7 forms a substantial interaction
with the lobe domain of Rpb2 (pfam04561).
Length = 135
Score = 28.3 bits (64), Expect = 2.7
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEE 57
+K V +I++K++E EKE+ +E+E++
Sbjct: 91 AEKLVIRIRVKDDEGEKEDSVGDEDEDDVF 120
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like.
Proteins of the Rpd3-like family are class I
Zn-dependent Histone deacetylases that catalyze
hydrolysis of an N(6)-acetyl-lysine residue of a histone
to yield a deacetylated histone (EC 3.5.1.98). RPD3 is
the yeast homolog of class I HDACs. The main function of
RPD3-like group members is regulation of a number of
different processes through protein (mostly different
histones) modification (deacetylation). This group
includes fungal RPD3 and acts via the formation of large
multiprotein complexes. Members of this group are
involved in cell cycle regulation, DNA damage response,
embryonic development and cytokine signaling important
for immune response. Histone deacetylation by yeast RPD3
represses genes regulated by the Ash1 and Ume6
DNA-binding proteins. In mammals, they are known to be
involved in progression of various tumors. Specific
inhibitors of mammalian histone deacetylases could be a
therapeutic drug option.
Length = 375
Score = 29.4 bits (66), Expect = 2.7
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 95 LFCFRLTLT--ATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSET 142
L CF L++ A C F++ F L++G GYT +V W ET
Sbjct: 264 LGCFNLSMKGHANCVNFVKSFNLPM----LVLGGGGYTMRNVARTWAFET 309
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 29.1 bits (66), Expect = 2.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
K K E ++ EEE+E E E EE E
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPE 293
>gnl|CDD|152571 pfam12136, RNA_pol_Rpo13, RNA polymerase Rpo13 subunit HTH
domain. This domain is found in archaea, and is about
40 amino acids in length. It has a single completely
conserved residue E that may be functionally important.
It is found in the archaeal DNA dependent RNA
polymerase. The domain is a 'helix-turn-helix' (HTH)
domain in the Rpo13 subunit of the RNA polymerase. This
domain is involved in downstream DNA binding, and the
entire subunit has also been implicated in contacting
transcription factor II B.
Length = 40
Score = 26.3 bits (58), Expect = 2.8
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 53 EEEEEEEEEQEEEFYTKSPKCLELMLQ 79
EEE+ EEE+E E T S +EL+++
Sbjct: 1 EEEKTVEEEEETEVPTVSIADIELLVK 27
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 29.3 bits (65), Expect = 2.8
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
EE +EE+ E + E EEE++EEE P+
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 28.1 bits (62), Expect = 7.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+E EEE + E + E EEE+EEE+ E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIE 110
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic
region found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 27.8 bits (62), Expect = 2.9
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKC 73
RV ++ +EEE+ EE EE++EE + E++ + +SP+
Sbjct: 1 PRVSALEEDLDEEEESEE--EEDDEEIRRKAERDVDRGRRSPRR 42
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 29.7 bits (66), Expect = 2.9
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
++IK +EE+E E ++ +EEE ++E+E+E+
Sbjct: 1023 KERIKDQEEKERMESLQRAKEEEIGKKEKEREQ 1055
Score = 28.9 bits (64), Expect = 4.9
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
R+ K ++K++EE++ E + +EEE ++E+E E
Sbjct: 1019 DRIVKERIKDQEEKERMESLQRAKEEEIGKKEKERE 1054
Score = 28.2 bits (62), Expect = 7.6
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+K +M+ + KEEE ++E+E E+ + + Y + K
Sbjct: 1031 EKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAK 1070
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 28.3 bits (63), Expect = 3.0
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
E+E E E EE EE+ E +E +
Sbjct: 8 GYEDEPSEPEIEEGAEEDSESNNNDEVKGSI 38
Score = 27.1 bits (60), Expect = 7.8
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+ M E+E E E +E EE+ E E
Sbjct: 5 MDMGYEDEPSEPEIEEGAEEDSESNNNDE 33
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 28.0 bits (63), Expect = 3.0
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K + + E E EEE EEE+E E
Sbjct: 10 KLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAE 45
Score = 27.7 bits (62), Expect = 4.3
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ EEE EEEEE E ++EE
Sbjct: 23 ETAEEEAAAAAPAPAPEEEEEAELEDEE 50
Score = 27.3 bits (61), Expect = 6.1
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K+ ++ EE + E EEE EEE
Sbjct: 9 RKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEE 41
Score = 26.9 bits (60), Expect = 7.5
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E +EE EEEEE E E
Sbjct: 21 PAETAEEEAAAAAPAPAPEEEEEAELE 47
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns
from pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and
Prp22. ATP hydrolysis by the DEAH-box enzyme Prp16
promotes a conformational change in the spliceosome
that leads to protection of the 3'ss from targeted
RNase H cleavage. This change, which probably reflects
binding of the 3'ss PyAG in the catalytic centre of the
spliceosome, requires the ordered recruitment of Slu7,
Prp18, and Prp22 to the spliceosome. There is a close
functional relationship between Prp8, Prp18, and Slu7,
and Prp18 interacts with Slu7, so that together they
recruit Prp22 to the spliceosome. Most members of the
family carry a zinc-finger of the CCHC-type upstream of
this domain.
Length = 236
Score = 28.9 bits (65), Expect = 3.0
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ V++ + EE +K + ++E++ ++ + E+E EE
Sbjct: 20 KEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEE 55
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 29.2 bits (65), Expect = 3.1
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 28 DDKRVKKIKMKEEEEEKE--------EEEQEEEEEEEEEEEEQEEEFYTKSPK 72
++K+ K +++K+ E +E E ++ ++ +E EE E+ +E YT S
Sbjct: 142 EEKKKKLLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYA 194
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex
together with SecB and SecD on the surface of
Salmonella. All these proteins are secreted by the type
III secretion system. Many mucosal pathogens use type
III secretion systems for the injection of effector
proteins into target cells. SecB, SseC and SecD are
inserted into the target cell membrane. where they form
a small pore or translocon. In addition to SseC, this
family includes the bacterial secreted proteins PopB,
PepB, YopB and EspD which are thought to be directly
involved in pore formation, and type III secretion
system translocon.
Length = 303
Score = 29.0 bits (65), Expect = 3.1
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEE 61
+ ++++E+K EE QE+ ++ E+ EE
Sbjct: 26 RARDKQEKKAEEYQEQIKKAIEKAEE 51
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 28.7 bits (65), Expect = 3.1
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
D++ + ++ KEE E++E+E +++ EE+EE+ EE + + LE
Sbjct: 95 DRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELE 141
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family
consists of several ATP synthase E chain sequences
which are components of the CF(0) subunit.
Length = 83
Score = 27.4 bits (61), Expect = 3.1
Identities = 8/37 (21%), Positives = 21/37 (56%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +KK + K E E +E+ E+ + ++++ ++E
Sbjct: 29 QRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQE 65
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 29.6 bits (67), Expect = 3.2
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQE 63
EE + +EQ + E + E +Q+
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQD 605
Score = 28.9 bits (65), Expect = 5.3
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
D+KR + ++E K +E+ +E E+EE ++
Sbjct: 685 DEKR------QAQQEAKALNVEEQSVQETEQEERVQQ 715
>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator. This entry
represents the conserved N-terminal region of SWAP
(suppressor-of-white-apricot protein) proteins. This
region contains two highly conserved motifs, viz: DRY
and EERY, which appear to be the sites for alternative
splicing of exons 2 and 3 of the SWAP mRNA. These
proteins are thus thought to be involved in
auto-regulation of pre-mRNA splicing. Most family
members are associated with two Surp domains pfam01805
and an Arginine- serine-rich binding region towards the
C-terminus.
Length = 121
Score = 28.2 bits (63), Expect = 3.2
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEE-----EEEEEEEEQEEEFYTKSPKCLE 75
+ R ++ +EE+E EE EE + + EE E+EEE + + +
Sbjct: 51 IPRGSRNRRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQKKK 105
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 29.1 bits (65), Expect = 3.2
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
K K++E ++EKEE +E EE E E EE QE
Sbjct: 141 KEKLEELQKEKEELLKELEELEAEYEEVQER 171
Score = 28.0 bits (62), Expect = 7.3
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
EE +EK EE Q+E+EE +E EE E E+
Sbjct: 138 EELKEKLEELQKEKEELLKELEELEAEY 165
>gnl|CDD|152814 pfam12379, DUF3655, Protein of unknown function (DUF3655). This
domain family is found in viruses, and is approximately
70 amino acids in length. The family is found in
association with pfam08716, pfam01661, pfam05409,
pfam06471, pfam08717, pfam06478, pfam09401, pfam06460,
pfam08715, pfam08710.
Length = 70
Score = 26.9 bits (59), Expect = 3.3
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
EEE+ +E E +EEE EE E E E+ Y P
Sbjct: 10 EEEDCEEYECEEEEIEETCEHEYGTEDDYKGLP 42
Score = 26.5 bits (58), Expect = 5.5
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 43 EKEEEEQEEEEEEEEEEEEQEEEFYTK 69
++EE+ +E E EEEE EE E E+ T+
Sbjct: 9 DEEEDCEEYECEEEEIEETCEHEYGTE 35
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 28.5 bits (64), Expect = 3.4
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
Query: 29 DKRVKKIKMKEEEEEKE------EEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
+K +KKI + EEE +E EE ++ +EE + E EE EE K+ K E Q
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQ 61
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 29.3 bits (66), Expect = 3.4
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEE 59
+K +KK++ K E++E E EE E+ EE ++
Sbjct: 292 EKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 28.5 bits (64), Expect = 6.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 33 KKIKMKEEEEEKEE---EEQEEEEEEEEEEEEQEEE 65
+ K E+E +K E E+QE+E EE E+ E+ +
Sbjct: 286 ELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQ 321
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 28.7 bits (65), Expect = 3.4
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEE--EEEEEEEEQEEEFYTKSPKCLELMLQC 80
+ + K+K+E EE ++ E + E+ ++ E+ EE + +L +
Sbjct: 67 LKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKEL 119
Score = 28.4 bits (64), Expect = 4.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+++K+K EE E+ E EE ++ E+E ++ + E
Sbjct: 89 QAQIEKLKKGREETEERTELLEELKQLEKELKKLKAEL 126
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 29.3 bits (66), Expect = 3.5
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++I+ + EE EKE EE E E EE EEE ++ EE
Sbjct: 402 SAALEEIQEELEELEKELEELERELEELEEEIKKLEE 438
Score = 28.2 bits (63), Expect = 8.4
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ +KI+ EE E + EE +EE E EE EE
Sbjct: 284 EELEEKIERLEELEREIEELEEELEGLRALLEELEEL 320
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3). HDAC3 is a
Zn-dependent class I histone deacetylase that catalyzes
hydrolysis of N(6)-acetyl-lysine residue of a histone to
yield a deacetylated histone (EC 3.5.1.98). Histone
acetylation/deacetylation process is important for
mediation of transcriptional regulation of many genes.
In order to target specific chromatin regions, HDAC3 can
interact with DNA-binding proteins (transcriptional
factors) either directly or after forming complexes with
a number of other proteins, as observed for the
SMPT/N-CoR complex which recruits human HDAC3 to
specific chromatin loci and activates deacetylation.
Human HDAC3 is also involved in deacetylation of
non-histone substrates such as RelA, SPY and p53
factors. This protein can also down-regulate p53
function and subsequently modulate cell growth and
apoptosis. This gene is therefore regarded as a
potential tumor suppressor gene. HDAC3 plays a role in
various physiological processes, including subcellular
protein localization, cell cycle progression, cell
differentiation, apoptosis and survival. HDAC3 has been
found to be overexpressed in some tumors including
leukemia, lung carcinoma, colon cancer and maxillary
carcinoma. Thus, inhibitors precisely targeting HDAC3
(in some cases together with retinoic acid or
hyperthermia) could be a therapeutic drug option.
Length = 381
Score = 28.9 bits (65), Expect = 3.5
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 95 LFCFRLTLT--ATCKMFLRKFPFDTQTCPLLV-GSFGYTSNDVKYKWQSET 142
L CF L++ C F++ F PLLV G GYT +V W ET
Sbjct: 264 LGCFNLSIKGHGECVEFVKSF-----NIPLLVLGGGGYTVRNVARCWTYET 309
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 27.8 bits (62), Expect = 3.6
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 34 KIKMKEEEEEKEEEEQE-----EEEEEEEEEEEQEEEFYTK 69
K + KE ++EKE E Q +E +EE+E+ E+ K
Sbjct: 44 KAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEKMAAK 84
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 28.4 bits (64), Expect = 3.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+EEEE+++EEE+E + EQ
Sbjct: 124 REEEEKRDEEERERLLRAAKSRSEQSR 150
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 29.2 bits (65), Expect = 3.7
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
DD + + K ++E+E++EE + ++E + + QE
Sbjct: 3940 DDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQEN 3976
>gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter. This domain is related
to pfam00005.
Length = 85
Score = 27.2 bits (61), Expect = 3.7
Identities = 10/28 (35%), Positives = 21/28 (75%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
E++E+ E+QE+ E++++E ++ EEF
Sbjct: 19 LEQKEERLEQQEKAYEKQQKEIKKLEEF 46
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 27.8 bits (62), Expect = 3.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEE--EEQEEE 65
++ + IK EE + EE EEE E+ +E EE EE
Sbjct: 28 EEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREE 66
Score = 27.0 bits (60), Expect = 6.3
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
Query: 29 DKRVKKIKMK-EEEEEKEEEEQEEEEEE--EEEEEEQEEE 65
++ +K+ + + E E+ EEE E+ +E EE EE EEE
Sbjct: 31 EQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEE 70
Score = 26.6 bits (59), Expect = 9.1
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 25 VVVDDKRV-KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++DD V ++IK E ++E EE +EE E+ +E +E
Sbjct: 1 MMMDDSEVLREIKKAEISADEEIEEAKEEAEQIIKEAREEAR 42
>gnl|CDD|100084 cd06163, S2P-M50_PDZ_RseP-like, RseP-like Site-2 proteases (S2P),
zinc metalloproteases (MEROPS family M50A), cleave
transmembrane domains of substrate proteins, regulating
intramembrane proteolysis (RIP) of diverse signal
transduction mechanisms. In Escherichia coli, the S2P
homolog RseP is involved in the sigmaE pathway of
extracytoplasmic stress responses. Also included in this
group are such homologs as Bacillus subtilis YluC,
Mycobacterium tuberculosis Rv2869c S2P, and Bordetella
bronchiseptica HurP. Rv2869c S2P appears to have a role
in the regulation of prokaryotic lipid biosynthesis and
membrane composition and YluC of Bacillus has a role in
transducing membrane stress. This group includes
bacterial and eukaryotic S2P/M50s homologs with either
one or two PDZ domains present. PDZ domains are believed
to have a regulatory role. The RseP PDZ domain is
required for the inhibitory reaction that prevents
cleavage of its substrate, RseA.
Length = 182
Score = 28.5 bits (65), Expect = 3.8
Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 15/60 (25%)
Query: 51 EEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRASIL----LIN--MALTLFCFRLTLTA 104
E+ EEE + E+ F +K Q R I+ L N +A+ LF L+ A
Sbjct: 67 EDPEEEADPEDDPRSFNSKPV------WQ---RILIVFAGPLANFLLAIVLFAVLLSFLA 117
>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase. Aspartate kinase
catalyzes a first step in the biosynthesis from Asp of
Lys (and its precursor diaminopimelate), Met, and Thr.
In E. coli, a distinct isozyme is inhibited by each of
the three amino acid products. The Met-sensitive (I) and
Thr-sensitive (II) forms are bifunctional enzymes fused
to homoserine dehydrogenases and form homotetramers,
while the Lys-sensitive form (III) is a monofunctional
homodimer.The Lys-sensitive enzyme of Bacillus subtilis
resembles the E. coli form but is an alpha 2/beta 2
heterotetramer, where the beta subunit is translated
from an in-phase alternative initiator at Met-246. This
may be a feature of a number of closely related forms,
including a paralog from B. subtilis [Amino acid
biosynthesis, Aspartate family].
Length = 441
Score = 28.9 bits (65), Expect = 3.9
Identities = 18/85 (21%), Positives = 33/85 (38%)
Query: 9 SALGGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYT 68
SA+ GV + + K++E+ E E + EE + E
Sbjct: 40 SAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIPQAIAEELKRLLDAELVLE 99
Query: 69 KSPKCLELMLQCSPRASILLINMAL 93
+ P+ ++ +L R S L++ AL
Sbjct: 100 EKPREMDRILSFGERLSAALLSAAL 124
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 28.8 bits (64), Expect = 3.9
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 28 DDKRVKKIK-MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELM--LQCS-PR 83
++K+ KK++ ++E E E+ E + EE E +E + +S K + LQ S +
Sbjct: 416 EEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSKLASWVTFLQVSYRK 475
Query: 84 ASILLINMALTLFCF 98
A+ L MA +
Sbjct: 476 ANQALWLMAAAILLL 490
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 28.8 bits (65), Expect = 3.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEE 61
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 27.7 bits (62), Expect = 9.8
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 45 EEEEQEEEEEEEEEEEEQEEE 65
E +E E EE E EE +E+ E
Sbjct: 241 EADEAEPEEAETEEAQEEAAE 261
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 28.8 bits (64), Expect = 3.9
Identities = 9/38 (23%), Positives = 29/38 (76%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +R+K+++ + + ++++++ EE E++ + E++Q+EE
Sbjct: 99 EQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEE 136
Score = 28.8 bits (64), Expect = 4.1
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K K ++ EE + ++ E+E ++ E+E+ +
Sbjct: 81 RKKKEEQVAEELKPKQAAEQERLKQLEKERLKA 113
Score = 28.8 bits (64), Expect = 4.8
Identities = 12/35 (34%), Positives = 28/35 (80%), Gaps = 1/35 (2%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEE-EEEEEEEEEQE 63
K+++K ++K +E++K+ EE E++ + E++++EEQ
Sbjct: 104 KQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQA 138
Score = 28.0 bits (62), Expect = 6.9
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQE 63
K E++ K++EEQ EE + ++ EQE
Sbjct: 76 KGEQQRKKKEEQVAEELKPKQAAEQE 101
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 28.1 bits (63), Expect = 4.0
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYT 68
+ +EE+ EE+ ++E + E EE Y
Sbjct: 16 LDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYN 47
>gnl|CDD|220821 pfam10602, RPN7, 26S proteasome subunit RPN7. RPN7 (known as the
non ATPase regulatory subunit 6 in higher eukaryotes)
is one of the lid subunits of the 26S proteasome and
has been shown in Saccharomyces cerevisiae to be
required for structural integrity. The 26S proteasome
is is involved in the ATP-dependent degradation of
ubiquitinated proteins.
Length = 174
Score = 28.3 bits (64), Expect = 4.0
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE----QEE--EFYTKS---PKCLELML 78
D+ V++++ K EEE +E + + ++ +E +EE + E Y K L+
Sbjct: 1 DEAWVEELRKKNEEELEELDAELKDAKENLGKEEIRRALLDLAEHYAKIGDLENALKAYS 60
Query: 79 QCSPRASIL--LINMALTL 95
+ + L I+M L L
Sbjct: 61 RAREYCTSLGHKIDMCLNL 79
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 29.0 bits (65), Expect = 4.0
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEE---EEEQEE 64
+K V+ + ++ + ++ E EE + EEQEE
Sbjct: 777 EKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEE 815
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 28.0 bits (63), Expect = 4.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+EE E +EE ++ EEE E++EEE +E
Sbjct: 19 KREEFERREELLKQREEELEKKEEELQESL 48
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 29.1 bits (65), Expect = 4.2
Identities = 10/30 (33%), Positives = 21/30 (70%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+M ++ E ++EE+ ++++ E E+EEQ E
Sbjct: 202 EMGDDTESEDEEDGDDDQPTENEQEEQGEG 231
Score = 28.8 bits (64), Expect = 4.9
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEE-EEEEQEEE 65
RVV + ++ +++ EE + E E EE+ ++++ E EQEE+
Sbjct: 188 RVVRE--MLRSMELAEEMGDDTESEDEEDGDDDQPTENEQEEQ 228
Score = 28.4 bits (63), Expect = 5.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQE 63
+E+ ++ + E E+EE+ E E E QE
Sbjct: 212 EEDGDDDQPTENEQEEQGEGEGEGQE 237
Score = 28.0 bits (62), Expect = 8.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E E EE+ +++ E E+EE+ E E
Sbjct: 206 DTESEDEEDGDDDQPTENEQEEQGEGE 232
Score = 28.0 bits (62), Expect = 9.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E +E +E E + E E EEE
Sbjct: 231 GEGEGQEGSAPQESEATDRESESGEEE 257
Score = 28.0 bits (62), Expect = 9.2
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E+EE+ ++++ E E+EE+ E E E +
Sbjct: 210 EDEEDGDDDQPTENEQEEQGEGEGEGQ 236
Score = 28.0 bits (62), Expect = 9.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+EE+ +++ E E+EE+ E E + +E
Sbjct: 211 DEEDGDDDQPTENEQEEQGEGEGEGQE 237
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 28.8 bits (65), Expect = 4.2
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+R + +++E++++ E+E+ + E E EE Q E
Sbjct: 191 RRKRSKELREDDDDDEDEDDDGEGGGEGGEERQRE 225
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER
protein which has been implicated in protein
trafficking.
Length = 139
Score = 27.9 bits (62), Expect = 4.3
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 18/55 (32%)
Query: 34 KIKMKEEEEEKEEEEQ------------------EEEEEEEEEEEEQEEEFYTKS 70
K + KE E+E+ E E+ EE+ ++EE EE+F T S
Sbjct: 40 KAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFATPS 94
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 28.9 bits (65), Expect = 4.3
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
KI EE+ K+++++E+++EEE + EE+
Sbjct: 735 FKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional.
Length = 436
Score = 28.6 bits (64), Expect = 4.6
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%)
Query: 98 FRLTLT--ATCKMFLRKFPFDTQTCPLLV-GSFGYTSNDVKYKWQSETPV 144
F LT+ A C F+R PLLV G GYT +V W ET V
Sbjct: 271 FNLTIKGHAACVEFVRSL-----NIPLLVLGGGGYTIRNVARCWAYETGV 315
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional.
Length = 857
Score = 29.0 bits (65), Expect = 4.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 28 DDKRVKKIKMKEEE-EEKEEEEQEEEEEEEEEEEE 61
D+ K++ M EE +KE + E EEE + E+
Sbjct: 434 DEASKKRLDMLNEELSDKERQYSELEEEWKAEKAS 468
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 28.1 bits (63), Expect = 4.6
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEE----QEEEFY 67
EEEEE+ ++ EE+EEE QE Y
Sbjct: 153 EEEEEEGSGSGDDGEEDEEEGIVYFVLQESTGY 185
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 29.0 bits (65), Expect = 4.7
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
V + + ++ E KEEE EE + +EE EE
Sbjct: 755 VAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEE 792
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 28.1 bits (63), Expect = 4.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQE----EEFYTKSPKC 73
+ E EEE+EE EEEEE +E E E + P C
Sbjct: 158 DLEPPEEEEEEIAEEEEEVKEPEDCFPEGCVRRFPCC 194
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 27.7 bits (62), Expect = 5.0
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 50 EEEEEEEEEEEEQEEEF 66
EEEEEE +EE+EEEF
Sbjct: 74 EEEEEENGNDEEEEEEF 90
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.9 bits (65), Expect = 5.1
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLEL 76
+R+K+++ KEE E+ +++ +E E+ EE EE+ E + K EL
Sbjct: 328 ERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEEL 374
>gnl|CDD|236152 PRK08115, PRK08115, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 858
Score = 28.7 bits (64), Expect = 5.1
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 6 FKNSALGGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
++ A GG V + S+ D +V + +K EE + +E+ EE EEEE ++
Sbjct: 757 YRGGAKGGTVYVDGSR-------DAQV--LTLKAEENDLDEQLLLLPEELEEEETKKP 805
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein
7 homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 27.6 bits (62), Expect = 5.2
Identities = 11/24 (45%), Positives = 21/24 (87%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEE 60
M+E ++E+EEE++E+E+E E +E+
Sbjct: 27 MEEYDKEEEEEKEEKEKEAEPDED 50
>gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease.
Endonuclease that cleaves the 5'-overhanging flap
structure that is generated by displacement synthesis
when DNA polymerase encounters the 5'-end of a
downstream Okazaki fragment. Has 5'-endo-/exonuclease
and 5'-pseudo-Y-endonuclease activities. Cleaves the
junction between single and double-stranded regions of
flap DNA.
Length = 338
Score = 28.4 bits (64), Expect = 5.2
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
V V D + ++K + EE +E E+ EE+ EE E+ EE
Sbjct: 76 VYVFDGKPPELKAETLEERREIREEAEEKWEEALEKGDLEE 116
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 26.9 bits (60), Expect = 5.3
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 38 KEEEEEKEE-EEQEEEEEEEEEEEEQEEE 65
K+EEE KE+ EE E+ EE E E ++ EE
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREE 68
>gnl|CDD|232981 TIGR00456, argS, arginyl-tRNA synthetase. This model recognizes
arginyl-tRNA synthetase in every completed genome to
date. An interesting feature of the alignment of all
arginyl-tRNA synthetases is a fairly deep split between
two families. One family includes archaeal, eukaryotic
and organellar, spirochete, E. coli, and Synechocystis
sp. The second, sharing a deletion of about 25 residues
in the central region relative to the first, includes
Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and
Mycobacteria, and the Gram-negative bacterium
Helicobacter pylori [Protein synthesis, tRNA
aminoacylation].
Length = 566
Score = 28.5 bits (64), Expect = 5.4
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
+I + EE E+ EEE E + E +E+ + + + +E L+
Sbjct: 195 YVEINKRLEENEELEEEARELFVKLESGDEEAIKLWK---RLVEYSLE 239
>gnl|CDD|221198 pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term.
The broad host-range plasmid RK2 is able to replicate in
and be inherited in a stable manner in diverse
Gram-negative bacterial species. It encodes a number of
co-ordinately regulated operons including a central
control korF1 operon that represses the kfrA operon. The
KfrA polypeptide is a site-specific DNA-binding protein
whose operator overlaps the kfrA promoter. The
N-terminus, containing an helix-turn-helix motif, is
essential for function. Downstream from this family is
an extended coiled-coil domain containing a heptad
repeat segment which is probably responsible for
formation of multimers, and may provide an example of a
bridge to host structures required for plasmid
partitioning.
Length = 120
Score = 27.3 bits (61), Expect = 5.5
Identities = 11/26 (42%), Positives = 11/26 (42%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEE 64
E E E E E E E EEE E
Sbjct: 95 AERAELEAELAEAAAEAEALEEELEA 120
>gnl|CDD|225294 COG2450, COG2450, Uncharacterized conserved protein [Function
unknown].
Length = 124
Score = 27.3 bits (61), Expect = 5.5
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 33 KKIKMKEEEEEKEEEEQEEEE-EEEEEEEEQEEEFYT 68
K+ K+ +++ +E +E + EE EEE EE
Sbjct: 6 DKLLKKKGDQKSSDEPVKEIDLEEYEEEISPEEAKVY 42
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 28.1 bits (63), Expect = 5.6
Identities = 12/69 (17%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 11 LGGVVSISSSQCHRVVVDDKRVKKIK--MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYT 68
+ + + ++++D +++K+++ MKE ++E E ++ + ++ ++ +E++ E
Sbjct: 53 AAVITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMD 112
Query: 69 KSPKCLELM 77
ELM
Sbjct: 113 DQ---RELM 118
>gnl|CDD|218358 pfam04979, IPP-2, Protein phosphatase inhibitor 2 (IPP-2).
Protein phosphotase inhibitor 2 (IPP-2) is a
phosphoprotein conserved among all eukaryotes, and it
appears in both the nucleus and cytoplasm of tissue
culture cells.
Length = 123
Score = 27.4 bits (61), Expect = 5.6
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 16 SISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
S S S+ + + + +K+ E + E+ E E+EE EE
Sbjct: 42 SDSESEGNESLTPESLAEKLAAAESSDPSFSIEESESSSSEDEEFSPEE 90
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 28.6 bits (64), Expect = 5.6
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ K+++ E EK+ E + EE + E E++ EE
Sbjct: 127 SKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEE 164
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 28.3 bits (63), Expect = 5.7
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K E E E++ E+E EEE EEQE E
Sbjct: 254 KANTNETEIEDESEDEYEEEAGEEQENE 281
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 28.2 bits (63), Expect = 5.8
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 18 SSSQCHRVVVDD-KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE--EFY 67
S SQ RV ++ + ++K + + + +E +E E+++EE E+ Q+E +FY
Sbjct: 99 SISQADRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFY 151
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved
in conjugation with cellular fusion (mating) and
invasive growth. A high throughput localisation study
has localised RXT2 to the nucleus.
Length = 141
Score = 27.4 bits (61), Expect = 5.9
Identities = 12/47 (25%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 24 RVVVDDKRVKKI---KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
R V+ KR+K ++ E+ + +++++++E++EE + E+ +E Y
Sbjct: 31 RDVLSRKRIKFNNPPRIDEDGGDIDDDDEDDEDDEEADAEDDDENPY 77
Score = 27.0 bits (60), Expect = 9.0
Identities = 6/44 (13%), Positives = 24/44 (54%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
V+ + + +E+ + ++ +E++E++EE + ++++
Sbjct: 31 RDVLSRKRIKFNNPPRIDEDGGDIDDDDEDDEDDEEADAEDDDE 74
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 28.5 bits (64), Expect = 5.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
++V + +++E +EE +E E+E EE E +E +E+
Sbjct: 227 LALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEK 268
Score = 28.1 bits (63), Expect = 7.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ + ++++E EE EE ++E +E EEE EE E
Sbjct: 226 ELALLVLRLEELREELEELQEELKEAEEELEELTAE 261
Score = 28.1 bits (63), Expect = 8.2
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
D+ + +++E+ EE +EE + E E EE E E EE
Sbjct: 333 DELAEELAELEEKLEELKEELESLEAELEELEAELEE 369
Score = 28.1 bits (63), Expect = 9.4
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
E E + EE +E EE EEE E E E
Sbjct: 757 TELEAEIEELEERLEEAEEELAEAEAE 783
Score = 27.7 bits (62), Expect = 9.6
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEE--EEEEEEEQEE 64
++ +K+++ + EE E+E EE +EE E EE EE +EE
Sbjct: 431 EEAELKELQAELEELEEELEELQEELERLEEALEELREE 469
>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor.
Length = 200
Score = 27.7 bits (62), Expect = 6.3
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQ 62
M E+E E+ E+ E+EE+E+
Sbjct: 1 MAEQEPTAEQAEEIAAEDEEDEDSVN 26
>gnl|CDD|219727 pfam08145, BOP1NT, BOP1NT (NUC169) domain. This N terminal domain
is found in BOP1-like WD40 proteins.
Length = 259
Score = 28.0 bits (63), Expect = 6.4
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEE 53
K V+ I+ + EK +EE EE +
Sbjct: 114 KLVRAIREGWIKPEKPKEEDEEPK 137
>gnl|CDD|189023 cd09853, PIN_StructSpec-5'-nucleases, PIN domains of
structure-specific 5' nucleases (or flap
endonuclease-1-like) involved in DNA replication,
repair, and recombination. Structure-specific 5'
nucleases are capable of both 5'-3' exonucleolytic
activity and cleaving bifurcated or branched DNA, in an
endonucleolytic, structure-specific manner. The family
includes the PIN (PilT N terminus) domains of Flap
Endonuclease-1 (FEN1), Exonuclease-1 (EXO1), Mkt1, Gap
Endonuclease 1 (GEN1), and Xeroderma pigmentosum
complementation group G (XPG) nuclease. Also included
are the PIN domains of the 5'-3' exonucleases of DNA
polymerase I and single domain protein homologs, as well
as, the bacteriophage T4- and T5-5' nucleases, and other
homologs. These nucleases contain a PIN domain with a
helical arch/clamp region (I domain) of variable length
(approximately 16 to 800 residues) and a H3TH
(helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. With the exception of Mkt1,
the nucleases within this family have a carboxylate rich
active site that is involved in binding essential
divalent metal ion cofactors (Mg2+, Mn2+, Zn2+, or
Co2+).
Length = 163
Score = 27.6 bits (61), Expect = 6.4
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK-SPKCLELM 77
+VV D K ++ E + +E ++E E E EEE++ +E + C EL+
Sbjct: 50 IVVFDG--GKPVLRLEHLPEYKENRDEAEAEATEEEKRLDEQTFEYLKDCKELL 101
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 27.8 bits (62), Expect = 6.4
Identities = 14/37 (37%), Positives = 25/37 (67%), Gaps = 5/37 (13%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEE-----EEEEQEEE 65
K ++ E+EE E+ +EE+E +EE ++EEQE++
Sbjct: 85 KRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQK 121
Score = 27.8 bits (62), Expect = 7.3
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
KE +EEK Q+EE+E++ +E+ ++E
Sbjct: 103 KEMKEEKRLHLQKEEQEQKMAKEKDKQEI 131
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 28.5 bits (63), Expect = 6.5
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 20 SQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEE-------EEEEEEEEEEQEEEFYTKSP 71
+ +R + DKR+KK +EE ++ E+ + +E E E +E+ SP
Sbjct: 649 KKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGGVPDILLKEIEVEDDEKTPILSP 707
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded
proton translocating A0 complex. It is unclear
precisely where AhaH fits into these complexes.
Length = 85
Score = 26.3 bits (58), Expect = 6.6
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + R + ++ EE EE+ + EE +E EEE E+E E
Sbjct: 26 IAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAE 64
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific
phytosulfokine precursor proteins. Phytosulfokines, are
active as either a pentapeptide or a C-terminally
truncated tetrapeptide. These compounds were first
isolated because of their ability to stimulate cell
division in somatic embryo cultures of Asparagus
officinalis.
Length = 74
Score = 26.2 bits (58), Expect = 6.7
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ E E + +E+E E E E EEE
Sbjct: 28 KIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 26.2 bits (58), Expect = 7.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEE 61
K++ E K +E++ E E E EEE
Sbjct: 28 KIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 27.5 bits (61), Expect = 6.7
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 37 MKEEEEEKEEE----EQEEEEEEEEEEEEQEEE 65
MK+E ++ + E E EE+ +E+Q EE
Sbjct: 1 MKDEHNQEHDHLSQKEPESEEKACACKEQQGEE 33
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 28.5 bits (63), Expect = 6.8
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLE 75
D K ++ +EE ++ + EE EEEE Q EF + E
Sbjct: 417 DPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDRE 464
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 28.0 bits (62), Expect = 6.8
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K +IK +EE K ++ + + ++E + E+E E
Sbjct: 284 EKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAE 320
Score = 28.0 bits (62), Expect = 9.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
D+ K K + + K+E + E+E E++E E Q++
Sbjct: 294 DEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKK 329
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 27.2 bits (61), Expect = 7.0
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+++IK EEE + E E+EE +E+E+ ++ E
Sbjct: 91 LRRIKELEEELREVEAEREEAVKEKEKLLKKVEA 124
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 28.1 bits (63), Expect = 7.1
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRASILLINMALTLF 96
KE EE +E+ E+ E+ E +EE + PK ++ + + + + + +
Sbjct: 461 KEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINEETY 519
Score = 28.1 bits (63), Expect = 7.3
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 29 DKRVKKIKMKEEEEEKEE-EEQEEEEEEEEEEEEQE 63
VK+ + EE +E+ EQ E+ E +EE ++E
Sbjct: 457 QSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKE 492
Score = 28.1 bits (63), Expect = 8.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
+ + EE EK E+ E+ E +EE +++ + K P
Sbjct: 463 AALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIP 501
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly
related to archaeal Holliday junction resolvase
[Nucleotide transport and metabolism].
Length = 175
Score = 27.4 bits (61), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
E + ++EEE + +E E++ EE E+ KS
Sbjct: 53 EAQARKEEEWKLKEWIEKKIEEAREDAVRKS 83
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 27.9 bits (62), Expect = 7.5
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++R + ++ ++E EE E + ++E+E E+ E+ E +
Sbjct: 236 EERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETK 272
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 28.3 bits (63), Expect = 7.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
K K EE KE E E E +E+ +EEQ
Sbjct: 2571 KAKIEESRKERERIESETQEDNTDEEQINRQ 2601
Score = 28.3 bits (63), Expect = 7.9
Identities = 8/46 (17%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEE----EEEEQEEE 65
+ +++ R ++ +++ E +E +E++ +++E EEE++
Sbjct: 2571 KAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYS 2616
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 28.2 bits (63), Expect = 7.6
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+K +K+ + ++E E+E EE +E E ++ E E+E + K+ K
Sbjct: 535 EKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALK 578
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 28.4 bits (64), Expect = 7.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EE+ E EE E++EE E E EEE
Sbjct: 365 EEQNEVVEEADEQQEENEARAEAAEEE 391
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 28.0 bits (63), Expect = 7.8
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEE 57
K+VKK + + EKEE E+E+ ++
Sbjct: 150 KKKVKKKNLLGGKSEKEEPEEEKTPAPDK 178
>gnl|CDD|217827 pfam03979, Sigma70_r1_1, Sigma-70 factor, region 1.1. Region 1.1
modulates DNA binding by region 2 and 4 when sigma is
unbound by the core RNA polymerase. Region 1.1 is also
involved in promoter binding.
Length = 79
Score = 26.1 bits (58), Expect = 7.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 45 EEEEQEEEEEEEEEEEEQEEE 65
EE + EE +EE +E+ EEE
Sbjct: 57 EEADSEELDEETSSDEDAEEE 77
>gnl|CDD|239572 cd03490, Topoisomer_IB_N_1, Topoisomer_IB_N_1: A subgroup of the
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB. Topo IB proteins include the
monomeric yeast and human topo I and heterodimeric topo
I from Leishmania donvanni. Topo I enzymes are divided
into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topos I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I have putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 217
Score = 27.6 bits (61), Expect = 7.9
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 34 KIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
K ++EE+E+K+ +EE+E +++E ++E F
Sbjct: 90 KNHLEEEKEKKKNLNKEEKEAKKKERAKREYPF 122
>gnl|CDD|219780 pfam08286, Spc24, Spc24 subunit of Ndc80. Spc24 is a component
of the evolutionarily conserved kinetochore-associated
Ndc80 complex and is involved in chromosome
segregation.
Length = 117
Score = 26.9 bits (60), Expect = 8.0
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 31 RVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ + ++KE EE EE+E E +E +E+E +
Sbjct: 26 QSELEELKERLEELEEQEVEGDEVDEDETPVDDS 59
>gnl|CDD|224459 COG1542, COG1542, Uncharacterized conserved protein [Function
unknown].
Length = 593
Score = 27.9 bits (62), Expect = 8.0
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 44 KEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
KE EE+ E E + EE +E LEL LQ
Sbjct: 15 KELEERGEAIEVKALTEEFKERL-------LELELQ 43
>gnl|CDD|220438 pfam09845, DUF2072, Zn-ribbon containing protein (DUF2072). This
archaeal protein has no known function.
Length = 121
Score = 26.7 bits (59), Expect = 8.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 26 VVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
V + KR K +E+ E+ E E +EE E +++ EQ EE
Sbjct: 33 VRERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEG 73
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 27.7 bits (62), Expect = 8.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ ++K K ++ EE E + EEEE EE Q
Sbjct: 23 QFIEKGKFSQQAEELRREAKLEEEEARISEEAQNA 57
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 27.8 bits (63), Expect = 8.1
Identities = 8/27 (29%), Positives = 8/27 (29%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAA 103
>gnl|CDD|224427 COG1510, COG1510, Predicted transcriptional regulators
[Transcription].
Length = 177
Score = 27.3 bits (61), Expect = 8.2
Identities = 10/58 (17%), Positives = 26/58 (44%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQC 80
R + K K ++E E+ ++ + E +E + + E+ ++ + L +L+
Sbjct: 103 KREIDPTKEALKKLLEELNEDLDDRDLTERIKEIKSKLERLLKWSEDYYELLTRLLEF 160
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 27.2 bits (60), Expect = 8.2
Identities = 13/51 (25%), Positives = 29/51 (56%), Gaps = 4/51 (7%)
Query: 24 RVVVDDKRV-KKIKM---KEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKS 70
+ +D++ KK K+ KE ++++ E++E+E + ++E E+ E K
Sbjct: 60 KSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQ 110
>gnl|CDD|224881 COG1970, MscL, Large-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 130
Score = 26.9 bits (60), Expect = 8.2
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEE 59
VK I + EKEE E EE
Sbjct: 91 VKAINKLRRKLEKEEPEAPAPAPPAEEV 118
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 28.0 bits (63), Expect = 8.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
E+EEKEEE ++ EE ++ E FY
Sbjct: 479 EKEEKEEELPKDYEERAKDLPETRRLFY 506
>gnl|CDD|227411 COG5079, SAC3, Nuclear protein export factor [Intracellular
trafficking and secretion / Cell division and chromosome
partitioning].
Length = 646
Score = 28.0 bits (62), Expect = 9.0
Identities = 8/52 (15%), Positives = 19/52 (36%)
Query: 6 FKNSALGGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEE 57
+ S++ I+SS + + + + K + E + + EE
Sbjct: 500 REISSVNFTGCINSSVLNSLTSNITYIDKTTVDEMLMYNLCVFSVSKSKREE 551
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 27.7 bits (61), Expect = 9.0
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE----QEEEFYTK 69
V + K + E+ + E+E EEEEE + E E E+ TK
Sbjct: 181 VREHLWNKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTK 227
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 27.4 bits (61), Expect = 9.5
Identities = 18/84 (21%), Positives = 32/84 (38%), Gaps = 20/84 (23%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE-----EFYTK-SPK---------- 72
D ++K E++K E + EEE E +Q E + Y+K P
Sbjct: 85 DLAEVNERLKALEKKKAELKDLEEEREGILRSKQAEDGKLVKIYSKMKPDAAAAILENLP 144
Query: 73 ---CLELMLQCSPR-ASILLINMA 92
++++ PR ++L M
Sbjct: 145 DEEAAAILMKLKPRKLGLILAKMD 168
>gnl|CDD|226454 COG3945, COG3945, Uncharacterized conserved protein [Function
unknown].
Length = 189
Score = 27.1 bits (60), Expect = 9.5
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEEFY 67
EE E + +EE +E E +
Sbjct: 149 SEELNEVNSECFRFDEETFKETIHERYA 176
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 27.7 bits (61), Expect = 9.5
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
E EE+E EEE+EEEE +E + K +
Sbjct: 768 AESSEEDESSEEEKEEEENKEVSAKRAKKKQR 799
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 27.3 bits (61), Expect = 9.7
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 39 EEEEEKEEEEQEEEE----EEEEEEEEQEEEF 66
EE EEKEE E E E+ EE+
Sbjct: 208 EEAEEKEEAAAETAGVEDAAAAAAEAEEGEEW 239
>gnl|CDD|234635 PRK00104, scpA, segregation and condensation protein A; Reviewed.
Length = 242
Score = 27.5 bits (62), Expect = 9.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 17/55 (30%)
Query: 34 KIKM---KEEEEEKEEEEQEEE--------------EEEEEEEEEQEEEFYTKSP 71
K KM K EE E+EEE+ +E EE +E+EE+ ++++K P
Sbjct: 69 KSKMLLPKVEEFEEEEEDPRQELLEKLIEYKKFKEAAEELKEQEEERAQYFSKPP 123
>gnl|CDD|135898 PRK06397, PRK06397, V-type ATP synthase subunit H; Validated.
Length = 111
Score = 26.4 bits (58), Expect = 9.7
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ-------EEEFYTKSPKCLELMLQCS 81
DK + IK ++E E KE + + EE+ ++ EEE E K +E++ +
Sbjct: 23 DKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKAVEIINKAK 82
Query: 82 PRASILLINMA 92
AS++ + ++
Sbjct: 83 QEASLIKLKIS 93
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,513,581
Number of extensions: 1599178
Number of successful extensions: 19834
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13434
Number of HSP's successfully gapped: 1965
Length of query: 329
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 232
Effective length of database: 6,635,264
Effective search space: 1539381248
Effective search space used: 1539381248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)