RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5811
(329 letters)
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 53.3 bits (127), Expect = 8e-09
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 190 FFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLDV 225
F+++ PC L+ + +++ A + +L +
Sbjct: 3 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSI 38
>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
pond snail (Lymnaea stagnalis) [TaxId: 6523]}
Length = 208
Score = 49.4 bits (117), Expect = 1e-07
Identities = 13/102 (12%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 86 ILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQSETPVD 145
+++ L+ + +C + TC + +GS+ + S ++ +E D
Sbjct: 104 ARVVSDGEVLYMPSIRQRFSCDVSGVDTESG-ATCRIKIGSWTHHSREISVDPTTENSDD 162
Query: 146 IEHGLELAQYALVNMTAIKN-KLVTIGNDVHSIIQINFQLKR 186
E+ + +++ ++++T KN + + + ++++ ++
Sbjct: 163 SEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRK 204
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 250
Score = 48.2 bits (114), Expect = 4e-07
Identities = 11/36 (30%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 190 FFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLDV 225
F+++ T +PC L+ + + F++ PDA ++SL +
Sbjct: 3 FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSI 37
>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 227
Score = 47.8 bits (113), Expect = 4e-07
Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 190 FFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSLDV 225
+FV+ +PC L + + F++ D+ +++L +
Sbjct: 3 YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSI 37
>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
{Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Length = 260
Score = 46.3 bits (109), Expect = 2e-06
Identities = 7/34 (20%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 190 FFVLQTYVPCSLMVCSSWVSFWIDPDAVPARVSL 223
F+V+ PC L+ + ++F++ ++ ++S
Sbjct: 3 FYVINFITPCVLISFLASLAFYLPAES-GEKMST 35
>d2glza1 d.81.3.1 (A:3-151) FwdE-like protein DSY1837 (Dhaf_2201)
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 149
Score = 35.2 bits (81), Expect = 0.004
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 14 VVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEE-EEEEEEQEEEFYT 68
+ H+ V + ++ + E Q + E + +E F
Sbjct: 83 FHFTGTQDIHQFTVSPAVLDHLETLRHPDLSPRERQNKVLEGVQYVLTLEESAFCH 138
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 34.5 bits (79), Expect = 0.006
Identities = 8/47 (17%), Positives = 21/47 (44%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
++ + E + E++E E E ++ E+ F + + L ++
Sbjct: 57 RRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKME 103
Score = 33.3 bits (76), Expect = 0.014
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ K + E +E E E +E+++ EE
Sbjct: 92 KMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEE 129
Score = 32.2 bits (73), Expect = 0.029
Identities = 8/33 (24%), Positives = 16/33 (48%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ EE ++K E +E + +E E + E
Sbjct: 39 RRDPSLEEIQKKLEAAEERRKYQEAELLKHLAE 71
Score = 31.4 bits (71), Expect = 0.064
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + +K E+ E E E ++ EE + +E
Sbjct: 61 QEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKE 96
Score = 31.0 bits (70), Expect = 0.088
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K KM+ +E +E E +E+++ EE
Sbjct: 95 KEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEV 130
Score = 30.2 bits (68), Expect = 0.13
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ +K K K ++ + +E E E QE++
Sbjct: 86 ENNNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKD 124
Score = 30.2 bits (68), Expect = 0.14
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++++ K E E+ +E+++ EE + +E
Sbjct: 99 AQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKE 135
Score = 29.9 bits (67), Expect = 0.24
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++I+ K E E+ + QE E + E+ + E
Sbjct: 45 EEIQKKLEAAEERRKYQEAELLKHLAEKREHER 77
Score = 29.5 bits (66), Expect = 0.24
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ ++E +++ E E+ + +E E + E+
Sbjct: 40 RDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKR 73
Score = 29.1 bits (65), Expect = 0.32
Identities = 7/46 (15%), Positives = 18/46 (39%)
Query: 20 SQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + + K + +E E +E+++ EE + +E
Sbjct: 91 IKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKEL 136
Score = 29.1 bits (65), Expect = 0.33
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+ E+ +E+ + EE + +E +E
Sbjct: 108 NREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 28.7 bits (64), Expect = 0.44
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 36 KMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K++ EE ++ +E E + E+ E + E
Sbjct: 50 KLEAAEERRKYQEAELLKHLAEKREHEREV 79
Score = 28.3 bits (63), Expect = 0.65
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K EE + +E+ ++ E +E E
Sbjct: 79 VIQKAIEENNNFIKMAKEKLAQKMESNKENREA 111
Score = 28.3 bits (63), Expect = 0.69
Identities = 5/36 (13%), Positives = 16/36 (44%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K + + + E E ++ E+ + +E+ ++
Sbjct: 67 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKM 102
Score = 28.3 bits (63), Expect = 0.76
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+R K + + + E+ E E E ++ EE
Sbjct: 56 ERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFI 91
Score = 27.9 bits (62), Expect = 0.97
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 24 RVVVDDKRVKKIKMKEE-EEEKEEEEQEEEEEEEEEEEEQEEE 65
R + + +K + K E E E ++ EE + +E+ +
Sbjct: 58 RKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQ 100
Score = 27.5 bits (61), Expect = 1.1
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ EE +K+ E EE + +E E +
Sbjct: 38 RRRDPSLEEIQKKLEAAEERRKYQEAELLKHLA 70
Score = 25.6 bits (56), Expect = 6.1
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEE 57
+ + + + +E++K EE + +E +E
Sbjct: 109 REAHLAAMLERLQEKDKHAEEVRKNKELKE 138
Score = 25.2 bits (55), Expect = 7.3
Identities = 6/33 (18%), Positives = 17/33 (51%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
K ++ + E +E+++ EE + +E ++
Sbjct: 106 KENREAHLAAMLERLQEKDKHAEEVRKNKELKE 138
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 34.3 bits (78), Expect = 0.016
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 21 QCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
Q R + + KM+ + + +E++ + +E+E+ +E
Sbjct: 236 QKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKE 280
Score = 32.8 bits (74), Expect = 0.040
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+R +K++E+E+ +E Q+E + E ++ + +
Sbjct: 264 ERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTK 299
Score = 32.8 bits (74), Expect = 0.045
Identities = 7/45 (15%), Positives = 22/45 (48%)
Query: 21 QCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +++ +R + +K+ E+ E + + +E+E + +E
Sbjct: 229 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 273
Score = 31.6 bits (71), Expect = 0.11
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ +K+ + + +E+E+ +E ++E + E
Sbjct: 258 QLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNE 292
Score = 31.6 bits (71), Expect = 0.12
Identities = 9/36 (25%), Positives = 20/36 (55%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
RV+ +K +E + +EQE+ +E ++E + +
Sbjct: 255 DRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMK 290
Score = 31.3 bits (70), Expect = 0.13
Identities = 5/45 (11%), Positives = 19/45 (42%)
Query: 21 QCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ ++ ++ + E+ + + Q +E+E + +E+
Sbjct: 230 NEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQ 274
Score = 31.3 bits (70), Expect = 0.13
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+K +E+E+ + +E+E+ +E Q+E
Sbjct: 250 EKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKES 286
Score = 30.9 bits (69), Expect = 0.16
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ K + + + +E+EQ +E ++E + E
Sbjct: 257 VQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNE 292
Score = 29.3 bits (65), Expect = 0.55
Identities = 5/37 (13%), Positives = 16/37 (43%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D+ + + K +E+++ +E ++E +
Sbjct: 255 DRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN 291
Score = 28.9 bits (64), Expect = 0.76
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ + K +M E++E +E ++ E+ E + Q +
Sbjct: 225 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLK 261
Score = 28.6 bits (63), Expect = 0.97
Identities = 6/45 (13%), Positives = 17/45 (37%)
Query: 21 QCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ R K+ +E ++ E+ + + + +E+E
Sbjct: 225 EMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269
Score = 28.6 bits (63), Expect = 1.1
Identities = 6/36 (16%), Positives = 19/36 (52%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ ++ E+ E++E+ +E ++ E+ E +
Sbjct: 220 AKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 255
Score = 28.2 bits (62), Expect = 1.4
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
KM E + K E+ E++E +E +Q E
Sbjct: 218 ASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTE 250
Score = 27.8 bits (61), Expect = 1.9
Identities = 6/47 (12%), Positives = 20/47 (42%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
+ + +E ++ E+ E + + +++E + E +L+
Sbjct: 233 MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLK 279
Score = 27.4 bits (60), Expect = 2.3
Identities = 4/36 (11%), Positives = 19/36 (52%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ ++ + + +E+E+ +E ++E + + ++
Sbjct: 260 LKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 295
Score = 27.4 bits (60), Expect = 2.3
Identities = 6/37 (16%), Positives = 17/37 (45%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
D+ + + + + E E + E + + E + + E+
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 232
Score = 26.2 bits (57), Expect = 6.0
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQ 79
D +K K E E K E Q + E + + E+ K E + Q
Sbjct: 196 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQ 247
Score = 26.2 bits (57), Expect = 6.3
Identities = 8/45 (17%), Positives = 20/45 (44%)
Query: 21 QCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
++ +RVK + + E +++ E+ E++E +E
Sbjct: 200 TEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEH 244
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 32.1 bits (73), Expect = 0.018
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEE--EEEEQEEEFY 67
R V K K ++ + + + EEQ + +E E EEE QE+E
Sbjct: 50 FRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENL 96
>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal
domain {Bacillus stearothermophilus [TaxId: 1422]}
Length = 323
Score = 31.1 bits (69), Expect = 0.16
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 12/57 (21%)
Query: 18 SSSQCHRVVVDDKR--------VKKIKMKEEEE----EKEEEEQEEEEEEEEEEEEQ 62
S + V D R + +E K E E + E+ E
Sbjct: 266 EKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVISVWKVEAEDKTEKLAAALEHHH 322
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 301
Score = 30.7 bits (69), Expect = 0.22
Identities = 10/54 (18%), Positives = 23/54 (42%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSP 82
++R + I +E+ + ++ + +E E E E +E E ++ P
Sbjct: 64 EQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIP 117
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 29.5 bits (66), Expect = 0.23
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
R++ + + EEE ++++E + +++ E Q+E
Sbjct: 97 SSRLENLGIPEEELLRQQQELFAKARQQQAELAQQE 132
Score = 26.8 bits (59), Expect = 2.1
Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 23 HRVVVDDKRVKKIKMKE---EEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ V +R +++ EEE ++QE + +++ E ++
Sbjct: 86 CKTVALKRRKASSRLENLGIPEEELLRQQQELFAKARQQQAELAQQ 131
Score = 25.3 bits (55), Expect = 7.5
Identities = 8/46 (17%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE--EQEEEFYTKS 70
+ + + + K ++ + E EEE Q++E + K+
Sbjct: 76 ISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQELFAKA 121
>d1ynba1 a.211.1.1 (A:7-173) Hypothetical protein AF1432 {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 167
Score = 30.0 bits (67), Expect = 0.23
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 28 DDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQC 80
D ++ + + +EE EE+ E + + + E Y LEL Q
Sbjct: 77 DLHKIARRYVSCDEEGAREEQ---LSWMESKPDFSDVEVYVSDADKLELAFQG 126
>d2j01t1 b.34.5.6 (T:1-138) Ribosomal protein L19 {Thermus
thermophilus [TaxId: 274]}
Length = 138
Score = 29.6 bits (66), Expect = 0.25
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
+ ++I+ K + K ++ E +EE ++
Sbjct: 104 NLSDREIRRKLRADRKRIDQDRAAERAAKEEAQK 137
>d1qkla_ a.143.1.2 (A:) RPB6 {Human (Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 29.4 bits (66), Expect = 0.26
Identities = 6/29 (20%), Positives = 17/29 (58%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
M + E+ + ++ ++ EE+E ++ + E
Sbjct: 1 MSDNEDNFDGDDFDDVEEDEGLDDLENAE 29
Score = 26.7 bits (59), Expect = 2.0
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
++ ++ EE+E ++ E EEE ++ E +
Sbjct: 9 DGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGER 44
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 30.4 bits (68), Expect = 0.26
Identities = 2/35 (5%), Positives = 11/35 (31%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+R + ++++ + ++ E
Sbjct: 236 AERDRIAAQGLAPQDRDARIAQLRQQTFTAPGEAI 270
Score = 30.0 bits (67), Expect = 0.34
Identities = 1/38 (2%), Positives = 12/38 (31%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
++ ++ + ++ + + ++ E
Sbjct: 231 YQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPGE 268
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 30.0 bits (67), Expect = 0.29
Identities = 11/49 (22%), Positives = 25/49 (51%)
Query: 14 VVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
V +S+ + + + K + +++E E+ ++ EEEE + E E+
Sbjct: 202 VSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAEREK 250
Score = 26.2 bits (57), Expect = 6.0
Identities = 9/40 (22%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 25 VVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+ + I++ +++E E+ ++ EEEE + E+E+
Sbjct: 214 TLTRENGKTVIRVLKQKEV---EQLIKKHEEEEAKAEREK 250
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1
{Thermotoga maritima [TaxId: 2336]}
Length = 333
Score = 30.5 bits (68), Expect = 0.30
Identities = 13/108 (12%), Positives = 32/108 (29%), Gaps = 2/108 (1%)
Query: 35 IKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRASILLINMALT 94
I++ EE E E E ++ E+E ++ +E ++ + ++ +
Sbjct: 49 IELLREEGENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDL 108
Query: 95 LFCFRLTLTATC--KMFLRKFPFDTQTCPLLVGSFGYTSNDVKYKWQS 140
+ D +V + K++S
Sbjct: 109 FRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYES 156
Score = 28.5 bits (63), Expect = 0.95
Identities = 15/63 (23%), Positives = 29/63 (46%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRASILLI 89
+ ++ I + +E ++ E EE E E E E+ E+E + L L+ + +I+ I
Sbjct: 33 EEIENITNRIKETQEFIELLREEGENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEI 92
Query: 90 NMA 92
Sbjct: 93 RPG 95
>d1us7b_ a.205.1.1 (B:) Hsp90 co-chaperone CDC37 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 201
Score = 29.3 bits (66), Expect = 0.46
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 18 SSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ Q D+ K +++ + + E+ +E EEEE ++
Sbjct: 97 ADRQYMEGFNDELEAFKERVRGRAKLRIEKAMKEYEEEERKKRLGPGG 144
Score = 27.8 bits (62), Expect = 1.5
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPK 72
+RV+ E+ +E E+EE ++ E Y P+
Sbjct: 114 ERVRGRAKLRIEKAMKEYEEEERKKRLGPGGLDPVEVYESLPE 156
>d1l4sa_ d.204.1.1 (A:) Ribosome binding protein Y (YfiA homologue)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 27.9 bits (62), Expect = 0.72
Identities = 8/32 (25%), Positives = 16/32 (50%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
++++ K++ K E ++ EE EEE
Sbjct: 81 ERQLNKLQHKGEARRAATSVKDANFVEEVEEE 112
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 28.5 bits (64), Expect = 0.82
Identities = 7/29 (24%), Positives = 20/29 (68%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
+ ++E+K++ +E+++ E E+ EE++
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEEDY 130
Score = 28.5 bits (64), Expect = 0.91
Identities = 6/29 (20%), Positives = 18/29 (62%)
Query: 27 VDDKRVKKIKMKEEEEEKEEEEQEEEEEE 55
++ +K ++ +E+++ E+E+ EE+
Sbjct: 101 FQLQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 26.2 bits (58), Expect = 5.0
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
+ K ++++ +E++Q E E+ EE+
Sbjct: 99 DYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 28.8 bits (64), Expect = 0.85
Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 9 SALGGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQ 62
AL VV V+ + +K+ EE ++ + E+E+EE E+++Q
Sbjct: 192 KALLEVVQSGGKNIELAVMRRD--QSLKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA,
nucleotide-binding domains {Mycobacterium tuberculosis
[TaxId: 1773]}
Length = 288
Score = 28.8 bits (64), Expect = 0.87
Identities = 19/126 (15%), Positives = 34/126 (26%), Gaps = 18/126 (14%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRASILLI 89
K + ++ EK + + + +E + +++ L +
Sbjct: 35 KVADYVGTLSDDVEKLTDAELRAKTDEFKRRLADQKNPETLDDLLPEAFAV----AREAA 90
Query: 90 NMALTLFCFRLTLTATCKMFLRKFPF------DTQTCPLLV--------GSFGYTSNDVK 135
L F + + + L T TC L G T ND
Sbjct: 91 WRVLDQRPFDVQVMGAAALHLGNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYL 150
Query: 136 YKWQSE 141
K SE
Sbjct: 151 AKRDSE 156
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 28.5 bits (64), Expect = 0.94
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 38 KEEEEEKEEEEQEEEEEEEEEEEEQEEEF 66
K + E +++ +EE+ + +EE E+ +E+
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKLLKEY 138
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 202
Score = 28.2 bits (63), Expect = 1.1
Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 268 DLPDTYLEQNIRHYPLANNEAESVYSINEAEPKVYSTRLFLLTILLRNVFS 318
L D L + I+ YPLA + ES++SI F L VF+
Sbjct: 48 GLEDLSLAEAIKKYPLA--KVESLFSIRHEN----GAVEFFREALSPAVFA 92
>d1gsma2 b.1.1.4 (A:91-206) Mucosal addressin cell adhesion
molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 27.2 bits (60), Expect = 1.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 41 EEEKEEEEQEEEEEEEEEEEEQEEE 65
+E E + E +EEEEE Q +E
Sbjct: 43 GQELEGAQALGPEVQEEEEEPQGDE 67
Score = 26.1 bits (57), Expect = 3.5
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRA 84
+E E + E +EEEEE + +++ F L + P A
Sbjct: 44 QELEGAQALGPEVQEEEEEPQGDEDVLFRVTERWRLPPLGTPVPPA 89
Score = 24.9 bits (54), Expect = 8.2
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 40 EEEEKEEEEQEEEEEEEEEEEEQEEE 65
+E + + E +EEEEE + +E+
Sbjct: 43 GQELEGAQALGPEVQEEEEEPQGDED 68
>d2crua1 a.5.6.1 (A:8-112) Programmed cell death protein 5 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 105
Score = 26.6 bits (59), Expect = 1.7
Identities = 4/33 (12%), Positives = 15/33 (45%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
+++ ++ E + + + ++E + E E
Sbjct: 1 LRRQRLAELQAKHGDPGDAAQQEAKHREAEMRN 33
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 27.5 bits (61), Expect = 1.8
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 268 DLPDTYLEQNIRHYPLANNEAESVYSINE 296
L D YL + I+ YPLA + ES++ +
Sbjct: 48 GLEDRYLAEEIKKYPLA--KVESLFHLRH 74
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 26.9 bits (59), Expect = 3.0
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 23 HRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
HRV ++ + + +EE EEK E+ + EE+ E
Sbjct: 204 HRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARA 246
Score = 25.8 bits (56), Expect = 6.7
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSP 71
++K+K EE+ E + EE + ++E E P
Sbjct: 226 NILEKVKAAMTEEDLAELARATEELKLKQETPDPPEALRCVP 267
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 27.3 bits (59), Expect = 3.1
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEE 61
V K V ++K +++ + ++EE EE ++E
Sbjct: 327 SKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 26.9 bits (59), Expect = 3.5
Identities = 8/34 (23%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
+ KE ++ +E EE+ + +E+ E+E
Sbjct: 298 NMFLQAV-KENQKRRETEEKMRRAKLAKEKAEKE 330
>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH)
{Streptococcus pyogenes [TaxId: 1314]}
Length = 196
Score = 26.5 bits (57), Expect = 4.3
Identities = 17/142 (11%), Positives = 39/142 (27%)
Query: 1 MKRNCFKNSALGGVVSISSSQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEE 60
MK + +G + + S + V + D K+ ++E E + ++
Sbjct: 1 MKIAVAGSGYVGLSLGVLLSLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLS 60
Query: 61 EQEEEFYTKSPKCLELMLQCSPRASILLINMALTLFCFRLTLTATCKMFLRKFPFDTQTC 120
+ + K EL++ +P IN T + +
Sbjct: 61 IKATLDSKAAYKEAELVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIP 120
Query: 121 PLLVGSFGYTSNDVKYKWQSET 142
+ + + E
Sbjct: 121 IGFITEMRQKFQTDRIIFSPEF 142
>d2doda1 a.159.2.1 (A:651-719) Transcription elongation regulator
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 69
Score = 24.7 bits (54), Expect = 4.6
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 20 SQCHRVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEE 57
+ +V D R + KE ++ ++ + EEE
Sbjct: 32 EKELHKIVFDPRYLLLNPKERKQVFDQYVKTRAEEERR 69
>d1lr1a_ a.155.1.1 (A:) H1 protein (H-NS) {Escherichia coli
[TaxId: 562]}
Length = 57
Score = 24.4 bits (53), Expect = 4.6
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 37 MKEEEEEKEEEEQEEEEEEEEEEEEQEE 64
M E+ E E +EEE E EE+
Sbjct: 28 MLEKLEVVVNERREEESAAAAEVEERTR 55
>d1r9da_ c.7.1.1 (A:) Glycerol dehydratase DhaB1 {Clostridium
butyricum [TaxId: 1492]}
Length = 786
Score = 26.7 bits (59), Expect = 4.7
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 24 RVVVDDKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPR 83
V VD +V ++ E +E Q E+ + + ++E+F E + R
Sbjct: 163 HVSVDYGKVLRVGFNGIINEAKE--QLEKNRSIDPDFIKKEKFLNSVIISCEAAITYVNR 220
Query: 84 ASILLINMA 92
+ +A
Sbjct: 221 YAKKAKEIA 229
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 25.6 bits (56), Expect = 5.2
Identities = 7/36 (19%), Positives = 20/36 (55%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
+ +++ + +E E +++ EE++ +EE Q +
Sbjct: 95 EEAERLSESLKLRYEEAEVRKKLEEKDRQEEAQRLQ 130
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 26.5 bits (58), Expect = 5.8
Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 12/93 (12%)
Query: 148 HGLELAQYALVNMTAIKNKLVTIGND------VHSIIQINFQLKRNTGFFVLQTYVPCSL 201
E L + A+ +V IG H ++ + QL + +L +L
Sbjct: 70 ERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIK---IQLLADL---NL 123
Query: 202 MVCSSWVSFWIDPDAVPARVSLDVDKQIKQWCR 234
V D D V + L +K + +W
Sbjct: 124 KKTPQLVELLEDSDDVEELLRLPPEKVLLKWMN 156
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
(Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Length = 102
Score = 25.0 bits (55), Expect = 5.8
Identities = 8/38 (21%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTK 69
+K++ KEE ++E + +E + +E++ + + K
Sbjct: 10 LKRL-TKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLK 46
>d1p32a_ d.25.1.1 (A:) Acidic mitochondrial matrix protein p32
{Human (Homo sapiens) [TaxId: 9606]}
Length = 209
Score = 26.1 bits (57), Expect = 6.2
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEE 65
EEE + ++ EE+E E
Sbjct: 66 IPPTFDGEEEPSQGQKVEEQEPELTST 92
Score = 25.3 bits (55), Expect = 8.4
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 39 EEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKC-LELMLQCSPRASILLINM 91
+ EEE + ++ EE+E E K+ L+L C +
Sbjct: 71 DGEEEPSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQED 124
>d2ap3a1 a.24.27.1 (A:12-196) Hypothetical protein MW0975 (SA0943)
{Staphylococcus aureus [TaxId: 1280]}
Length = 185
Score = 25.4 bits (54), Expect = 7.4
Identities = 7/33 (21%), Positives = 20/33 (60%)
Query: 33 KKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEE 65
K+IK ++ +K ++++E + ++ E +E+
Sbjct: 5 KEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEK 37
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA,
nucleotide-binding domains {Bacillus subtilis [TaxId:
1423]}
Length = 273
Score = 25.7 bits (56), Expect = 8.1
Identities = 22/155 (14%), Positives = 38/155 (24%), Gaps = 13/155 (8%)
Query: 30 KRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQEEEFYTKSPKCLELMLQCSPRASILLI 89
K I + E ++ + + E +E ++ AS +
Sbjct: 21 KIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGATTDDLLVE---AFAVVREASRRVT 77
Query: 90 NMALTLFCFRLTLTATCKMFLRKFPFD--TQTCPLLV--------GSFGYTSNDVKYKWQ 139
M + + T T L V G T N+
Sbjct: 78 GMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRD 137
Query: 140 SETPVDIEHGLELAQYALVNMTAIKNKLVTIGNDV 174
+E I L L +N + K D+
Sbjct: 138 AEQMGKIFEFLGLTVGLNLNSMSKDEKREAYAADI 172
>d2clyb1 f.53.1.1 (B:4-123) ATP synthase subunit d, mitochondrial
{Cow (Bos taurus) [TaxId: 9913]}
Length = 120
Score = 24.8 bits (54), Expect = 8.6
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 29 DKRVKKIKMKEEEEEKEEEEQEEEEEEEEEEEEQE 63
DK ++ +E+E+ K E + + +E E+E
Sbjct: 80 DKYTAQVDAEEKEDVKSCAEFLTQSKTRIQEYEKE 114
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 109
Score = 24.8 bits (54), Expect = 8.8
Identities = 3/22 (13%), Positives = 7/22 (31%)
Query: 32 VKKIKMKEEEEEKEEEEQEEEE 53
V ++ E E+ +
Sbjct: 82 VLPYNTLRKKGEVEQPGDTQVV 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.133 0.392
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,211,219
Number of extensions: 57626
Number of successful extensions: 755
Number of sequences better than 10.0: 1
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 123
Length of query: 329
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 243
Effective length of database: 1,226,816
Effective search space: 298116288
Effective search space used: 298116288
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)