BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5812
(365 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 347
Score = 202 bits (513), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 166/292 (56%), Gaps = 16/292 (5%)
Query: 56 GYDIRLRPNF-GGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDE- 113
GYD R+RP G P+ V +++ + + I V+M+Y+ + L + W D RL++ + +
Sbjct: 13 GYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDG 72
Query: 114 -----VLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTL 168
+LT+ +IW+PDTFF N+K ++ H + + N L+R++ DG++ Y +R + L
Sbjct: 73 QPDFVILTV----GHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVL 128
Query: 169 ACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKE-TPVR---GVEEAQLPQFTILGHE 224
+C M L YYP+D Q C++++ SY YT D+ WKE +P++ G+ + LP F +
Sbjct: 129 SCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYLWKEHSPLQLKVGLSSS-LPSFQLTNTS 187
Query: 225 TNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVA 284
T TG Y L + +L+R +++ Q Y+PS ++V++SWVSFW + A ARV
Sbjct: 188 TTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVT 247
Query: 285 XXXXXXXXXXXXXXXXRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
S LP +SY+KAID+++ C F+F ALLE+A VN+
Sbjct: 248 LGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNH 299
>pdb|3EI0|A Chain A, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|B Chain B, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|C Chain C, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|D Chain D, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
pdb|3EI0|E Chain E, Structure Of The E221a Mutant Of The Gloebacter Violaceus
Pentameric Ligand Gated Ion Channnel (Glic)
Length = 317
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 115/276 (41%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 9 PPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 68
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 69 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 124
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 125 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 184
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + +A V
Sbjct: 185 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYAANVTLVVSTLIAHIAFNILV 242
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
++LP+ Y+ + M ++F F A++E +Y
Sbjct: 243 ETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 278
>pdb|3EAM|A Chain A, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|B Chain B, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|C Chain C, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|D Chain D, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|3EAM|E Chain E, An Open-Pore Structure Of A Bacterial Pentameric Ligand-
Gated Ion Channel
pdb|4HFI|A Chain A, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|B Chain B, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|C Chain C, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|D Chain D, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4HFI|E Chain E, The Glic Pentameric Ligand-gated Ion Channel At 2.4 A
Resolution
pdb|4IL4|A Chain A, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|B Chain B, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|C Chain C, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|D Chain D, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
pdb|4IL4|E Chain E, The Pentameric Ligand-gated Ion Channel Glic In Complex
With Se-ddm
Length = 317
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 9 PPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 68
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 69 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 124
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 125 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 184
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + A V
Sbjct: 185 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFNILV 242
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
++LP+ Y+ + M ++F F A++E +Y
Sbjct: 243 ETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 278
>pdb|3EHZ|A Chain A, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|B Chain B, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|C Chain C, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|D Chain D, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|3EHZ|E Chain E, X-Ray Structure Of The Pentameric Ligand Gated Ion Channel
Of Gloebacter Violaceus (Glic) In A Presumptive Open
Conformation
pdb|2XQ3|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ3|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Br-Lidocaine
pdb|2XQ4|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ4|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetramethylarsonium (Tmas)
pdb|2XQ5|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ5|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetraethylarsonium (Teas)
pdb|2XQ6|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ6|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cesium Ion (Cs+)
pdb|2XQ7|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ7|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Cadmium Ion (Cd2+)
pdb|2XQ8|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQ8|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Zinc Ion (Zn2+)
pdb|2XQA|A Chain A, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|B Chain B, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|C Chain C, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|D Chain D, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|2XQA|E Chain E, Pentameric Ligand Gated Ion Channel Glic In Complex With
Tetrabutylantimony (Tbsb)
pdb|4F8H|A Chain A, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|B Chain B, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|C Chain C, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|D Chain D, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
pdb|4F8H|E Chain E, X-Ray Structure Of The Anesthetic Ketamine Bound To The
Glic Pentameric Ligand-Gated Ion Channel
Length = 317
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 9 PPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 68
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 69 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 124
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 125 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 184
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + A V
Sbjct: 185 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFNILV 242
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
++LP+ Y+ + M ++F F A++E +Y
Sbjct: 243 ETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 278
>pdb|3P4W|A Chain A, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|B Chain B, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|C Chain C, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|D Chain D, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P4W|E Chain E, Structure Of Desflurane Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|A Chain A, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|B Chain B, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|C Chain C, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|D Chain D, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
pdb|3P50|E Chain E, Structure Of Propofol Bound To A Pentameric Ligand-Gated
Ion Channel, Glic
Length = 318
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 9 PPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 68
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 69 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 124
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 125 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 184
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + A V
Sbjct: 185 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFNILV 242
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
++LP+ Y+ + M ++F F A++E +Y
Sbjct: 243 ETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 278
>pdb|4ILC|A Chain A, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|B Chain B, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|C Chain C, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|D Chain D, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
pdb|4ILC|E Chain E, The Glic Pentameric Ligand-gated Ion Channel In Complex
With Sulfates
Length = 320
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 13 PPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 72
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 73 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 128
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 129 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 188
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + A V
Sbjct: 189 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFNILV 246
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
++LP+ Y+ + M ++F F A++E +Y
Sbjct: 247 ETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 282
>pdb|3TLW|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3TLW|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Oxidized Mutant In A Locally-Closed Conformation (Lc2
Subtype)
pdb|3UU4|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UU4|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In The Crystal In A Locally-Closed
Conformation (Lc1 Subtype)
pdb|3UUB|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|F Chain F, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|G Chain G, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|H Chain H, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|I Chain I, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
pdb|3UUB|J Chain J, The Glic Pentameric Ligand-Gated Ion Channel Loop2-21'
Mutant Reduced In Solution
Length = 321
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 113/276 (40%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 13 PPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 72
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 73 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 128
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 129 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 188
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + A V
Sbjct: 189 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFNILV 246
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
+ LP+ Y+ + M ++F F A++E +Y
Sbjct: 247 ETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 282
>pdb|2XQ9|A Chain A, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|B Chain B, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|C Chain C, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|D Chain D, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
pdb|2XQ9|E Chain E, Pentameric Ligand Gated Ion Channel Glic Mutant E221a In
Complex With Tetraethylarsonium (Teas)
Length = 317
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 9 PPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 68
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 69 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 124
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 125 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 184
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + A V
Sbjct: 185 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYDANVTLVVSTLIAHIAFNILV 242
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
++LP+ Y+ + M ++F F A++E +Y
Sbjct: 243 ETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 278
>pdb|3UU3|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU3|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU5|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
pdb|3UU5|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-20'
Mutant Reduced In Solution
Length = 321
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 113/276 (40%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 13 PPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 72
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 73 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 128
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 129 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 188
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + A V
Sbjct: 189 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFNILV 246
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
+LP+ Y+ + M ++F F A++E +Y
Sbjct: 247 ECNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 282
>pdb|4IL9|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4IL9|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Bromide
pdb|4ILA|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILA|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Cesium
pdb|4ILB|A Chain A, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|B Chain B, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|C Chain C, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|D Chain D, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
pdb|4ILB|E Chain E, The Pentameric Ligand-gated Ion Channel Glic A237f In
Complex With Rubidium
Length = 320
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 13 PPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 72
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 73 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 128
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 129 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 188
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + A V
Sbjct: 189 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIFFNILV 246
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
++LP+ Y+ + M ++F F A++E +Y
Sbjct: 247 ETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 282
>pdb|3TLT|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
pdb|3TLT|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel H11'f Mutant
In A Locally-Closed Conformation (Lc1 Subtype)
Length = 321
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 13 PPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 72
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 73 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 128
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 129 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 188
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + A V
Sbjct: 189 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAFIAFNILV 246
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
++LP+ Y+ + M ++F F A++E +Y
Sbjct: 247 ETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 282
>pdb|3LSV|A Chain A, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|B Chain B, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|C Chain C, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|D Chain D, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
pdb|3LSV|E Chain E, Structure Of The A237f Mutant Of The Pentameric Ligand
Gated Channel From Gloeobacter Violaceus
Length = 317
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 9 PPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 68
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 69 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 124
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 125 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 184
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + A V
Sbjct: 185 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIFFNILV 242
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
++LP+ Y+ + M ++F F A++E +Y
Sbjct: 243 ETNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 278
>pdb|3TLS|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
pdb|3TLS|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel E19'p Mutant
In A Locally-Closed Conformation (Lc2 Subtype)
Length = 321
Score = 74.3 bits (181), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/276 (21%), Positives = 114/276 (41%), Gaps = 8/276 (2%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 13 PPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 72
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 73 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 128
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 129 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 188
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXXXXXXXX 300
++L+ + YF + LP + I+ +SW +FW + A V
Sbjct: 189 DYQLRISRQYFSYIPNIILPMLFILFISWTAFW--STSYEANVTLVVSTLIAHIAFNILV 246
Query: 301 RSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
++LP+ Y+ + M ++F F A++E +Y
Sbjct: 247 PTNLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHY 282
>pdb|3TLV|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3TLV|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Oxidized Mutant In A Locally-Closed Conformation (Lc3
Subtype)
pdb|3UU6|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
pdb|3UU6|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-22'
Mutant Reduced In Solution
Length = 321
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 115/277 (41%), Gaps = 10/277 (3%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 13 PPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 72
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 73 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 128
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 129 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 188
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFW-INHEATSARVAXXXXXXXXXXXXXXX 299
++L+ + YF + LP + I+ +SW +FW ++EA V
Sbjct: 189 DYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAFNILVET 248
Query: 300 XRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
P ++Y AI + M ++F F A++E +Y
Sbjct: 249 NCPKTPYMTYTGAI---IFMIYLFYFVAVIEVTVQHY 282
>pdb|3TLU|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3TLU|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Oxidized Mutant In A Locally-Closed Conformation (Lc1
Subtype)
pdb|3UU8|A Chain A, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|B Chain B, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|C Chain C, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|D Chain D, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
pdb|3UU8|E Chain E, The Glic Pentameric Ligand-Gated Ion Channel Loop2-24'
Mutant Reduced In Solution
Length = 321
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 115/277 (41%), Gaps = 10/277 (3%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 13 PPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 72
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D YP D+Q
Sbjct: 73 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQ 128
Query: 183 NCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSL 242
+ + ++V+ V ++ L + I + A L
Sbjct: 129 TLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKL 188
Query: 243 SFKLQRNIGYFVF--QTYLPSILIVMLSWVSFW-INHEATSARVAXXXXXXXXXXXXXXX 299
++L+ + YF + LP + I+ +SW +FW ++EA V
Sbjct: 189 DYQLRISRQYFSYIPNIILPMLFILFISWTAFWSTSYEANVTLVVSTLIAHIAFNILVET 248
Query: 300 XRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
P ++Y AI + M ++F F A++E +Y
Sbjct: 249 NLPCTPYMTYTGAI---IFMIYLFYFVAVIEVTVQHY 282
>pdb|4AQ5|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|B Chain B, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 493
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/241 (24%), Positives = 120/241 (49%), Gaps = 15/241 (6%)
Query: 50 ISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAF 108
+S L Y+ ++RP+ GD + V + LT+ S ++E + + T +++LN W D RL +
Sbjct: 32 LSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQW 91
Query: 109 --SSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTT 166
++ + + LS ++ +W PD N+ + N LV+ G++++
Sbjct: 92 DPAAYEGIKDLSIP-SDDVWQPDIVLMNNNDGSFEITLHVNVLVQ--HTGAVSWHPSAIY 148
Query: 167 TLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMY--WKETPVRGVEEAQLPQ--FTILG 222
+C + + Y+P D QNCT+ +SY Y +V++ R V+E + Q FT G
Sbjct: 149 RSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQHALDAKGEREVKEIMINQDAFTENG 208
Query: 223 -----HETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHE 277
H+ + + + +Y+ ++ +QR +++ T +P ILI +L+ + F++ +
Sbjct: 209 QWSIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPD 268
Query: 278 A 278
A
Sbjct: 269 A 269
>pdb|2BG9|B Chain B, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/239 (24%), Positives = 119/239 (49%), Gaps = 20/239 (8%)
Query: 50 ISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAF 108
+S L Y+ ++RP+ GD + V + LT+ S ++E + + T +++LN W D RL +
Sbjct: 8 LSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQW 67
Query: 109 --SSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTT 166
++ + + LS ++ +W PD N+ + N LV+ G++++
Sbjct: 68 DPAAYEGIKDLSIP-SDDVWQPDIVLMNNNDGSFEITLHVNVLVQ--HTGAVSWHPSAIY 124
Query: 167 TLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQ--FTILG-- 222
+C + + Y+P D QNCT+ +SY Y +V++ + +A + Q FT G
Sbjct: 125 RSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVIL-------QHALDAMINQDAFTENGQW 177
Query: 223 ---HETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEA 278
H+ + + + +Y+ ++ +QR +++ T +P ILI +L+ + F++ +A
Sbjct: 178 SIEHKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA 236
>pdb|3UQ5|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
pdb|3UQ5|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240a F247l (L9a
F16l) In The Presence Of 10 Mm Cysteamine
Length = 324
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 114/275 (41%), Gaps = 21/275 (7%)
Query: 69 PLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEK---- 124
P+ V + + I ++ + Y + Y+ W + + D+ L + E+
Sbjct: 13 PVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTG-KPRKTPGDKPLIVENTQIERWINN 71
Query: 125 -IWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQN 183
+WVP F N S NK + L DG + Y RF + + MD +P D Q
Sbjct: 72 GLWVPALEFINVVGS----PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQ 127
Query: 184 CTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILG----HETNDRKEKLAT----- 234
+E+E + Y + + ++ ++ ++ I G H ++ R + L++
Sbjct: 128 FVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQ 187
Query: 235 GTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXX 294
+ R+++ RN Y+++ LP LI+ SW FW+ E+ S R+
Sbjct: 188 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMATVV 245
Query: 295 XXXXXXRSSLPRISYVKAIDIYLVMCFVFVFAALL 329
+ LPR+ Y ID ++ + +FAA+L
Sbjct: 246 AYALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280
>pdb|3UQ7|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
pdb|3UQ7|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant L240s F247l (L9s
F16l) In Presence Of 10 Mm Cysteamine
Length = 324
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 114/275 (41%), Gaps = 21/275 (7%)
Query: 69 PLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEK---- 124
P+ V + + I ++ + Y + Y+ W + + D+ L + E+
Sbjct: 13 PVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTG-KPRKTPGDKPLIVENTQIERWINN 71
Query: 125 -IWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQN 183
+WVP F N S NK + L DG + Y RF + + MD +P D Q
Sbjct: 72 GLWVPALEFINVVGS----PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQ 127
Query: 184 CTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILG----HETNDRKEKLAT----- 234
+E+E + Y + + ++ ++ ++ I G H ++ R + L++
Sbjct: 128 FVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQ 187
Query: 235 GTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXX 294
+ R+++ RN Y+++ LP LI+ SW FW+ E+ S R+
Sbjct: 188 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMSTVV 245
Query: 295 XXXXXXRSSLPRISYVKAIDIYLVMCFVFVFAALL 329
+ LPR+ Y ID ++ + +FAA+L
Sbjct: 246 AYALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280
>pdb|3UQ4|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
pdb|3UQ4|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) Mutant F247l (F16l)
Length = 324
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 114/275 (41%), Gaps = 21/275 (7%)
Query: 69 PLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEK---- 124
P+ V + + I ++ + Y + Y+ W + + D+ L + E+
Sbjct: 13 PVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTG-KPRKTPGDKPLIVENTQIERWINN 71
Query: 125 -IWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQN 183
+WVP F N S NK + L DG + Y RF + + MD +P D Q
Sbjct: 72 GLWVPALEFINVVGS----PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQ 127
Query: 184 CTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILG----HETNDRKEKLAT----- 234
+E+E + Y + + ++ ++ ++ I G H ++ R + L++
Sbjct: 128 FVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQ 187
Query: 235 GTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXX 294
+ R+++ RN Y+++ LP LI+ SW FW+ E+ S R+
Sbjct: 188 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 245
Query: 295 XXXXXXRSSLPRISYVKAIDIYLVMCFVFVFAALL 329
+ LPR+ Y ID ++ + +FAA+L
Sbjct: 246 AYALYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 280
>pdb|3RQU|A Chain A, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|B Chain B, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|C Chain C, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|D Chain D, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|E Chain E, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|F Chain F, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|G Chain G, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|H Chain H, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|I Chain I, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQU|J Chain J, Crystal Structure Of A Prokaryotic Pentameric Ligand-Gated
Ion Channel, Elic
pdb|3RQW|A Chain A, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|B Chain B, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|C Chain C, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|D Chain D, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|E Chain E, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|F Chain F, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|G Chain G, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|H Chain H, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|I Chain I, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|3RQW|J Chain J, Crystal Structure Of Acetylcholine Bound To A Prokaryotic
Pentameric Ligand-Gated Ion Channel, Elic
pdb|2YN6|A Chain A, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|B Chain B, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|C Chain C, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|D Chain D, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
pdb|2YN6|E Chain E, Pentameric Ligand-Gated Ion Channel Elic In Complex With
Barium
Length = 322
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 114/275 (41%), Gaps = 21/275 (7%)
Query: 69 PLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEK---- 124
P+ V + + I ++ + Y + Y+ W + + D+ L + E+
Sbjct: 11 PVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTG-KPRKTPGDKPLIVENTQIERWINN 69
Query: 125 -IWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQN 183
+WVP F N S NK + L DG + Y RF + + MD +P D Q
Sbjct: 70 GLWVPALEFINVVGS----PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQ 125
Query: 184 CTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILG----HETNDRKEKLAT----- 234
+E+E + Y + + ++ ++ ++ I G H ++ R + L++
Sbjct: 126 FVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQ 185
Query: 235 GTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXX 294
+ R+++ RN Y+++ LP LI+ SW FW+ E+ S R+
Sbjct: 186 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 243
Query: 295 XXXXXXRSSLPRISYVKAIDIYLVMCFVFVFAALL 329
+ LPR+ Y ID ++ + +FAA+L
Sbjct: 244 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 278
>pdb|4A97|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A97|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Zopiclone
pdb|4A98|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|4A98|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With
Bromoflurazepam
pdb|2YOE|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|2YOE|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic) In Complex With Gaba
And Flurazepam
pdb|3ZKR|A Chain A, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|B Chain B, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|C Chain C, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|D Chain D, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|E Chain E, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|F Chain F, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|G Chain G, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|H Chain H, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|I Chain I, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
pdb|3ZKR|J Chain J, X-ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (elic) In Complex With
Bromoform
Length = 307
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/275 (22%), Positives = 113/275 (41%), Gaps = 21/275 (7%)
Query: 69 PLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEK---- 124
P+ V + + I ++ + Y + Y+ W + D+ L + E+
Sbjct: 1 PVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRK-TPGDKPLIVENTQIERWINN 59
Query: 125 -IWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQN 183
+WVP F N S NK + L DG + Y RF + + MD +P D Q
Sbjct: 60 GLWVPALEFINVVGS----PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQ 115
Query: 184 CTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILG----HETNDRKEKLAT----- 234
+E+E + Y + + ++ ++ ++ I G H ++ R + L++
Sbjct: 116 FVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRGKASTHISDIRYDHLSSVQPNQ 175
Query: 235 GTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXXX 294
+ R+++ RN Y+++ LP LI+ SW FW+ E+ S R+
Sbjct: 176 NEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTVV 233
Query: 295 XXXXXXRSSLPRISYVKAIDIYLVMCFVFVFAALL 329
+ LPR+ Y ID ++ + +FAA+L
Sbjct: 234 AYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 268
>pdb|2YKS|A Chain A, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|B Chain B, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|C Chain C, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|D Chain D, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|E Chain E, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|F Chain F, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|G Chain G, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|H Chain H, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|I Chain I, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
pdb|2YKS|J Chain J, Pentameric Ligand Gated Ion Channel Elic Mutant F246a
Length = 321
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 115/276 (41%), Gaps = 24/276 (8%)
Query: 69 PLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEK---- 124
P+ V + + I ++ + Y + Y+ W + + D+ L + E+
Sbjct: 11 PVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTG-KPRKTPGDKPLIVENTQIERWINN 69
Query: 125 -IWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQN 183
+WVP F N S NK + L DG + Y RF + + MD +P D Q
Sbjct: 70 GLWVPALEFINVVGS----PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQ 125
Query: 184 CTVEIESYGYT-----VLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLAT---- 234
+E+E + Y D+ +Y + ++E + + + H ++ R + L++
Sbjct: 126 FVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRKAST--HISDIRYDHLSSVQPN 183
Query: 235 -GTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXX 293
+ R+++ RN Y+++ LP LI+ SW FW+ E+ S R+
Sbjct: 184 QNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTV 241
Query: 294 XXXXXXXRSSLPRISYVKAIDIYLVMCFVFVFAALL 329
+ LPR+ Y ID ++ + +FAA+L
Sbjct: 242 VAYAAYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 277
>pdb|2VL0|A Chain A, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|B Chain B, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|C Chain C, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|D Chain D, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|E Chain E, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|F Chain F, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|G Chain G, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|H Chain H, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|I Chain I, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
pdb|2VL0|J Chain J, X-Ray Structure Of A Pentameric Ligand Gated Ion Channel
From Erwinia Chrysanthemi (Elic)
Length = 321
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 115/276 (41%), Gaps = 24/276 (8%)
Query: 69 PLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEK---- 124
P+ V + + I ++ + Y + Y+ W + + D+ L + E+
Sbjct: 11 PVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTG-KPRKTPGDKPLIVENTQIERWINN 69
Query: 125 -IWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQN 183
+WVP F N S NK + L DG + Y RF + + MD +P D Q
Sbjct: 70 GLWVPALEFINVVGS----PDTGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQ 125
Query: 184 CTVEIESYGYT-----VLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLAT---- 234
+E+E + Y D+ +Y + ++E + + + H ++ R + L++
Sbjct: 126 FVLELEPFSYNNQQLRFSDIQVYTENIDNEEIDEWWIRKAST--HISDIRYDHLSSVQPN 183
Query: 235 -GTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVAXXXXXXXXX 293
+ R+++ RN Y+++ LP LI+ SW FW+ E+ S R+
Sbjct: 184 QNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWL--ESFSERLQTSFTLMLTV 241
Query: 294 XXXXXXXRSSLPRISYVKAIDIYLVMCFVFVFAALL 329
+ LPR+ Y ID ++ + +FAA+L
Sbjct: 242 VAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAIL 277
>pdb|2BG9|C Chain C, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 369
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 108/229 (47%), Gaps = 6/229 (2%)
Query: 53 LLHGYDIRLRP-NFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAF-SS 110
+++ Y+ +RP + + + + LT+++ S+ E T ++++ W D RL + +S
Sbjct: 13 IVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNAS 72
Query: 111 EDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLAC 170
E +++ E IW+PD N+ + + N LVR NG +T+ +C
Sbjct: 73 EYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVRPNG--YVTWLPPAIFRSSC 130
Query: 171 MMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKE 230
+++ Y+P D QNC+++ + Y ++ M P E + + + N +
Sbjct: 131 PINVLYFPFDWQNCSLKFTALNYNANEISMDLIIDPEAFTENGEW-EIIHKPAKKNIYGD 189
Query: 231 KLATGT-YQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEA 278
K GT YQ ++ ++R ++V P +LI L+ ++F++ E+
Sbjct: 190 KFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAES 238
>pdb|1VRY|A Chain A, Second And Third Transmembrane Domains Of The Alpha-1
Subunit Of Human Glycine Receptor
Length = 76
Score = 62.8 bits (151), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 37/56 (66%)
Query: 281 ARVAXXXXXXXXXXXXXXXXRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336
ARV R+SLP++SYVKAIDI+L +C +FVF+ALLEYAAVN+
Sbjct: 3 ARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNF 58
>pdb|4AQ5|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|C Chain C, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 522
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 114/247 (46%), Gaps = 27/247 (10%)
Query: 53 LLHGYDIRLRP-NFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAF-SS 110
+++ Y+ +RP + + + + LT+++ S+ E T ++++ W D RL + +S
Sbjct: 34 IVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNAS 93
Query: 111 EDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLAC 170
E +++ E IW+PD N+ + + N LVR NG +T+ +C
Sbjct: 94 EYSDISILRLRPELIWIPDIVLQNNNDGQYNVAYFCNVLVRPNG--YVTWLPPAIFRSSC 151
Query: 171 MMDLHYYPLDNQNCTVEIESYGYTVLDVVMYW-------KETPVRGV---EEAQLPQFTI 220
+++ Y+P D QNC+++ + Y ++ M K+ P+ + EA FT
Sbjct: 152 PINVLYFPFDWQNCSLKFTALNYNANEISMDLMTDTIDGKDYPIEWIIIDPEA----FTE 207
Query: 221 LGH--------ETNDRKEKLATGT-YQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVS 271
G + N +K GT YQ ++ ++R ++V P +LI L+ ++
Sbjct: 208 NGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALA 267
Query: 272 FWINHEA 278
F++ E+
Sbjct: 268 FYLPAES 274
>pdb|2BG9|E Chain E, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 50 ISQLLHGYDIRLRPNFGGDPLY-VGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAF 108
I +LL YD R++P D + V + LT+ + S++E T +++ W D RL++
Sbjct: 7 IEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSW 66
Query: 109 -SSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTT 167
+SE E + L +E +W+PD N+ + N LV DGS+ +
Sbjct: 67 NTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVLVY--NDGSMYWLPPAIYR 124
Query: 168 LACMMDLHYYPLDNQNCTVEIESYGYTVLDV 198
C + + Y+P D QNC++ S Y +V
Sbjct: 125 STCPIAVTYFPFDWQNCSLVFRSQTYNAHEV 155
>pdb|4AQ5|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|E Chain E, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 488
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 50 ISQLLHGYDIRLRPNFGGDPLY-VGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAF 108
I +LL YD R++P D + V + LT+ + S++E T +++ W D RL++
Sbjct: 7 IEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSW 66
Query: 109 -SSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTT 167
+SE E + L +E +W+PD N+ + N LV DGS+ +
Sbjct: 67 NTSEYEGIDLVRIPSELLWLPDVVLENNVDGQFEVAYYANVLVY--NDGSMYWLPPAIYR 124
Query: 168 LACMMDLHYYPLDNQNCTVEIESYGYTVLDV 198
C + + Y+P D QNC++ S Y +V
Sbjct: 125 STCPIAVTYFPFDWQNCSLVFRSQTYNAHEV 155
>pdb|3IGQ|A Chain A, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|B Chain B, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|C Chain C, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|D Chain D, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|E Chain E, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
pdb|3IGQ|F Chain F, Crystal Structure Of The Extracellular Domain Of A
Bacterial Pentameric Ligand-Gated Ion Channel
Length = 201
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/124 (24%), Positives = 57/124 (45%), Gaps = 4/124 (3%)
Query: 63 PNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFA 122
P +PL V + + S+ + + + + +L+ WKD RLAF + +
Sbjct: 9 PPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEP 68
Query: 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQ 182
E IW+P+ F N +N+ DV + + ++ DG++ Y RF+ + +D D+Q
Sbjct: 69 EAIWIPEIRFVNVENARDADVVD----ISVSPDGTVQYLERFSARVLSPLDGRRTESDSQ 124
Query: 183 NCTV 186
+
Sbjct: 125 TLHI 128
>pdb|2BG9|A Chain A, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution.
pdb|2BG9|D Chain D, Refined Structure Of The Nicotinic Acetylcholine Receptor
At 4a Resolution
Length = 370
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 33/246 (13%)
Query: 47 TQTISQLLHGYDIRLRP-NFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDR 105
T+ ++ LL Y+ +RP + + + L + ++ EV+ + L Q W D R
Sbjct: 5 TRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVR 64
Query: 106 LAFSSED----EVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYG 161
L ++ D + + L D +W+PD N+ + + KL+ L+ G I +
Sbjct: 65 LRWNPADYGGIKKIRLPSD---DVWLPDLVLYNNADGDF-AIVHMTKLL-LDYTGKIMWT 119
Query: 162 MRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTIL 221
C + + ++P D QNCT+++ + Y T V E+ P +
Sbjct: 120 PPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY---------DGTKVSISPESDRPDLSTF 170
Query: 222 GHETNDRKEKLATG-------------TYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLS 268
E+ + K G Y ++ F +QR YFV +P +L L+
Sbjct: 171 -MESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLT 229
Query: 269 WVSFWI 274
+ F++
Sbjct: 230 VLVFYL 235
>pdb|4AQ5|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ5|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time- Resolved Electron Cryo-Microscopy (Closed Class)
pdb|4AQ9|A Chain A, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
pdb|4AQ9|D Chain D, Gating Movement In Acetylcholine Receptor Analysed By
Time-Resolved Electron Cryo-Microscopy (Open Class)
Length = 461
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/246 (21%), Positives = 99/246 (40%), Gaps = 33/246 (13%)
Query: 47 TQTISQLLHGYDIRLRP-NFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDR 105
T+ ++ LL Y+ +RP + + + L + ++ EV+ + L Q W D R
Sbjct: 29 TRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVR 88
Query: 106 LAFSSED----EVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYG 161
L ++ D + + L D +W+PD N+ + + KL+ L+ G I +
Sbjct: 89 LRWNPADYGGIKKIRLPSD---DVWLPDLVLYNNADGDF-AIVHMTKLL-LDYTGKIMWT 143
Query: 162 MRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTIL 221
C + + ++P D QNCT+++ + Y T V E+ P +
Sbjct: 144 PPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTY---------DGTKVSISPESDRPDLSTF 194
Query: 222 GHETNDRKEKLATG-------------TYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLS 268
E+ + K G Y ++ F +QR YFV +P +L L+
Sbjct: 195 -MESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLT 253
Query: 269 WVSFWI 274
+ F++
Sbjct: 254 VLVFYL 259
>pdb|2QC1|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Nicotinic Acetylcholine Receptor 1 Subunit Bound To
Alpha-Bungarotoxin At 1.9 A Resolution
Length = 212
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 66/149 (44%), Gaps = 4/149 (2%)
Query: 47 TQTISQLLHGYDIRLRP-NFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDR 105
T+ ++L Y +RP + + V + L + ++ EV+ T + L Q W D
Sbjct: 6 TRLEAKLFEDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYN 65
Query: 106 LAFSSEDEVLTLSGDF-AEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRF 164
L ++ +D +EKIW PD N+ + V + V L+ G IT+
Sbjct: 66 LKWNPDDYGGVKKIHIPSEKIWRPDVVLYNNADGDFAIV--KFTKVLLDYTGHITWTPPA 123
Query: 165 TTTLACMMDLHYYPLDNQNCTVEIESYGY 193
C + + ++P D QNC++++ + Y
Sbjct: 124 IFKSYCEIIVTHFPFDEQNCSMKLGTRTY 152
>pdb|4AOE|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
pdb|4AOE|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 2
(Bgachbp2)
Length = 205
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 54/111 (48%), Gaps = 10/111 (9%)
Query: 93 ITMYLNQYWKDDRLAFSSEDEV---LTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKL 149
+ ++L WKD L++S+E LTL + IW+P N S ++L
Sbjct: 52 LGLWLVISWKDRSLSWSNECTTFNELTLPSKY---IWLPHIEVYN---SIGKPGIHSDQL 105
Query: 150 VRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVM 200
VR+ DG++T+ ++T +C ++ + CT++ + Y V D+V+
Sbjct: 106 VRVYKDGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDLVL 155
>pdb|4AOD|A Chain A, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|B Chain B, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|C Chain C, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|D Chain D, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
pdb|4AOD|E Chain E, Biomphalaria Glabrata Acetylcholine-Binding Protein Type 1
(Bgachbp1)
Length = 205
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 71/160 (44%), Gaps = 11/160 (6%)
Query: 93 ITMYLNQYWKDDRLAFSSE-DEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVR 151
I ++ WKD L + +E L+ AE IW PD F + S +KL R
Sbjct: 52 IGLWTTLVWKDRCLNWFNEFTSFKELTVPIAE-IWTPDIFIFD---SVGAPEIFSDKLAR 107
Query: 152 LNGDGSITYGMRFTTTLAC-MMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGV 210
++ DG++TY + L+C + DL C+++ S+ ++ ++ + G
Sbjct: 108 VSQDGTVTYVPQLKVRLSCPLADLKLE--TGVTCSLKSGSWTHSTQELTLEVNAKVDLG- 164
Query: 211 EEAQLPQFTILG--HETNDRKEKLATGTYQRLSLSFKLQR 248
+ A +F +L + N ++ TY+ +LSF ++
Sbjct: 165 DYASDTRFQLLNATQQVNRKQYPCCPETYEDTTLSFTFRK 204
>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii,
25.M01780 Or Tgme49_007820
Length = 458
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 308 SYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADR 342
+Y +AID++ + C +FA LL N +Y ADR
Sbjct: 260 NYTEAIDVWSIGC---IFAELLNMIKENVAYHADR 291
>pdb|3H97|A Chain A, Structure Of A Mutant Methionyl-trna Synthetase With
Modified Specificity
pdb|3H99|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Methionine
pdb|3H9B|A Chain A, Structure Of A Mutant Methionyl-Trna Synthetase With
Modified Specificity Complexed With Azidonorleucine
Length = 560
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 27 SEKLRLCHKKSATTERLANVTQT-ISQLLHGYDI-RLRPNFG-------GDPLYVGMDLT 77
SE L+ + A E++AN Q L +DI R P FG G YV +D
Sbjct: 211 SEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAP 270
Query: 78 IASFDSISEVSMDYTITMYLNQYWKDDRLA 107
I S + ++ ++YWK D A
Sbjct: 271 IGLMGSFKNLCDKRGDSVSFDEYWKKDSTA 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,804,789
Number of Sequences: 62578
Number of extensions: 373301
Number of successful extensions: 833
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 45
length of query: 365
length of database: 14,973,337
effective HSP length: 100
effective length of query: 265
effective length of database: 8,715,537
effective search space: 2309617305
effective search space used: 2309617305
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)