BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5813
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 114/171 (66%), Gaps = 7/171 (4%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I R+LDF+++L+YD+H A+ V HHSPLF +ED F + D+ + + L+ GA
Sbjct: 173 ISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGQEDASSRFS---NADYAVSYMLRLGAPA 229
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
+KLV+GIPT+G+S+TL + +++ +GAP GPG G T+EKG LAYYEIC L+ +
Sbjct: 230 NKLVMGIPTFGKSFTLASSKTD-VGAPVSGPGIPGQFTKEKGILAYYEICDFLQG---AT 285
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
H PYA KGNQWV YDDQE K+KA+Y+ +++L G M W++D DD
Sbjct: 286 THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 164 bits (416), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 112/171 (65%), Gaps = 7/171 (4%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I R+LDF+++L+YD+H A+ V HHSPLF ED F + D+ + + L+ GA
Sbjct: 173 ISRHLDFISLLTYDFHGAWRQTVGHHSPLFAGNEDASSRFS---NADYAVSYMLRLGAPA 229
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
+KLV+GIPT+GRS+TL + +++ +GAP GPG G T+EKG LAYYEIC L +
Sbjct: 230 NKLVMGIPTFGRSFTLASSKTD-VGAPVSGPGVPGRFTKEKGILAYYEICDFLHG---AT 285
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
H PYA KGNQWV YDDQE K+KA+Y+ +++L G M W++D DD
Sbjct: 286 THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/171 (47%), Positives = 110/171 (64%), Gaps = 7/171 (4%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I R+LDF+++L+YD+H + V HHSPLF DG F + D+ + + L+ GA
Sbjct: 173 ISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFS---NADYAVSYMLRLGAPA 229
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
+KLV+GIPT+GRSYTL + S ++GAP GPG G T+EKG LAYYEIC L +
Sbjct: 230 NKLVMGIPTFGRSYTLAS-SSTRVGAPISGPGIPGQFTKEKGILAYYEICDFLHG---AT 285
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
H PYA KGNQWV YDDQE K+KA+Y+ +++L G M W++D DD
Sbjct: 286 THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 164 bits (414), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 112/171 (65%), Gaps = 7/171 (4%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I R+LDF+++L+YD+H A+ V HHSPLF ED F + D+ + + L+ GA
Sbjct: 173 ISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFS---NADYAVSYMLRLGAPA 229
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
+KLV+GIPT+GRS+TL + +++ +GAP GPG G T+EKG LAYYEIC L +
Sbjct: 230 NKLVMGIPTFGRSFTLASSKTD-VGAPVSGPGIPGRFTKEKGILAYYEICDFLHG---AT 285
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
H PYA KGNQWV YDDQE K+KA+Y+ +++L G M W++D DD
Sbjct: 286 THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 111/171 (64%), Gaps = 7/171 (4%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I R+LDF+++L+YD+H + V HHSPLF DG F + D+ + + L+ GA
Sbjct: 173 ISRHLDFISLLTYDFHGGWRGTVGHHSPLFRGNSDGSSRFS---NADYAVSYMLRLGAPA 229
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
+KLV+GIPT+GRSYTL + +++ +GAP GPG G T+EKG LAYYEIC L +
Sbjct: 230 NKLVMGIPTFGRSYTLASSKTD-VGAPISGPGIPGQFTKEKGTLAYYEICDFLHG---AT 285
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
H PYA KGNQWV YDDQE K+KA+Y+ +++L G M W++D DD
Sbjct: 286 THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 111/171 (64%), Gaps = 7/171 (4%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I R+LDF+++L+YD+H A+ V HHSPLF ED F + D+ + + L+ GA
Sbjct: 173 ISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRFS---NADYAVSYMLRLGAPA 229
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
+KLV+GIPT+GRSYTL + +++ +GAP GPG G T+ KG LAYYEIC L +
Sbjct: 230 NKLVMGIPTFGRSYTLASSKTD-VGAPISGPGIPGRFTKWKGILAYYEICDFLHG---AT 285
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
H PYA KGNQWV YDDQE K+KA+Y+ +++L G M W++D DD
Sbjct: 286 THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 111/171 (64%), Gaps = 7/171 (4%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I R+LDF+++L+YD+H A+ V HHSPLF D F + D+ + + L+ GA
Sbjct: 173 ISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFS---NADYAVSYMLRLGAPA 229
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
+KLV+GIPT+GRS+TL + +++ +GAP GPG G T+EKG LAYYEIC L +
Sbjct: 230 NKLVMGIPTFGRSFTLASSKTD-VGAPISGPGIPGRFTKEKGILAYYEICDFLHG---AT 285
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
H PYA KGNQWV YDDQE K+KA+Y+ +++L G M W++D DD
Sbjct: 286 THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/171 (47%), Positives = 111/171 (64%), Gaps = 7/171 (4%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I R+LDF+++L+YD+H A+ V HHSPLF DG F + D+ + + L+ GA
Sbjct: 173 ISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDGSSRFS---NADYAVSYMLRLGAPA 229
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
+KLV+GIPT+GRS+TL + +++ GAP GPG G T+EKG LAYYEIC L +
Sbjct: 230 NKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFLHG---AT 285
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
H PYA KGNQWV YDDQE K+KA+Y+ +++L G M W++D DD
Sbjct: 286 THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 159 bits (402), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/171 (46%), Positives = 110/171 (64%), Gaps = 7/171 (4%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I R+LDF+++L+YD+H A+ V HHSPLF D F + D+ + + L+ GA
Sbjct: 173 ISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNSDASSRFS---NADYAVSYMLRLGAPA 229
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
+KLV+GIPT+GRS+TL + +++ GAP GPG G T+EKG LAYYEIC L +
Sbjct: 230 NKLVMGIPTFGRSFTLASSKTDG-GAPISGPGIPGRFTKEKGILAYYEICDFLHG---AT 285
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
H PYA KGNQWV YDDQE K+KA+Y+ +++L G M W++D DD
Sbjct: 286 THRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 82/177 (46%), Positives = 113/177 (63%), Gaps = 9/177 (5%)
Query: 53 SYDIHR---YLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
SYDI + +LDF++I++YD+H A+ HHSPLF +ED + + + D+ + + L
Sbjct: 167 SYDIAKISQHLDFISIMTYDFHGAWRGTTGHHSPLFRGQEDASPDRFS--NTDYAVGYML 224
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLK 169
+ GA KLV+GIPT+GRS+TL + E+ +GAP GPG G T+E G LAYYEIC L+
Sbjct: 225 RLGAPASKLVMGIPTFGRSFTLASSETG-VGAPISGPGIPGRFTKEAGTLAYYEICDFLR 283
Query: 170 SDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ H PYA KGNQWVGYDDQE K K +Y+ D++L G M W++D DD
Sbjct: 284 G---ATVHRILGQQVPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDD 337
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 105/171 (61%), Gaps = 6/171 (3%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I + LDF+N+++YD+H ++E H+SPL+ +E E A L++D ++ +L+ G
Sbjct: 179 IAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQE--ESGAAASLNVDAAVQQWLQKGTPA 236
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
KL+LG+PTYGRS+TL + ++GAPA G G G T+E G LAYYE+CS + +
Sbjct: 237 SKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRI 296
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ PY F+ NQWVG+DD E K K Y+ + LGG M W++D DD
Sbjct: 297 QDQKV----PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 105/171 (61%), Gaps = 6/171 (3%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I + LDF+N+++YD+H ++E H+SPL+ +E E A L++D ++ +L+ G
Sbjct: 179 IAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQE--ESGAAASLNVDAAVQQWLEKGTPA 236
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
KL+LG+PTYGRS+TL + ++GAPA G G G T+E G LAYYE+CS + +
Sbjct: 237 SKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRI 296
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ PY F+ NQWVG+DD E K K Y+ + LGG M W++D DD
Sbjct: 297 QDQKV----PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 105/171 (61%), Gaps = 6/171 (3%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I + LDF+N+++YD+H ++E H+SPL+ +E + A L++D ++ +L+ G
Sbjct: 179 IAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQE--QSGAAASLNVDAAVQQWLQKGTPA 236
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
KL+LG+PTYGRS+TL + ++GAPA G G G T+E G LAYYE+CS + +
Sbjct: 237 SKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRI 296
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ PY F+ NQWVG+DD E K K Y+ + LGG M W++D DD
Sbjct: 297 QDQKV----PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 105/171 (61%), Gaps = 6/171 (3%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I + LDF+N+++YD+H ++E H+SPL+ +E E A L++D ++ +L+ G
Sbjct: 179 IAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQE--ESGAAASLNVDAAVQQWLQKGTPA 236
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
KL+LG+PTYGRS+TL + ++GAPA G G G T+E G LAYYE+CS + +
Sbjct: 237 SKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRI 296
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ PY F+ NQWVG+DD E K K Y+ + LGG M W++D DD
Sbjct: 297 QDQKV----PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/171 (40%), Positives = 105/171 (61%), Gaps = 6/171 (3%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
I + LDF+N+++YD+H ++E H+SPL+ +E + A L++D ++ +L+ G
Sbjct: 179 IAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQE--QSGAAASLNVDAAVQQWLQKGTPA 236
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
KL+LG+PTYGRS+TL + ++GAPA G G G T+E G LAYYE+CS + +
Sbjct: 237 SKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSWKGATKQRI 296
Query: 176 EHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ PY F+ NQWVG+DD E K K Y+ + LGG M W++D DD
Sbjct: 297 QDQKV----PYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 11/179 (6%)
Query: 53 SYDIHRY---LDFMNILSYDYHSAFE-PAVN-HHSPLFPLEEDGEYNFEAQLSIDHTIKH 107
SY + + LDF+N+LS+D+H ++E P + H+SPL +D + ++++ + +
Sbjct: 169 SYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQD--RGPSSYYNVEYAVGY 226
Query: 108 YLKSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSS 167
++ G +K+V+GIPTYG S+TL + E+ +GAPA GPG G T G+LAYYEIC
Sbjct: 227 WIHKGMPSEKVVMGIPTYGHSFTLASAETT-VGAPASGPGAAGPITESSGFLAYYEICQF 285
Query: 168 LKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
LK + PYA KGNQWVGYDD + + K +++ + LGG M WSID DD
Sbjct: 286 LKGAKITRLQDQQV---PYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDD 341
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Query: 2 KVKKKNTYLDFMNILSYDYHSAFE-PAVN-HHSPL 34
+V+K LDF+N+LS+D+H ++E P + H+SPL
Sbjct: 171 QVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPL 205
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 105/175 (60%), Gaps = 10/175 (5%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
+ +YLD++++++YD H ++E +SPL+ D N A L++D+ + ++ +GA
Sbjct: 178 QLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSN--AYLNVDYVMNYWKDNGAP 235
Query: 115 PDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLK---SD 171
+KL++G PTYG ++ L NP + IGAP G G G +E G AYYEIC+ LK +
Sbjct: 236 AEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGATQ 295
Query: 172 DWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
W P+ + PYA++GN WVGYD+ + KA+++ K GG M W+ID DD
Sbjct: 296 GWDA----PQEV-PYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDD 345
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/174 (38%), Positives = 105/174 (60%), Gaps = 10/174 (5%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
+ +YLD++++++YD H ++E +SPL+ D N A L++D+ + ++ +GA
Sbjct: 183 LSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSN--AYLNVDYVMNYWKDNGAPA 240
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLK---SDD 172
+KL++G PTYG ++ L NP + IGAP G G G +E G AYYEIC+ LK +
Sbjct: 241 EKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGATQG 300
Query: 173 WSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
W P+ + PYA++GN WVGYD+ + KA+++ K GG M W+ID DD
Sbjct: 301 WDA----PQEV-PYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDD 349
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 97/172 (56%), Gaps = 4/172 (2%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
++ + LD++ +++YD H + +SPL+ D A L++D I ++ GA
Sbjct: 178 ELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYD--IGKSADLNVDSIISYWKDHGAA 235
Query: 115 PDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWS 174
+KL++G P YG ++ L +P IGAP G G T E G LAYYE+C+ L ++ +
Sbjct: 236 SEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFL--NEGA 293
Query: 175 VEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
E + PYA++GN+WVGYD+ K KA+++ D LGG + W +D DD
Sbjct: 294 TEVWDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDD 345
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 56 IHRYLDFMNILSYDYHSA-FEPA-VNHHSPLF-PLEEDGEYNFEAQLSIDHTIKHYLKSG 112
+ R LD++N+++YD++ + P+ N H+ LF P+ +S I ++++G
Sbjct: 172 LARNLDWINLMAYDFYGPNWSPSQTNSHAQLFDPVN---------HVSGSDGINAWIQAG 222
Query: 113 ADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDD 172
KLVLGIP YG ++ L N + + APA G G + G + Y I +
Sbjct: 223 VPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAV--DDGSMTYNRIRDYIVESR 280
Query: 173 WSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
+ + N +G Y + G+ W+ YDD + ++K YV + L G W + D
Sbjct: 281 ATTVY-NATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 56 IHRYLDFMNILSYDYHSA-FEPA-VNHHSPLF-PLEEDGEYNFEAQLSIDHTIKHYLKSG 112
+ R LD++N+++YD++ + P+ N H+ LF P+ +S I ++++G
Sbjct: 172 LARNLDWINLMAYDFYGPNWSPSQTNSHAQLFDPVNH---------VSGSDGINAWIQAG 222
Query: 113 ADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDD 172
KLVLGIP YG ++ L N + + APA G G + G + Y I +
Sbjct: 223 VPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVGAV--DDGSMTYNRIRDYIVESR 280
Query: 173 WSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
+ + N +G Y + G+ W+ YDD + ++K YV + L G W + D
Sbjct: 281 ATTVY-NATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 52 VSYDI-HRYLDFMNILSYDYHSAFE-PAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
V+Y++ +D + ++SYD++ AF+ + H + L + + + + + L
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTAL----NAPAWKPDTAYTTVNGVNALL 405
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQI--GAPADGPGEQGDATREKGYLAYYEICSS 167
G P K+V+G YGR +T N N I A GP + T E G + Y +I S
Sbjct: 406 TQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVK---GTWENGIVDYRQIASQ 462
Query: 168 LKSDDWSVEHPNPRAMGPYAFK--GNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
S +W + + A PY FK + +DD + K KYV D++LGG+ W ID D
Sbjct: 463 FMSGEWQYTY-DATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDAD 521
Query: 226 D 226
+
Sbjct: 522 N 522
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 52 VSYDI-HRYLDFMNILSYDYHSAFE-PAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
V+Y++ +D + ++SYD++ AF+ + H + L + + + + + L
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTAL----NAPAWKPDTAYTTVNGVNALL 405
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQI--GAPADGPGEQGDATREKGYLAYYEICSS 167
G P K+V+G YGR +T N N I A GP + T E G + Y +I S
Sbjct: 406 TQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVK---GTWENGIVDYRQIASQ 462
Query: 168 LKSDDWSVEHPNPRAMGPYAFK--GNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
S +W + + A PY FK + +DD + K KYV D++LGG+ W ID D
Sbjct: 463 FMSGEWQYTY-DATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDAD 521
Query: 226 D 226
+
Sbjct: 522 N 522
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 52 VSYDI-HRYLDFMNILSYDYHSAFE-PAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
V+Y++ +D + ++SYD++ AF+ + H + L + + + + + L
Sbjct: 373 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTAL----NAPAWKPDTAYTTVNGVNALL 428
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQI--GAPADGPGEQGDATREKGYLAYYEICSS 167
G P K+V+G YGR +T N N I A GP + T E G + Y +I S
Sbjct: 429 AQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVK---GTWENGIVDYRQIASQ 485
Query: 168 LKSDDWSVEHPNPRAMGPYAFK--GNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
S +W + + A PY FK + +DD + K KYV D++LGG+ W ID D
Sbjct: 486 FMSGEWQYTY-DATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDAD 544
Query: 226 D 226
+
Sbjct: 545 N 545
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 52 VSYDI-HRYLDFMNILSYDYHSAFE-PAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
V+Y++ +D + ++SYD++ AF+ + H + L + + + + + L
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTAL----NAPAWKPDTAYTTVNGVNALL 405
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQI--GAPADGPGEQGDATREKGYLAYYEICSS 167
G P K+V+G YGR +T N N I A GP + T E G + Y +I S
Sbjct: 406 AQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVK---GTWENGIVDYRQIASQ 462
Query: 168 LKSDDWSVEHPNPRAMGPYAFK--GNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
S +W + + A PY FK + +DD + K KYV D++LGG+ W ID D
Sbjct: 463 FMSGEWQYTY-DATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDAD 521
Query: 226 D 226
+
Sbjct: 522 N 522
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 52 VSYDI-HRYLDFMNILSYDYHSAFE-PAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
V+Y++ +D + ++SYD++ AF+ + H + L + + + + + L
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTAL----NAPAWKPDTAYTTVNGVNALL 405
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQI--GAPADGPGEQGDATREKGYLAYYEICSS 167
G P K+V+G YGR +T N N I A GP + T E G + Y +I
Sbjct: 406 AQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVK---GTWENGIVDYRQIAGQ 462
Query: 168 LKSDDWSVEHPNPRAMGPYAFK--GNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
S +W + + A PY FK + +DD + K KYV D++LGG+ W ID D
Sbjct: 463 FMSGEWQYTY-DATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDAD 521
Query: 226 D 226
+
Sbjct: 522 N 522
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 52 VSYDI-HRYLDFMNILSYDYHSAFE-PAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
V+Y++ +D + ++SYD++ AF+ + H + L + + + + + L
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTAL----NAPAWKPDTAYTTVNGVNALL 405
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQI--GAPADGPGEQGDATREKGYLAYYEICSS 167
G P K+V+G YGR +T N N I A GP + T E G + Y +I
Sbjct: 406 AQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVK---GTWENGIVDYRQIAGQ 462
Query: 168 LKSDDWSVEHPNPRAMGPYAFK--GNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
S +W + + A PY FK + +DD + K KYV D++LGG+ W ID D
Sbjct: 463 FMSGEWQYTY-DATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDAD 521
Query: 226 D 226
+
Sbjct: 522 N 522
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 52 VSYDI-HRYLDFMNILSYDYHSAFE-PAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
V+Y++ +D + ++SYD++ AF+ + H + L + + + + + L
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTAL----NAPAWKPDTAYTTVNGVNALL 405
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQI--GAPADGPGEQGDATREKGYLAYYEICSS 167
G P K+V+G YGR +T N N I A GP + T E G + Y +I
Sbjct: 406 AQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVK---GTWENGIVDYRQIAGQ 462
Query: 168 LKSDDWSVEHPNPRAMGPYAFK--GNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
S +W + + A PY FK + +DD + K KYV D++LGG+ W ID D
Sbjct: 463 FMSGEWQYTY-DATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDAD 521
Query: 226 D 226
+
Sbjct: 522 N 522
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 52 VSYDI-HRYLDFMNILSYDYHSAFE-PAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
V+Y++ +D + ++SYD++ AF+ + H + L + + + + + L
Sbjct: 350 VAYNVAQNSMDHIFLMSYDFYGAFDLKNLGHQTAL----NAPAWKPDTAYTTVNGVNALL 405
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQI--GAPADGPGEQGDATREKGYLAYYEICSS 167
G P K+V+G YGR +T N N I A GP + T E G + Y +I
Sbjct: 406 AQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVK---GTWENGIVDYRQIAGQ 462
Query: 168 LKSDDWSVEHPNPRAMGPYAFK--GNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
S +W + + A PY FK + +DD + K KYV D++LGG+ W ID D
Sbjct: 463 FMSGEWQYTY-DATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDAD 521
Query: 226 D 226
+
Sbjct: 522 N 522
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
++ +YLDF N+++YD+ +++ H S +FP E S D +K Y+K+G
Sbjct: 191 EMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPE---STPFSSDKAVKDYIKAGVP 247
Query: 115 PDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWS 174
+K+VLG+P YGR++ ++ IG +G G + E G Y ++
Sbjct: 248 ANKIVLGMPLYGRAFA----STDGIGTSFNG---VGGGSWENGVWDYKDMPQQGAQ---V 297
Query: 175 VEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
E + A Y + YD +IA KA+Y+ +GG M+W +D
Sbjct: 298 TELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 85/181 (46%), Gaps = 14/181 (7%)
Query: 52 VSYDI-HRYLDFMNILSYDYHSAFE-PAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
V+Y++ +D + ++S+D++ AF+ + H + L + + + + + L
Sbjct: 350 VAYNVAQNSMDHIFLMSFDFYGAFDLKNLGHQTAL----NAPAWKPDTAYTTVNGVNALL 405
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQI--GAPADGPGEQGDATREKGYLAYYEICSS 167
G P K+V+G YGR +T N N I A GP + T E G + Y +I
Sbjct: 406 AQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVK---GTWENGIVDYRQIAGQ 462
Query: 168 LKSDDWSVEHPNPRAMGPYAFK--GNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
S +W + + A PY FK + +DD + K KYV D++LGG+ W ID D
Sbjct: 463 FMSGEWQYTY-DATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDAD 521
Query: 226 D 226
+
Sbjct: 522 N 522
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
++ +YLDF N+++YD+ +++ H S +FP E S D +K Y+K+G
Sbjct: 191 EMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPE---STPFSSDKAVKDYIKAGVP 247
Query: 115 PDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWS 174
+K+VLG+P YGR++ ++ IG +G G + E G Y ++
Sbjct: 248 ANKIVLGMPLYGRAFA----STDGIGTSFNG---VGGGSWENGVWDYKDMPQQGAQ---V 297
Query: 175 VEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
E + A Y + YD +IA KA+Y+ +GG M+W +D
Sbjct: 298 TELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 13/171 (7%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
++ +YLDF N+++YD+ +++ H S +FP E S D +K Y+K+G
Sbjct: 191 EMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPE---STPFSSDKAVKDYIKAGVP 247
Query: 115 PDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWS 174
+K+VLG+P YGR++ ++ IG +G G + E G Y ++
Sbjct: 248 ANKIVLGMPLYGRAFA----STDGIGTSFNG---VGGGSWENGVWDYKDMPQQGAQ---V 297
Query: 175 VEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
E + A Y + YD +IA KA+Y+ +GG M+W +D
Sbjct: 298 TELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 71/168 (42%), Gaps = 11/168 (6%)
Query: 58 RYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDK 117
+ LDF +I YD H A+ P + H + + S D +K YL +G DP +
Sbjct: 252 KSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPADPRAPSKKFSADKAVKKYLAAGIDPKQ 311
Query: 118 LVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEH 177
L LG+ YGR +T S A PG A + Y+ +L +D H
Sbjct: 312 LGLGLAAYGRGWTGAKNVSPWGPATDGAPGTYETANED------YDKLKTLGTD-----H 360
Query: 178 PNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
+ + + G QW YD+ K K Y+ + LGG M+W + D
Sbjct: 361 YDAATGSAWRYDGTQWWSYDNIATTKQKTDYIVSKGLGGGMWWELSGD 408
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 84/181 (46%), Gaps = 14/181 (7%)
Query: 52 VSYDI-HRYLDFMNILSYDYHSAFE-PAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
V+Y++ +D + ++SY ++ AF+ + H + L + + + + + L
Sbjct: 350 VAYNVAQNSMDHIFLMSYAFYGAFDLKNLGHQTAL----NAPAWKPDTAYTTVNGVNALL 405
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQI--GAPADGPGEQGDATREKGYLAYYEICSS 167
G P K+V+G YGR +T N N I A GP + T E G + Y +I
Sbjct: 406 AQGVKPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATGPVK---GTWENGIVDYRQIAGQ 462
Query: 168 LKSDDWSVEHPNPRAMGPYAFK--GNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
S +W + + A PY FK + +DD + K KYV D++LGG+ W ID D
Sbjct: 463 FMSGEWQYTY-DATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDAD 521
Query: 226 D 226
+
Sbjct: 522 N 522
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 55/198 (27%), Positives = 93/198 (46%), Gaps = 34/198 (17%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVN-----HHSPLFPLEEDGEYNFEAQLSIDHTIKHYLK 110
++ +DF+N+ ++D+ PA N + +P++ DG + A L+ D ++++L
Sbjct: 210 LNGLVDFVNLATFDF---LTPARNPEEADYSAPIY--HPDGSKDRLAHLNADFQVEYWLS 264
Query: 111 SGADPDKLVLGIPTYGRSYTLFNPESNQIGAPA----DGPGEQGDATREKGYLAYYEICS 166
G +K+ LG+ TYG ++ L +S G P GP +G +++ G L+Y EIC
Sbjct: 265 QGFPSNKINLGVATYGNAWKL-TKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSYAEICG 323
Query: 167 SL-----------KSDDWSVEHPNPRAMGPYAFK-------GNQWVGYDDQEIAKDKAKY 208
L +S V P R G A++ WV YDD + A +KA Y
Sbjct: 324 KLSNPQNQFLKGNESPLRRVSDPTKR-FGGIAYRPVDGQITEGIWVSYDDPDSASNKAAY 382
Query: 209 VNDQKLGGIMFWSIDNDD 226
+ LGG+ + + DD
Sbjct: 383 ARVKNLGGVALFDLSYDD 400
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 88/203 (43%), Gaps = 8/203 (3%)
Query: 27 AVNHHSPLFPLEEDGEYNFEAQLSIVSYDIHRYLDFMNILSYDYHSAFEPAVNHHSPLF- 85
AV+ L + + A + I +D++NI++YD++ A++ H++PL
Sbjct: 208 AVDGKKYLLTIASGASATYAANTELAK--IAAIVDWINIMTYDFNGAWQKISAHNAPLNY 265
Query: 86 -PLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPAD 144
P ++ + +L +G KLVLG+P YGR + N
Sbjct: 266 DPAASAAGVPDANTFNVAAGAQGHLDAGVPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCT 325
Query: 145 GPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFKGN--QWVGYDDQEIA 202
G G T E G +Y++ ++ + + + N A PY + + +++ YDD E
Sbjct: 326 GGSSVG--TWEAGSFDFYDLEANYINKNGYTRYWNDTAKVPYLYNASNKRFISYDDAESV 383
Query: 203 KDKAKYVNDQKLGGIMFWSIDND 225
K Y+ + LGG MFW + D
Sbjct: 384 GYKTAYIKSKGLGGAMFWELSGD 406
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 25/177 (14%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
D+ + LDF N+++YDY +F H + ++ D + + Y G
Sbjct: 232 DMDQQLDFWNLMAYDYAGSFSSLSGHQANVY---NDTSNPLSTPFNTQTALDLYRAGGVP 288
Query: 115 PDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGE----QGDATREKGYLAYYEICSSLKS 170
+K+VLG+P YGRS+ A DGPG+ G + E G Y + +
Sbjct: 289 ANKIVLGMPLYGRSF-----------ANTDGPGKPYNGVGQGSWENGVWDYKALPQA--- 334
Query: 171 DDWSVEHPNPRAMGPYAFKGNQ--WVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
+ EH P M Y++ + YD+ ++A K+ Y+ LGG M+W +D
Sbjct: 335 --GATEHVLPDIMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 389
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 25/177 (14%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
D+ + LDF N+++YDY +F H + ++ D + + Y G
Sbjct: 194 DMDQQLDFWNLMAYDYAGSFSSLSGHQANVY---NDTSNPLSTPFNTQTALDLYRAGGVP 250
Query: 115 PDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGE----QGDATREKGYLAYYEICSSLKS 170
+K+VLG+P YGRS+ A DGPG+ G + E G Y + +
Sbjct: 251 ANKIVLGMPLYGRSF-----------ANTDGPGKPYNGVGQGSWENGVWDYKALPQAG-- 297
Query: 171 DDWSVEHPNPRAMGPYAFKGNQ--WVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
+ EH P M Y++ + YD+ ++A K+ Y+ LGG M+W +D
Sbjct: 298 ---ATEHVLPDIMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 351
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 82/199 (41%), Gaps = 30/199 (15%)
Query: 29 NHHSPLFPLEEDGEYNFEAQLSIVSYDIHRYLDFMNILSYDYHS-AFEPAVNHHSPLFPL 87
N++S L+P+ + LD++N+++YD++ + + LF
Sbjct: 162 NYYSVLYPVSA----------------VASSLDWVNLMAYDFYGPGWSRVTGPPAALFDP 205
Query: 88 EEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPG 147
G S D + ++++G K VLG P YG ++ L N S+ AP G
Sbjct: 206 SNAGP-------SGDAGTRSWIQAGLPAKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAA 258
Query: 148 EQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAK 207
D + G + + + D+ + N +G Y + G W+GYDD + K +
Sbjct: 259 ISPDGSIGYGQIRKFIV------DNGATTVYNSTVVGDYCYAGTNWIGYDDNQSIVTKVR 312
Query: 208 YVNDQKLGGIMFWSIDNDD 226
Y + L G W + DD
Sbjct: 313 YAKQRGLLGYFSWHVGADD 331
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 51/238 (21%)
Query: 40 DGEYNFEAQLSIV----SYDIHRY----------LDFMNILSYDYHSAFEPAVNHHSPLF 85
DG QL+I ++ + RY LD++N+++YD +E NH + LF
Sbjct: 172 DGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALF 231
Query: 86 P-----------LEEDGEYNFEA---------QLSIDHTIK-HYLKSGADPDKLVLGIPT 124
E + +++E L++D ++ H + G K+V+G+P
Sbjct: 232 GDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPF 291
Query: 125 YGRSYTLFNPESNQIGAPADGPGEQ------------GDATREKG-YLAYYEICSSLKSD 171
YGR++ + + + PGE + R+K +A Y +
Sbjct: 292 YGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQG 351
Query: 172 DWSVEHP-NPRAMGPYAF--KGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
++ + N + PY + + +V YDD E K KAKY+ Q+LGG+MFW + D+
Sbjct: 352 NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 51/238 (21%)
Query: 40 DGEYNFEAQLSIV----SYDIHRY----------LDFMNILSYDYHSAFEPAVNHHSPLF 85
DG QL+I ++ + RY LD++N+++YD +E NH + LF
Sbjct: 172 DGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALF 231
Query: 86 P-----------LEEDGEYNFEA---------QLSIDHTIK-HYLKSGADPDKLVLGIPT 124
E + +++E L++D ++ H + G K+V+G+P
Sbjct: 232 GDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPF 291
Query: 125 YGRSYTLFNPESNQIGAPADGPGEQ------------GDATREKG-YLAYYEICSSLKSD 171
YGR++ + + + PGE + R+K +A Y +
Sbjct: 292 YGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQG 351
Query: 172 DWSVEHP-NPRAMGPYAF--KGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
++ + N + PY + + +V YDD E K KAKY+ Q+LGG+MFW + D+
Sbjct: 352 NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 51/238 (21%)
Query: 40 DGEYNFEAQLSIV----SYDIHRY----------LDFMNILSYDYHSAFEPAVNHHSPLF 85
DG QL+I ++ + RY LD++N+++YD +E NH + LF
Sbjct: 172 DGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALF 231
Query: 86 P-----------LEEDGEYNFEA---------QLSIDHTIK-HYLKSGADPDKLVLGIPT 124
E + +++E L++D ++ H + G K+V+G+P
Sbjct: 232 GDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPF 291
Query: 125 YGRSYTLFNPESNQIGAPADGPGEQ------------GDATREKG-YLAYYEICSSLKSD 171
YGR++ + + + PGE + R+K +A Y +
Sbjct: 292 YGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQG 351
Query: 172 DWSVEHP-NPRAMGPYAF--KGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
++ + N + PY + + +V YDD E K KAKY+ Q+LGG+MFW + D+
Sbjct: 352 NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 51/238 (21%)
Query: 40 DGEYNFEAQLSIV----SYDIHRY----------LDFMNILSYDYHSAFEPAVNHHSPLF 85
DG QL+I ++ + RY LD++N+++YD +E NH + LF
Sbjct: 172 DGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALF 231
Query: 86 P-----------LEEDGEYNFEA---------QLSIDHTIK-HYLKSGADPDKLVLGIPT 124
E + +++E L++D ++ H + G K+V+G+P
Sbjct: 232 GDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPF 291
Query: 125 YGRSYTLFNPESNQIGAPADGPGEQ------------GDATREKG-YLAYYEICSSLKSD 171
YGR++ + + + PGE + R+K +A Y +
Sbjct: 292 YGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQG 351
Query: 172 DWSVEHP-NPRAMGPYAF--KGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
++ + N + PY + + +V YDD E K KAKY+ Q+LGG+MFW + D+
Sbjct: 352 NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 51/238 (21%)
Query: 40 DGEYNFEAQLSIV----SYDIHRY----------LDFMNILSYDYHSAFEPAVNHHSPLF 85
DG QL+I ++ + RY LD++N+++YD +E NH + LF
Sbjct: 172 DGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALF 231
Query: 86 P-----------LEEDGEYNFEA---------QLSIDHTIK-HYLKSGADPDKLVLGIPT 124
E + +++E L++D ++ H + G K+V+G+P
Sbjct: 232 GDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPF 291
Query: 125 YGRSYTLFNPESNQIGAPADGPGEQ------------GDATREKG-YLAYYEICSSLKSD 171
YGR++ + + + PGE + R+K +A Y +
Sbjct: 292 YGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQG 351
Query: 172 DWSVEHP-NPRAMGPYAF--KGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
++ + N + PY + + +V YDD E K KAKY+ Q+LGG+MFW + D+
Sbjct: 352 NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 51/238 (21%)
Query: 40 DGEYNFEAQLSIV----SYDIHRY----------LDFMNILSYDYHSAFEPAVNHHSPLF 85
DG QL+I ++ + RY LD++N+++YD +E NH + LF
Sbjct: 172 DGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALF 231
Query: 86 P-----------LEEDGEYNFEA---------QLSIDHTIK-HYLKSGADPDKLVLGIPT 124
E + +++E L++D ++ H + G K+V+G+P
Sbjct: 232 GDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPF 291
Query: 125 YGRSYTLFNPESNQIGAPADGPGEQ------------GDATREKG-YLAYYEICSSLKSD 171
YGR++ + + + PGE + R+K +A Y +
Sbjct: 292 YGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQG 351
Query: 172 DWSVEHP-NPRAMGPYAF--KGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
++ + N + PY + + +V YDD E K KAKY+ Q+LGG+MFW + D+
Sbjct: 352 NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 51/238 (21%)
Query: 40 DGEYNFEAQLSIV----SYDIHRY----------LDFMNILSYDYHSAFEPAVNHHSPLF 85
DG QL+I ++ + RY LD++N+++YD +E NH + LF
Sbjct: 171 DGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYDLAGPWEKVTNHQAALF 230
Query: 86 P-----------LEEDGEYNFEA---------QLSIDHTIK-HYLKSGADPDKLVLGIPT 124
E + +++E L++D ++ H + G K+V+G+P
Sbjct: 231 GDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQHLMMEGVPSAKIVMGVPF 290
Query: 125 YGRSYTLFNPESNQIGAPADGPGEQ------------GDATREKG-YLAYYEICSSLKSD 171
YGR++ + + + PGE + R+K +A Y +
Sbjct: 291 YGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVRDKDPRIASYRQLEQMLQG 350
Query: 172 DWSVEHP-NPRAMGPYAF--KGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
++ + N + PY + + +V YDD E K KAKY+ Q+LGG+MFW + D+
Sbjct: 351 NYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIKQQQLGGVMFWHLGQDN 408
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 23/171 (13%)
Query: 60 LDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYN-FEAQLSIDHTIKHYLKSGADPDKL 118
LD +N+++YDY +++ H + L+P + F + ++D Y+ +G K+
Sbjct: 214 LDNINLMAYDYAGSWDSVSGHQTNLYPSTSNPSSTPFSTKAAVDA----YIAAGVPASKI 269
Query: 119 VLGIPTYGRSYTLFNPESNQIGAPADGPGEQ----GDATREKGYLAYYEICSSLKSDDWS 174
+LG+P YGR++ +G DGPG+ G+ + E G Y + K+
Sbjct: 270 ILGMPIYGRAF---------VG--TDGPGKPYSTIGEGSWESGIWDYKVLP---KAGATV 315
Query: 175 VEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
+ A Y + YD ++ + K Y LGG MFW D
Sbjct: 316 ITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 27/199 (13%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFP-------------LEEDGEYNFEAQLSI 101
D +Y+D++ ++YD++ + H + L+ ++E+GE +
Sbjct: 357 DAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTA 416
Query: 102 DHTIKHYLKSGADPDKLVLGIPTYGRSY------TLFNPESNQIG-APADGPGEQGDATR 154
D+ I+ L G +KLVLG YGR + TL +P G A G
Sbjct: 417 DNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVW 476
Query: 155 EKGYLAYYEICS-SLKSDDWSVE----HPNPRAMGPYAF--KGNQWVGYDDQEIAKDKAK 207
E G + Y I S L +++ + + +A P+ + + + +DD K
Sbjct: 477 EDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGN 536
Query: 208 YVNDQKLGGIMFWSIDNDD 226
Y L G+ W ID D+
Sbjct: 537 YAKSLGLAGLFSWEIDADN 555
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 27/199 (13%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFP-------------LEEDGEYNFEAQLSI 101
D +Y+D++ ++YD++ + H + L+ ++E+GE +
Sbjct: 357 DAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTA 416
Query: 102 DHTIKHYLKSGADPDKLVLGIPTYGRSY------TLFNPESNQIG-APADGPGEQGDATR 154
D+ I+ L G +KLVLG YGR + TL +P G A G
Sbjct: 417 DNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVW 476
Query: 155 EKGYLAYYEICS-SLKSDDWSVE----HPNPRAMGPYAF--KGNQWVGYDDQEIAKDKAK 207
E G + Y I S L +++ + + +A P+ + + + +DD K
Sbjct: 477 EDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGN 536
Query: 208 YVNDQKLGGIMFWSIDNDD 226
Y L G+ W ID D+
Sbjct: 537 YAKSLGLAGLFSWEIDADN 555
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 80/199 (40%), Gaps = 27/199 (13%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFP-------------LEEDGEYNFEAQLSI 101
D +Y+D++ ++YD++ + H + L+ ++E+GE +
Sbjct: 357 DAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTA 416
Query: 102 DHTIKHYLKSGADPDKLVLGIPTYGRSY------TLFNPESNQIG-APADGPGEQGDATR 154
D+ I+ L G +KLVLG YGR + TL +P G A G
Sbjct: 417 DNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVW 476
Query: 155 EKGYLAYYEICS-SLKSDDWSVE----HPNPRAMGPYAF--KGNQWVGYDDQEIAKDKAK 207
E G + Y I S L +++ + + +A P+ + + + +DD K
Sbjct: 477 EDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGN 536
Query: 208 YVNDQKLGGIMFWSIDNDD 226
Y L G+ W ID D+
Sbjct: 537 YAKSLGLAGLFSWEIDADN 555
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 63 MNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL-KSGADPDKLVLG 121
+N+++YD+ + + ++HH+ ++ D ++ SID + H + + DP + +G
Sbjct: 352 INLMTYDFFTLGDGKLSHHTNIYRDPSD----VYSKYSIDDAVTHLIDEKKVDPKAIFIG 407
Query: 122 IPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYE------ICSSLK------ 169
Y R+ + I + G DA + G Y IC +
Sbjct: 408 YAGYTRNAKNATI-TTSIPSEEALKGTYTDANQTLGSFEYSVLEWTDIICHYMDFEKGEG 466
Query: 170 SDDWSVEHPN-PRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ + + H +A Y+ ++ D +DK +YV D+ LGG+ WS D D+
Sbjct: 467 RNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 524
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 75/178 (42%), Gaps = 19/178 (10%)
Query: 63 MNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL-KSGADPDKLVLG 121
+N+++YD+ + + ++HH+ ++ D ++ SID + H + + DP + +G
Sbjct: 324 INLMTYDFFTLGDGKLSHHTNIYRDPSD----VYSKYSIDDAVTHLIDEKKVDPKAIFIG 379
Query: 122 IPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYE------ICSSLK------ 169
Y R+ + I + G DA + G Y IC +
Sbjct: 380 YAGYTRNAKNATI-TTSIPSEEALKGTYTDANQTLGSFEYSVLEWTDIICHYMDFEKGEG 438
Query: 170 SDDWSVEHPN-PRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ + + H +A Y+ ++ D +DK +YV D+ LGG+ WS D D+
Sbjct: 439 RNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDN 496
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 60 LDFMNILSYDYH-SAFEPAVNHHSPLFPLEEDGE---YNFEAQLSIDHTIKHYLKSGADP 115
LD + ++SYD+ + + + HH+ L+ ++ GE ++ A+ +ID+ + + G
Sbjct: 329 LDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYL---HNELGIPM 385
Query: 116 DKLVLGIPTYGRSYTLFNPESNQ--IGAPADGPGEQGDAT---REKGYLAYYEICSSLKS 170
+ + LG YGRS + + Q PA G E G K Y+ S K+
Sbjct: 386 EXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVKNYMDAEHSLSMGKN 445
Query: 171 DDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
+ N A ++ ++ D K K +Y KLGG+ WS D D
Sbjct: 446 GFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 75/175 (42%), Gaps = 12/175 (6%)
Query: 60 LDFMNILSYDYH-SAFEPAVNHHSPLFPLEEDGE---YNFEAQLSIDHTIKHYLKSGADP 115
LD + ++SYD+ + + + HH+ L+ ++ GE ++ A+ +ID+ + + G
Sbjct: 329 LDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYL---HNELGIPM 385
Query: 116 DKLVLGIPTYGRSYTLFNPESNQ--IGAPADGPGEQGDAT---REKGYLAYYEICSSLKS 170
+ + LG YGRS + + Q PA G E G K Y+ S K+
Sbjct: 386 EXIHLGYANYGRSAVGGDLTTRQYTXNGPALGTMENGAPEFFDIVKNYMDAEHSLSMGKN 445
Query: 171 DDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
+ N A ++ ++ D K K +Y KLGG+ WS D D
Sbjct: 446 GFVLMTDTNADADFLFSEAKGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 60 LDFMNILSYDYH-SAFEPAVNHHSPLFPLEEDGE---YNFEAQLSIDHTIKHYLKSGADP 115
LD + ++SYD+ + + + HH+ L+ ++ GE ++ A+ +ID+ + + G
Sbjct: 329 LDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYL---HNELGIPM 385
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
+K+ LG YGRS + + Q +GP T E G +++I + + S+
Sbjct: 386 EKIHLGYANYGRSAVGGDLTTRQY--TXNGPAL---GTMENGAPEFFDIVXNYMDAEHSL 440
Query: 176 EH----------PNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
N A ++ ++ D K +Y KLGG+ WS D D
Sbjct: 441 SMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVXQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 77/180 (42%), Gaps = 22/180 (12%)
Query: 60 LDFMNILSYDYH-SAFEPAVNHHSPLFPLEEDGE---YNFEAQLSIDHTIKHYLKSGADP 115
LD + ++SYD+ + + + HH+ L+ ++ GE ++ A+ +ID+ + + G
Sbjct: 329 LDNIYLMSYDFFGTIWADYIGHHTNLYSPKDPGEQELFDLSAEAAIDYL---HNELGIPM 385
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
+ + LG YGRS + + Q +GP T E G +++I + + S+
Sbjct: 386 EXIHLGYANYGRSAVGGDLTTRQY--TXNGPAL---GTMENGAPEFFDIVXNYMDAEHSL 440
Query: 176 EH----------PNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
N A ++ ++ D K K +Y KLGG+ WS D D
Sbjct: 441 SMGKNGFVLMTDTNADADFLFSEAXGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 60/151 (39%), Gaps = 24/151 (15%)
Query: 100 SIDHTIKHYLKSGADPDKLVLGIPTYGR----------SYTLFNPESNQIGAPADGP--- 146
S D + +YL +G P + LGI YGR +T + ++N + P GP
Sbjct: 254 SADFVVNNYLAAGLKPSQXNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQI 313
Query: 147 ---GEQGDATREKGYLAYYEICSSLKSDDWS--VEHPNPRAMGPY----AFKGNQW--VG 195
G + Y+ Y +I L +D EH + A P+ + +G +
Sbjct: 314 ALFASLGYDLSKDTYVKYNDIVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFALS 373
Query: 196 YDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
Y++ KA Y+ + L G FW DD
Sbjct: 374 YENPRSVAIKADYIKAKGLAGAXFWEYGADD 404
>pdb|3LHI|A Chain A, Crystal Structure Of Putative 6-
Phosphogluconolactonase(Yp_207848.1) From Neisseria
Gonorrhoeae Fa 1090 At 1.33 A Resolution
Length = 232
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 85 FPLEEDGEYNFEAQ--LSIDHTIKHYLKSGADPDKLVLGIPTYGRSYTLFNPESNQIGAP 142
P EDG+ E +D+ +KHY + PD L+LG G + ++F P++ Q
Sbjct: 100 IPXVEDGKTETELHPDAVVDYALKHYKQ----PDVLILGXGNDGHTASIF-PKAPQFQTA 154
Query: 143 ADG 145
DG
Sbjct: 155 IDG 157
>pdb|1VJU|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|1VJU|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|A Chain A, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|2QT8|B Chain B, Coproporphyrinogen Iii Oxidase From Leishmania Major
pdb|3DWS|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWS|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 54 YDIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYN-------FEAQLSIDHTIK 106
+ + +F+ + Y A+ P VN E+ E+ E L ID K
Sbjct: 202 WPFEKCFEFVQAVGKGYXDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNLVIDRGTK 261
Query: 107 HYLKSGADPDKLVLGIPTYGRSYTLFNPE 135
L+SG + +++ +P R + PE
Sbjct: 262 FGLQSGGRTESILISLPPRARWGYNWQPE 290
>pdb|3DWR|A Chain A, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
pdb|3DWR|B Chain B, Leishmania Major Coproporphyrinogen Iii Oxidase With Bound
Ligand
Length = 309
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 54 YDIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYN-------FEAQLSIDHTIK 106
+ + +F+ + Y A+ P VN E+ E+ E L ID K
Sbjct: 202 WPFEKCFEFVQAVGKGYMDAYIPIVNRRKNTPYTEQQVEFQEFRRGRYAEFNLVIDRGTK 261
Query: 107 HYLKSGADPDKLVLGIPTYGRSYTLFNPE 135
L+SG + +++ +P R + PE
Sbjct: 262 FGLQSGGRTESILISLPPRARWGYNWQPE 290
>pdb|2JOJ|A Chain A, Nmr Solution Structure Of N-Terminal Domain Of Euplotes
Octocarinatus Centrin
Length = 77
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 153 TREKGYLAYYEICSSLKSDDWSVEHPNP-RAMGPYAFKGNQWVGYDD 198
T + G + Y+E+ ++++ + V+ P M Y +GN ++G+DD
Sbjct: 18 TNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDD 64
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 109 LKSGADPDKLVLGIPTYGRSYTLFNPESNQIGA 141
LKSGA P+ +V+G T ++ TL Q+GA
Sbjct: 671 LKSGARPEFMVIGNMTEAQATTLARDVQKQLGA 703
>pdb|1XSO|A Chain A, Three-Dimensional Structure Of Xenopus Laevis Cu,Zn
Superoxide Dismutase B Determined By X-Ray
Crystallography At 1.5 Angstroms Resolution
pdb|1XSO|B Chain B, Three-Dimensional Structure Of Xenopus Laevis Cu,Zn
Superoxide Dismutase B Determined By X-Ray
Crystallography At 1.5 Angstroms Resolution
Length = 150
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 38/86 (44%), Gaps = 18/86 (20%)
Query: 132 FNPESNQIGAPADG---PGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAF 188
FNPE+ GAP D G+ G+ T E G +A ++I SL S GP +
Sbjct: 62 FNPENKNHGAPGDTDRHVGDLGNVTAEGG-VAQFKITDSLIS-----------LKGPNSI 109
Query: 189 KGNQWVGYDDQEIAKDKAKYVNDQKL 214
G V + E A D K ND+ L
Sbjct: 110 IGRTAVVH---EKADDLGKGGNDESL 132
>pdb|3F9V|A Chain A, Crystal Structure Of A Near Full-Length Archaeal Mcm:
Functional Insights For An Aaa+ Hexameric Helicase
Length = 595
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 4 KKKNTYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQL 49
+KK+ ++F ++LS++ + A+E +N+ + P+ E Y+ QL
Sbjct: 35 RKKSLIIEFSDVLSFNENLAYE-IINNTKIILPILEGALYDHILQL 79
>pdb|2VL6|A Chain A, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|B Chain B, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
pdb|2VL6|C Chain C, Structural Analysis Of The Sulfolobus Solfataricus Mcm
Protein N-Terminal Domain
Length = 268
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 4 KKKNTYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQL 49
+KK+ ++F ++LS++ + A+E +N+ + P+ E Y+ QL
Sbjct: 41 RKKSLIIEFSDVLSFNENLAYE-IINNTKIILPILEGALYDHILQL 85
>pdb|3PYO|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYR|D Chain D, Crystal Structure Of A Complex Containing Domain 3 From
The Psiv Igr Ires Rna Bound To The 70s Ribosome. This
File Contains The 50s Subunit Of The Second 70s
Ribosome.
pdb|3PYT|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The First 70s Ribosome.
pdb|3PYV|D Chain D, Crystal Structure Of A Complex Containing Domain 3 Of Crpv
Igr Ires Rna Bound To The 70s Ribosome. This File
Contains The 50s Subunit Of The Second 70s Ribosome
Length = 204
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 76 PAVNHHSPLFPLEEDG----EYNFEAQ--LSIDHTIK-HYLKSGADPDKLVLGIPTYGRS 128
P V +P E+DG + F Q ++ +K H+ K+G +P +++ R
Sbjct: 32 PVVQRRTP----EKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRIL-------RE 80
Query: 129 YTLFNPESNQIGAPADGPGEQGDAT 153
FNPE + + PGE+ D T
Sbjct: 81 IRDFNPEGDTVTVEIFKPGERVDVT 105
>pdb|2J01|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4).
This File Contains The 50s Subunit From Molecule I.
pdb|2J03|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Mrna, Trna And Paromomycin (Part 4 Of 4).
This File Contains The 50s Subunit From Molecule Ii.
pdb|2HGJ|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
Showing How The 16s 3'-End Mimicks Mrna E And P Codons.
This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgi.
pdb|2HGQ|E Chain E, Crystal Structure Of The 70s Thermus Thermophilus Ribosome
With Translocated And Rotated Shine-Dalgarno Duplex.
This Entry 2hgq Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 2hgp.
pdb|2HGU|E Chain E, 70s T.Th. Ribosome Functional Complex With Mrna And E- And
P-Site Trnas At 4.5a. This Entry 2hgu Contains 50s
Ribosomal Subunit. The 30s Ribosomal Subunit Can Be
Found In Pdb Entry 2hgr.
pdb|1VSA|C Chain C, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals
Functional Interactions And Rearrangements. This File,
1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome
Subunit Is In The File 2ow8
pdb|2V47|E Chain E, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 2 Of 4). This File Contains The 50s
Subunit For Molecule 1.
pdb|2V49|E Chain E, Structure Of The Ribosome Recycling Factor Bound To The
Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And
Trna-Fmet (Part 4 Of 4). This File Contains The 50s
Subunit Of Molecule 2.
pdb|1VSP|C Chain C, Interactions And Dynamics Of The Shine-Dalgarno Helix In
The 70s Ribosome. This File, 1vsp, Contains The 50s
Ribosome Subunit. 30s Ribosome Subunit Is In The File
2qnh
pdb|3D5B|E Chain E, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of One 70s
Ribosome. The Entire Crystal Structure Contains Two 70s
Ribosomes As Described In Remark 400.
pdb|3D5D|E Chain E, Structural Basis For Translation Termination On The 70s
Ribosome. This File Contains The 50s Subunit Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400.
pdb|3F1F|E Chain E, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes As Described In
Remark 400.
pdb|3F1H|E Chain E, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
50s Subunit Of The Second 70s Ribosome. The Entire
Crystal Structure Contains Two 70s Ribosomes As
Described In Remark 400.
pdb|2WDI|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule I.
pdb|2WDJ|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A-Site Trna,
Deacylated P-Site Trna, And E-Site Trna. This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WDL|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule I.
pdb|2WDN|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome In
Complex With Mrna, Paromomycin, Acylated A- And P-Site
Trnas, And E-Site Trna. This File Contains The 50s
Subunit For Molecule Ii.
pdb|2WH2|E Chain E, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|2WH4|E Chain E, Insights Into Translational Termination From The Structure
Of Rf2 Bound To The Ribosome
pdb|3HUX|E Chain E, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule I.
pdb|3HUZ|E Chain E, Structure Of Ef-P Bound To The 70s Ribosome; This File
Contains The 50s Subunit For Molecule Ii.
pdb|2WRJ|E Chain E, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 2 Of 4).
pdb|2WRL|E Chain E, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State. (Part 4 Of
4).
pdb|2WRO|E Chain E, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 2 Of 4).
pdb|2WRR|E Chain E, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 4 Of 4).
pdb|3KIR|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 2 Of 4)
pdb|3KIT|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Precleavage State; Part 4 Of 4)
pdb|3KIW|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 2 Of 4)
pdb|3KIY|E Chain E, Structure Of Rele Nuclease Bound To The 70s Ribosome
(Postcleavage State; Part 4 Of 4)
pdb|3KNI|E Chain E, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule I
pdb|3KNK|E Chain E, The Structures Of Viomycin Bound To The 70s Ribosome. This
File Contains The 50s Subunit For Molecule Ii.
pdb|3KNM|E Chain E, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule I.
pdb|3KNO|E Chain E, The Structures Of Capreomycin Bound To The 70s Ribosome.
Thi Contains The 50s Subunit For Molecule Ii
pdb|3I8F|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8f Contains 50s Ribosomal Subunit. The 30s
Ribosoma Can Be Found In Pdb Entry 3i8g. Molecule B In
The Same Asym Unit Is Deposited As 3i8g (30s) And 3i8f
(50s).
pdb|3I8I|E Chain E, Elongation Complex Of The 70s Ribosome With Three Trnas
And Entry 3i8i Contains 50s Ribosomal Subnit. The 30s
Ribosomal Can Be Found In Pdb Entry 3i8h. Molecule A In
The Same Asym Unit Is Deposited As 3i8f (50s) And 3i8g
(30s).
pdb|3I9C|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9c Contains 50s Ribosomal Subunit Of Molecule B.
The 30s Subunit Can Be Found In Pdb Entry 3i9b. Molecule
A In The S Asymmetric Unit Is Deposited As 3i9d (30s)
And 3i9e (50s)
pdb|3I9E|E Chain E, Initiation Complex Of 70s Ribosome With Two Trnas And
Mrna. 3i9e Contains 50s Ribosomal Subunit Of Molecule A.
The 30s Subunit Can Be Found In Pdb Entry 3i9d. Molecule
B In The S Asymmetric Unit Is Deposited As 3i9b (30s)
And 3i9c (50s)
pdb|2X9S|E Chain E, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|2X9U|E Chain E, Structure Of The 70s Ribosome Bound To Release Factor 2
And A Substrate Analog Provides Insights Into Catalysis
Of Peptide Release
pdb|3MRZ|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3ms0.
Molecule A In The Same Asymmetric Unit Is Deposited As
3mr8 (50s) And 3ms1 (30s).
pdb|3MS1|D Chain D, Recognition Of The Amber Stop Codon By Release Factor Rf1.
This Entry 3ms1 Contains 50s Ribosomal Subunit. The 30s
Ribosomal Subunit Can Be Found In Pdb Entry 3mr8.
Molecule B In The Same Asymmetric Unit Is Deposited As
3mrz (50s) And 3ms0 (30s).
pdb|2XG0|E Chain E, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 2 Of 4)
pdb|2XG2|E Chain E, Structure Of Cytotoxic Domain Of Colicin E3 Bound To The
70s Ribosome (Part 4 Of 4)
pdb|3OH5|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OH7|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Chloramphenicol. This File Contains The
50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OHJ|E Chain E, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHK|E Chain E, Structure Of The Thermus Thermophilus Ribosome Complexed
With Erythromycin. This File Contains The 50s Subunit Of
One 70s Ribosome. The Entire Crystal Structure Contains
Two 70s Ribosomes.
pdb|3OHZ|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI1|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Azithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI3|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3OI5|E Chain E, Structure Of The Thermus Thermophilus 70s Ribosome
Complexed With Telithromycin. This File Contains The 50s
Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|2XQE|E Chain E, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
pdb|2XTG|E Chain E, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUX|E Chain E, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|2Y0V|E Chain E, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0X|E Chain E, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0Z|E Chain E, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y11|E Chain E, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y13|E Chain E, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y15|E Chain E, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y17|E Chain E, Ef-Tu Complex 3
pdb|2Y19|E Chain E, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|3ZVP|E Chain E, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3UXQ|E Chain E, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UXR|E Chain E, The Structure Of Thermorubin In Complex With The 70s
Ribosome From Thermus Thermophilus. This File Contains
The 50s Subunit Of One 70s Ribosome. The Entire Crystal
Structure Contains Two 70s Ribosomes.
pdb|3UYE|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UYG|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex
pdb|3UZ1|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin
pdb|3UZ2|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Leu Complex With Paromomycin.
pdb|3UZ8|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZ9|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Tyr Complex.
pdb|3UZF|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex
pdb|3UZH|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex.
pdb|3UZK|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Near-Cognate
Trna-Tyr Complex With Paromomycin
pdb|3UZN|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Near-cognate
Trna-tyr Complex With Paromomycin
pdb|4ABS|E Chain E, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
pdb|4DHA|E Chain E, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|4DHC|E Chain E, Crystal Structure Of Yaej Bound To The 70s Ribosome
pdb|3V23|E Chain E, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V25|E Chain E, Crystal Structure Of Rmf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|3V27|E Chain E, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V29|E Chain E, Crystal Structure Of Hpf Bound To The 70s Ribosome. This
Entry Contains The 50s Subunit Of The 2nd Molecule In
The Asu.
pdb|3V2D|E Chain E, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 1st Ribosome In The Asu
pdb|3V2F|E Chain E, Crystal Structure Of Yfia Bound To The 70s Ribosome. This
Pdb Entry Contains Coordinates For The 50s Subunit Of
The 2nd Ribosome In The Asu
pdb|4G5L|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5N|E Chain E, Crystal Structure Of The 70s Ribosome With Tetracycline.
This Entry Contains The 50s Subunit Of Molecule B.
pdb|4G5U|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule A.
pdb|4G5W|E Chain E, Crystal Structure Of The 70s Ribosome With Tigecycline.
This Entry Contains The 50s Subunit Of Molecule B
Length = 206
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 76 PAVNHHSPLFPLEEDG----EYNFEAQ--LSIDHTIK-HYLKSGADPDKLVLGIPTYGRS 128
P V +P E+DG + F Q ++ +K H+ K+G +P +++ R
Sbjct: 32 PVVQRRTP----EKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRIL-------RE 80
Query: 129 YTLFNPESNQIGAPADGPGEQGDAT 153
FNPE + + PGE+ D T
Sbjct: 81 IRDFNPEGDTVTVEIFKPGERVDVT 105
>pdb|3FIN|E Chain E, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 50s Subunit.
pdb|3TVE|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The First
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
pdb|3TVH|E Chain E, Crystal Structure Analysis Of Ribosomal Decoding. This
Entry Contains The 50s Ribosomal Subunit Of The Second
70s Molecule In The Asymmetric Unit For The Cognate
Trna-Leu Complex
Length = 205
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 18/85 (21%)
Query: 76 PAVNHHSPLFPLEEDG----EYNFEAQ--LSIDHTIK-HYLKSGADPDKLVLGIPTYGRS 128
P V +P E+DG + F Q ++ +K H+ K+G +P +++ R
Sbjct: 32 PVVQRRTP----EKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRIL-------RE 80
Query: 129 YTLFNPESNQIGAPADGPGEQGDAT 153
FNPE + + PGE+ D T
Sbjct: 81 IRDFNPEGDTVTVEIFKPGERVDVT 105
>pdb|3QJ4|A Chain A, Crystal Structure Of Human Renalase (Isoform 1)
pdb|3QJ4|B Chain B, Crystal Structure Of Human Renalase (Isoform 1)
Length = 342
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 89 EDGEYNFEAQLSIDHTIKHYLK-SGAD 114
++G+ NF A I IKHYLK SGA+
Sbjct: 99 KEGDCNFVAPQGISSIIKHYLKESGAE 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,509,450
Number of Sequences: 62578
Number of extensions: 396260
Number of successful extensions: 1218
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 990
Number of HSP's gapped (non-prelim): 128
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 50 (23.9 bits)