Query psy5812
Match_columns 365
No_of_seqs 189 out of 1394
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 18:37:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5812.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5812hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3643|consensus 100.0 6E-66 1.3E-70 469.5 21.3 303 39-341 28-333 (459)
2 TIGR00860 LIC Cation transport 100.0 3.3E-63 7.2E-68 481.1 28.6 301 43-343 28-333 (459)
3 KOG3646|consensus 100.0 2E-59 4.3E-64 428.5 15.4 306 43-351 24-337 (486)
4 KOG3644|consensus 100.0 1.8E-57 3.9E-62 432.0 24.4 301 40-340 34-341 (457)
5 KOG3642|consensus 100.0 2.9E-57 6.2E-62 415.4 18.6 303 39-341 37-341 (466)
6 KOG3645|consensus 100.0 6.3E-56 1.4E-60 428.7 27.0 300 44-345 28-335 (449)
7 PF02931 Neur_chan_LBD: Neurot 100.0 1.3E-39 2.9E-44 288.1 22.7 204 46-250 1-217 (217)
8 PF02932 Neur_chan_memb: Neuro 99.5 1.1E-16 2.3E-21 140.6 -5.6 99 257-355 1-101 (237)
9 PF14494 DUF4436: Domain of un 96.3 0.063 1.4E-06 48.1 11.2 149 171-332 96-250 (256)
10 PF10856 DUF2678: Protein of u 47.6 25 0.00054 27.3 3.2 11 314-324 61-71 (118)
11 PF11395 DUF2873: Protein of u 39.4 44 0.00095 20.1 2.7 26 309-334 3-28 (43)
12 PRK04257 hypothetical protein; 32.5 87 0.0019 22.6 4.0 17 147-163 58-76 (78)
13 PF06554 Olfactory_mark: Olfac 27.6 23 0.00049 28.0 0.3 19 111-131 63-81 (151)
14 PF09125 COX2-transmemb: Cytoc 23.8 97 0.0021 18.7 2.4 19 316-334 18-36 (38)
15 PF15102 TMEM154: TMEM154 prot 20.6 94 0.002 25.3 2.6 12 332-343 76-87 (146)
No 1
>KOG3643|consensus
Probab=100.00 E-value=6e-66 Score=469.47 Aligned_cols=303 Identities=57% Similarity=1.011 Sum_probs=291.3
Q ss_pred cccccchHHHHHHHHhhCCCCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEeccccccc-CCCCeEEe
Q psy5812 39 TTERLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFS-SEDEVLTL 117 (365)
Q Consensus 39 ~~~~~~~~~~L~~~Ll~~Yd~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn-~~~~~i~~ 117 (365)
+..+..+.++.+++|+++||..+||..+|+|+.|.+.++|.+|..|+|.++.+++++|+++.|+||||+|+ ++.+++++
T Consensus 28 ~~~~~~~~~~~ld~l~~~yd~~lRP~fGG~pv~Vgi~i~VaSI~~vSEV~MDyTlt~y~rq~W~D~RLay~~~~~~slTl 107 (459)
T KOG3643|consen 28 SHGNTQLVSSVLDRLLNGYDYRLRPNFGGPPVDVGITIHVASIDAVSEVNMDYTLTMYLRQTWRDPRLAYSSKNIDSLTL 107 (459)
T ss_pred cccchhhHHHHHHHHhhcCceecCCCCCCCCeEEEEEEEEeeechhccccchhhhhhhhhhhhcCcccccCCCCCceEEE
Confidence 34455789999999999999999999999999999999999999999999999999999999999999999 58889999
Q ss_pred cccccCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeecccccee
Q psy5812 118 SGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLD 197 (365)
Q Consensus 118 ~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~ 197 (365)
..-..++||.||.+|.|++++.+|..+.++..+|+++||+|.++.|++.++.|+||+++||+|+|+|.+.++||+|+.++
T Consensus 108 ~~~~~~~LWvPDTff~N~KkSf~H~~T~~N~~lRl~~dGtVlys~RlT~Ta~C~MDL~~fPmD~Q~C~LeiESYGYt~~D 187 (459)
T KOG3643|consen 108 DVRYVDKLWVPDTFFPNSKKSFFHDVTTHNSLLRLHPDGTVLYSIRLTVTAACPMDLKLFPMDSQNCKLEIESYGYTTDD 187 (459)
T ss_pred chhhhhccccCceecccCcccccceeeecceEEEEcCCCeEEEEEEEEEEEecccccccCCCcccceeEEEEeccccccc
Confidence 98889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeecC--CcccccccccCCceeeceeeeeeeeecCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeee
Q psy5812 198 VVMYWKET--PVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWIN 275 (365)
Q Consensus 198 v~l~~~~~--~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~ 275 (365)
+.+.|..+ .+...++.+++++.+.+.........+.+|.|+++.++|.++|+.+||++++++|+.+++++||++||+.
T Consensus 188 I~y~W~~g~~av~~~e~i~LpqFti~~~~~~s~~~~~sTG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin 267 (459)
T KOG3643|consen 188 IEYYWSKGDNAVKGDEKIELPQFTITEYHVTSRLVSFSTGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWIN 267 (459)
T ss_pred EEEEEcCCCccccceeeeeccceEEEEEEEEEEEEEEccccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhc
Confidence 99999965 5677788999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEehhHHHHHHHhhhhhhccCCCCCcccchhhhhhHHHHHHHHHHHHhhheeeeeecc
Q psy5812 276 HEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWAD 341 (365)
Q Consensus 276 ~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~~~~i~~~~~~~~~~~~~~li~~~iv~~~~~~~ 341 (365)
.++.++|+.+|+|++|+|+.+...+++.||+++|+.+||+|+.+|++++|+|++|++++++...++
T Consensus 268 ~~a~pARv~lGITTVLTMTTl~t~~n~slPrvSYVKAiDiYL~vCFvfVF~sLLEYA~V~Y~~~~~ 333 (459)
T KOG3643|consen 268 RDASPARVALGITTVLTMTTLMTSTNESLPRVSYVKAIDVYLGVCFVFVFLSLLEYAAVNYMFKRR 333 (459)
T ss_pred cccchhheeeceehHHhHHHHHhhhhccCCCccceeeehhhhhHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999999999999999999999999999999999987655
No 2
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=100.00 E-value=3.3e-63 Score=481.12 Aligned_cols=301 Identities=47% Similarity=0.807 Sum_probs=271.3
Q ss_pred cchHHHHHHHHhhCCCCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecccc
Q psy5812 43 LANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDF 121 (365)
Q Consensus 43 ~~~~~~L~~~Ll~~Yd~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~ 121 (365)
.+.+++|+++||++||+.+||..+++|+.|.+++.+.+|.++||++|++++++|++++|+|+||+||| ++++++...++
T Consensus 28 ~~~~~~L~~~Ll~~Yd~~~RPv~~~~~v~V~~~i~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~Wnp~~y~~i~~i~~~ 107 (459)
T TIGR00860 28 KEVERKLLDELLKNYDARVRPVFGGPPVTVSFNLFLRSIMDVDEKNMDYTTNIWLRQEWTDERLQWNPEEYPGVTLVRTP 107 (459)
T ss_pred ChHHHHHHHHHHhcCCCCcCCCCCCCCEEEEEEEEEEEecccccccceEEEeeeeeeEEeCCccCCCCccCCCceecccc
Confidence 36678999999999999999997788999999999999999999999999999999999999999999 78999888888
Q ss_pred cCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEE
Q psy5812 122 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMY 201 (365)
Q Consensus 122 ~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~ 201 (365)
.++||+||++++|++++..+.....+..++.++||+|.|.++...++.|++|+++||||+|+|+++|+||.|+.+++++.
T Consensus 108 ~~~IW~PDi~l~N~~~~~~~~~~~~~~~v~~~~~G~V~~~~~~~~~~~C~~d~~~FPfD~Q~C~l~fgSw~y~~~~i~l~ 187 (459)
T TIGR00860 108 DDSIWVPDIFFYNEKDARFHGITMTNVLVRIHPNGSVLYSPRITLTLACPMDLRNFPFDVQNCSLKFESWGYTTNDIKLE 187 (459)
T ss_pred ccccccCcEEeecCccccccccccCceEEEEcCCCcEEEecCceEEecccceeccCCCCCccccEEEhhhccccceEEEE
Confidence 99999999999999987766655566677778899999999999999999999999999999999999999999999999
Q ss_pred eecC-Cccc--ccccccCCceeeceeeee-eeeecCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeCC
Q psy5812 202 WKET-PVRG--VEEAQLPQFTILGHETND-RKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHE 277 (365)
Q Consensus 202 ~~~~-~~~~--~~~~~~~~w~l~~~~~~~-~~~~~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~ 277 (365)
+..+ +... ......+||++.+..... ....+++++|+++.++++++|++.||++++++|+++++++++++||+|++
T Consensus 188 ~~~~~~v~~~~~~~~~~~eW~l~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~ 267 (459)
T TIGR00860 188 WKEQGAVQVDDSLFISLPEFELLGVYGTRYCTSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPAD 267 (459)
T ss_pred ECCCCceEechhhccccCceEEEeeeeeeeEecccCCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCC
Confidence 8654 2222 233478999999854433 33445678999999999999999999999999999999999999999999
Q ss_pred CCCccEEEehhHHHHHHHhhhhhhccCCCCCcccchhhhhhHHHHHHHHHHHHhhheeeeeecccc
Q psy5812 278 ATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADRA 343 (365)
Q Consensus 278 ~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~~~~i~~~~~~~~~~~~~~li~~~iv~~~~~~~~~ 343 (365)
+.++|+++++++||++++++..+++.+|+++++|+||+|+.+|++++++++++++++.+++++.+.
T Consensus 268 a~~eRi~L~it~lLs~~vf~~~v~~~lP~~S~vpli~~y~~~~~~~v~~sli~tv~V~~~~~~~~~ 333 (459)
T TIGR00860 268 ASGARVSLGITTLLTMTTFSSGVRESLPAVSYVKAIDVYFAVCMAFVFLALLETAFVNYVHHKDPA 333 (459)
T ss_pred CCCCcEEEEEEHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHHHHHHHHHHHHHHhheeEEccCCC
Confidence 556999999999999999999999999999999999999999999999999999998887766544
No 3
>KOG3646|consensus
Probab=100.00 E-value=2e-59 Score=428.50 Aligned_cols=306 Identities=18% Similarity=0.326 Sum_probs=281.8
Q ss_pred cchHHHHHHHHhhCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEeccc
Q psy5812 43 LANVTQTISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGD 120 (365)
Q Consensus 43 ~~~~~~L~~~Ll~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~ 120 (365)
...|.||+++|+++||+..||+.+ ++|++|.+++.+++|.++||++|.++++.|+.++|+|-+|+||| ++++|+-.+.
T Consensus 24 s~~E~rL~~dL~~nYn~leRPV~N~Sepl~V~~~~~lqQIidVDEKnQvl~~naWl~y~W~D~~LrW~pseygnI~dvR~ 103 (486)
T KOG3646|consen 24 SVAEYRLLTDLLENYNPLERPVANESEPLQVKLGVFLQQIIDVDEKNQVLSVNAWLQYQWNDYKLRWDPSEYGNITDIRF 103 (486)
T ss_pred CHHHHHHHHHHHhhcCccCCCccccCcCEEEEeeeeEeccCCCcccccchhhhhhhheeehhhhhccCHHHhCCceeecc
Confidence 478999999999999999999985 88999999999999999999999999999999999999999999 9999999999
Q ss_pred ccCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEE
Q psy5812 121 FAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVM 200 (365)
Q Consensus 121 ~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l 200 (365)
|.++||.||+.++|+++..++..-. ..+.|++||.|.|.++...+++|.+|.+.||||.|.|.++||||+|+...+++
T Consensus 104 p~~~iWkPDVLLYNSade~FDsTy~--tN~Vv~~tG~v~~vPPGIfk~sCkiDItwFPFD~Q~C~mKFGSWTY~G~~lDL 181 (486)
T KOG3646|consen 104 PGGNIWKPDVLLYNSADEQFDSTYK--TNYVVYSTGSVLWVPPGIFKSSCKIDITWFPFDDQVCYLKFGSWTYAGILLDL 181 (486)
T ss_pred CCccccCCceeccccccccCCCcce--eeEEEccCCeeeecCCceeeeeeEEEEEEecccccEEEEEeeeEEEcceeeee
Confidence 9999999999999999988766544 44669999999999999999999999999999999999999999999998888
Q ss_pred EeecC--CcccccccccCCceeeceeeeeeeeec--CCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeC
Q psy5812 201 YWKET--PVRGVEEAQLPQFTILGHETNDRKEKL--ATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINH 276 (365)
Q Consensus 201 ~~~~~--~~~~~~~~~~~~w~l~~~~~~~~~~~~--~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~ 276 (365)
+.+.. ....+.+..++||++.+....+....+ |.++|+.+.|.++++|+..||.+++++|+++++++++++|-+|+
T Consensus 182 ~~~~~~g~~Dls~yi~NGEW~Ll~~pakr~~~~y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlpp 261 (486)
T KOG3646|consen 182 RIDDEDGGIDLSTYIPNGEWDLLGTPAKREEKTYDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPP 261 (486)
T ss_pred eeccccCCcchhhcccCCceeeccccccceeeecccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCc
Confidence 76654 356778899999999999887766655 47899999999999999999999999999999999999999999
Q ss_pred CCCCccEEEehhHHHHHHHhhhhhhccCCCCCc-ccchhhhhhHHHHHHHHHHHHhh-heeeeeeccccccCCCCCC
Q psy5812 277 EATSARVALGITTVLTMTTISTGVRSSLPRISY-VKAIDIYLVMCFVFVFAALLEYA-AVNYSYWADRAKKKPKAKE 351 (365)
Q Consensus 277 ~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~-~~~i~~~~~~~~~~~~~~li~~~-iv~~~~~~~~~~~~~~~~~ 351 (365)
|++ +++++++|++|+..+|+.++++..|++|. +|+++.|+..||+++.+|++.++ ++|+++|.+..++...|.+
T Consensus 262 D~g-EKitL~iTilLsvc~FL~mvse~~PpTSeaVPllg~fFsc~m~iv~~SvvfTv~vLn~h~R~p~~h~m~p~~r 337 (486)
T KOG3646|consen 262 DAG-EKITLQITILLSVCFFLTMVSEMTPPTSEAVPLLGAFFSCCMFIVAASVVFTVIVLNLHHRTPETHEMSPWTR 337 (486)
T ss_pred ccc-ceeeeeeehHHHHHHHHHHHHhhcCCccccccHHHHHHHHHHHHHHhhheeEEEEEeeeccCccccccCHHHH
Confidence 997 99999999999999999999999999987 99999999999999999997766 5688888888888666543
No 4
>KOG3644|consensus
Probab=100.00 E-value=1.8e-57 Score=432.01 Aligned_cols=301 Identities=41% Similarity=0.790 Sum_probs=279.3
Q ss_pred ccccchHHHHHHHHhhC-CCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEeccccccc-CCCCeE-
Q psy5812 40 TERLANVTQTISQLLHG-YDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFS-SEDEVL- 115 (365)
Q Consensus 40 ~~~~~~~~~L~~~Ll~~-Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn-~~~~~i- 115 (365)
++...++++++++||.+ ||+..+|..+ +.|+.|.+++++++|.+++|.++++++++++++.|.||||+.+ ..++.+
T Consensus 34 ~~~~~~~~~il~~LL~~~Yd~~~~P~~~~~~pv~V~v~i~vq~i~~ise~~mdf~~di~~~~~W~DpRL~~~~~~~~~~~ 113 (457)
T KOG3644|consen 34 EDLCTSDTDILDRLLGRNYDKRRPPNGKGGGPVSVSVEITVQSISSISEITMDFEVDIYFRERWQDPRLAYNALKFDHIL 113 (457)
T ss_pred cccccChHHHHHHHhhccCccccCCCccCCCceEEEEEEEEEeecceecccceEEeeeeeeeeEeCccccccccCccccc
Confidence 34457899999999988 9999999885 7899999999999999999999999999999999999999988 432222
Q ss_pred --EecccccCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccc
Q psy5812 116 --TLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGY 193 (365)
Q Consensus 116 --~~~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~ 193 (365)
...-...++||.||++|.|++...+|..+.++..+.|++||+|.+..|++++.+|+||+.+||+|+|+|.+.++||.|
T Consensus 114 ~~~~~l~~~~~iW~Pd~~F~NsK~a~~H~~~~~N~ll~I~pnGtV~~~~Ri~l~~~C~m~L~~fP~D~Q~C~l~~eSy~Y 193 (457)
T KOG3644|consen 114 PCKLNLSLKQKIWTPDTFFANSKSAEFHKSTKPNVLLMIFPNGTVWYSYRISLTLPCNMDLSKFPMDSQECKLQLESYAY 193 (457)
T ss_pred ccccccccCCceecCceeeecccceeeecCCCCceEEEEecCCeEEEEEEEEEeeceeeehhhCCCccceeeEEEEEecc
Confidence 111111267999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEeecC-CcccccccccCCceeeceeeeeeeeecCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEE
Q psy5812 194 TVLDVVMYWKET-PVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSF 272 (365)
Q Consensus 194 ~~~~v~l~~~~~-~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f 272 (365)
+.+++++.|.+. ++...++..++++.+.+.+...+...+..|.|+++++.++++|+.+||++..++|+.+++++||++|
T Consensus 194 n~~~v~~~W~~~~pv~~~~~i~LPdf~l~~~~~~~~~~~y~~G~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSF 273 (457)
T KOG3644|consen 194 NTDDVRLEWKEWNPVQVKKDIKLPDFSLPSFSTEKCTGSYTTGVYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSF 273 (457)
T ss_pred ccceEEEEecCCCCcccccCccCCceeccceeeccccccccCcceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhhe
Confidence 999999999986 6777788999999999998888777888999999999999999999999999999999999999999
Q ss_pred eeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCCcccchhhhhhHHHHHHHHHHHHhhheeeeeec
Q psy5812 273 WINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWA 340 (365)
Q Consensus 273 ~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~~~~i~~~~~~~~~~~~~~li~~~iv~~~~~~ 340 (365)
||++++.++|+.||+|+||++++....+...||++||+.+||+|+++|++++|.+++|.++|+++.++
T Consensus 274 WLd~~A~PARv~LgvtsLLtLttq~~~i~~~LP~VSYvKAIDVWm~~C~~FIF~sLlE~A~V~~~~~~ 341 (457)
T KOG3644|consen 274 WLDPKAVPARVTLGVTSLLTLTTQSGGIRRNLPKVSYVKAIDVWMGVCMTFIFGSLLELAVVNYVGRR 341 (457)
T ss_pred ecCCCcccceEEehHHHHHHHHHHhcchhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999875
No 5
>KOG3642|consensus
Probab=100.00 E-value=2.9e-57 Score=415.35 Aligned_cols=303 Identities=45% Similarity=0.830 Sum_probs=288.8
Q ss_pred cccccchHHHHHHHHhhCCCCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccCCCCeEEec
Q psy5812 39 TTERLANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLS 118 (365)
Q Consensus 39 ~~~~~~~~~~L~~~Ll~~Yd~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~~~~~i~~~ 118 (365)
++....+.+++++.||.+||+.+||..++.|+.|.++++|+++..+++.+++++++.+++++|.|+||.+|...+.+.+.
T Consensus 37 ~k~~~~~~T~iLn~lL~~YD~~lRP~~g~~pt~v~~di~V~S~GPVSd~~meytid~~FrQ~W~D~RL~f~~~~~~L~Ln 116 (466)
T KOG3642|consen 37 PKSQDTDVTLILNNLLRGYDNKLRPDIGSKPTEVETDIYVRSMGPVSDSDMEYTIDCFFRQTWVDDRLKFNGPQEALPLN 116 (466)
T ss_pred CccccchHHHHHHHHHHhhhcccCCCCCCCCcEEEEEEEEeecccccccCceEEEEEEEEEeehhhhhcccCcchhhccc
Confidence 34556999999999999999999999999999999999999999999999999999999999999999999866778888
Q ss_pred ccccCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeE
Q psy5812 119 GDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDV 198 (365)
Q Consensus 119 ~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v 198 (365)
.....+||+||.+|.|++++..|..+.++..++|..||+|.|..|.+..+.|+|++.+||+|.|.|+++|+|++|+.+|+
T Consensus 117 ~~m~~kiW~PDTfF~NgkkS~~H~iT~pN~l~Ri~~dG~vlyt~RlTi~A~C~m~l~~fPMD~haCpl~fgSy~Y~~~ev 196 (466)
T KOG3642|consen 117 SLMLSKIWIPDTFFRNGKKSYAHNITTPNKLVRIYIDGTVLYTMRLTIPAECPMHLARFPMDSHACPLKFGSYAYPGSEV 196 (466)
T ss_pred hhhhcCcccCCcccccCcccceeeccCCCceEEEeECCcceEEEEEeecccCcchhhcCCCCcccCcceecccCcCCCCE
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecCCc--ccccccccCCceeeceeeeeeeeecCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeC
Q psy5812 199 VMYWKETPV--RGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINH 276 (365)
Q Consensus 199 ~l~~~~~~~--~~~~~~~~~~w~l~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~ 276 (365)
.+.|....+ ...+.+.+.|+++.+.....+.....+|+|+.+++.|+++|+.+||++++++||++.++|+|++||+..
T Consensus 197 vY~W~~~~VeV~~~~~~~L~Qf~l~g~~~~te~i~t~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinr 276 (466)
T KOG3642|consen 197 VYKWKKRSVEVNETDSWSLDQFDLLGVSVGTEDIKTSSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINR 276 (466)
T ss_pred EEEEecccEEEcCCCCccccceeeecccccccceEecCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccc
Confidence 999998843 444556799999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEehhHHHHHHHhhhhhhccCCCCCcccchhhhhhHHHHHHHHHHHHhhheeeeeecc
Q psy5812 277 EATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWAD 341 (365)
Q Consensus 277 ~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~~~~i~~~~~~~~~~~~~~li~~~iv~~~~~~~ 341 (365)
++.++|.++|+|++|+|+++.......+|+++|.|++|.|+.+|+++++.+++|++.+||+....
T Consensus 277 Es~paRt~lGITtVLTMTtLs~~aR~slPKVsy~TAmD~fIavCf~FvFsaliEfa~vNYft~~~ 341 (466)
T KOG3642|consen 277 EATPARTSLGITTVLTMTTLSTSARKSLPKVSYATALDVFIAVCFIFVFAALVEFAVVNYFTLNQ 341 (466)
T ss_pred cccccceeeeeeeeeeeeeeeehhccCCCccccchhHHHHHHHHHHHHHHHHHHHHheeeeeecc
Confidence 99999999999999999999999999999999999999999999999999999999999998444
No 6
>KOG3645|consensus
Probab=100.00 E-value=6.3e-56 Score=428.71 Aligned_cols=300 Identities=22% Similarity=0.386 Sum_probs=270.8
Q ss_pred chHHHHHHHHhhCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecccc
Q psy5812 44 ANVTQTISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDF 121 (365)
Q Consensus 44 ~~~~~L~~~Ll~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~ 121 (365)
+++.+|..+|+.+|++.+||..+ .++++|.+++.+.+|.+|||++|.+++++|+.++|+|+||+||| ++++++...+|
T Consensus 28 ~~~~~l~~~l~~~Y~~~vrPv~~~~~~v~V~~~~~l~qii~VdE~~q~~t~~~wl~~~W~D~~L~Wnp~~~~~I~~i~vp 107 (449)
T KOG3645|consen 28 AAEERLLVDLFDKYNKLVRPVKNSSDPVTVNFGLVLYQIIEVDEKNQIMTTNVWLKQSWTDERLSWDPSDYGGITKIRVP 107 (449)
T ss_pred HHHHHHHHHHhhcccccCCccCCCCCcEEEEEEEEEEEEEeeccccceEEEEEEeeeEEeccCcccChHHcCCceEEEec
Confidence 57899999999999999999985 56899999999999999999999999999999999999999999 99999999999
Q ss_pred cCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEE-E
Q psy5812 122 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVV-M 200 (365)
Q Consensus 122 ~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~-l 200 (365)
.++||+||++++|+..++...... ..+.++++|+|.|.+++..++.|++|+++||||.|+|+++|+||.|+.+++. +
T Consensus 108 ~~~IW~Pdi~l~N~~~~~~~~~~~--~~v~v~~~G~V~~~~p~i~~s~C~idv~~FPfD~Q~C~i~f~sw~~~~~~i~~~ 185 (449)
T KOG3645|consen 108 SSKIWLPDIVLYNNADGDFEVEDL--TNVLVTYTGEVLWYPPAIYKSSCPIDVTYFPFDVQNCSIKFGSWTYDGSEVDGL 185 (449)
T ss_pred HHHcCcCcEEEEeccccccccccc--ceEEEEECCEEEEEcceEEEeecccccccCCCcceeEeEEEeccccCcccccee
Confidence 999999999999977766544333 3378999999999999999999999999999999999999999999999886 5
Q ss_pred EeecCC--cccccccccCCceeeceeeeeeeeec--CCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeC
Q psy5812 201 YWKETP--VRGVEEAQLPQFTILGHETNDRKEKL--ATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINH 276 (365)
Q Consensus 201 ~~~~~~--~~~~~~~~~~~w~l~~~~~~~~~~~~--~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~ 276 (365)
...... ....+...++||++.+.........+ +++.|+.+.|++++||+|.||.+++++|+++++++++++||+|+
T Consensus 186 ~~~~~~~~~~~~~~~~n~eW~l~~~~~~~~~~~~~~~~~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~ 265 (449)
T KOG3645|consen 186 DLNAQTIEVDLSDFIENSEWELLSVTVVREEKKYDCCPGPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPS 265 (449)
T ss_pred eeccccccCCHHHcCCCCcEEEEeeeeEEeecccCCCCCceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccC
Confidence 554444 56667788999999999988766665 45679999999999999999999999999999999999999998
Q ss_pred CCCCccEEEehhHHHHHHHhhhhhhccCCCCCc-ccchhhhhhHHHHHHHHHHHHhhheeeeeecccccc
Q psy5812 277 EATSARVALGITTVLTMTTISTGVRSSLPRISY-VKAIDIYLVMCFVFVFAALLEYAAVNYSYWADRAKK 345 (365)
Q Consensus 277 ~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~-~~~i~~~~~~~~~~~~~~li~~~iv~~~~~~~~~~~ 345 (365)
+.+.+|+++++++||++++++.++++.+|+++. +|++++|+.++|++++++++.++++..++.+....+
T Consensus 266 ~~~~eki~L~it~Ll~~tv~ll~vs~~~P~ts~~iPLig~y~~~~m~~~~~sv~~tv~i~~~~~~~~~~~ 335 (449)
T KOG3645|consen 266 DSGTEKVTLGITVLLAMTVFLLLVSDKMPPTSSVIPLIGKYLLFTMVLVTISVVVTVVILNLHHRSPTTH 335 (449)
T ss_pred CCCCceEEEEHHHHHHHHHHHHHHHhhcCCccCcchHHHHHHHHHHHHHHHHHHHheeEEeeecccCCCC
Confidence 877799999999999999999999999999988 899999999999999999999887777665554444
No 7
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=100.00 E-value=1.3e-39 Score=288.07 Aligned_cols=204 Identities=29% Similarity=0.557 Sum_probs=168.4
Q ss_pred HHHHHHHHhhCCCCCCCCCC-CCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecccccC
Q psy5812 46 VTQTISQLLHGYDIRLRPNF-GGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDFAE 123 (365)
Q Consensus 46 ~~~L~~~Ll~~Yd~~~rP~~-~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~~~ 123 (365)
+++|+++||++||+.+||.. +++|+.|.+++.+.+|.++||.++++++++++.++|+|+||+||| +++++....++.+
T Consensus 1 ~~~l~~~L~~~Yd~~~rP~~~~~~~~~V~v~~~~~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~~~v~~~ 80 (217)
T PF02931_consen 1 ETRLLKSLFDNYDKRVRPVKNEGDPTNVSVSIYLNSIVEVDESEQTFTVDGFIRLSWKDPRLKWNPSDYGGIESIRVPSS 80 (217)
T ss_dssp HHHHHHHHHHTS-STS-SSSSSSS-EEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEECCGE-STTTTTTESEEEEEGG
T ss_pred ChHHHHHHHhcCCCCCCCCCCCCCeEEEEEEEEHhheeccccccchhhhhhhhceeccccccccChhhccCccccccccc
Confidence 57999999999999999984 688999999999999999999999999999999999999999999 7777777777789
Q ss_pred cccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEEee
Q psy5812 124 KIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWK 203 (365)
Q Consensus 124 ~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~ 203 (365)
+||+|++++.|..+... ........+.|++||+|.+..++++++.|++|+++||||+|+|.|.|+||.|+.+++.+.+.
T Consensus 81 ~iW~P~l~~~n~~~~~~-~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~ 159 (217)
T PF02931_consen 81 QIWTPDLYFYNSVSGSF-EITEPNSNVRVYSDGTVRYSPRFTLTFSCPMDLRDFPFDSQNCSIKFGSWSYNSEEVQLKWE 159 (217)
T ss_dssp GS----EEETTBSSSEE-ECS-SSEEEEEETTSEEEEEEEEEEEEEECETTTSSSSSEEEEEEEEEESSSSTTTEEEEES
T ss_pred ceEecccccccccccce-ecccccccccccccchheeeecccccccccccccccccccceeEEEEecccccccceeeeec
Confidence 99999999999554432 22224567899999999999999999999999999999999999999999999999999998
Q ss_pred cC--------CcccccccccCCceeeceeeeeeeeec--CCCc-eeeeEEEEEEEeec
Q psy5812 204 ET--------PVRGVEEAQLPQFTILGHETNDRKEKL--ATGT-YQRLSLSFKLQRNI 250 (365)
Q Consensus 204 ~~--------~~~~~~~~~~~~w~l~~~~~~~~~~~~--~~~~-ys~l~~~~~l~R~~ 250 (365)
.. ..........++|++.+.........+ ..+. |+.+.+.|+|+|+|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~ew~~~~~~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~ 217 (217)
T PF02931_consen 160 NKNPPIDENDEVSLSDFVSNSEWKIVSVTSTRRETTYGCYNEPTYSMLSFTFTLKRRP 217 (217)
T ss_dssp CSSS-TTSSTTTSCTTCETTSSEEEEEEEEEEEEEEESTSSSCSEEEEEEEEEEEEST
T ss_pred ccCceeeeeccccHHHccccceEEEEeeEEEEEEEccCCcCCCCEeeEEEEEEEEECc
Confidence 73 334445677889999997766555432 3444 99999999999986
No 8
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.54 E-value=1.1e-16 Score=140.63 Aligned_cols=99 Identities=42% Similarity=0.689 Sum_probs=75.1
Q ss_pred eehhhHHHhhheeeEEeeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCCcccchhhhhhHHHHHHHHHHHHhhheee
Q psy5812 257 TYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNY 336 (365)
Q Consensus 257 ~~lP~~li~~l~~~~f~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~~~~i~~~~~~~~~~~~~~li~~~iv~~ 336 (365)
+++||+++++++|++||+|++++++|+++|+|+||++++++..+++.+|+++|..++|.|+..|+++++.+++++.++++
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL~~~~~~~~~~~~lP~~s~~~pl~~~~~~~~~~v~~~~~~~avv~~ 80 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLLAMTVFLLMVAENLPPTSYAKPLDGWYFICTMFVFSASLEFAVVVY 80 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHHHHHHHHhhhhhhhcccccccchhhhhccccchhhhHHHHhhhhhh
Confidence 47999999999999999999998899999999999999999999999999999777777888777777777766655544
Q ss_pred --eeeccccccCCCCCCCCCC
Q psy5812 337 --SYWADRAKKKPKAKEPTPL 355 (365)
Q Consensus 337 --~~~~~~~~~~~~~~~~~~~ 355 (365)
+++.++.++.++|.+....
T Consensus 81 ~~~~~~~~~~~~~~~~r~~~l 101 (237)
T PF02932_consen 81 NIHHRGPRTRPMPPWVRRLFL 101 (237)
T ss_dssp HHHHHSTTT-S----------
T ss_pred hhcccccccccccchhHHHHh
Confidence 3455556777777775443
No 9
>PF14494 DUF4436: Domain of unknown function (DUF4436)
Probab=96.27 E-value=0.063 Score=48.13 Aligned_cols=149 Identities=15% Similarity=0.229 Sum_probs=77.7
Q ss_pred eeeeccCCCcceeEE-EEEeeccccceeEEEEeecCCcccccccccCCceeeceeeeeeeeecCCCceeeeEEEEEEEee
Q psy5812 171 MMDLHYYPLDNQNCT-VEIESYGYTVLDVVMYWKETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRN 249 (365)
Q Consensus 171 ~~d~~~fPfD~q~C~-i~~~s~~~~~~~v~l~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~ys~l~~~~~l~R~ 249 (365)
.=+..+||||+.+-. +.+..+.-+..+-... +....-.....+|++......... ....+.++++|.
T Consensus 96 ~G~~~~yPFD~Y~~~~i~v~~~~g~~~~~~~~----p~~v~~~~s~~gW~i~~~~~~~~~--------~~~~~~i~l~Rs 163 (256)
T PF14494_consen 96 DGDINNYPFDRYRTDPIRVSAFVGNGDNREPV----PARVTLTGSLSGWDISATRVADAD--------GGDGVDITLKRS 163 (256)
T ss_pred cCCccCCCCcccccceEEEEEEecCCCccccc----ceEEEEEcccCCeEEEeeecCCCC--------CceeEEEEEEcc
Confidence 466789999999998 6776543322111111 111111123556877664322211 455788999999
Q ss_pred cceeEEeeehhhHHHhhheeeEEeeeCCCC--CccEEEehhHHHHHHHh-hhhhhccCCCCCc-ccchhhh-hhHHHHHH
Q psy5812 250 IGYFVFQTYLPSILIVMLSWVSFWINHEAT--SARVALGITTVLTMTTI-STGVRSSLPRISY-VKAIDIY-LVMCFVFV 324 (365)
Q Consensus 250 ~~~y~~~~~lP~~li~~l~~~~f~l~~~~~--~~Ri~l~it~lL~~~~~-~~~~~~~lP~~~~-~~~i~~~-~~~~~~~~ 324 (365)
..--.+.+++=. ++.+|+.+++++-.... ..++...+.+.++.+.| +.-+.+.+|..+- -.++|.+ ++.+++.+
T Consensus 164 ~~~~~F~~~i~~-vm~~L~~~al~~ai~~~~~rr~~~~~~l~w~aA~LFAlp~lRN~lPGaPP~G~~iD~~~vlW~~i~l 242 (256)
T PF14494_consen 164 RGVLFFALFICL-VMWALATLALFVAIQVLRRRRKFEPPMLTWMAAMLFALPPLRNILPGAPPIGSWIDFAGVLWVLIAL 242 (256)
T ss_pred CcceehHHHHHH-HHHHHHHHHHHHHHHHHhCccccccchHHHHHHHHHhhhhHhccCCCCCCCcceEeeeehHHHHHHH
Confidence 887665443322 22333333333332111 13333444444444333 5668888999875 4567763 33445555
Q ss_pred HHHHHHhh
Q psy5812 325 FAALLEYA 332 (365)
Q Consensus 325 ~~~li~~~ 332 (365)
.+|++.++
T Consensus 243 ~~~m~~~v 250 (256)
T PF14494_consen 243 VASMVLYV 250 (256)
T ss_pred HHHHHHHH
Confidence 55555444
No 10
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=47.59 E-value=25 Score=27.31 Aligned_cols=11 Identities=18% Similarity=0.987 Sum_probs=5.2
Q ss_pred hhhhhHHHHHH
Q psy5812 314 DIYLVMCFVFV 324 (365)
Q Consensus 314 ~~~~~~~~~~~ 324 (365)
..|+.+|++++
T Consensus 61 ~iffavcI~l~ 71 (118)
T PF10856_consen 61 HIFFAVCILLI 71 (118)
T ss_pred EEehHHHHHHH
Confidence 44555554433
No 11
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=39.43 E-value=44 Score=20.09 Aligned_cols=26 Identities=15% Similarity=0.337 Sum_probs=17.4
Q ss_pred cccchhhhhhHHHHHHHHHHHHhhhe
Q psy5812 309 YVKAIDIYLVMCFVFVFAALLEYAAV 334 (365)
Q Consensus 309 ~~~~i~~~~~~~~~~~~~~li~~~iv 334 (365)
.+|++|.|+++--.+.++.++..++.
T Consensus 3 ~ltl~dfylc~l~~llflv~imliif 28 (43)
T PF11395_consen 3 HLTLFDFYLCFLSFLLFLVIIMLIIF 28 (43)
T ss_pred ceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 46788988887666666666554443
No 12
>PRK04257 hypothetical protein; Provisional
Probab=32.55 E-value=87 Score=22.56 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=12.7
Q ss_pred ceeEEEe--CCceEEEece
Q psy5812 147 NKLVRLN--GDGSITYGMR 163 (365)
Q Consensus 147 ~~~~~v~--~~G~V~~~~~ 163 (365)
...++|. .||.|.|..+
T Consensus 58 HRI~~I~~~~dG~vvw~r~ 76 (78)
T PRK04257 58 HRILEIVNKKTGEILYKKR 76 (78)
T ss_pred eEEEEEEEcCCCeEEEEEe
Confidence 3456777 8999999754
No 13
>PF06554 Olfactory_mark: Olfactory marker protein; InterPro: IPR009103 Olfactory marker protein (OMP) is a highly expressed, cytoplasmic protein found in mature olfactory sensory receptor neurons of all vertebrates. OMP is a modulator of the olfactory signal transduction cascade. The crystal structure of OMP reveals a beta sandwich consisting of eight strands in two sheets with a jelly-roll topology []. Three highly conserved regions have been identified as possible protein-protein interaction sites in OMP, indicating a possible role for OMP in modulating such interactions, thereby acting as a molecular switch [].; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0007608 sensory perception of smell; PDB: 1ZRI_A 1JYT_A 1JOD_B 1F35_A 1JOB_A.
Probab=27.56 E-value=23 Score=28.03 Aligned_cols=19 Identities=26% Similarity=0.725 Sum_probs=12.2
Q ss_pred CCCeEEecccccCccccccee
Q psy5812 111 EDEVLTLSGDFAEKIWVPDTF 131 (365)
Q Consensus 111 ~~~~i~~~~~~~~~IW~Pdi~ 131 (365)
..+.+++.. .+++|+||+.
T Consensus 63 ~pGkvtItg--tsQ~WTPDLT 81 (151)
T PF06554_consen 63 KPGKVTITG--TSQLWTPDLT 81 (151)
T ss_dssp SSEEEEEEE--B-TTS-TTTS
T ss_pred CCCeEEEEe--eccccCcchh
Confidence 456666654 6899999985
No 14
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=23.75 E-value=97 Score=18.66 Aligned_cols=19 Identities=26% Similarity=0.618 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHhhhe
Q psy5812 316 YLVMCFVFVFAALLEYAAV 334 (365)
Q Consensus 316 ~~~~~~~~~~~~li~~~iv 334 (365)
.+...|+++|++++.+.+.
T Consensus 18 ~F~l~mi~vFi~li~ytl~ 36 (38)
T PF09125_consen 18 AFALAMILVFIALIGYTLA 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445566677777766543
No 15
>PF15102 TMEM154: TMEM154 protein family
Probab=20.64 E-value=94 Score=25.31 Aligned_cols=12 Identities=17% Similarity=0.199 Sum_probs=4.5
Q ss_pred hheeeeeecccc
Q psy5812 332 AAVNYSYWADRA 343 (365)
Q Consensus 332 ~iv~~~~~~~~~ 343 (365)
+++..++++++.
T Consensus 76 V~lv~~~kRkr~ 87 (146)
T PF15102_consen 76 VCLVIYYKRKRT 87 (146)
T ss_pred HHheeEEeeccc
Confidence 333333344333
Done!