RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5812
         (365 letters)



>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
           pond snail (Lymnaea stagnalis) [TaxId: 6523]}
          Length = 208

 Score =  108 bits (270), Expect = 1e-28
 Identities = 34/205 (16%), Positives = 72/205 (35%), Gaps = 12/205 (5%)

Query: 51  SQLLHGYDIRLRPNF----GGDPLYVGMDLTIASFDSISEVSMDYTITMYLNQYWKDDRL 106
           + +L+      RP+        P+ V + L   +   ++E++ +  +  +    W D  L
Sbjct: 5   ADILYNIRQTSRPDVIPTQRDRPVAVSVSLKFINILEVNEITNEVDVVFWQQTTWSDRTL 64

Query: 107 AFSSEDEVLTLSGDFAEKIWVPDTFFANDKNSFLHDVTERNKLVRLNGDGSITYGMRFTT 166
           A++S              +WVPD    N  +          +L R+  DG + Y      
Sbjct: 65  AWNSSHSP-DQVSVPISSLWVPDLAAYNAISKPEVL---TPQLARVVSDGEVLYMPSIRQ 120

Query: 167 TLACMMDLHYYPLDNQNCTVEIESYGYTVLDVVMYWK-ETPVRGVEEAQLPQFTILG--H 223
             +C +           C ++I S+ +   ++ +    E        +Q  +F IL    
Sbjct: 121 RFSCDVSGVDTE-SGATCRIKIGSWTHHSREISVDPTTENSDDSEYFSQYSRFEILDVTQ 179

Query: 224 ETNDRKEKLATGTYQRLSLSFKLQR 248
           + N          Y+ + +S   ++
Sbjct: 180 KKNSVTYSCCPEAYEDVEVSLNFRK 204


>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 95.3 bits (236), Expect = 3e-23
 Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 252 YFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YV 310
           +++     P +LI  L  + +++  +A   +  L I+ +L  T     +   +P  S  V
Sbjct: 3   FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLLAQTIFLFLIAQKVPETSLNV 62

Query: 311 KAIDIYLVMCFVFVFAALLEYAAVNYSYWADRAKKKPK 348
             I  YL+         ++    V              
Sbjct: 63  PLIGKYLIFVMFVSMLIVMNCVIVLNVSLRTPNTHSLS 100


>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score = 88.7 bits (219), Expect = 6e-21
 Identities = 20/89 (22%), Positives = 44/89 (49%), Gaps = 2/89 (2%)

Query: 252 YFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YV 310
           +++  T +P ILI +L+ + F++  +A   +++L I+ +L +T     +   +P  S  V
Sbjct: 3   FYIVYTIIPCILISILAILVFYLPPDA-GEKMSLSISALLAVTVFLLLLADKVPETSLSV 61

Query: 311 KAIDIYLVMCFVFVFAALLEYAAVNYSYW 339
             I  YL+   + V  +++    V   + 
Sbjct: 62  PIIIRYLMFIMILVAFSVILSVVVLNLHH 90


>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 227

 Score = 87.9 bits (217), Expect = 7e-21
 Identities = 19/88 (21%), Positives = 44/88 (50%), Gaps = 2/88 (2%)

Query: 252 YFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YV 310
           YFV    +P +L   L+ + F++  ++   ++ L I+ +L++T     +   +P  S  V
Sbjct: 3   YFVVNVIIPCLLFSFLTGLVFYLPTDS-GEKMTLSISVLLSLTVFLLVIVELIPSTSSAV 61

Query: 311 KAIDIYLVMCFVFVFAALLEYAAVNYSY 338
             I  Y++   +FV ++++    V  ++
Sbjct: 62  PLIGKYMLFTMIFVISSIIITVVVINTH 89


>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 87.9 bits (217), Expect = 1e-20
 Identities = 17/109 (15%), Positives = 40/109 (36%), Gaps = 2/109 (1%)

Query: 252 YFVFQTYLPSILIVMLSWVSFWINHEATSARVALGITTVLTMTTISTGVRSSLPRIS-YV 310
           ++V     P +LI  L+ ++F++  E+   +++  I+ +L            LP  +  V
Sbjct: 3   FYVINFITPCVLISFLASLAFYLPAES-GEKMSTAISVLLAQAVFLLLTSQRLPETALAV 61

Query: 311 KAIDIYLVMCFVFVFAALLEYAAVNYSYWADRAKKKPKAKEPTPLGNYI 359
             I  YL+     V   ++    V   ++   +      +        +
Sbjct: 62  PLIGKYLMFIMSLVTGVIVNCGIVLNFHFRTPSTHVLSTRVKQIFLEKL 110


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,337,143
Number of extensions: 60018
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 8
Length of query: 365
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 278
Effective length of database: 1,213,086
Effective search space: 337237908
Effective search space used: 337237908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)