Query psy5812
Match_columns 365
No_of_seqs 189 out of 1394
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 18:37:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5812.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5812hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rhw_A Avermectin-sensitive gl 100.0 3.9E-66 1.3E-70 487.0 15.5 298 46-343 2-306 (347)
2 4aq5_A Acetylcholine receptor 100.0 3.1E-64 1.1E-68 487.1 14.5 309 43-354 25-340 (461)
3 2bg9_A Acetylcholine receptor 100.0 3.8E-64 1.3E-68 476.6 14.2 293 44-339 2-300 (370)
4 2bg9_E Acetylcholine receptor 100.0 1.7E-64 5.9E-69 478.9 10.8 297 45-343 2-306 (370)
5 2bg9_B Acetylcholine receptor 100.0 4.3E-64 1.5E-68 475.9 12.7 297 44-344 2-303 (370)
6 2bg9_C Acetylcholine receptor 100.0 2.8E-63 9.5E-68 470.2 13.7 295 44-344 2-305 (369)
7 4aq5_E Acetylcholine receptor 100.0 4E-63 1.4E-67 483.0 10.6 309 44-354 1-324 (488)
8 4aq5_B Acetylcholine receptor 100.0 4.8E-63 1.6E-67 483.1 10.9 308 43-354 25-346 (493)
9 3tlw_A GLR4197 protein, GLIC; 100.0 9.3E-62 3.2E-66 452.6 19.0 283 55-344 5-290 (321)
10 4aq5_C Acetylcholine receptor 100.0 6.3E-62 2.2E-66 477.8 8.7 308 44-354 23-351 (522)
11 3rqw_A ELIC pentameric ligand 100.0 3E-58 1E-62 429.1 14.2 287 66-361 8-311 (322)
12 2qc1_B Acetylcholine receptor 100.0 3.1E-46 1E-50 327.0 23.3 205 44-250 3-212 (212)
13 4aoe_A Acetylcholine-binding p 100.0 8.1E-46 2.8E-50 320.4 22.6 200 44-248 3-204 (205)
14 4aod_A Acetylcholine-binding p 100.0 1.2E-45 4E-50 319.9 22.5 200 44-248 3-204 (205)
15 3sq6_A ACHBP, neuronal acetylc 100.0 4.7E-45 1.6E-49 317.1 21.1 197 45-249 2-203 (204)
16 1uw6_A Acetylcholine-binding p 100.0 1.3E-42 4.3E-47 303.9 23.2 201 45-255 3-211 (211)
17 2wn9_A Soluble acetylcholine r 100.0 7E-43 2.4E-47 308.6 20.0 207 44-259 13-226 (228)
18 4afh_A ACHBP; acetylcholine-bi 100.0 6.9E-43 2.4E-47 307.9 18.9 205 44-257 4-221 (230)
19 3igq_A GLR4197 protein; plgic 100.0 2.1E-41 7.1E-46 292.8 17.5 192 58-253 4-197 (201)
20 2bj0_A Acetylcholine-binding p 100.0 6.1E-40 2.1E-44 285.1 22.3 195 46-249 3-203 (203)
21 2ksr_A Neuronal acetylcholine 99.8 1.9E-23 6.4E-28 172.3 -2.7 113 232-345 10-124 (164)
22 2lkg_A Acetylcholine receptor; 99.8 3.3E-23 1.1E-27 166.4 -8.7 102 234-336 33-135 (140)
23 2lly_A Neuronal acetylcholine 99.8 6E-21 2E-25 153.2 -0.9 101 245-346 2-104 (137)
24 1oed_A Acetylcholine receptor 99.7 2.6E-19 8.7E-24 155.9 -6.7 103 250-353 1-105 (227)
25 1oed_B Acetylcholine receptor 99.7 4.3E-19 1.5E-23 156.8 -6.8 103 250-353 1-105 (250)
26 1oed_E Acetylcholine receptor 99.7 7.4E-19 2.5E-23 156.1 -6.0 104 250-353 1-106 (260)
27 1oed_C Acetylcholine receptor 99.6 9.6E-19 3.3E-23 155.4 -6.6 103 250-353 1-105 (260)
28 1vry_A Glycine receptor alpha- 99.3 2.2E-13 7.7E-18 95.8 -0.1 65 280-344 2-66 (76)
29 1mot_A Glycine receptor alpha- 89.9 0.015 5.1E-07 32.3 -2.5 27 280-306 2-28 (28)
No 1
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=100.00 E-value=3.9e-66 Score=486.96 Aligned_cols=298 Identities=37% Similarity=0.762 Sum_probs=272.4
Q ss_pred HHHHHHHHh-hCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecc-cc
Q psy5812 46 VTQTISQLL-HGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSG-DF 121 (365)
Q Consensus 46 ~~~L~~~Ll-~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~-~~ 121 (365)
+++|+++|| ++||+.+||+.+ ++|+.|.+++.+.+|.++||++|++++++|++++|+|+||+||| +++++.... .+
T Consensus 2 ~~~L~~~Ll~~~Yd~~~RP~~~~~~~v~V~~~l~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~p~~~~~~~~l~~~~ 81 (347)
T 3rhw_A 2 DSKILAHLFTSGYDFRVRPPTDNGGPVVVSVNMLLRTISKIDVVNMEYSAQLTLRESWIDKRLSYGVKGDGQPDFVILTV 81 (347)
T ss_dssp HHHHHHHHHHSCCCTTSCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCSSTTCSSSCSEEECCT
T ss_pred HHHHHHHHhhcCCCCCCCCCCCCCCcEEEEEEEEEEeeccccccceeEEEEEEEeeEEECcccCCCCccCCCceEEEecc
Confidence 689999999 999999999986 68999999999999999999999999999999999999999999 455443322 25
Q ss_pred cCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEE
Q psy5812 122 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMY 201 (365)
Q Consensus 122 ~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~ 201 (365)
.++||+||++++|++++..+.....+..++|++||+|.|.++.+.++.|++|+++||||+|+|+++|+||.|+.+++++.
T Consensus 82 ~~~IW~PDi~l~N~~~~~~~~~~~~n~~v~i~~~G~V~~~~~~~~~s~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~ 161 (347)
T 3rhw_A 82 GHQIWMPDTFFPNEKQAYKHTIDKPNVLIRIHNDGTVLYSVRISLVLSCPMYLQYYPMDVQQCSIDLASYAYTTKDIEYL 161 (347)
T ss_dssp TCCCCCCCEECTTEEEEEECCSSSCSEEEEEETTSEEEEEEEEEEEEECCCCCTTGGGCEEEEEEEEEESSCCTTTEEEE
T ss_pred hhceecCCEeeeccccccccccccccEEEEEeCCCCEEEecceEEEEEeeeeeccCCCcceeEEEEeccCcCChhhEEEE
Confidence 79999999999999988777666677788999999999999999999999999999999999999999999999999999
Q ss_pred eecC-Cccccc--ccccCCceeeceeeeeeeeecCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeCCC
Q psy5812 202 WKET-PVRGVE--EAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEA 278 (365)
Q Consensus 202 ~~~~-~~~~~~--~~~~~~w~l~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~~ 278 (365)
|..+ +....+ ....+||++.+.....+...+.++.|+++.+.++++|+++||++++++||++++++++++||+|+++
T Consensus 162 ~~~~~~~~~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~ 241 (347)
T 3rhw_A 162 WKEHSPLQLKVGLSSSLPSFQLTNTSTTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTA 241 (347)
T ss_dssp ECSSCSEEECTTSGGGCCSEEEEEEEEEECCEECSSCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTC
T ss_pred ecCCCceeecCcceeEccceEEeeEEeeEeeeeecccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCC
Confidence 9765 333333 5678999999988777777778899999999999999999999999999999999999999999999
Q ss_pred CCccEEEehhHHHHHHHhhhhhhccCCCCCcccchhhhhhHHHHHHHHHHHHhhheeeeeecccc
Q psy5812 279 TSARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADRA 343 (365)
Q Consensus 279 ~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~~~~i~~~~~~~~~~~~~~li~~~iv~~~~~~~~~ 343 (365)
+++|+++|+|+||++++++..+++.+|+++|+|+||+|+.+|+++++++++++++++++.+++++
T Consensus 242 ~~~Rv~lgit~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~~~v~~l~~~~~~ 306 (347)
T 3rhw_A 242 IPARVTLGVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTT 306 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSH
T ss_pred CcceEEEEeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 77999999999999999999999999999999999999999999999999999999999887764
No 2
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=100.00 E-value=3.1e-64 Score=487.14 Aligned_cols=309 Identities=18% Similarity=0.283 Sum_probs=271.4
Q ss_pred cchHHHHHHHHhhCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEeccc
Q psy5812 43 LANVTQTISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGD 120 (365)
Q Consensus 43 ~~~~~~L~~~Ll~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~ 120 (365)
.+++++|+++||++||+.+||+.+ ++|+.|.+++++.+|.++||+++.+++++|++++|+|+||+||| ++++++...+
T Consensus 25 ~~~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~~~l~~~W~D~rL~Wnp~~y~gi~~l~v 104 (461)
T 4aq5_A 25 SEHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRL 104 (461)
T ss_dssp CTTHHHHHHHHHHTCCSSCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTCBCCTTTHHHHSSEEE
T ss_pred CcHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeehhhhccceEEEEEEEEeeeeECcccCCChhhcCCccEEEe
Confidence 478999999999999999999985 78999999999999999999999999999999999999999999 6665555555
Q ss_pred ccCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEE
Q psy5812 121 FAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVM 200 (365)
Q Consensus 121 ~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l 200 (365)
+.++||+||++++|++++..+... ...++|++||+|.|.++.+.++.|++|+++||||+|+|+++|+||+|+.+++++
T Consensus 105 p~~~IW~PDi~l~N~~d~~~~~~~--~~~v~v~~dG~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l 182 (461)
T 4aq5_A 105 PSDDVWLPDLVLYNNADGDFAIVH--MTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSI 182 (461)
T ss_dssp EGGGSCCCCEEESSCCCSCCTTCS--SCEEEECSBCCEEECCEEEEEEECCCCGGGSSSSCEEEEEEEEESSCCTTTEEE
T ss_pred cCCCEECCceeeeccccccccccc--ccceEEcCCccEEEeccccccccccccccCCCCccCccCeEEeccccCCceEEE
Confidence 689999999999999988765433 345789999999999999999999999999999999999999999999999999
Q ss_pred EeecCCcccccccccCCceeeceeeeeeeeecC--CC-ceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeCC
Q psy5812 201 YWKETPVRGVEEAQLPQFTILGHETNDRKEKLA--TG-TYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHE 277 (365)
Q Consensus 201 ~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~--~~-~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~ 277 (365)
.+........+....+||++.+....+....+. ++ +|+++.+.++++|+++||++++++|+++++++++++||+|++
T Consensus 183 ~~~~~~~~l~~~~~~~eW~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~ 262 (461)
T 4aq5_A 183 SPESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTD 262 (461)
T ss_dssp ECCCCCCSGGGCCTTCSSEEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeccccccHHhhhccCceEEeeeeeEEEEEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEecccc
Confidence 988776666677789999999988766555443 45 899999999999999999999999999999999999999999
Q ss_pred CCCccEEEehhHHHHHHHhhhhhhccCCCCC-cccchhhhhhHHHHHHHHHHHHhhheee-eeeccccccCCCCCCCCC
Q psy5812 278 ATSARVALGITTVLTMTTISTGVRSSLPRIS-YVKAIDIYLVMCFVFVFAALLEYAAVNY-SYWADRAKKKPKAKEPTP 354 (365)
Q Consensus 278 ~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~-~~~~i~~~~~~~~~~~~~~li~~~iv~~-~~~~~~~~~~~~~~~~~~ 354 (365)
++ +|+++++|+||++++++..+++.+|+++ ++|+||+|+.+||+++++++++++++.. ++|.+..++.|+|.+..-
T Consensus 263 s~-eRv~LgiT~LLt~tvfl~~v~~~LP~tS~~vplI~~y~~~~m~~v~~sll~tv~Vl~l~~r~~~~~~mp~w~r~~~ 340 (461)
T 4aq5_A 263 SG-EKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHHRSPSTHTMPQWVRKIF 340 (461)
T ss_dssp CG-GGTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHHCCTTTC----------
T ss_pred cc-ceeehhHHHHHHHHHHHHHHHhhcCcccCCcCHHHHHHHHHHHHHHHHHHHHhhheeeeccCCCCCCCCHHHHHHH
Confidence 97 9999999999999999999999999998 7999999999999999999999887654 556777788888887643
No 3
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=3.8e-64 Score=476.57 Aligned_cols=293 Identities=19% Similarity=0.304 Sum_probs=266.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecccc
Q psy5812 44 ANVTQTISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDF 121 (365)
Q Consensus 44 ~~~~~L~~~Ll~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~ 121 (365)
+.+++|+++||++||+.+||..+ ++|++|.+++++.+|.++||+++++++++|++++|+|+||+||| +++++....++
T Consensus 2 ~~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~p~~~~~i~~l~v~ 81 (370)
T 2bg9_A 2 EHETRLVANLLENYNKVIRPVEHHTHFVDITVGLQLIQLINVDEVNQIVETNVRLRQQWIDVRLRWNPADYGGIKKIRLP 81 (370)
T ss_dssp TTHHHHHHHHHHSCCTTCCCCCSSSSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEECCTTSCCCTTTHHHHSSEEEE
T ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCCCEEEEEEEEehHhhcchhhccceEEEEEEeeeeECCCccCChhhcCCccEEEec
Confidence 56899999999999999999875 88999999999999999999999999999999999999999999 55555444455
Q ss_pred cCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEE
Q psy5812 122 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMY 201 (365)
Q Consensus 122 ~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~ 201 (365)
.++||+||++++|++++..+... +..++|++||+|.|.++.+.++.|++|+++||||+|+|+++|+||.|+.+++++.
T Consensus 82 ~~~IW~PDi~~~N~~~~~~~~~~--~~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~ 159 (370)
T 2bg9_A 82 SDDVWLPDLVLYNNADGDFAIVH--MTKLLLDYTGKIMWTPPAIFKSYCEIIVTHFPFDQQNCTMKLGIWTYDGTKVSIS 159 (370)
T ss_dssp GGGSCCCCEEETTCCCSCEESCS--SCEEEECSSCCEEECCEEEEEEECCCCTTSSSSSCEEEEEEEEESSCCTTTEEEE
T ss_pred hhhccCCcEeccccccccccccc--cceEEEECCeeEEEecceEEEEECCCCcCCCCCCcceeeEEEEEecccCcEEEEE
Confidence 89999999999999987765432 4568899999999999999999999999999999999999999999999999999
Q ss_pred eecCCcccccccccCCceeeceeeeeeeeecCC---CceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeCCC
Q psy5812 202 WKETPVRGVEEAQLPQFTILGHETNDRKEKLAT---GTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEA 278 (365)
Q Consensus 202 ~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~---~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~~ 278 (365)
+..+.....+....+||++.+.........+.. ++|+++.+.++++|+++||++++++|+++++++++++||+|+++
T Consensus 160 ~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~ 239 (370)
T 2bg9_A 160 PESDRPDLSTFMESGEWVMKDYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDS 239 (370)
T ss_dssp CCCCCCSTTSCCTTCSSEEEEEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ecCCCcccccccccceEEEEcceEEEEEEecCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCC
Confidence 987776666777889999999877665554433 67999999999999999999999999999999999999999998
Q ss_pred CCccEEEehhHHHHHHHhhhhhhccCCCCCc-ccchhhhhhHHHHHHHHHHHHhhheeeeee
Q psy5812 279 TSARVALGITTVLTMTTISTGVRSSLPRISY-VKAIDIYLVMCFVFVFAALLEYAAVNYSYW 339 (365)
Q Consensus 279 ~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~-~~~i~~~~~~~~~~~~~~li~~~iv~~~~~ 339 (365)
++|+++|+|+||++++++..+++.+|++++ +|+||+|+.+|++++++++++++++..+++
T Consensus 240 -~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sl~~~~~v~~~~~ 300 (370)
T 2bg9_A 240 -GEKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSIIVTVVVINTHH 300 (370)
T ss_dssp -GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCeEEEeHHHHHHHHHHHHHHHhhCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 499999999999999999999999999997 999999999999999999999988755443
No 4
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=1.7e-64 Score=478.90 Aligned_cols=297 Identities=20% Similarity=0.329 Sum_probs=268.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEeccccc
Q psy5812 45 NVTQTISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDFA 122 (365)
Q Consensus 45 ~~~~L~~~Ll~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~~ 122 (365)
++++|+++||++||+.+||..+ ++|+.|.+++++.+|.++||+++++++++|++++|+|+||+||| +++++....++.
T Consensus 2 ~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~~ 81 (370)
T 2bg9_E 2 EEGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIPS 81 (370)
T ss_dssp CHHHHHHHHHHHCCSSSCCCSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTTTTCSCBCCCG
T ss_pred HHHHHHHHHHhccCCCCCCCCCCCCCEEEEEEEEehhhhchhhcccceeEeEEEeeEEECCCcCCChhhcCCeeEEeech
Confidence 6889999999999999999875 88999999999999999999999999999999999999999999 777777777779
Q ss_pred CcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEEe
Q psy5812 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYW 202 (365)
Q Consensus 123 ~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~ 202 (365)
++||+||+++.|++++..+..... .+.|++||+|.|.++.+.++.|++|+++||||+|+|+++|+||.|+.+++++.|
T Consensus 82 ~~IW~PDi~~~N~~~~~~~~~~~~--~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~~ 159 (370)
T 2bg9_E 82 ELLWLPDVVLENNVDGQFEVAYYA--NVLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQL 159 (370)
T ss_dssp GGSCCCCEEESSSCCSCCBSSSSC--CCEECSSSEEEECCEEEEEECCCCSSCSSSSSCCBCCEEEEESSSCTTSCCEEC
T ss_pred hccCCCCEeeccccCCcccccccc--cEEEECCccEEEecCEEEEEECcccccCCCCCeEEEEEEEEeeccccceeEEEe
Confidence 999999999999998876654433 356999999999999999999999999999999999999999999999999999
Q ss_pred ecC-CcccccccccCCceeeceeeeeeeee---cCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeCCC
Q psy5812 203 KET-PVRGVEEAQLPQFTILGHETNDRKEK---LATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEA 278 (365)
Q Consensus 203 ~~~-~~~~~~~~~~~~w~l~~~~~~~~~~~---~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~~ 278 (365)
..+ .....+....+||++.+......... .+++.|+++.+.++++|+++||++++++|+++++++++++||+|+++
T Consensus 160 ~~~~~~~~~~~~~~~eW~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a 239 (370)
T 2bg9_E 160 SAEEGIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQA 239 (370)
T ss_dssp CCSCCCGGGSCCTTSSEEEEECCCCEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCCcccHhhcccccEEEEecceeEEEEEecccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEecccc
Confidence 876 55555667789999998876655432 35789999999999999999999999999999999999999999996
Q ss_pred CCccEEEehhHHHHHHHhhhhhhccCCCCCc-ccchhhhhhHHHHHHHHHHHHhhheeee-eecccc
Q psy5812 279 TSARVALGITTVLTMTTISTGVRSSLPRISY-VKAIDIYLVMCFVFVFAALLEYAAVNYS-YWADRA 343 (365)
Q Consensus 279 ~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~-~~~i~~~~~~~~~~~~~~li~~~iv~~~-~~~~~~ 343 (365)
.++|+++|+|+||++++++..+++.+|+++| +|+||+|+.+|++++++++++++++..+ +|.+..
T Consensus 240 ~~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~~~~ 306 (370)
T 2bg9_E 240 GGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRTPNT 306 (370)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCSTTT
T ss_pred CcceeEEeeeHHHHHHHHHHHHHHhCCCccCCCChHHHHHHHHHHHHHHHHHHHhhheeeeccCCCC
Confidence 6799999999999999999999999999998 9999999999999999999999887544 444333
No 5
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=4.3e-64 Score=475.91 Aligned_cols=297 Identities=22% Similarity=0.389 Sum_probs=267.3
Q ss_pred chHHHHHHHHhhCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecccc
Q psy5812 44 ANVTQTISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDF 121 (365)
Q Consensus 44 ~~~~~L~~~Ll~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~ 121 (365)
+.+++|+++||++||+.+||..+ ++|+.|.+++++.+|.++||+++++++++|++++|+|+||+||| +++++....++
T Consensus 2 ~~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~v~ 81 (370)
T 2bg9_B 2 VMEDTLLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSIP 81 (370)
T ss_dssp TTHHHHHHHHHHHCCTTCCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTSCCCTTTTSSCSEEEEE
T ss_pred hHHHHHHHHHHhcCCCCCCCCCCCCCCEEEEEEEEehhhhhhhccccceEEEEEEeeeeECcccCcCccccCCeeEEEec
Confidence 56899999999999999999875 88999999999999999999999999999999999999999999 66666555556
Q ss_pred cCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEE
Q psy5812 122 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMY 201 (365)
Q Consensus 122 ~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~ 201 (365)
.++||+||++++|++++..+.... ..+.|++||+|.|..+.+.++.|++|+++||||+|+|+++|+||.|+.+++++.
T Consensus 82 ~~~IW~PDi~~~N~~~~~~~~~~~--~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~l~ 159 (370)
T 2bg9_B 82 SDDVWQPDIVLMNNNDGSFEITLH--VNVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVILQ 159 (370)
T ss_dssp SSSSCCCCEEESSCCCSCEESSSS--CEEEEETTSEEEECCEEEEEECCCCTTCSSSTTCCCCEEEEEESSCCBTSCEEE
T ss_pred hhhccCCCcccccccccccccccc--ceEEEeCCceEEEEecceEEEEccCcccCCCCCceeeeEEEEeccccccEEEEE
Confidence 899999999999999887655433 346799999999999999999999999999999999999999999999999999
Q ss_pred e-ecCCcccccccccCCceeeceeeeeeeeecCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeCCCCC
Q psy5812 202 W-KETPVRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATS 280 (365)
Q Consensus 202 ~-~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~~~~ 280 (365)
| ..+.....+....+||++.+...... ...+++.|+++.+.++++|+++||++++++|+++++++++++||+|+++ +
T Consensus 160 ~~~~~~~~~~~~~~~~eW~l~~~~~~~~-y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~~-~ 237 (370)
T 2bg9_B 160 HALDAMINQDAFTENGQWSIEHKPSRKN-WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDA-G 237 (370)
T ss_dssp CSCCCCCSTTSCCTTCSSEECCCCEEEC-CCTTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTTC-T
T ss_pred eccCCccccccccccceEEEeccceEEe-ecCCCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCCC-C
Confidence 9 55555556667789999999877655 4556789999999999999999999999999999999999999999995 6
Q ss_pred ccEEEehhHHHHHHHhhhhhhccCCCCCc-ccchhhhhhHHHHHHHHHHHHhhhe-eeeeeccccc
Q psy5812 281 ARVALGITTVLTMTTISTGVRSSLPRISY-VKAIDIYLVMCFVFVFAALLEYAAV-NYSYWADRAK 344 (365)
Q Consensus 281 ~Ri~l~it~lL~~~~~~~~~~~~lP~~~~-~~~i~~~~~~~~~~~~~~li~~~iv-~~~~~~~~~~ 344 (365)
+|+++|+|+||++++++..+++.+|+++| +|+||+|+.+|++++++++++++++ +++++.+..+
T Consensus 238 ~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~~~~~ 303 (370)
T 2bg9_B 238 EKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTH 303 (370)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTC
T ss_pred ceEEEEehHHHHHHHHHHHHHhhCCCccccccHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC
Confidence 99999999999999999999999999998 9999999999999999999998765 5555554443
No 6
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=100.00 E-value=2.8e-63 Score=470.19 Aligned_cols=295 Identities=19% Similarity=0.364 Sum_probs=263.6
Q ss_pred chHHHHHHHHhh--CCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecc
Q psy5812 44 ANVTQTISQLLH--GYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSG 119 (365)
Q Consensus 44 ~~~~~L~~~Ll~--~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~ 119 (365)
+.+++|+++||+ +||+.+||..+ ++|+.|.+++++.+|.++||+++++++++|++++|+|+||+||| +++++....
T Consensus 2 ~~~~~L~~~Ll~~~~Yd~~~RP~~~~~~pv~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~w~~~~~~~i~~l~ 81 (369)
T 2bg9_C 2 NEEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILR 81 (369)
T ss_dssp CSHHHHHHHHTTTTTSCSSSCCSSSSSSCCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTTCCCCCCCCTCSCEE
T ss_pred chHHHHHHHHhcccCCCCCCCCCCCCCCCEEEEEEEEehhhccccccccceEEEEEEeeeeECCCcccCccccCCeeEEE
Confidence 468999999999 99999999875 88999999999999999999999999999999999999999999 666665555
Q ss_pred cccCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEE
Q psy5812 120 DFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVV 199 (365)
Q Consensus 120 ~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~ 199 (365)
++.++||+||+++.|++++..+.... ..+.|++||+|.|..+.+.++.|++|+++||||+|+|+++|+||+|+.++++
T Consensus 82 v~~~~IW~PDi~~~N~~~~~~~~~~~--~~~~i~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~i~ 159 (369)
T 2bg9_C 82 LRPELIWIPDIVLQNNNDGQYNVAYF--CNVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEIS 159 (369)
T ss_dssp ECGGGSCCCCEEETTTCSSCCBSSSS--CCEEECSSSEEEECCEEEEEECCSCGGGSSSTTCCEEEEEEEESSCCTTTCE
T ss_pred ecHHhccCCcEecccccccccccccc--ccEEEECCccEEEecCEEEEEECcCcccCCCCCceEeeEEEEEecccCceEE
Confidence 56899999999999999887665433 3467999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCcccccccccCCceeeceeeeeeeee-c--CCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeC
Q psy5812 200 MYWKETPVRGVEEAQLPQFTILGHETNDRKEK-L--ATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINH 276 (365)
Q Consensus 200 l~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~-~--~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~ 276 (365)
+.| .....+....+||++.+......... + ++++|+++.+.++++|+++||++++++|+++++++++++||+|+
T Consensus 160 l~~---~~~~~~~~~~~ew~l~~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~ 236 (369)
T 2bg9_C 160 MDL---IIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPA 236 (369)
T ss_dssp EEC---CCGGGSCCTTSSEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEE---ecccccceeCCEEEEeeeeEEEEEEecCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecC
Confidence 998 22334556788999999877665533 3 57899999999999999999999999999999999999999999
Q ss_pred CCCCccEEEehhHHHHHHHhhhhhhccCCCCCc-ccchhhhhhHHHHHHHHHHHHhhhe-eeeeeccccc
Q psy5812 277 EATSARVALGITTVLTMTTISTGVRSSLPRISY-VKAIDIYLVMCFVFVFAALLEYAAV-NYSYWADRAK 344 (365)
Q Consensus 277 ~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~-~~~i~~~~~~~~~~~~~~li~~~iv-~~~~~~~~~~ 344 (365)
++ ++|+++|+|+||++++++..+++.+|+++| +|+||+|+.+|++++++++++++++ +++++.+..+
T Consensus 237 ~~-~~Rv~lgit~lLt~t~~~~~~~~~lP~~S~~vp~i~~~~~~~~~~v~~sll~~v~v~~~~~r~~~~~ 305 (369)
T 2bg9_C 237 ES-GEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRTPSTH 305 (369)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTC
T ss_pred CC-CCeEEEEhHHHHHHHHHHHHHHHhCCCCccCccHHHHHHHHHHHHHHHHHHHHhheeeeeccCCCCC
Confidence 95 699999999999999999999999999998 9999999999999999999998755 5555554443
No 7
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=100.00 E-value=4e-63 Score=483.05 Aligned_cols=309 Identities=20% Similarity=0.332 Sum_probs=268.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecccc
Q psy5812 44 ANVTQTISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDF 121 (365)
Q Consensus 44 ~~~~~L~~~Ll~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~ 121 (365)
+.+++|+++||++||+.+||+.+ ++|+.|.+++++.+|.++||++|++++++|++++|+|+||+||| ++++++...++
T Consensus 1 ~~e~rL~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v~ 80 (488)
T 4aq5_E 1 NEEGRLIEKLLGDYDKRIKPAKTLDHVIDVTLKLTLTNLISLNEKEEALTTNVWIEIQWNDYRLSWNTSEYEGIDLVRIP 80 (488)
T ss_dssp CCHHHHHHHHHHHCCSSSCCCSSTTSCCCEEEEEEEEEECCCBTTTTBEEEEEEEEEEEECCTTCCCTTTTTTCSCCCCC
T ss_pred ChHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeeccccccceeeeeeeeeeEEECcccCcCchhcCCceEEecC
Confidence 36899999999999999999985 78999999999999999999999999999999999999999999 78888888888
Q ss_pred cCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEE
Q psy5812 122 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMY 201 (365)
Q Consensus 122 ~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~ 201 (365)
.++||+||++++|++++..+.....+ +.|++||+|.|..+.+.++.|++|+++||||+|+|+++|+||.|+.+++++.
T Consensus 81 ~~~IW~PDi~l~N~~d~~~~~~~~~n--v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~ 158 (488)
T 4aq5_E 81 SELLWLPDVVLENNVDGQFEVAYYAN--VLVYNDGSMYWLPPAIYRSTCPIAVTYFPFDWQNCSLVFRSQTYNAHEVNLQ 158 (488)
T ss_dssp TTSSCCCCEECSSSCCSCCBSCSSSC--CCBCTTSEEEECCEEBCEECCCCSSSSSSSSCCCCCEEEEESSSCSSSCCEE
T ss_pred ccCEECCceehhcccccccccccccc--EEEeCCceEEEecceeEEeecccccccCCCcCceeeEEeeeeccccceEEEE
Confidence 99999999999999998766544433 5699999999999999999999999999999999999999999999999999
Q ss_pred eecCC--------cccccccccCCceeeceeeeeeee-ec--CCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheee
Q psy5812 202 WKETP--------VRGVEEAQLPQFTILGHETNDRKE-KL--ATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWV 270 (365)
Q Consensus 202 ~~~~~--------~~~~~~~~~~~w~l~~~~~~~~~~-~~--~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~ 270 (365)
|..++ ....+....+||++.+........ .+ +++.|+++.+.|+++|+++||++++++||+++++++++
T Consensus 159 ~~~~~~~~~~~~~~d~~~~~~~~eW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~l 238 (488)
T 4aq5_E 159 LSAEEGEVVEWIHIDPEDFTENGEWTIRHRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVL 238 (488)
T ss_dssp CCCSCC-------CGGGSCCTTCSEEEEECCCEEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHH
T ss_pred eccCCCcceeeeeccHHHccccceEEEEeeEEEEEEeeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHH
Confidence 87643 122344567899998876544332 22 34569999999999999999999999999999999999
Q ss_pred EEeeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCCc-ccchhhhhhHHHHHHHHHHHHhhheee-eeeccccccCCC
Q psy5812 271 SFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISY-VKAIDIYLVMCFVFVFAALLEYAAVNY-SYWADRAKKKPK 348 (365)
Q Consensus 271 ~f~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~-~~~i~~~~~~~~~~~~~~li~~~iv~~-~~~~~~~~~~~~ 348 (365)
+||+|+++.++|+++++|+||++++++..+++.+|++++ +|+||+|+++||+++++++++++++.. ++|.+..++.|+
T Consensus 239 sF~Lp~~a~~eRvsLgIt~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~~Sll~tv~Vlnl~~r~~~~~~mp~ 318 (488)
T 4aq5_E 239 VYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSLVIVTNCVIVLNVSLRTPNTHSLSE 318 (488)
T ss_dssp HHHHHHHSCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCSTTTCC---
T ss_pred HhcCCccccCceEEEehHHHHHHHHHHHHHHhhCCccccCccHHHHHHHHHHHHHHHHHHHHhhEEEEEccCCCCCcCCh
Confidence 999999966799999999999999999999999999998 999999999999999999999887654 557777788888
Q ss_pred CCCCCC
Q psy5812 349 AKEPTP 354 (365)
Q Consensus 349 ~~~~~~ 354 (365)
|.+..-
T Consensus 319 w~r~~~ 324 (488)
T 4aq5_E 319 KIKHLF 324 (488)
T ss_dssp ------
T ss_pred hHhhhh
Confidence 887643
No 8
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=100.00 E-value=4.8e-63 Score=483.06 Aligned_cols=308 Identities=21% Similarity=0.356 Sum_probs=265.5
Q ss_pred cchHHHHHHHHhhCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEeccc
Q psy5812 43 LANVTQTISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGD 120 (365)
Q Consensus 43 ~~~~~~L~~~Ll~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~ 120 (365)
.+.+++|+++||++||+.+||+.+ ++|++|.+++++.+|.++||++|++++++|++++|+|+||+||| ++++++...+
T Consensus 25 ~~~e~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~v~l~l~~i~~vdE~~q~~t~~v~l~~~W~D~rL~Wnp~~y~gi~~l~v 104 (493)
T 4aq5_B 25 SVMEDTLLSVLFENYNPKVRPSQTVGDKVTVRVGLTLTSLLILNEKNEEMTTSVFLNLAWTDYRLQWDPAAYEGIKDLSI 104 (493)
T ss_dssp CTTHHHHHHHHHHHCCSSSCSSCSSSSCCEEEEECCEEEEEEEETTTTEEEEEEECEEEEECTTCCCCHHHHSSCSCEEE
T ss_pred CcHHHHHHHHHHhcCCCCCCCCCCCCCcEEEEEEEEEeeeeeccccceEEEEEEEeecceECcccCCChhhcCCeeEEec
Confidence 478999999999999999999986 88999999999999999999999999999999999999999999 5555555555
Q ss_pred ccCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEE
Q psy5812 121 FAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVM 200 (365)
Q Consensus 121 ~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l 200 (365)
+.++||+||++++|++++..+..... .+.|++||+|.|.++.+.++.|++|+++||||+|+|+++|+||.|+.+++++
T Consensus 105 ~~~~IW~PDi~l~N~~d~~~~~~~~~--nv~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l 182 (493)
T 4aq5_B 105 PSDDVWQPDIVLMNNNDGSFEITLHV--NVLVQHTGAVSWHPSAIYRSSCTIKVMYFPFDWQNCTMVFKSYTYDTSEVIL 182 (493)
T ss_dssp CSCSSCCCCCEESSCCCSCEESSSSS--CEEECTTSEEEECCEEEEEECCSCTTCSSSTTCCCCEEEEECSSCCBTSCEE
T ss_pred ccccCccCcEEEeccccccccccccc--ceEEecCCCEEEeeeeeeeecccccccCCCccceeEEEEEeeecCccccEEE
Confidence 68999999999999998876554333 3679999999999999999999999999999999999999999999999999
Q ss_pred EeecCC----------cccccccccCCceeeceeeeeeeeecCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheee
Q psy5812 201 YWKETP----------VRGVEEAQLPQFTILGHETNDRKEKLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWV 270 (365)
Q Consensus 201 ~~~~~~----------~~~~~~~~~~~w~l~~~~~~~~~~~~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~ 270 (365)
.|..++ ....+....+||++.+.........+. +.|+++.+.|+++|+++||++++++||+++++++++
T Consensus 183 ~~~~~~~~~~~~~~~~~~l~~f~~~~eW~l~~~~~~~~~~~~~-~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~l 261 (493)
T 4aq5_B 183 QHALDAKGEREVKEIMINQDAFTENGQWSIEHKPSRKNWRSDD-PSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAIL 261 (493)
T ss_dssp ECCCCC---------CCSGGGCCTTCSSBCCCCCCEECCCTTS-SSBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHH
T ss_pred EeccCCCCccceecccccHHHhccccceeeeeeeEEEEeecCC-CCccEEEEEEEEEeccceeeehhhhhHHHHHHHHHh
Confidence 985432 223345567899999887655444333 489999999999999999999999999999999999
Q ss_pred EEeeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCCc-ccchhhhhhHHHHHHHHHHHHhhheee-eeeccccccCCC
Q psy5812 271 SFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISY-VKAIDIYLVMCFVFVFAALLEYAAVNY-SYWADRAKKKPK 348 (365)
Q Consensus 271 ~f~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~-~~~i~~~~~~~~~~~~~~li~~~iv~~-~~~~~~~~~~~~ 348 (365)
+||+|+++ ++|+++++|+||++++++..+++.+|++++ +|+||+|+.+||+++++++++++++.. +++.+..++.|+
T Consensus 262 sF~Lp~~s-~eRvsLgiT~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~~v~lsll~tv~Vl~l~~r~~~~~~mp~ 340 (493)
T 4aq5_B 262 VFYLPPDA-GEKMSLSISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMILVAFSVILSVVVLNLHHRSPNTHTMPN 340 (493)
T ss_dssp HHHSTTTC-GGGGTHHHHHHHHHHHHHHHHHHHTTTTTTSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTC----
T ss_pred EEecCCCC-CceEEehHHHHHHHHHHHHHHHhcCCccccCCCchHhHHHHHHHHHHHHHHHHHhheeeeccCCCCCcCCH
Confidence 99999997 599999999999999999999999999998 999999999999999999999887655 457777888898
Q ss_pred CCCCCC
Q psy5812 349 AKEPTP 354 (365)
Q Consensus 349 ~~~~~~ 354 (365)
|.+..-
T Consensus 341 w~r~~~ 346 (493)
T 4aq5_B 341 WIRQIF 346 (493)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 887643
No 9
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=100.00 E-value=9.3e-62 Score=452.57 Aligned_cols=283 Identities=20% Similarity=0.396 Sum_probs=258.3
Q ss_pred hCCCCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecccccCcccccceeee
Q psy5812 55 HGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDFAEKIWVPDTFFA 133 (365)
Q Consensus 55 ~~Yd~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~~~~IW~Pdi~~~ 133 (365)
+++|+++||..+++|++|.+++++.+|.++||+++++++++|++++|+|+||+||| +++ ++....+.++||+||+++.
T Consensus 5 aq~d~~~RP~~~~~~v~V~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~w~~~~~~-i~~~~~~~~~IW~PDi~l~ 83 (321)
T 3tlw_A 5 AQDMVSPPPPIADEPLTVNTGIYLIESYSLDDCAETFKVNAFLSLSWKDRRLAFDPVRSG-VRVKTYEPEAIWIPEIRFV 83 (321)
T ss_dssp ----CCCCCCSSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCSTTTC-CSSEECCGGGSCCCCEEES
T ss_pred hcCCCccCCCCCCCCEEEEEEEEEEeecceeccCcEEEEEEEEeeEEECcccCCCCccCC-eeeecccccCeEcCcEEee
Confidence 47899999998899999999999999999999999999999999999999999999 555 7777788999999999999
Q ss_pred cCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEEeecCCccccccc
Q psy5812 134 NDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEA 213 (365)
Q Consensus 134 N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~~~~~~~~~~~ 213 (365)
|++++. ...+..++|++||+|.|..+.+.++.|++|+++||||+|+|+++|+||.|+.+++++.+..++....+..
T Consensus 84 N~~~~~----~~~~~~~~v~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~ 159 (321)
T 3tlw_A 84 NVENAR----DADVVDISVSPDGTVQYLERFSARVLSPLDFRRYPFDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDV 159 (321)
T ss_dssp SBSSCC----EEEEEEEEECTTCEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEEECCSSCCEEEEECGGGCEECTTC
T ss_pred cccccc----cccceeEEEeCCccEEEecceEEEEEEEeecccCCCCceeEeEEEecccCChhhEEEEEcCCcccccccc
Confidence 998875 3456778999999999999999999999999999999999999999999999999999987766666778
Q ss_pred ccCCceeeceeeeeeee--ecCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeCCCCCccEEEehhHHH
Q psy5812 214 QLPQFTILGHETNDRKE--KLATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVL 291 (365)
Q Consensus 214 ~~~~w~l~~~~~~~~~~--~~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~~~~~Ri~l~it~lL 291 (365)
.++||++.+.....+.. ..+++.|+++.+.+++||+++||++++++|+++++++++++|| |+++ ++|+++++|+||
T Consensus 160 ~~~ew~l~~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~~-~~Rv~l~it~lL 237 (321)
T 3tlw_A 160 FLTGWDIESFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STSY-EANVTLVVSTLI 237 (321)
T ss_dssp CBTTEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCCH-HHHHHHHHHHHH
T ss_pred cccceEEEeeEeEEeeEEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCCC-CCcEEEEhhHHH
Confidence 89999999988765443 3467899999999999999999999999999999999999999 7766 599999999999
Q ss_pred HHHHhhhhhhccCCCCCcccchhhhhhHHHHHHHHHHHHhhheeeeeeccccc
Q psy5812 292 TMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADRAK 344 (365)
Q Consensus 292 ~~~~~~~~~~~~lP~~~~~~~i~~~~~~~~~~~~~~li~~~iv~~~~~~~~~~ 344 (365)
++++++..+++.+|+++++|+||+|+.+|++++++++++++++++++++++..
T Consensus 238 ~~t~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~v~v~~l~~~~~~~ 290 (321)
T 3tlw_A 238 AHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPA 290 (321)
T ss_dssp HHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccc
Confidence 99999999999999999999999999999999999999999999988766654
No 10
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=100.00 E-value=6.3e-62 Score=477.82 Aligned_cols=308 Identities=18% Similarity=0.332 Sum_probs=262.5
Q ss_pred chHHHHHHHHh--hCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecc
Q psy5812 44 ANVTQTISQLL--HGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSG 119 (365)
Q Consensus 44 ~~~~~L~~~Ll--~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~ 119 (365)
+.+++|+++|| ++||+.+||+.+ ++|+.|.+++++.+|.++||++|++++++|++++|+|+||+||| ++++++...
T Consensus 23 ~~e~rL~~~Ll~~~~Yd~~~RPv~~~~~pv~V~v~l~l~~I~~VdE~~q~~t~~vwl~q~W~D~RL~Wnp~~y~gi~~l~ 102 (522)
T 4aq5_C 23 NEEERLINDLLIVNKYNKHVRPVKHNNEVVNIALSLTLSNLISLKETDETLTTNVWMDHAWYDHRLTWNASEYSDISILR 102 (522)
T ss_dssp TTCTTTTTTSCSTTTSCSSSCCSSSSSSCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCCCCCCTCSCEE
T ss_pred cHHHHHHHHhhcccCCCCCCCCCCCCCCcEEEEEEEEeeecccccccccEEEEEEEEeeeEeCcccCCCchhcCCceEEe
Confidence 67789999999 999999999985 78999999999999999999999999999999999999999999 677766666
Q ss_pred cccCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEE
Q psy5812 120 DFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVV 199 (365)
Q Consensus 120 ~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~ 199 (365)
++.++||+||++++|++++..+..... .+.|++||+|.|.++.+.++.|++|+++||||+|+|+++|+||.|+.++++
T Consensus 103 vp~~~IW~PDi~l~N~~d~~~~~~~~~--nv~V~~dG~V~~~~~~~~~ssC~mdl~~FPfD~Q~C~L~f~S~~Y~~~~v~ 180 (522)
T 4aq5_C 103 LRPELIWIPDIVLQNNNDGQYNVAYFC--NVLVRPNGYVTWLPPAIFRSSCPINVLYFPFDWQNCSLKFTALNYNANEIS 180 (522)
T ss_dssp ECGGGSCCCCEEETTTCSSCCBSCSSC--CEEECSSSEEEECCEEEEEECCCCTTTSCSTTCCEEEEEEEETTCCTTTCC
T ss_pred eccCCEECCcEeccccccCCccccccc--eEEEeCCccEEEEcccccccccccccCcCCCcCceEeEEEecccccCceeE
Confidence 678999999999999999876654433 356999999999999999999999999999999999999999999999999
Q ss_pred EEeecCC------------cccccccccCCceeeceeeeeeee-ec--CCCceeeeEEEEEEEeecceeEEeeehhhHHH
Q psy5812 200 MYWKETP------------VRGVEEAQLPQFTILGHETNDRKE-KL--ATGTYQRLSLSFKLQRNIGYFVFQTYLPSILI 264 (365)
Q Consensus 200 l~~~~~~------------~~~~~~~~~~~w~l~~~~~~~~~~-~~--~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li 264 (365)
+.|..+. .........+||++.+........ .+ +++.|+++.+.|+++|+++||++++++||+++
T Consensus 181 l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~li 260 (522)
T 4aq5_C 181 MDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLI 260 (522)
T ss_dssp EEC---------------CCSTTSCCTTCSEEEEECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred EEeccCcccccCccceeeeccHHHceecceEEEeeeEEEEEeeeccccCCCCcceEEEEEEEecccceeeeehhhHHHHH
Confidence 9987542 122344567899999876554332 22 34569999999999999999999999999999
Q ss_pred hhheeeEEeeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCCc-ccchhhhhhHHHHHHHHHHHHhhheee-eeeccc
Q psy5812 265 VMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRISY-VKAIDIYLVMCFVFVFAALLEYAAVNY-SYWADR 342 (365)
Q Consensus 265 ~~l~~~~f~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~-~~~i~~~~~~~~~~~~~~li~~~iv~~-~~~~~~ 342 (365)
+++++++||+|+++ ++|+++++|+||++++++..+++.+|++++ +|+||+|+.+||+++++++++++++.. ++|.+.
T Consensus 261 v~Ls~lsF~Lp~d~-~eRisLgIT~LLt~tvfl~~v~~~LP~tS~~vPlI~~y~~~~m~lv~lSll~tviVlnl~~r~~~ 339 (522)
T 4aq5_C 261 SFLAALAFYLPAES-GEKMSTAICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVVVNCGIVLNFHFRTPS 339 (522)
T ss_dssp HHHHHHHTTHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHheeecCCCc-CceEEehHHHHHHHHHHHHHHHhcCCcccCCccHHHHHHHHHHHHHHHHHHHHheEEEEEccCCC
Confidence 99999999999995 699999999999999999999999999997 999999999999999999999886654 557777
Q ss_pred cccCCCCCCCCC
Q psy5812 343 AKKKPKAKEPTP 354 (365)
Q Consensus 343 ~~~~~~~~~~~~ 354 (365)
.++.|+|.+..-
T Consensus 340 ~~~mp~wvr~~f 351 (522)
T 4aq5_C 340 THVLSTRVKQIF 351 (522)
T ss_dssp CC----------
T ss_pred CCCCChHHHHHH
Confidence 888898887643
No 11
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=100.00 E-value=3e-58 Score=429.13 Aligned_cols=287 Identities=21% Similarity=0.347 Sum_probs=249.0
Q ss_pred CCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccCCCCeEEec-----ccccCcccccceeeecCCCCcc
Q psy5812 66 GGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLS-----GDFAEKIWVPDTFFANDKNSFL 140 (365)
Q Consensus 66 ~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~~~~~i~~~-----~~~~~~IW~Pdi~~~N~~~~~~ 140 (365)
+++|+.|.+++++.+|.++||+++++++++|++++|+|+||+|+ +.+.+.+. +++.++||+||++++|++++..
T Consensus 8 ~~~pv~V~~~~~l~~i~~vde~~~~~t~~~~l~~~W~D~rL~~~-~~~~l~l~~~~~~~ip~~~IW~Pdi~l~N~~~~~~ 86 (322)
T 3rqw_A 8 DARPVDVSVSIFINKIYGVNTLEQTYKVDGYIVAQWTGKPRKTP-GDKPLIVENTQIERWINNGLWVPALEFINVVGSPD 86 (322)
T ss_dssp ---CEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECSCCCCS-TTSCEEEETHHHHHHHHTTCCCCCEEETTBSSCCE
T ss_pred CCCCEEEEEEEEEEeeccccccCcEEEEEEEEeeEEechhhCCC-CCCceeecchhhcccccccccCCcEEEEcccCccc
Confidence 46799999999999999999999999999999999999999995 45566554 3458999999999999998765
Q ss_pred ccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEEeecCC--cccccccccCCc
Q psy5812 141 HDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETP--VRGVEEAQLPQF 218 (365)
Q Consensus 141 ~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~~~~--~~~~~~~~~~~w 218 (365)
..+..++|++||+|.|..+.+.++.|++|+++||||+|+|+++|+||.|+.+++++.|+++. ... +. +++||
T Consensus 87 ----~~~~~~~i~~~G~V~~~~~~~~~~~C~~dl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~-~~-~~~ew 160 (322)
T 3rqw_A 87 ----TGNKRLMLFPDGRVIYNARFLGSFSNDMDFRLFPFDRQQFVLELEPFSYNNQQLRFSDIQVYTENID-NE-EIDEW 160 (322)
T ss_dssp ----EEEEEEEECTTSEEEEEEEEEEEEECCCCCTTTTSCEEEEEEEEEESSCSSEEEEEEEEECCSCSSS-SC-SSSSE
T ss_pred ----ccceeEEEeCCcCEEEeeceeEEEeccccccCCCCCCcEEEEEEEEcccCcceEEEEECCCcccccC-CC-CCCce
Confidence 45677899999999999999999999999999999999999999999999999999997654 222 23 78999
Q ss_pred ee-eceeee------eeeeec--CCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeCCCCCccEEEehhH
Q psy5812 219 TI-LGHETN------DRKEKL--ATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITT 289 (365)
Q Consensus 219 ~l-~~~~~~------~~~~~~--~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~~~~~Ri~l~it~ 289 (365)
++ .+.... .+...+ +++.|+++.+.+++||++.||++++++|+++++++++++||+| ++ ++|+++++|+
T Consensus 161 ~l~~~~~~~~~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~~-~~Rv~l~it~ 238 (322)
T 3rqw_A 161 WIRGKASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-SF-SERLQTSFTL 238 (322)
T ss_dssp EECCSCEECCEEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-SH-HHHHHHHHHH
T ss_pred EEEeeeEEEeeccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-CC-CCcEEEEEeh
Confidence 99 888776 333333 3789999999999999999999999999999999999999999 55 5999999999
Q ss_pred HHHHHHhhhhhhccCCCCCcccchhhhhhHHHHHHHHHHHHhhheeeeee-ccccccCCCCCCCCCCcccccc
Q psy5812 290 VLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYW-ADRAKKKPKAKEPTPLGNYIRL 361 (365)
Q Consensus 290 lL~~~~~~~~~~~~lP~~~~~~~i~~~~~~~~~~~~~~li~~~iv~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 361 (365)
+|++++++..+++.+|+++++|+||+|+.+|+++++++++++++++++++ .+..++.|+|.++.-...+.++
T Consensus 239 lL~~~~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~~~v~~l~~~~~~~~~~p~w~r~~fl~~~~~~ 311 (322)
T 3rqw_A 239 MLTVVAYAFYTSNILPRLPYTTVIDQMIIAGYGSIFAAILLIIFAHHRQANGVEDDLLIQRCRLAFPLGFLAI 311 (322)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSSSCCCHHHHTCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887764 4555667777776444333333
No 12
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=100.00 E-value=3.1e-46 Score=327.03 Aligned_cols=205 Identities=20% Similarity=0.240 Sum_probs=185.2
Q ss_pred chHHHHHHHHhhCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecccc
Q psy5812 44 ANVTQTISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDF 121 (365)
Q Consensus 44 ~~~~~L~~~Ll~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~ 121 (365)
+.+++|+++||++||+.+||+.+ ++|+.|.+++.+.+|.++||+++.+++++|+++.|+|+||+||| +++++....++
T Consensus 3 ~~~~~L~~~Ll~~Yd~~~RP~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~i~~l~~~ 82 (212)
T 2qc1_B 3 EHETRLEAKLFEDYSSVVRPVEDHREIVQVTVGLQLIQLINVDEVNQIVTTNVRLKQQWVDYNLKWNPDDYGGVKKIHIP 82 (212)
T ss_dssp HHHHHHHHHHHTTCCSSSCSCSSTTSCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECTTCCCCGGGGTTCCEEEEC
T ss_pred hHHHHHHHHHHHhCCCCCCCccCCCCcEEEEEEEEEecccccccCCcEEEEEEEEeeEEECCCcccChhhcCCeeEEEcc
Confidence 57899999999999999999885 78999999999999999999999999999999999999999999 56665555556
Q ss_pred cCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEE
Q psy5812 122 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMY 201 (365)
Q Consensus 122 ~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~ 201 (365)
.++||+||++++|++++.++.... ..++|++||+|.|.+++++++.|+||+++||||+|+|+|+|+||+|+.+++++.
T Consensus 83 ~~~iW~PDi~~~N~~~~~~~~~~~--~~~~v~~~G~V~~~~~~~~~~~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~ 160 (212)
T 2qc1_B 83 SEKIWRPDVVLYNNADGDFAIVKF--TKVLLDYTGHITWTPPAIFKSYCEIIVTHFPFDEQNCSMKLGTRTYDGSAVAIN 160 (212)
T ss_dssp GGGSCCCCEEECCBTTTSSCEECC--CCEEEETTCEEEECCEEEEEEEEEECCSSSSCCEEEEEEEEEESSCCTTTEEEE
T ss_pred hhhccCCceeccccccccccccce--eeEEEECCeeEEEEeeeEEEEEccceeecCCCCceEEeEEEEcccccCceEEEE
Confidence 899999999999999887654433 568899999999999999999999999999999999999999999999999999
Q ss_pred eecCCcccccccccCCceeeceeeeeeeeecCC---CceeeeEEEEEEEeec
Q psy5812 202 WKETPVRGVEEAQLPQFTILGHETNDRKEKLAT---GTYQRLSLSFKLQRNI 250 (365)
Q Consensus 202 ~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~~---~~ys~l~~~~~l~R~~ 250 (365)
|..+.....+...++||++.+.........+.. ++|+++.+.|+|+|+|
T Consensus 161 ~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~~y~~i~~~~~l~R~p 212 (212)
T 2qc1_B 161 PESDQPDLSNFMESGEWVIKEARGWKHWVFYSCCPTTPYLDITYHFVMQRLP 212 (212)
T ss_dssp ESCSSCBCTTCCCCSSEEEEEEEEEEEEEEETTCSSCCEEEEEEEEEEEECC
T ss_pred ecccccchhhCccCCCEEEEEeEEEEEEEecCCCCCCCeeEEEEEEEEEECc
Confidence 988777777788899999999988776666643 7899999999999986
No 13
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=100.00 E-value=8.1e-46 Score=320.38 Aligned_cols=200 Identities=17% Similarity=0.306 Sum_probs=180.4
Q ss_pred chHHHHHHHHhhCCCCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccCCCCeEEecccccC
Q psy5812 44 ANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAE 123 (365)
Q Consensus 44 ~~~~~L~~~Ll~~Yd~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~~~~~i~~~~~~~~ 123 (365)
+++++|+++||++||+..||+.+++|+.|.+++.+.+|.++||++|.+++++|++++|+|+||+|||+++++....++.+
T Consensus 3 ~~e~~L~~~Ll~~Yn~~~rPv~~~~pv~V~~~l~l~~i~~vde~~q~~~~~~wl~~~W~D~rL~W~~~~~~i~~i~v~~~ 82 (205)
T 4aoe_A 3 KSREEIVKEILGRANPNNIPIVDEQPVKVSFKYSLQDIYTADVGTDQVELGLWLVISWKDRSLSWSNECTTFNELTLPSK 82 (205)
T ss_dssp HHHHHHHHHHHHTTCCSSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEEEGG
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCccEEEEEEEEEEEeeeEcccCCEEEEEEEEEEEEECCccccCCcCCCccEEEeCHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999998888777777899
Q ss_pred cccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEEee
Q psy5812 124 KIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWK 203 (365)
Q Consensus 124 ~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~ 203 (365)
+||+||++++|+++... ...+..++|++||+|.|.+++++++.|++| ..||||+|+|.|+||||+|+..++.+...
T Consensus 83 ~IW~PDi~l~N~~~~~~---~~~~~~v~v~~~G~V~~~~~~~~~s~C~~d-~~fPfD~Q~C~l~fgSw~y~~~~l~l~~~ 158 (205)
T 4aoe_A 83 YIWLPHIEVYNSIGKPG---IHSDQLVRVYKDGTVTFVPQYTIRFSCALE-NVTTEQGAACTLKFGPWTYDVRDLVLDES 158 (205)
T ss_dssp GSCCCCCEETTBSSCCE---ECSCCEEEEETTSEEEECCEEEEEEECCCT-TSSSSSCEEEEEEEECSSCCTTTEEEECS
T ss_pred HhccccEEEeccccccc---cccceEEEEeCCcEEEEeCcEEEEEecccC-cCCCccCCeEEEEEECccCChheEEEecC
Confidence 99999999999986543 234567889999999999999999999999 89999999999999999999999999754
Q ss_pred cCCcccccccccCCceeeceeeeeeeeecC--CCceeeeEEEEEEEe
Q psy5812 204 ETPVRGVEEAQLPQFTILGHETNDRKEKLA--TGTYQRLSLSFKLQR 248 (365)
Q Consensus 204 ~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~--~~~ys~l~~~~~l~R 248 (365)
+.....+...++||++.+....+....|. +++|+.+.+.|+|+|
T Consensus 159 -~~~dl~~~~~n~EW~l~~~~~~r~~~~Y~CC~~~y~dit~~i~lrR 204 (205)
T 4aoe_A 159 -QQVDLTTYAGGERFQLIEAKQKVNKKTYPCCPQSFEDIELRVTFKK 204 (205)
T ss_dssp -SSCBCTTSCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred -cccchhccccCCcEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEE
Confidence 34455677889999999998887766554 678999999999999
No 14
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=100.00 E-value=1.2e-45 Score=319.93 Aligned_cols=200 Identities=18% Similarity=0.278 Sum_probs=181.3
Q ss_pred chHHHHHHHHhhCCCCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccCCCCeEEecccccC
Q psy5812 44 ANVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAE 123 (365)
Q Consensus 44 ~~~~~L~~~Ll~~Yd~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~~~~~i~~~~~~~~ 123 (365)
+++++|+++||++||+.+||+.+++|+.|.+++.+.+|.++||++|.+++++|+++.|+|+||+|||++++++...++.+
T Consensus 3 ~~~~~L~~dLl~~Y~~~~rPv~~~~pv~V~~~l~l~~i~~vde~~q~~t~~~wl~~~W~D~rL~W~~~~~~i~~i~v~~~ 82 (205)
T 4aod_A 3 RSRSEILQDVLSRCSPLNIPIEDDQPVKVSFEYSLQKIFRADVENDEVDIGLWTTLVWKDRCLNWFNEFTSFKELTVPIA 82 (205)
T ss_dssp HHHHHHHHHHHHTTCSSSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECCCCCCSCCCSCCCEEEEEGG
T ss_pred hhHHHHHHHHHhcCCCcCCCCCCCccEEEEEEEEeeeeeeecccCCEEEEEEEEEEEEECCceeeCCcCCCccEeeccHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999998888888888899
Q ss_pred cccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEEee
Q psy5812 124 KIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWK 203 (365)
Q Consensus 124 ~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~ 203 (365)
+||+||++++|+++... ...+..++|++||+|.|.+++++++.|++|+..|||| |+|.|+||||+|+..++.+.+.
T Consensus 83 ~IW~PDi~l~N~~~~~~---~~~~~~~~v~~~G~V~~~~~~~~~s~C~~d~~~fPfD-Q~C~l~fgSw~y~~~~i~l~~~ 158 (205)
T 4aod_A 83 EIWTPDIFIFDSVGAPE---IFSDKLARVSQDGTVTYVPQLKVRLSCPLADLKLETG-VTCSLKSGSWTHSTQELTLEVN 158 (205)
T ss_dssp GSCCCCEEETTBSSCCE---ECSCCEEEEETTSEEEECCEEEEEEECCCTTSSSSSC-EEEEEEEEESSCCTTTEEEECS
T ss_pred hcCcCCEEEEcccccce---eecceEEEEecCCEEEEeccEEEEEEecCccccCCCC-cEEEEEEECccccccEEEEEEC
Confidence 99999999999987542 2345668899999999999999999999999999999 9999999999999999999986
Q ss_pred cCCcccccccccCCceeeceeeeeeeeecC--CCceeeeEEEEEEEe
Q psy5812 204 ETPVRGVEEAQLPQFTILGHETNDRKEKLA--TGTYQRLSLSFKLQR 248 (365)
Q Consensus 204 ~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~--~~~ys~l~~~~~l~R 248 (365)
. .....+...++||++.+....+....|. +++|+.+.+.|+|||
T Consensus 159 ~-~~dl~~~~~n~EW~l~~~~~~~~~~~Y~cc~~~Y~~it~~~~lrR 204 (205)
T 4aod_A 159 A-KVDLGDYASDTRFQLLNATQQVNRKQYPCCPETYEDTTLSFTFRK 204 (205)
T ss_dssp S-SCBCTTSCTTCSSEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred C-CcccccccccCCEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEC
Confidence 4 3455677889999999998877666554 678999999999977
No 15
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=100.00 E-value=4.7e-45 Score=317.08 Aligned_cols=197 Identities=15% Similarity=0.269 Sum_probs=177.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecccccC
Q psy5812 45 NVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDFAE 123 (365)
Q Consensus 45 ~~~~L~~~Ll~~Yd~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~~~ 123 (365)
.+++|+++||++||+.+||+.+++|+.|.+++.+.+|.++||+++.+++++|+++.|+|+||+||| +++++....++.+
T Consensus 2 ~e~~L~~~Ll~~Yd~~~RP~~~~~~v~V~~~~~l~~i~~v~e~~~~~t~~~~~~~~W~D~rL~w~~~~~~~i~~i~~~~~ 81 (204)
T 3sq6_A 2 FQRKLYKELVKNYNPDVIPTQRDRPVTVYFSLSLLQIMDVDEKNQVVDVVFWLQMSWTDHYLQWNVSEYPGVKQVSVPIS 81 (204)
T ss_dssp CCCHHHHHHTTTCCTTSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCTTTSSSCCEEEEEGG
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCcEEEEEEEEhhheeehhccccEEEEEEeeeeEEECCCcccChHHcCCccEEEcCHH
Confidence 467999999999999999998779999999999999999999999999999999999999999999 6777766666789
Q ss_pred cccccceeeecCCC--CccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEE
Q psy5812 124 KIWVPDTFFANDKN--SFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMY 201 (365)
Q Consensus 124 ~IW~Pdi~~~N~~~--~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~ 201 (365)
+||+||++++|+++ +.++. ..++|++||+|.|.++++.++.|+||+ +||||+|+|+|.|+||+|+.+++.+.
T Consensus 82 ~iW~PDi~~~N~~~~~~~~~~-----~~v~v~~~G~V~~~~~~~~~~~C~mdl-~fPfD~Q~C~l~f~S~~y~~~~v~l~ 155 (204)
T 3sq6_A 82 SLWVPDLAAYNAISKPEVLTP-----QLALVNSSGHVQYLPSIRQRFSCDVSG-VDTESGATCKLKFGSWTHHSRELDLQ 155 (204)
T ss_dssp GSCCCCEEETTBSSCCEECSC-----CEEEEETTSEEEECCEEEEEEECCCGG-GSSSSCEEEEEEEEESSCCTTTEEEE
T ss_pred HCcCCCEEeEcccccCCcccc-----cEEEEEeCCEEEEecCeeEEEeccccc-cCCCCCcEEEEEEEeecccCeEEEEE
Confidence 99999999999988 54432 268899999999999999999999999 99999999999999999999999998
Q ss_pred eecCCcccccccccCCceeeceeeeeeeeecC--CCceeeeEEEEEEEee
Q psy5812 202 WKETPVRGVEEAQLPQFTILGHETNDRKEKLA--TGTYQRLSLSFKLQRN 249 (365)
Q Consensus 202 ~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~~--~~~ys~l~~~~~l~R~ 249 (365)
+.. ....+...++||++.+.........+. +++|+.+.+.|+++|+
T Consensus 156 ~~~--~~~~~~~~~~eW~l~~~~~~~~~~~y~~c~~~y~~i~~~~~lrRr 203 (204)
T 3sq6_A 156 MQE--ADISGYIPYSRFELVGVTQKRSERFYECCKEPYPDVTFTVTFRKK 203 (204)
T ss_dssp CCC--CCCTTSCSSSSEEEEEEEEEEEEEECSSSSSEEEEEEEEEEEEEC
T ss_pred ecc--CCHHHcccCCCEEEEEeEEEEEEEeeCCCCCCcceEEEEEEEEEC
Confidence 653 334466789999999998887766654 7899999999999997
No 16
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=100.00 E-value=1.3e-42 Score=303.86 Aligned_cols=201 Identities=16% Similarity=0.296 Sum_probs=178.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCe-EEeccccc
Q psy5812 45 NVTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEV-LTLSGDFA 122 (365)
Q Consensus 45 ~~~~L~~~Ll~~Yd~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~-i~~~~~~~ 122 (365)
.+++|+++||++||+.+||+.+++|+.|.+++.+.+|.++||+++.+++++|+++.|+|+||+||| ++++ +. ++.
T Consensus 3 ~~~~ll~~Ll~~Yd~~~RP~~~~~~~~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~w~~~~~~~~l~---~~~ 79 (211)
T 1uw6_A 3 DRADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTLAWNSSHSPDQVS---VPI 79 (211)
T ss_dssp CHHHHHHHHHHHCCTTSCCCCTTCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGCCCCTTSCSEEE---EEG
T ss_pred cHHHHHHHHHHcCCCcCCCCCCCCcEEEEEEEEHHHhhchhhhCcEEEEEEEEEeEeECcccccChhhcCCeEE---ccH
Confidence 578999999999999999996688999999999999999999999999999999999999999999 5554 44 448
Q ss_pred CcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEee---eeeccCCCcceeEEEEEeeccccceeEE
Q psy5812 123 EKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACM---MDLHYYPLDNQNCTVEIESYGYTVLDVV 199 (365)
Q Consensus 123 ~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~---~d~~~fPfD~q~C~i~~~s~~~~~~~v~ 199 (365)
++||+||++++|++++. .... ...++|++||+|.|.+++++++.|+ ||++ |+|+|+|+|+||+|+.+++.
T Consensus 80 ~~iW~PDi~~~N~~~~~--~~~~-~~~~~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~S~~y~~~~i~ 152 (211)
T 1uw6_A 80 SSLWVPDLAAYNAISKP--EVLT-PQLARVVSDGEVLYMPSIRQRFSCDVSGVDTE----SGATCRIKIGSWTHHSREIS 152 (211)
T ss_dssp GGSCCCCEEETTBCSCC--EECS-CCEEEEETTSEEEECCEEEEEEECCCTTTTSS----SCEEEEEEEEESSCCTTTEE
T ss_pred HHccCCCEeeecccccc--ccce-eeEEEEeCCceEEEeCCEEEEEECCCCCCCCC----cceEeEEEEEcccccCceEE
Confidence 99999999999999876 2233 3778999999999999999999999 9999 99999999999999999999
Q ss_pred EEeecCCcccccccc-cCCceeeceeeeeeeeec--CCCceeeeEEEEEEEeecceeEE
Q psy5812 200 MYWKETPVRGVEEAQ-LPQFTILGHETNDRKEKL--ATGTYQRLSLSFKLQRNIGYFVF 255 (365)
Q Consensus 200 l~~~~~~~~~~~~~~-~~~w~l~~~~~~~~~~~~--~~~~ys~l~~~~~l~R~~~~y~~ 255 (365)
+.|..+++...+... ++||++.+.........+ ++++|+.+.+.|+++|+++||++
T Consensus 153 l~~~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~yyil 211 (211)
T 1uw6_A 153 VDPTTENSDDSEYFSQYSRFEILDVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211 (211)
T ss_dssp EEECCCSSCTTTTSCTTSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEECCCC---
T ss_pred EEecccccchhhhcccCCCEEEEeeEEEEEEEEeCCCCCCcceEEEEEEEEEccceeEC
Confidence 999887776677788 999999999877666555 37899999999999999999974
No 17
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=100.00 E-value=7e-43 Score=308.56 Aligned_cols=207 Identities=19% Similarity=0.269 Sum_probs=178.6
Q ss_pred chHHHHHHHHhhCCCCCCCCCCC-CCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccC-CCCeEEecccc
Q psy5812 44 ANVTQTISQLLHGYDIRLRPNFG-GDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSS-EDEVLTLSGDF 121 (365)
Q Consensus 44 ~~~~~L~~~Ll~~Yd~~~rP~~~-~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~-~~~~i~~~~~~ 121 (365)
+.+++|+++||++||+. |+.+ ++|+.|.+++.+.+|.++||+++.+++++|+++.|+|+||+||| +++++....++
T Consensus 13 ~~~~~L~~~Ll~~Yd~~--P~~~~~~pv~V~~~~~l~~i~~v~e~~~~~~~~~~l~~~W~D~rL~w~~~~y~~i~~l~~~ 90 (228)
T 2wn9_A 13 ANLMRLKSDLFNRSPMY--PGPTKDDPLTVTLGFTLQDIVKADSSTNEVDLVYYEQQRWKLNSLMWDPNEYGNITDFRTS 90 (228)
T ss_dssp HHHHHHHHHHHTSSCCC--CCCBTTBCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEECCGGGGTTCCEEEEE
T ss_pred cHHHHHHHHHHhhcCCC--cccCCCCCEEEEEEEEhhHhhhhhccccEEEEEEEEEEEEECCCccCCchhcCCeeEEEec
Confidence 78899999999999999 8764 88999999999999999999999999999999999999999999 66666655566
Q ss_pred cCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEee---eeeccCCCcceeEEEEEeeccccceeE
Q psy5812 122 AEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACM---MDLHYYPLDNQNCTVEIESYGYTVLDV 198 (365)
Q Consensus 122 ~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~---~d~~~fPfD~q~C~i~~~s~~~~~~~v 198 (365)
.++||+||++++|++++.++.. +..++|++||+|.|.+++++++.|+ ||++ |+|+|+|+|+||+|+.+++
T Consensus 91 ~~~IW~PDi~l~N~~~~~~~~~---~~~v~i~~~G~V~~~~~~~~~~~C~~~~mdl~----D~Q~C~l~f~Sw~y~~~~i 163 (228)
T 2wn9_A 91 AADIWTPDITAYSSTRPVQVLS---PQIAVVTHDGSVMFIPAQRLSFMCDPTGVDSE----EGATCAVKFGSWVYSGFEI 163 (228)
T ss_dssp GGGSCCCCEEESSBSSCCEECS---CCEEEEETEEEEEECCEEEEEEECCCTTTTST----TCEEEEEEEEESSCCTTTE
T ss_pred HHHccCCceecccccccccccc---cceEEEeCCeEEEEeCCEEEEEECCCCCCCCC----cCcEeeEEEEeecccccEE
Confidence 8999999999999998876543 6778999999999999999999999 9999 9999999999999999999
Q ss_pred EEEeecCCcccccccccCCceeeceeeeeeeeec--CCCceeeeEEEEEEEeecceeEEeeeh
Q psy5812 199 VMYWKETPVRGVEEAQLPQFTILGHETNDRKEKL--ATGTYQRLSLSFKLQRNIGYFVFQTYL 259 (365)
Q Consensus 199 ~l~~~~~~~~~~~~~~~~~w~l~~~~~~~~~~~~--~~~~ys~l~~~~~l~R~~~~y~~~~~l 259 (365)
.+.|..+.........++||++.+.........+ ++++|+++.+.|+++|+++||++++++
T Consensus 164 ~l~~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil 226 (228)
T 2wn9_A 164 DLKTDTDQVDLSSYYASSKYEILSATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL 226 (228)
T ss_dssp EEECSCSBCBCTTCCTTCSEEEEEEEEEEEEECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred EEEecCCccchhhceecCCEEEEEEEEEEEEEeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence 9999877666667778999999998877665544 458999999999999999999998865
No 18
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=100.00 E-value=6.9e-43 Score=307.88 Aligned_cols=205 Identities=16% Similarity=0.207 Sum_probs=175.4
Q ss_pred chHHHHHHHHhhCCCCCCC---CCCC-CCceEEEEEEEEeeecccccc----ccceeeeeEEEeEEecccccccC-CCCe
Q psy5812 44 ANVTQTISQLLHGYDIRLR---PNFG-GDPLYVGMDLTIASFDSISEV----SMDYTITMYLNQYWKDDRLAFSS-EDEV 114 (365)
Q Consensus 44 ~~~~~L~~~Ll~~Yd~~~r---P~~~-~~p~~V~~~i~l~~i~~vde~----~~~~~~~~~l~~~W~D~rL~wn~-~~~~ 114 (365)
..+++|+++||++||+.+| |+.+ ++|+.|.+++.+.+|.++||+ ++.+++++|+++.|+|+||+||| ++++
T Consensus 4 ~~e~~L~~~Ll~~Yd~~~R~~~P~~~~~~pv~V~~~l~l~~i~~v~E~~~~~~~~~t~~~~l~~~W~D~rL~wnp~~~~~ 83 (230)
T 4afh_A 4 LMAKRLRRELLNTYEQLGKSGLPFLDDIGKVDVKFGLSLQLLKSIEQRGMGFNSIGTFKAIVKLSWVDTILRWDPEPPFD 83 (230)
T ss_dssp HHHHHHHHHHHHHHHHHCSCSCSCSSBCCCEEEEEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEEECGGGCCCCCTTSC
T ss_pred hHHHHHHHHHHhhcChhhccCCCCCCCCCCEEEEEEEEHhHhhhhhhcccccCcEEEEEEEEeeEEECccccCCcccCCC
Confidence 5789999999999999999 9985 889999999999999999999 99999999999999999999999 6777
Q ss_pred EEecccccCcccccceeeecCCCCccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeecccc
Q psy5812 115 LTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYT 194 (365)
Q Consensus 115 i~~~~~~~~~IW~Pdi~~~N~~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~ 194 (365)
+....++.++||+||++++|++++..+.. ....++|++||+|.|.+++++++.|+| |||+|+|+|+|+||+|+
T Consensus 84 i~~i~l~~~~IW~PDi~l~N~~~~~~~~~--~~~~v~v~~~G~V~~~~~~~~~s~C~m-----PfD~Q~C~l~f~S~~y~ 156 (230)
T 4afh_A 84 FQKIEISPDEIWTPDIKLFNSVDLDMTLD--RTTQAIVFSNGTVLWIPPAVLKVLCVS-----QDDVDSCHFQFGSWVYS 156 (230)
T ss_dssp CSEEEECGGGSCCCCEEETTCSSSSCEEC--TTSCEEEETTSEEEECCEEEEEEEEEE-----ETTEEEEEEEEEESSCC
T ss_pred eeEEEeccCCEECCcEEEEeccccccccc--ccceEEEEcCCEEEEecCEEEEEECCC-----CCCcccCCEeecccccc
Confidence 66666678999999999999998876532 234578999999999999999999999 99999999999999999
Q ss_pred ceeEEEEeecC--CcccccccccCCceeeceeeeeeeeec--CCCceeeeEEEEEEEeecceeEEee
Q psy5812 195 VLDVVMYWKET--PVRGVEEAQLPQFTILGHETNDRKEKL--ATGTYQRLSLSFKLQRNIGYFVFQT 257 (365)
Q Consensus 195 ~~~v~l~~~~~--~~~~~~~~~~~~w~l~~~~~~~~~~~~--~~~~ys~l~~~~~l~R~~~~y~~~~ 257 (365)
.+++.+.|..+ .... +....+ |++.+.........+ ++++|+.+.|.|+++|++++|+.+-
T Consensus 157 ~~~v~l~~~~~~~~~d~-~~~~n~-W~l~~~~~~~~~~~y~cc~~~y~~i~f~~~irRrpl~~~~~~ 221 (230)
T 4afh_A 157 VDEVDIHFMDDKAEVLL-DFYQDS-LEILENSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYSR 221 (230)
T ss_dssp TTTEEEEEGGGCCSCBC-TTCCCC-CCEEEEEEEEEEECCTTCSSCEEEEEEEEEEECC--------
T ss_pred CceEEEEECCCCcccce-eeecCc-EEEEEEEEEEEEEecCCCCCCccEEEEEEEEEEeechhhccc
Confidence 99999999864 2444 566778 999999887766554 4678999999999999999998653
No 19
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=100.00 E-value=2.1e-41 Score=292.85 Aligned_cols=192 Identities=18% Similarity=0.286 Sum_probs=159.5
Q ss_pred CCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccccccCCCCeEEecccccCcccccceeeecCCC
Q psy5812 58 DIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRLAFSSEDEVLTLSGDFAEKIWVPDTFFANDKN 137 (365)
Q Consensus 58 d~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL~wn~~~~~i~~~~~~~~~IW~Pdi~~~N~~~ 137 (365)
-+++||+.+++|+.|.+++.+.+|.++||+++.+++++|+++.|+|+||+|||..+++....++.++||+||++++|+++
T Consensus 4 ~~~~RP~~~~~pv~V~~~l~l~~i~~vdE~~~~~t~~~~l~~~W~D~rL~w~~~~~~i~~~~~~~~~IW~PDi~l~N~~~ 83 (201)
T 3igq_A 4 MVSPPPPIADEPLTVNTGIYLIECYSLDDKAETFKVNAFLSLSWKDRRLAFDPVRSGVRVKTYEPEAIWIPEIRFVNVEN 83 (201)
T ss_dssp CCSCCCCBTTBCEEEEEEEEEEEEECCCTTSSEEEEEEEEEEEEECGGGCCCHHHHTCSCEECCGGGSCCCCEEESSBSS
T ss_pred ccccCCCCCCCCEEEEEEEEeeecccCcccCCEEEEEEEEeeEEECCccCCCCcCCCEeEecccccCcCccCEEEEcccc
Confidence 36789997789999999999999999999999999999999999999999999225566666779999999999999976
Q ss_pred CccccceecceeEEEeCCceEEEeceeeEEEEeeeeeccCCCcceeEEEEEeeccccceeEEEEeecCCcccccccccCC
Q psy5812 138 SFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWKETPVRGVEEAQLPQ 217 (365)
Q Consensus 138 ~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~~~~~~~~~~~~~~~~ 217 (365)
... ..+..++|++||+|.|.+++++++.|+||+++||||+|+|+|+|+||+|+.+++++.+..+.+...+...++|
T Consensus 84 ~~~----~~~~~v~v~~~G~V~~~~~~~~~s~C~mdl~~FPfD~Q~C~l~f~S~~y~~~~v~l~~~~~~~~~~~~~~~~e 159 (201)
T 3igq_A 84 ARD----ADVVDISVSPDGTVQYLERFSARVLSPLDGRRTESDSQTLHIYLIVRSVDTRNIVLAVDLEKVGKNDDVFLTG 159 (201)
T ss_dssp SCE----EEEEEEEECTTCEEEEEEEEEEEEECCCC------CEEEEEEEEEECCCSSCCEEEEECGGGCEESCSEEETT
T ss_pred ccc----ccceEEEEeCCCcEEEecceeEEEecCcccccCCCCccEeeEEEeccCCCceEEEEEecCCccccccCcccCC
Confidence 542 3467789999999999999999999999999999999999999999999999999999877776677889999
Q ss_pred ceeeceeeeeeeeec--CCCceeeeEEEEEEEeeccee
Q psy5812 218 FTILGHETNDRKEKL--ATGTYQRLSLSFKLQRNIGYF 253 (365)
Q Consensus 218 w~l~~~~~~~~~~~~--~~~~ys~l~~~~~l~R~~~~y 253 (365)
|++.+....+....| ++++|+.+.|.+.+||+.+.+
T Consensus 160 w~l~~~~~~~~~~~y~cc~~~y~~i~f~i~irR~~~~~ 197 (201)
T 3igq_A 160 WDIESFTAVVKPANFALEDRLESKLDYQLRISRQGGHH 197 (201)
T ss_dssp EEEEEEEEEEEC--------CCCEEEEEEEEEEC----
T ss_pred eEEEeeEEEEEEEEeCCCCCccCeEEEEEEEEECCCCC
Confidence 999999888766544 467899999999999998754
No 20
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=100.00 E-value=6.1e-40 Score=285.12 Aligned_cols=195 Identities=17% Similarity=0.289 Sum_probs=174.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCCceEEEEEEEEeeeccccccccceeeeeEEEeEEecccc-cccCCCCeEEecccccCc
Q psy5812 46 VTQTISQLLHGYDIRLRPNFGGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRL-AFSSEDEVLTLSGDFAEK 124 (365)
Q Consensus 46 ~~~L~~~Ll~~Yd~~~rP~~~~~p~~V~~~i~l~~i~~vde~~~~~~~~~~l~~~W~D~rL-~wn~~~~~i~~~~~~~~~ 124 (365)
.++|+++|+ ||+.+||+.+++|+.|.+++.+.+|.++||+++.+++++|+++.|+|+|| +|||.. ++....++.++
T Consensus 3 ~~~ll~~l~--~d~~~RP~~~~~p~~V~~~~~l~~i~~v~e~~~~~~~~~~~~~~W~D~rL~~w~~~~-~i~~~~~~~~~ 79 (203)
T 2bj0_A 3 RWTLLNQIT--GESDVIPLSNNTPLNVSLNFKLMNIVEADTEKDQVEVVLWTQASWKVPYYSSLLSSS-SLDQVSLPVSK 79 (203)
T ss_dssp CHHHHHHHH--HTTTSCCCCSSCCEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEECGGGGGGTTTS-SCSEEEEEGGG
T ss_pred HHHHHHHHh--cCCccCCCCCCCCEEEEEEEEEEeEeeecCCCCEEEEEEEEEeEEECcchhccCccC-CceEEEEchhh
Confidence 468899998 49999999888999999999999999999999999999999999999999 999943 44444445899
Q ss_pred ccccceeeecC-CCCccccceecceeEEEeCCceEEEeceeeEEEEeee-eeccCCCcceeEEEEEeeccccceeEEEEe
Q psy5812 125 IWVPDTFFAND-KNSFLHDVTERNKLVRLNGDGSITYGMRFTTTLACMM-DLHYYPLDNQNCTVEIESYGYTVLDVVMYW 202 (365)
Q Consensus 125 IW~Pdi~~~N~-~~~~~~~~~~~~~~~~v~~~G~V~~~~~~~~~~~C~~-d~~~fPfD~q~C~i~~~s~~~~~~~v~l~~ 202 (365)
||+||++++|+ +++.++.. ..++|++||+|.|.+++++++.|+| |+++ ||+|+|+|+|+||+|+.+++.+.|
T Consensus 80 iW~PDi~~~N~~~~~~~~~~----~~v~i~~~G~V~~~~~~~~~~~C~m~dl~~--fD~Q~C~l~f~S~~y~~~~v~l~~ 153 (203)
T 2bj0_A 80 MWTPDLSFYNAIAAPELLSA----DRVVVSKDGSVIYVPSQRVRFTCDLINVDT--EPGATCRIKVGSWTHDNKQFALIT 153 (203)
T ss_dssp SCCCCEEETTCSSCCEECSC----CEEEEETTSEEEECCEEEEEEECCCTTTTS--SSCEEEEEEEEESSCCTTTEEEEE
T ss_pred ccCCCccccccccccccccc----eEEEEeCCcEEEEecceEEEEEccccccCc--cccceeeEEEEcccccCcEEEEEe
Confidence 99999999999 88766543 5688999999999999999999999 9998 999999999999999999999999
Q ss_pred ecCC-cccccccccCCceeeceeeeeeeeecC--CCceeeeEEEEEEEee
Q psy5812 203 KETP-VRGVEEAQLPQFTILGHETNDRKEKLA--TGTYQRLSLSFKLQRN 249 (365)
Q Consensus 203 ~~~~-~~~~~~~~~~~w~l~~~~~~~~~~~~~--~~~ys~l~~~~~l~R~ 249 (365)
..++ ....+...++||++.+.........|. +++|+++.+.|+++|+
T Consensus 154 ~~~~~~~~~~~~~~~ew~l~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~ 203 (203)
T 2bj0_A 154 GEEGVVNIAEYFDSPKFDLLSATQSLNRKKYSCCENMYDDIEITFAFRKK 203 (203)
T ss_dssp CTTTTSCTTTTCCCSSEEEEEEEEEEEEEECTTCSSEEEEEEEEEEEEEC
T ss_pred cCCCccchhcceecCCEEEEEeEEEEEEEecCCCCCCeeEEEEEEEEEEC
Confidence 8766 666778889999999998877766664 6899999999999996
No 21
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.85 E-value=1.9e-23 Score=172.33 Aligned_cols=113 Identities=18% Similarity=0.300 Sum_probs=90.4
Q ss_pred cCCCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCC-cc
Q psy5812 232 LATGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YV 310 (365)
Q Consensus 232 ~~~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~-~~ 310 (365)
.++++|+++.+.+.+||+++||.+++++||++++++++++||+|+++ ++|+++|++++|++++++..+++.+|+++ ++
T Consensus 10 ~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~LLs~tvfl~~v~~~lP~tS~~v 88 (164)
T 2ksr_A 10 SVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDC-GEKMTLCISVLLALTVFLLLISKIVPPTSLDV 88 (164)
T ss_dssp ---------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCS-HHHHHHHHHHHHHHHHHHHHHHTTCCSSCTTH
T ss_pred CCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCC-CCeEEEeeehHHHHHHHHHHHHHHCCCCcccC
Confidence 46778999999999999999999999999999999999999999999 59999999999999999999999999998 79
Q ss_pred cchhhhhhHHHHHHHHHHHHhhhe-eeeeecccccc
Q psy5812 311 KAIDIYLVMCFVFVFAALLEYAAV-NYSYWADRAKK 345 (365)
Q Consensus 311 ~~i~~~~~~~~~~~~~~li~~~iv-~~~~~~~~~~~ 345 (365)
|++|+|+.+|++++++++++++++ +.+++++..++
T Consensus 89 PlI~~y~~~~m~~v~~sll~tv~Vl~~~~r~~~~~~ 124 (164)
T 2ksr_A 89 PLVGKYLMFTMVLVTFSIVTSVCVLNVHHRSPTTHT 124 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHTSSCCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCC
Confidence 999999999999999999999977 44555555444
No 22
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.81 E-value=3.3e-23 Score=166.36 Aligned_cols=102 Identities=18% Similarity=0.182 Sum_probs=96.4
Q ss_pred CCceeeeEEEEEEEeecceeEEeeehhhHHHhhheeeEEeeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCC-cccc
Q psy5812 234 TGTYQRLSLSFKLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YVKA 312 (365)
Q Consensus 234 ~~~ys~l~~~~~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~-~~~~ 312 (365)
.|.|+++.+.+.+||++.||.+++++|++++++++|++||+|+++ ++|++++++++|++++++..+++.+|+++ ++|+
T Consensus 33 ~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~ds-geRvslgit~lLs~tvfl~~v~~~lP~tS~~vPl 111 (140)
T 2lkg_A 33 AGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDS-GEKMTESKSVLKSLTEKLKKIVELIPSTSSAVPL 111 (140)
T ss_dssp HHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSS-SHHHHHHHHHHHHHHHHHHGGGGTCTTTGGGHHH
T ss_pred CCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCC-CCEEEEeeehHHHHHHHHHHHHHhCCCccccccH
Confidence 456799999999999999999999999999999999999999998 49999999999999999999999999998 7999
Q ss_pred hhhhhhHHHHHHHHHHHHhhheee
Q psy5812 313 IDIYLVMCFVFVFAALLEYAAVNY 336 (365)
Q Consensus 313 i~~~~~~~~~~~~~~li~~~iv~~ 336 (365)
+|+|+.+|++++++++++++++..
T Consensus 112 I~~y~~~~~~~v~~sll~tv~Vln 135 (140)
T 2lkg_A 112 IGKYMLFTKEFVESSIKITEEVIN 135 (140)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhee
Confidence 999999999999999999887643
No 23
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.78 E-value=6e-21 Score=153.25 Aligned_cols=101 Identities=19% Similarity=0.336 Sum_probs=91.1
Q ss_pred EEEeecceeEEeeehhhHHHhhheeeEEeeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCC-cccchhhhhhHHHHH
Q psy5812 245 KLQRNIGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YVKAIDIYLVMCFVF 323 (365)
Q Consensus 245 ~l~R~~~~y~~~~~lP~~li~~l~~~~f~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~-~~~~i~~~~~~~~~~ 323 (365)
++||++.||.+++++||++++++++++||+|++++ +|++++++++|++++++..+++.+|+++ ++|++|+|+.+|+++
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s~-eRv~lgit~lLs~tv~l~~~~~~lP~tS~~vpli~~y~~~~~~~ 80 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSECG-EKITLCISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIF 80 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCSTT-HHHHHHHHHHHHHHHHHHHHHHHCSCCSSSCCSTHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCCC-CeEEEEeeeHHHHHHHHHHHHHhCCCCcccchHHHHHHHHHHHH
Confidence 58999999999999999999999999999999985 9999999999999999999999999998 799999999999999
Q ss_pred HHHHHHHhhhe-eeeeeccccccC
Q psy5812 324 VFAALLEYAAV-NYSYWADRAKKK 346 (365)
Q Consensus 324 ~~~~li~~~iv-~~~~~~~~~~~~ 346 (365)
+++++++++++ +.++|.++.++.
T Consensus 81 v~~sl~~tv~V~~~~~r~~~~~~m 104 (137)
T 2lly_A 81 VTLSIVITVFVLNVHHRSPETHTG 104 (137)
T ss_dssp HHHHHHHHHHHHHCCSSCSSCCSS
T ss_pred HHHHhhhhhhhhhHHhcCCccCcc
Confidence 99999999976 555555555554
No 24
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.68 E-value=2.6e-19 Score=155.92 Aligned_cols=103 Identities=20% Similarity=0.388 Sum_probs=85.3
Q ss_pred cceeEEeeehhhHHHhhheeeEEeeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCC-cccchhhhhhHHHHHHHHHH
Q psy5812 250 IGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YVKAIDIYLVMCFVFVFAAL 328 (365)
Q Consensus 250 ~~~y~~~~~lP~~li~~l~~~~f~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~-~~~~i~~~~~~~~~~~~~~l 328 (365)
|.||.+++++||++++++++++||+|++++ +|++++++++|++++|+..+++.+|+++ ++|++|+|+.+|++++++++
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~sg-erv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSG-EKMTLSISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVISSI 79 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCCC-CeEeehHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999995 9999999999999999999999999998 79999999999999999999
Q ss_pred HHhhhe-eeeeeccccccCCCCCCCC
Q psy5812 329 LEYAAV-NYSYWADRAKKKPKAKEPT 353 (365)
Q Consensus 329 i~~~iv-~~~~~~~~~~~~~~~~~~~ 353 (365)
++++++ +++++.+..++.|+|.+..
T Consensus 80 ~~tv~vln~~~r~~~~~~mp~wvr~~ 105 (227)
T 1oed_A 80 IITVVVINTHHRSPSTHTMPQWVRKI 105 (227)
T ss_dssp HHHHHHHHHHHHC-------------
T ss_pred HHHHHHHhhhccCCCCCCcchHHHHH
Confidence 999887 6777788888899888753
No 25
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.67 E-value=4.3e-19 Score=156.75 Aligned_cols=103 Identities=21% Similarity=0.350 Sum_probs=85.2
Q ss_pred cceeEEeeehhhHHHhhheeeEEeeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCC-cccchhhhhhHHHHHHHHHH
Q psy5812 250 IGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YVKAIDIYLVMCFVFVFAAL 328 (365)
Q Consensus 250 ~~~y~~~~~lP~~li~~l~~~~f~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~-~~~~i~~~~~~~~~~~~~~l 328 (365)
+.||.+++++||++++++++++||+|++++ +|++++++++|++++|+..+++.+|+++ ++|++|+|+.+||+++++++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~dsg-erv~l~it~lLs~tvfl~~v~~~lP~tS~~vPli~~y~~~~m~~v~~sl 79 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDAG-EKMSLSISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILVAFSV 79 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCCC-CeEEehhhHHHHHHHHHHHHHHHCCCCcccCCcHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999995 9999999999999999999999999998 79999999999999999999
Q ss_pred HHhhhe-eeeeeccccccCCCCCCCC
Q psy5812 329 LEYAAV-NYSYWADRAKKKPKAKEPT 353 (365)
Q Consensus 329 i~~~iv-~~~~~~~~~~~~~~~~~~~ 353 (365)
++++++ +++++.+..++.|+|.+..
T Consensus 80 ~~tv~Vln~~~r~~~~~~mp~wvr~~ 105 (250)
T 1oed_B 80 ILSVVVLNLHHRSPNTHTMPNWIRQI 105 (250)
T ss_dssp HHHHHHHHHHHTC-------------
T ss_pred HHHhheeeeeccCCCCCCcchHHHHH
Confidence 998877 7777888888889888754
No 26
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.66 E-value=7.4e-19 Score=156.13 Aligned_cols=104 Identities=17% Similarity=0.292 Sum_probs=84.9
Q ss_pred cceeEEeeehhhHHHhhheeeEEeeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCC-cccchhhhhhHHHHHHHHHH
Q psy5812 250 IGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YVKAIDIYLVMCFVFVFAAL 328 (365)
Q Consensus 250 ~~~y~~~~~lP~~li~~l~~~~f~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~-~~~~i~~~~~~~~~~~~~~l 328 (365)
+.||.+++++||++++++++++||+|+++.++|++++++++|++++|+..+++.+|+++ ++|++|+|+.+||+++++++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~sl 80 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIV 80 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999994469999999999999999999999999998 79999999999999999999
Q ss_pred HHhhhe-eeeeeccccccCCCCCCCC
Q psy5812 329 LEYAAV-NYSYWADRAKKKPKAKEPT 353 (365)
Q Consensus 329 i~~~iv-~~~~~~~~~~~~~~~~~~~ 353 (365)
++++++ +++++.+..++.|+|.+..
T Consensus 81 ~~tv~vln~~~r~~~~~~mp~w~r~~ 106 (260)
T 1oed_E 81 MNCVIVLNVSLRTPNTHSLSEKIKHL 106 (260)
T ss_dssp HHHHHHHHHHHHC-------------
T ss_pred HHHhheeeeeccCCCCCCcchHHHHH
Confidence 988765 7777888888888888753
No 27
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.65 E-value=9.6e-19 Score=155.37 Aligned_cols=103 Identities=17% Similarity=0.329 Sum_probs=84.7
Q ss_pred cceeEEeeehhhHHHhhheeeEEeeeCCCCCccEEEehhHHHHHHHhhhhhhccCCCCC-cccchhhhhhHHHHHHHHHH
Q psy5812 250 IGYFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YVKAIDIYLVMCFVFVFAAL 328 (365)
Q Consensus 250 ~~~y~~~~~lP~~li~~l~~~~f~l~~~~~~~Ri~l~it~lL~~~~~~~~~~~~lP~~~-~~~~i~~~~~~~~~~~~~~l 328 (365)
+.||.+++++||++++++++++||+|++++ +|++++++++|++++|+..+++.+|+++ ++|++++|+.+||+++++++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~g-ekv~l~it~lLs~tvfl~~~~~~lP~tS~~vPli~~y~~~~m~~v~~s~ 79 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAESG-EKMSTAISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLVTGVI 79 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCTHHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCC-CeEeehHHHHHHHHHHHHHHHHHCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999975 9999999999999999999999999998 79999999999999999999
Q ss_pred HHhhhe-eeeeeccccccCCCCCCCC
Q psy5812 329 LEYAAV-NYSYWADRAKKKPKAKEPT 353 (365)
Q Consensus 329 i~~~iv-~~~~~~~~~~~~~~~~~~~ 353 (365)
++++++ +.+++.+..++.|+|.+..
T Consensus 80 ~~tv~vl~~~~r~~~~~~mp~w~r~~ 105 (260)
T 1oed_C 80 VNCGIVLNFHFRTPSTHVLSTRVKQI 105 (260)
T ss_dssp HHHHHHHHHHHHC-------------
T ss_pred HHHHheeeeeccCCCCCCccHHHHHH
Confidence 998877 6677777888888888754
No 28
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=99.30 E-value=2.2e-13 Score=95.78 Aligned_cols=65 Identities=63% Similarity=0.995 Sum_probs=58.0
Q ss_pred CccEEEehhHHHHHHHhhhhhhccCCCCCcccchhhhhhHHHHHHHHHHHHhhheeeeeeccccc
Q psy5812 280 SARVALGITTVLTMTTISTGVRSSLPRISYVKAIDIYLVMCFVFVFAALLEYAAVNYSYWADRAK 344 (365)
Q Consensus 280 ~~Ri~l~it~lL~~~~~~~~~~~~lP~~~~~~~i~~~~~~~~~~~~~~li~~~iv~~~~~~~~~~ 344 (365)
++|+++|++++|+++.+...+...+|+++|++++|+|+.+|++++|++++|+++++++.+++...
T Consensus 2 paRv~LGittvLtmtt~~~~~~~~lPkVSYikAiDvw~~~C~~FVF~aLlEya~V~y~~r~~~~~ 66 (76)
T 1vry_A 2 PARVGLGITTVLTLTTQSSGSRASLPKVSYVKAIDIWLAVCLLFVFSALLEYAAVNFVSRKKKKH 66 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTTCCCSHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred CceEEechHHHHHHHHHhcCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 58999999999999999999999999999999999999999999999999999999987665543
No 29
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=89.87 E-value=0.015 Score=32.28 Aligned_cols=27 Identities=74% Similarity=0.986 Sum_probs=24.1
Q ss_pred CccEEEehhHHHHHHHhhhhhhccCCC
Q psy5812 280 SARVALGITTVLTMTTISTGVRSSLPR 306 (365)
Q Consensus 280 ~~Ri~l~it~lL~~~~~~~~~~~~lP~ 306 (365)
++|+.+|++.+|+++.+....+..+|+
T Consensus 2 paRv~LGittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 2 PARVGLGITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp CHHHHHHHHHHHHHCCSSSSSSSSCCC
T ss_pred CceEEEcchhHHHHHHHHhhHhhhCCC
Confidence 589999999999999998888888885
Done!