Query psy5813
Match_columns 226
No_of_seqs 242 out of 2075
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 18:38:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02872 GH18_chitolectin_chito 100.0 1.4E-42 2.9E-47 296.5 17.8 171 52-226 169-342 (362)
2 smart00636 Glyco_18 Glycosyl h 100.0 1.1E-40 2.5E-45 281.9 16.5 160 57-225 173-334 (334)
3 cd02878 GH18_zymocin_alpha Zym 100.0 1.6E-40 3.4E-45 281.4 15.8 172 52-225 166-345 (345)
4 KOG2806|consensus 100.0 6.5E-41 1.4E-45 290.2 13.0 170 50-226 221-398 (432)
5 cd02873 GH18_IDGF The IDGF's ( 100.0 7.4E-40 1.6E-44 282.7 17.3 168 53-226 202-393 (413)
6 cd02875 GH18_chitobiase Chitob 100.0 2.6E-37 5.7E-42 262.3 15.4 155 53-226 169-340 (358)
7 COG3325 ChiA Chitinase [Carboh 100.0 2.3E-37 5.1E-42 257.7 10.2 170 55-225 238-423 (441)
8 cd02879 GH18_plant_chitinase_c 100.0 1.6E-36 3.5E-41 252.2 12.6 121 52-226 170-294 (299)
9 cd06548 GH18_chitinase The GH1 100.0 1.1E-35 2.5E-40 249.9 13.2 124 56-225 197-322 (322)
10 PF00704 Glyco_hydro_18: Glyco 100.0 4.1E-34 8.8E-39 242.4 13.9 161 57-225 181-343 (343)
11 cd02876 GH18_SI-CLP Stabilin-1 100.0 1.3E-33 2.7E-38 237.2 11.7 136 52-226 168-311 (318)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 3.7E-33 7.9E-38 234.0 11.8 141 52-226 158-306 (313)
13 cd06549 GH18_trifunctional GH1 100.0 1.8E-29 3.8E-34 210.0 11.7 137 53-226 151-294 (298)
14 COG3858 Predicted glycosyl hyd 99.9 3.4E-26 7.4E-31 190.6 10.0 144 50-226 260-411 (423)
15 cd06545 GH18_3CO4_chitinase Th 99.9 2.9E-23 6.3E-28 169.1 8.2 92 55-226 150-243 (253)
16 KOG2091|consensus 99.6 1E-15 2.2E-20 123.3 10.0 130 57-224 250-383 (392)
17 cd00598 GH18_chitinase-like Th 99.0 2.8E-10 6.1E-15 90.0 4.5 25 201-225 186-210 (210)
18 cd06544 GH18_narbonin Narbonin 98.3 8.7E-07 1.9E-11 72.1 4.6 54 57-130 169-222 (253)
19 cd02871 GH18_chitinase_D-like 98.3 3.9E-06 8.4E-11 70.6 8.2 56 57-125 182-248 (312)
20 COG3325 ChiA Chitinase [Carboh 97.6 2.3E-05 5.1E-10 66.9 1.9 45 1-45 234-278 (441)
21 cd02877 GH18_hevamine_XipI_cla 97.5 0.00088 1.9E-08 55.4 9.0 51 57-126 177-230 (280)
22 cd06542 GH18_EndoS-like Endo-b 97.4 0.00023 5.1E-09 58.0 4.3 46 55-127 163-208 (255)
23 cd06548 GH18_chitinase The GH1 96.7 0.0015 3.3E-08 55.1 3.5 38 2-39 193-230 (322)
24 KOG2806|consensus 96.5 0.0017 3.7E-08 57.1 2.8 37 2-38 226-264 (432)
25 cd06546 GH18_CTS3_chitinase GH 96.3 0.0043 9.3E-08 50.7 3.9 43 57-124 175-217 (256)
26 cd02879 GH18_plant_chitinase_c 96.2 0.004 8.7E-08 52.1 3.1 35 2-36 173-208 (299)
27 cd02873 GH18_IDGF The IDGF's ( 96.2 0.0042 9.1E-08 54.3 3.3 36 2-37 204-241 (413)
28 cd02872 GH18_chitolectin_chito 95.9 0.0059 1.3E-07 52.4 2.9 38 2-39 172-209 (362)
29 cd02878 GH18_zymocin_alpha Zym 95.7 0.009 1.9E-07 51.0 3.0 32 2-33 169-200 (345)
30 cd02876 GH18_SI-CLP Stabilin-1 95.3 0.013 2.9E-07 49.3 2.9 32 2-35 171-202 (318)
31 smart00636 Glyco_18 Glycosyl h 94.9 0.021 4.6E-07 48.3 3.0 37 3-39 169-205 (334)
32 cd02875 GH18_chitobiase Chitob 93.4 0.067 1.4E-06 45.9 3.0 33 2-34 171-206 (358)
33 PF00704 Glyco_hydro_18: Glyco 91.4 0.1 2.3E-06 44.0 1.6 37 2-38 176-212 (343)
34 cd02874 GH18_CFLE_spore_hydrol 91.1 0.19 4.1E-06 42.2 2.9 31 2-33 161-191 (313)
35 cd06543 GH18_PF-ChiA-like PF-C 89.7 0.14 3E-06 42.8 0.9 30 193-225 236-265 (294)
36 cd06545 GH18_3CO4_chitinase Th 89.3 0.29 6.3E-06 39.8 2.5 30 4-33 149-179 (253)
37 cd06549 GH18_trifunctional GH1 87.2 0.56 1.2E-05 39.1 2.9 23 2-24 153-175 (298)
38 PF08869 XisI: XisI protein; 79.5 1 2.2E-05 31.8 1.2 28 103-130 78-106 (111)
39 KOG1552|consensus 72.1 8 0.00017 31.5 4.6 51 62-129 88-139 (258)
40 cd06543 GH18_PF-ChiA-like PF-C 70.0 6.4 0.00014 32.9 3.8 22 52-73 156-184 (294)
41 cd06546 GH18_CTS3_chitinase GH 63.3 9.6 0.00021 31.1 3.6 27 196-222 225-253 (256)
42 COG3469 Chitinase [Carbohydrat 62.5 5.3 0.00011 32.5 1.8 59 56-124 198-266 (332)
43 smart00733 Mterf Mitochondrial 47.8 19 0.00041 17.8 2.0 21 193-214 10-30 (31)
44 PF14307 Glyco_tran_WbsX: Glyc 47.5 24 0.00052 30.1 3.6 28 195-222 53-80 (345)
45 PF02638 DUF187: Glycosyl hydr 39.6 33 0.00071 28.9 3.2 49 57-127 250-299 (311)
46 TIGR00250 RNAse_H_YqgF RNAse H 27.3 57 0.0012 23.6 2.3 23 103-126 38-60 (130)
47 PF07293 DUF1450: Protein of u 22.4 2.4E+02 0.0052 18.5 4.4 33 180-212 42-75 (78)
48 PF02126 PTE: Phosphotriestera 22.1 56 0.0012 27.5 1.6 21 102-122 170-190 (308)
49 PRK00109 Holliday junction res 21.9 80 0.0017 23.1 2.3 23 103-126 44-66 (138)
50 PF10566 Glyco_hydro_97: Glyco 21.5 1E+02 0.0022 25.5 3.0 23 200-223 73-95 (273)
51 COG4333 Uncharacterized protei 21.4 97 0.0021 22.9 2.5 25 197-221 53-77 (167)
52 TIGR03601 B_an_ocin probable h 21.3 97 0.0021 19.7 2.2 15 174-188 20-34 (79)
53 PF07999 RHSP: Retrotransposon 20.9 6E+02 0.013 22.6 8.8 98 101-225 108-214 (439)
No 1
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=1.4e-42 Score=296.53 Aligned_cols=171 Identities=51% Similarity=0.976 Sum_probs=154.6
Q ss_pred ccccc---ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceeee
Q psy5813 52 VSYDI---HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRS 128 (226)
Q Consensus 52 ~~yd~---~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~~ 128 (226)
..||+ +++||||+|||||+||+|++.+||+|||+..+.++.. ....+++.+|++|++.|+|++||+||||+|||.
T Consensus 169 ~~~d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~~~~~--~~~~~v~~~v~~~~~~gvp~~KlvlGlp~YG~~ 246 (362)
T cd02872 169 AAYDIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSADTGD--QKYLNVDYAIKYWLSKGAPPEKLVLGIPTYGRS 246 (362)
T ss_pred hcCCHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCCCccc--cccccHHHHHHHHHHcCCCHHHeEeccccccce
Confidence 45776 8999999999999999999999999999976543221 245689999999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEeecCCCceeeEEEeCCEEEEeCCHHHHHHHHHH
Q psy5813 129 YTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKY 208 (226)
Q Consensus 129 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~Si~~K~~~ 208 (226)
|++.+..+.++|+|..|++..|.++.+.|.++|.|||+.+ ..+|+..| |+.+++||+|++++||+|||++||+.|++|
T Consensus 247 ~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~~~~~-D~~~~~~y~~~~~~~v~ydd~~Si~~K~~~ 324 (362)
T cd02872 247 FTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGWTVVW-DDEQKVPYAYKGNQWVGYDDEESIALKVQY 324 (362)
T ss_pred eeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCcEEEE-eCCcceeEEEECCEEEEeCCHHHHHHHHHH
Confidence 9999888888999999988888889999999999999988 66787655 888899999999999999999999999999
Q ss_pred HHHcCCceEEEeeccCCC
Q psy5813 209 VNDQKLGGIMFWSIDNDD 226 (226)
Q Consensus 209 ~~~~glgGv~~W~l~~DD 226 (226)
|+++||||+++|+|++||
T Consensus 325 ~~~~~lgGv~iW~l~~DD 342 (362)
T cd02872 325 LKSKGLGGAMVWSIDLDD 342 (362)
T ss_pred HHhCCCceEEEEeeecCc
Confidence 999999999999999998
No 2
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=1.1e-40 Score=281.90 Aligned_cols=160 Identities=44% Similarity=0.849 Sum_probs=145.9
Q ss_pred ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceeeeeeecCCCC
Q psy5813 57 HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRSYTLFNPES 136 (226)
Q Consensus 57 ~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~~~~~~~~~~ 136 (226)
+++||||+||+||+|++|+..+||+|||+....++ ..++++.+|+.|++.|+|++||+||||||||.|++.++.+
T Consensus 173 ~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~~~-----~~~~v~~~v~~~~~~gvp~~KlvlGip~YG~~~~~~~~~~ 247 (334)
T smart00636 173 AKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPGDP-----EKYNVDYAVKYYLCKGVPPSKLVLGIPFYGRGWTLVDGSN 247 (334)
T ss_pred HhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCCCC-----CCccHHHHHHHHHHcCCCHHHeEEeeccccCccccCCCCc
Confidence 89999999999999999998899999999765432 3568999999999999999999999999999999999888
Q ss_pred CCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEeecCCCceeeEEEe-C-CEEEEeCCHHHHHHHHHHHHHcCC
Q psy5813 137 NQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFK-G-NQWVGYDDQEIAKDKAKYVNDQKL 214 (226)
Q Consensus 137 ~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~~~-~-~~~i~ydd~~Si~~K~~~~~~~gl 214 (226)
.++++|+.|++..+.++.+.|.++|.|||+.+ +++..| |+.+++||.|+ + ++||||||++|+++|++||+++||
T Consensus 248 ~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~~~~~~-d~~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~~~~~~l 323 (334)
T smart00636 248 NGPGAPFTGPATGGPGTWEGGVVDYREICKLL---GATVVW-DDTAKAPYAYNPGTGQWVSYDDPRSIKAKADYVKDKGL 323 (334)
T ss_pred CCCCCcccCCCCCCCCCCcccchhHHHHHhhc---CcEEEE-cCCCceeEEEECCCCEEEEcCCHHHHHHHHHHHHhCCC
Confidence 89999999988888888899999999999876 567655 77789999997 4 499999999999999999999999
Q ss_pred ceEEEeeccCC
Q psy5813 215 GGIMFWSIDND 225 (226)
Q Consensus 215 gGv~~W~l~~D 225 (226)
||+|+|+|++|
T Consensus 324 gGv~iW~l~~D 334 (334)
T smart00636 324 GGVMIWELDAD 334 (334)
T ss_pred CeEEEEeecCC
Confidence 99999999997
No 3
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=1.6e-40 Score=281.37 Aligned_cols=172 Identities=22% Similarity=0.417 Sum_probs=140.5
Q ss_pred ccccc---ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceeee
Q psy5813 52 VSYDI---HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRS 128 (226)
Q Consensus 52 ~~yd~---~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~~ 128 (226)
..||+ +++||||||||||+||+|+..+++++|..+.... ........+++.+|++|++.|||++|||||||||||.
T Consensus 166 ~~yd~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p~~p~~~~-~~~~~~~~~~~~~v~~~~~~Gvp~~KlvlGip~YGr~ 244 (345)
T cd02878 166 KGFPIKDMAKYVDYIVYMTYDLHGQWDYGNKWASPGCPAGNC-LRSHVNKTETLDALSMITKAGVPSNKVVVGVASYGRS 244 (345)
T ss_pred cCCcHHHHHhhCcEEEEEeecccCCcCccCCcCCCCCCcccc-cccCCCchhHHHHHHHHHHcCCCHHHeEEeeccccce
Confidence 35665 9999999999999999999877777774322110 0000122358899999999999999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCCC---CCCCCCCCcceeHHHHHhhc-CCCCceEeecCCCceeeEE-EeCCEEEEeCCHHHHH
Q psy5813 129 YTLFNPESNQIGAPADGPGE---QGDATREKGYLAYYEICSSL-KSDDWSVEHPNPRAMGPYA-FKGNQWVGYDDQEIAK 203 (226)
Q Consensus 129 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~g~~~y~~i~~~~-~~~~~~~~~~d~~~~~~y~-~~~~~~i~ydd~~Si~ 203 (226)
|+++++.++++++|+.|++. .+.++...|++.+.|||..+ +..+++. +||+.+++||. |++++||+|||++||+
T Consensus 245 ~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~~~~-~~d~~~~~~y~~~~~~~wv~ydd~~Si~ 323 (345)
T cd02878 245 FKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSKNKR-WYDTDSDSDILVYDDDQWVAYMSPATKA 323 (345)
T ss_pred eeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCCCcE-EEecCCCccEEEEcCCEEEEcCCHHHHH
Confidence 99999999999999988763 45666777888889999865 3445665 55888899986 6778999999999999
Q ss_pred HHHHHHHHcCCceEEEeeccCC
Q psy5813 204 DKAKYVNDQKLGGIMFWSIDND 225 (226)
Q Consensus 204 ~K~~~~~~~glgGv~~W~l~~D 225 (226)
.|++||+++||||+|+|+|++|
T Consensus 324 ~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 324 ARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred HHHHHHHhCCCceEEEeeccCC
Confidence 9999999999999999999987
No 4
>KOG2806|consensus
Probab=100.00 E-value=6.5e-41 Score=290.21 Aligned_cols=170 Identities=33% Similarity=0.646 Sum_probs=148.6
Q ss_pred ccccccc---ccccceeeeeeecCCCCCCC--CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccc
Q psy5813 50 SIVSYDI---HRYLDFMNILSYDYHSAFEP--AVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPT 124 (226)
Q Consensus 50 ~~~~yd~---~~~~D~v~vMtYD~~g~w~~--~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~ 124 (226)
...+||+ .++|||||||+|||||+|.. .+||+|||+..... ....++++.++++|++.|.|++||||||||
T Consensus 221 ~~~~ydi~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~~~----~~~~~Nvd~~~ky~~~~~~~~~Kl~~gip~ 296 (432)
T KOG2806|consen 221 YSDGYDYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGPSM----TNPKMNVDSLLKYWTEKGLPPSKLVLALPF 296 (432)
T ss_pred hhccCCHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCCcc----cccCcchhhhHHHHhhcCCCchheEEEEec
Confidence 4478887 99999999999999999998 78999999976431 135679999999999999999999999999
Q ss_pred eeeeeeecCCCCCCCCCCCCCCCCCCC-CCCCCcceeHHHHHhhcCCCCceEeecCCCceeeEEEe--CCEEEEeCCHHH
Q psy5813 125 YGRSYTLFNPESNQIGAPADGPGEQGD-ATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFK--GNQWVGYDDQEI 201 (226)
Q Consensus 125 Yg~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~~~--~~~~i~ydd~~S 201 (226)
|||.|++++.... ++.+..+++..+. .+...|+++|.|||+...+.+ . ..||+.+++||+|+ +++||+|||++|
T Consensus 297 yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~-~-~~~d~~~~~~Y~~~~~~~~wvtyen~~S 373 (432)
T KOG2806|consen 297 YGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG-V-THWDEETQTPYLYNIPYDQWVTYENERS 373 (432)
T ss_pred ceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC-C-ceecCCceeeeEEecCCCeEEecCCHHH
Confidence 9999999887666 7777777776665 556788999999999766554 3 34588899999999 899999999999
Q ss_pred HHHHHHHHHHcCCceEEEeeccCCC
Q psy5813 202 AKDKAKYVNDQKLGGIMFWSIDNDD 226 (226)
Q Consensus 202 i~~K~~~~~~~glgGv~~W~l~~DD 226 (226)
|+.|++||++++|||+++|.|++||
T Consensus 374 i~~K~~Yvk~~~lGGv~iW~vd~DD 398 (432)
T KOG2806|consen 374 IHIKADYAKDEGLGGVAIWNIDQDD 398 (432)
T ss_pred HHHHHHHHHhcCCceEEEEeccCCC
Confidence 9999999999999999999999998
No 5
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=7.4e-40 Score=282.75 Aligned_cols=168 Identities=31% Similarity=0.625 Sum_probs=140.4
Q ss_pred cccc---ccccceeeeeeecCCCCCCC--CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceee
Q psy5813 53 SYDI---HRYLDFMNILSYDYHSAFEP--AVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGR 127 (226)
Q Consensus 53 ~yd~---~~~~D~v~vMtYD~~g~w~~--~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~ 127 (226)
.||+ +++||||||||||+||+|.. .++|+|||+..... ...++++.+|++|++.|||++|||||||||||
T Consensus 202 ~~d~~~l~~~vD~inlMtYD~~g~~~~~~~~~~~apL~~~~~~-----~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr 276 (413)
T cd02873 202 YFDVPAIANNVDFVNLATFDFLTPERNPEEADYTAPIYELYER-----NPHHNVDYQVKYWLNQGTPASKLNLGIATYGR 276 (413)
T ss_pred ccCHHHHhhcCCEEEEEEecccCCCCCCCccCcCCccCCCccc-----cccccHHHHHHHHHHcCCCHHHeEEEEeccee
Confidence 4676 99999999999999999864 57999999965421 24579999999999999999999999999999
Q ss_pred eeeecCCCC-CC--CCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCC--------ceEeecCCCce-eeEEEeC-----
Q psy5813 128 SYTLFNPES-NQ--IGAPADGPGEQGDATREKGYLAYYEICSSLKSDD--------WSVEHPNPRAM-GPYAFKG----- 190 (226)
Q Consensus 128 ~~~~~~~~~-~~--~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~--------~~~~~~d~~~~-~~y~~~~----- 190 (226)
.|+++++.. .+ ..++..|++..|+++.+.|+++|.|||+.+...+ |+. .+|+..+ .||.|..
T Consensus 277 ~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~l~y~ei~~~~~~~~~~~g~~~~~~~-~~d~~~~~~~y~y~~~d~~~ 355 (413)
T cd02873 277 AWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGLLSWPEICSKLPNPANLKGADAPLRK-VGDPTKRFGSYAYRPADENG 355 (413)
T ss_pred eeEccCCCCCcCCCCCccCCCCCCCCCCcCCCccccHHHHHHhhccCccccccccceeE-eecccccccceEEeccccCC
Confidence 999886542 22 2356788888899999999999999999876532 333 4576655 5899842
Q ss_pred --CEEEEeCCHHHHHHHHHHHHHcCCceEEEeeccCCC
Q psy5813 191 --NQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226 (226)
Q Consensus 191 --~~~i~ydd~~Si~~K~~~~~~~glgGv~~W~l~~DD 226 (226)
++||+|||++||+.|++||+++||||+|+|++++||
T Consensus 356 ~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~DD 393 (413)
T cd02873 356 EHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDD 393 (413)
T ss_pred CCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCc
Confidence 479999999999999999999999999999999998
No 6
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=2.6e-37 Score=262.34 Aligned_cols=155 Identities=26% Similarity=0.404 Sum_probs=125.3
Q ss_pred cccc---ccccceeeeeeecCCCC-CCC--CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeecccee
Q psy5813 53 SYDI---HRYLDFMNILSYDYHSA-FEP--AVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYG 126 (226)
Q Consensus 53 ~yd~---~~~~D~v~vMtYD~~g~-w~~--~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg 126 (226)
.||+ +++||||+|||||+|++ |++ .+||+||+. +++.+|++|++.|||++|||||||+||
T Consensus 169 ~yd~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~~--------------~v~~~v~~~~~~gvp~~KLvLGip~YG 234 (358)
T cd02875 169 CYDYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPYS--------------QTLSGYNNFTKLGIDPKKLVMGLPWYG 234 (358)
T ss_pred ccCHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCch--------------hHHHHHHHHHHcCCCHHHeEEEeCCCC
Confidence 3777 99999999999999985 663 578999875 788999999999999999999999999
Q ss_pred eeeeecCCCCC-----CCCCCCCCCCCCCCCCCC-CcceeHHHHHhhcCCCCceEeecCCCceeeEE-EeC----CEEEE
Q psy5813 127 RSYTLFNPESN-----QIGAPADGPGEQGDATRE-KGYLAYYEICSSLKSDDWSVEHPNPRAMGPYA-FKG----NQWVG 195 (226)
Q Consensus 127 ~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~-~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~-~~~----~~~i~ 195 (226)
|.|++.++... .++.|..|.+ ++.. .+.++|.|||+.+++.++... ||+.+++||. |.+ .+|||
T Consensus 235 r~w~~~~~~~~~~~~~~~~~p~~g~~----~~~~~g~~i~Y~ei~~~~~~~~~~~~-wD~~~~~py~~y~d~~g~~~~V~ 309 (358)
T cd02875 235 YDYPCLNGNLEDVVCTIPKVPFRGAN----CSDAAGRQIPYSEIMKQINSSIGGRL-WDSEQKSPFYNYKDKQGNLHQVW 309 (358)
T ss_pred CceeCCCCcccCcccCCCCCCcCCCC----CcCCCCCccCHHHHHHHHhcCCCcee-eccccccceEEEecCCCcEEEEE
Confidence 99998665422 2233433321 2222 246899999998877666654 5888999987 543 27999
Q ss_pred eCCHHHHHHHHHHHHHcCCceEEEeeccCCC
Q psy5813 196 YDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226 (226)
Q Consensus 196 ydd~~Si~~K~~~~~~~glgGv~~W~l~~DD 226 (226)
|||++||+.|++||+++||||+|+|+||+||
T Consensus 310 ydD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD 340 (358)
T cd02875 310 YDNPQSLSIKVAYAKNLGLKGIGMWNGDLLD 340 (358)
T ss_pred eCCHHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 9999999999999999999999999999998
No 7
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.3e-37 Score=257.71 Aligned_cols=170 Identities=29% Similarity=0.575 Sum_probs=123.2
Q ss_pred ccccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccc-----cccccHHHHHHHHHHcCCCCCCeeeeccceeeee
Q psy5813 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNF-----EAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRSY 129 (226)
Q Consensus 55 d~~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~-----~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~~~ 129 (226)
+++++|||||+|||||||+|+..+|||||||..+.+++... .........++...+.++||+|||||+|||||+|
T Consensus 238 ~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~Ly~~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw 317 (441)
T COG3325 238 EIAQYVDYINIMTYDFHGAWNETLGHHAALYGTPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGW 317 (441)
T ss_pred HHHHHHhhhheeeeecccccccccccccccccCCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeecccccccc
Confidence 45999999999999999999999999999998766654321 1222223466667778899999999999999999
Q ss_pred eecCCCCCCC-CCCCCCCC----CCCC---CCCCCcceeHHHHHhhc-CCCCceEeecCCCceeeEEEeC--CEEEEeCC
Q psy5813 130 TLFNPESNQI-GAPADGPG----EQGD---ATREKGYLAYYEICSSL-KSDDWSVEHPNPRAMGPYAFKG--NQWVGYDD 198 (226)
Q Consensus 130 ~~~~~~~~~~-g~~~~~~~----~~~~---~~~~~g~~~y~~i~~~~-~~~~~~~~~~d~~~~~~y~~~~--~~~i~ydd 198 (226)
..+++...+. +-..++.. ..|. ......+.....|.... ...++. ++||+.+++||+|+. +.||+|||
T Consensus 318 ~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a~n~~~~~~~~~~l~~n~~~~~g~~-~~~d~~a~apyL~n~~~~vFiSyDd 396 (441)
T COG3325 318 NGVDGGSLGTCPGLYQGLDNSGIPKGTWEAGNGDKDYGKAYDLDANNAGKNGYE-RYWDDVAKAPYLYNPEKGVFISYDD 396 (441)
T ss_pred ccccCcccCCCCCcccccCCCCCCCCcccccccCccchhhccccccccCCCCee-EecccccccceeecCCCCeEEEccC
Confidence 9888765321 11111111 1111 11111222222443332 334555 567999999999976 68999999
Q ss_pred HHHHHHHHHHHHHcCCceEEEeeccCC
Q psy5813 199 QEIAKDKAKYVNDQKLGGIMFWSIDND 225 (226)
Q Consensus 199 ~~Si~~K~~~~~~~glgGv~~W~l~~D 225 (226)
++||+.|++||++++|||+|+|++++|
T Consensus 397 ~rSvkaK~eYv~~n~LGG~m~We~sgD 423 (441)
T COG3325 397 PRSVKAKAEYVADNNLGGMMFWEISGD 423 (441)
T ss_pred CcchhhHHHHHhhcCccceEEEEecCC
Confidence 999999999999999999999999998
No 8
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=1.6e-36 Score=252.19 Aligned_cols=121 Identities=36% Similarity=0.761 Sum_probs=110.2
Q ss_pred ccccc---ccccceeeeeeecCCCCCCC-CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceee
Q psy5813 52 VSYDI---HRYLDFMNILSYDYHSAFEP-AVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGR 127 (226)
Q Consensus 52 ~~yd~---~~~~D~v~vMtYD~~g~w~~-~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~ 127 (226)
.+||+ +++||||+|||||+||+|++ .++|+|||+..+ ..++++.+|++|++.|+|++|||||||||||
T Consensus 170 ~~yd~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~~~--------~~~~~~~~v~~~~~~g~p~~KlvlGvp~YGr 241 (299)
T cd02879 170 VSYPIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYDPN--------SNVSTDYGIKSWIKAGVPAKKLVLGLPLYGR 241 (299)
T ss_pred ccCCHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCCCC--------CCCCHHHHHHHHHHcCCCHHHEEEEeccccc
Confidence 45765 89999999999999999986 468999999643 3468999999999999999999999999999
Q ss_pred eeeecCCCCCCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEeecCCCceeeEEEeCCEEEEeCCHHHHHHHHH
Q psy5813 128 SYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAK 207 (226)
Q Consensus 128 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~Si~~K~~ 207 (226)
.|++ ||+.+++||.+++++||+|||++||++|++
T Consensus 242 ~~~~----------------------------------------------~D~~~~~~y~~~~~~wi~ydd~~Si~~K~~ 275 (299)
T cd02879 242 AWTL----------------------------------------------YDTTTVSSYVYAGTTWIGYDDVQSIAVKVK 275 (299)
T ss_pred cccc----------------------------------------------cCCCcceEEEEECCEEEEeCCHHHHHHHHH
Confidence 9972 477788999999999999999999999999
Q ss_pred HHHHcCCceEEEeeccCCC
Q psy5813 208 YVNDQKLGGIMFWSIDNDD 226 (226)
Q Consensus 208 ~~~~~glgGv~~W~l~~DD 226 (226)
||+++||||+|+|+|++||
T Consensus 276 ~a~~~~lgGv~~W~l~~Dd 294 (299)
T cd02879 276 YAKQKGLLGYFAWAVGYDD 294 (299)
T ss_pred HHHhCCCCeEEEEEeecCC
Confidence 9999999999999999998
No 9
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=1.1e-35 Score=249.91 Aligned_cols=124 Identities=40% Similarity=0.824 Sum_probs=112.1
Q ss_pred cccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceeeeeeecCCC
Q psy5813 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRSYTLFNPE 135 (226)
Q Consensus 56 ~~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~~~~~~~~~ 135 (226)
++++||||||||||+||+|+..+||+|||+..+.++ ...++++.+|+.|++.|+|++|||||||+|||.|++
T Consensus 197 l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~~~----~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~---- 268 (322)
T cd06548 197 IAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPADP----PGGYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG---- 268 (322)
T ss_pred HhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCCCC----CCCccHHHHHHHHHHcCCCHHHeEEEecccccccCC----
Confidence 399999999999999999999999999999765432 245699999999999999999999999999999973
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEeecCCCceeeEEEeC--CEEEEeCCHHHHHHHHHHHHHcC
Q psy5813 136 SNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFKG--NQWVGYDDQEIAKDKAKYVNDQK 213 (226)
Q Consensus 136 ~~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~~~~--~~~i~ydd~~Si~~K~~~~~~~g 213 (226)
++. .||+.+++||+|++ ++||+|||++||++|++||+++|
T Consensus 269 -------------------------------------~~~-~~D~~~~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~ 310 (322)
T cd06548 269 -------------------------------------YTR-YWDEVAKAPYLYNPSTKTFISYDDPRSIKAKADYVKDKG 310 (322)
T ss_pred -------------------------------------cEE-EEcCCcceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcC
Confidence 343 45889999999987 89999999999999999999999
Q ss_pred CceEEEeeccCC
Q psy5813 214 LGGIMFWSIDND 225 (226)
Q Consensus 214 lgGv~~W~l~~D 225 (226)
|||+|+|+|++|
T Consensus 311 LgGv~~W~l~~D 322 (322)
T cd06548 311 LGGVMFWELSGD 322 (322)
T ss_pred CccEEEEeccCC
Confidence 999999999998
No 10
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=4.1e-34 Score=242.40 Aligned_cols=161 Identities=38% Similarity=0.803 Sum_probs=136.4
Q ss_pred ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceeeeeeecCCCC
Q psy5813 57 HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRSYTLFNPES 136 (226)
Q Consensus 57 ~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~~~~~~~~~~ 136 (226)
.++||||+||+||++++|+..++|++||+....+ ...++++.+|+.|+..|+|++||+||||+|||.|++.+...
T Consensus 181 ~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~v~~~~~~g~p~~Kl~lglp~yg~~~~~~~~~~ 255 (343)
T PF00704_consen 181 AQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSSWD-----SNYYSVDSAVQYWIKAGVPPSKLVLGLPFYGRSWTLVNGSP 255 (343)
T ss_dssp HTTSSEEEEETTSSSSTTSSBETTSSSSSHTTTS-----GTSSSHHHHHHHHHHTTSTGGGEEEEEESEEEEEESSSSTT
T ss_pred cccccccccccccCCCCcccccccccccccCCcc-----CCCceeeeehhhhccccCChhheeecCCcccccceecCCcC
Confidence 8999999999999999999988999999965432 13568999999999999999999999999999999888766
Q ss_pred CCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEeecCCCceeeEEEeC--CEEEEeCCHHHHHHHHHHHHHcCC
Q psy5813 137 NQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFKG--NQWVGYDDQEIAKDKAKYVNDQKL 214 (226)
Q Consensus 137 ~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~~~~--~~~i~ydd~~Si~~K~~~~~~~gl 214 (226)
....++.. ...+.++...|.+.|.++|..++..++...+ |+.+++||.+.+ ++||+|||++|+++|++||+++||
T Consensus 256 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~y~~~~~~~~~i~~e~~~Si~~K~~~v~~~gl 332 (343)
T PF00704_consen 256 NGPWGPAY--WSPGKGTKNAGILSYYELCALLKSNGYTVQW-DDTAQAPYAYNDDKKHWISYEDPRSIKAKMDYVKEKGL 332 (343)
T ss_dssp STTTBBEE--SEETTTTSBTTEEEHHHHHHHTHHTTEEEEE-ETTTTEEEEEETTTTEEEEE--HHHHHHHHHHHHHTT-
T ss_pred CCCCCccc--ccccccccCCCccccccchhhcccCCcceEE-eecccceEEEecCCCeEEEeCCHHHHHHHHHHHHhCCC
Confidence 55554433 2334567788999999999998767777766 555999999987 799999999999999999999999
Q ss_pred ceEEEeeccCC
Q psy5813 215 GGIMFWSIDND 225 (226)
Q Consensus 215 gGv~~W~l~~D 225 (226)
||+++|+|++|
T Consensus 333 gGv~~W~l~~D 343 (343)
T PF00704_consen 333 GGVAIWSLDQD 343 (343)
T ss_dssp SEEEEETGGGS
T ss_pred CEEEEEecCCC
Confidence 99999999998
No 11
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=1.3e-33 Score=237.17 Aligned_cols=136 Identities=21% Similarity=0.335 Sum_probs=109.8
Q ss_pred ccccc---ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcC-CCCCCeeeeccceee
Q psy5813 52 VSYDI---HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSG-ADPDKLVLGIPTYGR 127 (226)
Q Consensus 52 ~~yd~---~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~g-vp~~KlvlGip~Yg~ 127 (226)
..||+ +++||||+|||||+||+ +.+||+|||+ +++.+|+++++.| +|++|||||||+|||
T Consensus 168 ~~~d~~~l~~~vD~v~lMtYD~~~~--~~~g~~apl~--------------~v~~~v~~~~~~~~vp~~KlvlGip~YG~ 231 (318)
T cd02876 168 TRKDFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPLS--------------WVRSCLELLLPESGKKRAKILLGLNFYGN 231 (318)
T ss_pred cccCHHHHHhhccEEEEEeeccCCC--CCCCCCCCcH--------------HHHHHHHHHHhcCCCCHHHeEEecccccc
Confidence 35666 89999999999999997 6789999997 8999999999987 999999999999999
Q ss_pred eeeecCCCCCCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEeecCCC-ceeeEEEeC---CEEEEeCCHHHHH
Q psy5813 128 SYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPR-AMGPYAFKG---NQWVGYDDQEIAK 203 (226)
Q Consensus 128 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~-~~~~y~~~~---~~~i~ydd~~Si~ 203 (226)
.|++.+ .+.+ ++..+.++.++..+++..| |+. .+.+|.|++ ++||||||++|++
T Consensus 232 ~w~~~~-----~~~~----------------~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~y~~~~~~~~v~ydd~~Si~ 289 (318)
T cd02876 232 DYTLPG-----GGGA----------------ITGSEYLKLLKSNKPKLQW-DEKSAEHFFEYKNKGGKHAVFYPTLKSIQ 289 (318)
T ss_pred ccccCC-----CCce----------------eehHHHHHHHHhcCCCcee-ccCCCcceEEEecCCCcEEEEeCCHHHHH
Confidence 998643 1111 1223333333444566555 666 555688865 7999999999999
Q ss_pred HHHHHHHHcCCceEEEeeccCCC
Q psy5813 204 DKAKYVNDQKLGGIMFWSIDNDD 226 (226)
Q Consensus 204 ~K~~~~~~~glgGv~~W~l~~DD 226 (226)
.|+++|+++|| |+|+|+|++++
T Consensus 290 ~K~~~a~~~~l-Gv~~W~lg~~~ 311 (318)
T cd02876 290 LRLDLAKELGT-GISIWELGQGL 311 (318)
T ss_pred HHHHHHHHcCC-cEEEEcccCCc
Confidence 99999999999 99999999975
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=3.7e-33 Score=234.03 Aligned_cols=141 Identities=19% Similarity=0.374 Sum_probs=116.9
Q ss_pred ccccc---ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceeee
Q psy5813 52 VSYDI---HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRS 128 (226)
Q Consensus 52 ~~yd~---~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~~ 128 (226)
..||+ +++||||+||+||+||+|+ .+||+||+. +++..+++++ .|+|++||+||||+|||.
T Consensus 158 ~~~~~~~l~~~vD~v~lm~YD~~~~~~-~~gp~a~~~--------------~~~~~~~~~~-~gvp~~KlvlGip~YG~~ 221 (313)
T cd02874 158 GAYDYAAIGKIVDFVVLMTYDWHWRGG-PPGPVAPIG--------------WVERVLQYAV-TQIPREKILLGIPLYGYD 221 (313)
T ss_pred cccCHHHHHhhCCEEEEEEeccCCCCC-CCCccCChH--------------HHHHHHHHHH-hcCCHHHEEEeecccccc
Confidence 45665 8999999999999999874 579999885 7778887766 789999999999999999
Q ss_pred eeecCCCCCCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEeecCCCceeeEE-EeC----CEEEEeCCHHHHH
Q psy5813 129 YTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYA-FKG----NQWVGYDDQEIAK 203 (226)
Q Consensus 129 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~-~~~----~~~i~ydd~~Si~ 203 (226)
|++.++. ....+.++|.++++.+++.+++..| |+.+++||. |.+ .+||||||++|++
T Consensus 222 w~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~~~~~~~y~~~~g~~~~v~y~d~~Si~ 283 (313)
T cd02874 222 WTLPYKK-----------------GGKASTISPQQAINLAKRYGAEIQY-DEEAQSPFFRYVDEQGRRHEVWFEDARSLQ 283 (313)
T ss_pred cccCCCC-----------------CcCccccCHHHHHHHHHHcCCCeEE-CcccCCCcEEEEeCCCCEEEEEeCcHHHHH
Confidence 9864310 0112457788998888888877665 777888865 432 4799999999999
Q ss_pred HHHHHHHHcCCceEEEeeccCCC
Q psy5813 204 DKAKYVNDQKLGGIMFWSIDNDD 226 (226)
Q Consensus 204 ~K~~~~~~~glgGv~~W~l~~DD 226 (226)
.|+++++++||||+++|+|++||
T Consensus 284 ~K~~~~~~~~lgGv~iW~lg~dD 306 (313)
T cd02874 284 AKFELAKEYGLRGVSYWRLGLED 306 (313)
T ss_pred HHHHHHHHcCCCeEEEEECCCCC
Confidence 99999999999999999999998
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=99.96 E-value=1.8e-29 Score=210.00 Aligned_cols=137 Identities=16% Similarity=0.216 Sum_probs=102.4
Q ss_pred cccc---ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceeeee
Q psy5813 53 SYDI---HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRSY 129 (226)
Q Consensus 53 ~yd~---~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~~~ 129 (226)
.||+ +++||+|+|||||+|++++ .+||.+|+. +++..+++.. .|+|++||+||||+|||.|
T Consensus 151 ~~d~~~l~~~~D~v~lMtYD~~~~~~-~~gp~a~~~--------------~~~~~~~~~~-~~vp~~KlvlGip~YG~~w 214 (298)
T cd06549 151 DWNLKALARNADKLILMAYDEHYQGG-APGPIASQD--------------WFESNLAQAV-KKLPPEKLIVALGSYGYDW 214 (298)
T ss_pred CCCHHHHHHhCCEEEEEEeccCCCCC-CCCCCCChh--------------hHHHHHHHHH-hCCCHHHEEEEecccCccc
Confidence 4655 9999999999999998764 345555442 6777777654 6799999999999999999
Q ss_pred eecCCCCCCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEeecCCCceeeEEEe-C---CEEEEeCCHHHHHHH
Q psy5813 130 TLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFK-G---NQWVGYDDQEIAKDK 205 (226)
Q Consensus 130 ~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~~~-~---~~~i~ydd~~Si~~K 205 (226)
++... +. .++..+...++.+.+....++++.+...|.|. + .++|||||++|++.|
T Consensus 215 ~~~~~-----~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K 273 (298)
T cd06549 215 TKGGN-----TK----------------AISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQ 273 (298)
T ss_pred cCCCC-----Cc----------------ccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcEEEEEeccHHHHHHH
Confidence 86321 00 12334444444445556666555555556663 2 379999999999999
Q ss_pred HHHHHHcCCceEEEeeccCCC
Q psy5813 206 AKYVNDQKLGGIMFWSIDNDD 226 (226)
Q Consensus 206 ~~~~~~~glgGv~~W~l~~DD 226 (226)
+++|+++||+|+++|+|++||
T Consensus 274 ~~~a~~~~l~Gva~W~lg~ed 294 (298)
T cd06549 274 LKAVQRLGPAGVALWRLGSED 294 (298)
T ss_pred HHHHHHcCCCcEEEEeccCCC
Confidence 999999999999999999997
No 14
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=99.93 E-value=3.4e-26 Score=190.58 Aligned_cols=144 Identities=20% Similarity=0.369 Sum_probs=109.0
Q ss_pred ccccccc---ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeecccee
Q psy5813 50 SIVSYDI---HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYG 126 (226)
Q Consensus 50 ~~~~yd~---~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg 126 (226)
+...||+ ++++|||.|||||.|.+| ..+|+.||+- +|+..+++.+.. +|++||+||||+||
T Consensus 260 W~~~~dy~a~Gkiad~v~lMtYd~h~~g-G~PG~vA~i~--------------~vr~~ieya~T~-iP~~Kv~mGip~YG 323 (423)
T COG3858 260 WHGAYDYVALGKIADFVILMTYDWHYSG-GPPGPVASIG--------------WVRKVIEYALTV-IPAEKVMMGIPLYG 323 (423)
T ss_pred ccchhhhhhhceeeeEEEEEEeccCcCC-CCCCcccCch--------------hHhhhhhhhhee-cchHHeEEcccccc
Confidence 3466787 999999999999999987 3468888765 888888888875 99999999999999
Q ss_pred eeeeecCCCCCCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEeecCCCceeeEEE-e---C-CEEEEeCCHHH
Q psy5813 127 RSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAF-K---G-NQWVGYDDQEI 201 (226)
Q Consensus 127 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~~-~---~-~~~i~ydd~~S 201 (226)
++|.+.... .|..+. . ++..+-..+..+.+.++ .||..++.||.| . + .|+|||||++|
T Consensus 324 YDW~~~y~~---~g~~~~------------a-~~~~~~i~ia~~y~A~I-q~D~~~qsp~F~y~D~eg~~h~VWfeD~~s 386 (423)
T COG3858 324 YDWTLPYDP---LGYLAR------------A-ISPDEAIDIANRYNATI-QYDATSQSPFFYYVDKEGRYHEVWFEDARS 386 (423)
T ss_pred ccccCCCCC---Ccceee------------e-cCcchhhhhhcccCCcc-CcCccccCceEEEEcCCCceEEEEcCchHH
Confidence 999964321 111111 1 22222112222233344 469999999665 2 3 68999999999
Q ss_pred HHHHHHHHHHcCCceEEEeeccCCC
Q psy5813 202 AKDKAKYVNDQKLGGIMFWSIDNDD 226 (226)
Q Consensus 202 i~~K~~~~~~~glgGv~~W~l~~DD 226 (226)
++.|.+++|++||.||++|.|+++|
T Consensus 387 ~~~k~~lik~ygl~GVs~W~Lg~e~ 411 (423)
T COG3858 387 FQTKLDLIKEYGLRGVSYWVLGQED 411 (423)
T ss_pred HHHHHHHHHHcCCceEEEEEecCcc
Confidence 9999999999999999999999986
No 15
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=99.89 E-value=2.9e-23 Score=169.11 Aligned_cols=92 Identities=29% Similarity=0.607 Sum_probs=83.3
Q ss_pred ccccccceeeeeeecCCCCCCC-CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCC-CCCCeeeeccceeeeeeec
Q psy5813 55 DIHRYLDFMNILSYDYHSAFEP-AVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGA-DPDKLVLGIPTYGRSYTLF 132 (226)
Q Consensus 55 d~~~~~D~v~vMtYD~~g~w~~-~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gv-p~~KlvlGip~Yg~~~~~~ 132 (226)
.+.++||||+|||||+||+|.. .++|+||+. +++++|++|+..|+ |++||+||||+|||.|
T Consensus 150 ~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~~~--------------~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w--- 212 (253)
T cd06545 150 STLAYFDFINIMSYDATGPWWGDNPGQHSSYD--------------DAVNDLNYWNERGLASKDKLVLGLPFYGYGF--- 212 (253)
T ss_pred HHHhhCCEEEEEcCcCCCCCCCCCCCCCCchH--------------hHHHHHHHHHHcCCCCHHHEEEEeCCccccc---
Confidence 3478999999999999999964 579999875 78899999999998 9999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEeecCCCceeeEEEeCCEEEEeCCHHHHHHHHHHHHHc
Q psy5813 133 NPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQ 212 (226)
Q Consensus 133 ~~~~~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~~~~~~~i~ydd~~Si~~K~~~~~~~ 212 (226)
+|+.+.++..|+++++++
T Consensus 213 --------------------------------------------------------------~~~~~~~~~~~~~~~~~~ 230 (253)
T cd06545 213 --------------------------------------------------------------YYNGIPTIRNKVAFAKQN 230 (253)
T ss_pred --------------------------------------------------------------cCCCHHHHHHHHHHHHHh
Confidence 577788999999999999
Q ss_pred CCceEEEeeccCCC
Q psy5813 213 KLGGIMFWSIDNDD 226 (226)
Q Consensus 213 glgGv~~W~l~~DD 226 (226)
+||+|+|++++|.
T Consensus 231 -~gG~~~w~~~~d~ 243 (253)
T cd06545 231 -YGGVMIWELSQDA 243 (253)
T ss_pred -cCeEEEEeccCCC
Confidence 9999999999983
No 16
>KOG2091|consensus
Probab=99.65 E-value=1e-15 Score=123.29 Aligned_cols=130 Identities=21% Similarity=0.336 Sum_probs=102.5
Q ss_pred ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceeeeeeecCCCC
Q psy5813 57 HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRSYTLFNPES 136 (226)
Q Consensus 57 ~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~~~~~~~~~~ 136 (226)
.+.+|.+.|||||+.+. ..+|++||+. +|+.+|..+.-...-+.||.|||-|||..|...+
T Consensus 250 ~~~~d~fsLmTYd~s~~--~~pg~nap~~--------------wi~~~l~~l~~~s~~r~KiLlGlNFYG~d~~~gd--- 310 (392)
T KOG2091|consen 250 VAVYDGFSLMTYDYSLV--QGPGPNAPLE--------------WIRHCLHHLGGSSAKRPKILLGLNFYGNDFNLGD--- 310 (392)
T ss_pred HHhhhheeEEEeecccc--cCCCCCCCHH--------------HHHHHHHHhCCccccccceeEeeeccccccccCC---
Confidence 78899999999999864 3579999997 8999999886555567999999999999997411
Q ss_pred CCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEeecCCCceeeEEEe----CCEEEEeCCHHHHHHHHHHHHHc
Q psy5813 137 NQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFK----GNQWVGYDDQEIAKDKAKYVNDQ 212 (226)
Q Consensus 137 ~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~~d~~~~~~y~~~----~~~~i~ydd~~Si~~K~~~~~~~ 212 (226)
| .+.++.......++.+.-...|+.+..+.-|.|. +++.|.|.+..||..++++|++.
T Consensus 311 --------g----------~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~~k~n~~gkhivfyPTL~Sl~~Ri~lA~~~ 372 (392)
T KOG2091|consen 311 --------G----------GEAITAKRYLQLLKGEKSVFKFDEESKEHFFEYKRNDDGKHIVFYPTLTSLELRIELAREL 372 (392)
T ss_pred --------C----------CCceeHHHHHHHHhccCcceeeccccchhheeeeccCCCceEEEecchHhHHHHHHHHHHh
Confidence 0 1125555666667776656666434445567774 37999999999999999999999
Q ss_pred CCceEEEeeccC
Q psy5813 213 KLGGIMFWSIDN 224 (226)
Q Consensus 213 glgGv~~W~l~~ 224 (226)
|. ||+||+++|
T Consensus 373 gv-gISIWe~Gq 383 (392)
T KOG2091|consen 373 GV-GISIWEYGQ 383 (392)
T ss_pred CC-ceEeeeccC
Confidence 99 999999987
No 17
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.02 E-value=2.8e-10 Score=89.96 Aligned_cols=25 Identities=44% Similarity=0.897 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHcCCceEEEeeccCC
Q psy5813 201 IAKDKAKYVNDQKLGGIMFWSIDND 225 (226)
Q Consensus 201 Si~~K~~~~~~~glgGv~~W~l~~D 225 (226)
|++.|++|+++++|||+|+|++++|
T Consensus 186 s~~~k~~~~~~~~~gGv~~w~~~~d 210 (210)
T cd00598 186 SLGAKAKYAKQKGLGGVMIWELDQD 210 (210)
T ss_pred hHHHHHHHHHHcCCceEEEEeccCC
Confidence 9999999999999999999999987
No 18
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=98.29 E-value=8.7e-07 Score=72.08 Aligned_cols=54 Identities=15% Similarity=0.206 Sum_probs=39.5
Q ss_pred ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceeeeee
Q psy5813 57 HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRSYT 130 (226)
Q Consensus 57 ~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~~~~ 130 (226)
++++|+|++|+||+++.+.+. .. . ...+..+.|. +++|++||++|+|.+++.|.
T Consensus 169 ~~~~d~id~~~~qfy~~~~~~--~~---------------~--~~~~~~~~~~-~~~p~~Kv~lGl~a~~~~~~ 222 (253)
T cd06544 169 NAYGDYIDYVNYQFYNYGVPT--TV---------------A--KYVEFYDEVA-NNYPGKKVLASFSTDGEDGA 222 (253)
T ss_pred HHhhCceeEEEhhhhCCCCCC--CH---------------H--HHHHHHHHHH-hCCCcccEEEEEecCCCccC
Confidence 899999999999999875321 00 0 1224445554 46999999999999998774
No 19
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=98.27 E-value=3.9e-06 Score=70.55 Aligned_cols=56 Identities=18% Similarity=0.225 Sum_probs=34.8
Q ss_pred ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcC-----------CCCCCeeeeccce
Q psy5813 57 HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSG-----------ADPDKLVLGIPTY 125 (226)
Q Consensus 57 ~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~g-----------vp~~KlvlGip~Y 125 (226)
.+++|||+||.||.++.+.- . +..... .......++...+.++ +|++||+||+|..
T Consensus 182 ~~~~D~invqfYn~~~~~~~----~-~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 182 RDDLTWLNVQYYNSGGMGGC----D-GQSYSQ--------GTADFLVALADMLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred hhheeEEEEeeccCCCcccc----c-ccCCcc--------chhHHHHHHHHHHHcCCCccCCcccccCChhhEEEeccCC
Confidence 67999999999998875411 0 111000 1112334444455555 8999999999974
No 20
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=97.64 E-value=2.3e-05 Score=66.85 Aligned_cols=45 Identities=27% Similarity=0.643 Sum_probs=38.7
Q ss_pred CChhhhcccccEEeeeeeeccCCCCCCCCCCCCCCCCcccCCccc
Q psy5813 1 MKVKKKNTYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNF 45 (226)
Q Consensus 1 ~~~~~~~~~lDfin~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~ 45 (226)
|+..++.++|||||+|+|||||.|...++||++++....+++..-
T Consensus 234 ~~~~~~~~~vDyiNiMTYDf~G~Wn~~~Gh~a~Ly~~~~d~~~~~ 278 (441)
T COG3325 234 LNHAEIAQYVDYINIMTYDFHGAWNETLGHHAALYGTPKDPPLAN 278 (441)
T ss_pred ccHHHHHHHHhhhheeeeecccccccccccccccccCCCCCcccc
Confidence 577889999999999999999999999999999997666554433
No 21
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=97.47 E-value=0.00088 Score=55.39 Aligned_cols=51 Identities=20% Similarity=0.316 Sum_probs=31.5
Q ss_pred ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCC---CCeeeecccee
Q psy5813 57 HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP---DKLVLGIPTYG 126 (226)
Q Consensus 57 ~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~---~KlvlGip~Yg 126 (226)
..++|||+||.||..+- ....+.++ ......+.|... ++. .||+||+|..-
T Consensus 177 ~~~~D~i~vqfYn~~~c-~~~~~~~~-----------------~~~~~~~~w~~~-~~~~~~~kv~lGlpas~ 230 (280)
T cd02877 177 TGLFDFIFVQFYNNPCC-SYASGNAS-----------------GFNFNWDTWTSW-AKATSNAKVFLGLPASP 230 (280)
T ss_pred cCccCEEEEEEecCccc-cccccccc-----------------hhhhHHHHHHHh-cccCCCceEEEecccCC
Confidence 35999999999996431 10001111 222455666654 665 89999999753
No 22
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=97.36 E-value=0.00023 Score=57.98 Aligned_cols=46 Identities=15% Similarity=0.262 Sum_probs=31.9
Q ss_pred ccccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccceee
Q psy5813 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGR 127 (226)
Q Consensus 55 d~~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~Yg~ 127 (226)
++++++||+++|+||.++. .... .+ .....|+|++|+++|+++++.
T Consensus 163 ~~~~~vDyv~~~~y~~~~~---~~~~---~~---------------------~~~~~g~~~~k~i~~~~~~~~ 208 (255)
T cd06542 163 EVSPYVDYVIYQYYGSSSS---STQR---NW---------------------NTNSPKIPPEKMVYTESFEEE 208 (255)
T ss_pred HHHHhCCEEEeeccCCCCc---cCCc---cc---------------------ccccCCCCHHHceeeeeeecc
Confidence 4589999999999985432 2111 11 012358999999999999963
No 23
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=96.69 E-value=0.0015 Score=55.10 Aligned_cols=38 Identities=37% Similarity=0.793 Sum_probs=33.7
Q ss_pred ChhhhcccccEEeeeeeeccCCCCCCCCCCCCCCCCcc
Q psy5813 2 KVKKKNTYLDFMNILSYDYHSAFEPAVNHHSPLFPLEE 39 (226)
Q Consensus 2 ~~~~~~~~lDfin~~~~d~~~~~~~~~~~~~~l~~~~~ 39 (226)
+++++.+++||+|+|+||+|+.|+..+.+++|++....
T Consensus 193 ~~~~l~~~vD~vnlMtYD~~g~w~~~~g~~spL~~~~~ 230 (322)
T cd06548 193 EVAEIAKYLDFINLMTYDFHGAWSNTTGHHSNLYASPA 230 (322)
T ss_pred CHHHHhhcCCEEEEEEeeccCCCCCCCCCCCCCCCCCC
Confidence 57889999999999999999999988999999875443
No 24
>KOG2806|consensus
Probab=96.55 E-value=0.0017 Score=57.08 Aligned_cols=37 Identities=32% Similarity=0.599 Sum_probs=33.7
Q ss_pred ChhhhcccccEEeeeeeeccCCCCC--CCCCCCCCCCCc
Q psy5813 2 KVKKKNTYLDFMNILSYDYHSAFEP--AVNHHSPLFPLE 38 (226)
Q Consensus 2 ~~~~~~~~lDfin~~~~d~~~~~~~--~~~~~~~l~~~~ 38 (226)
|++++.+++||||||+|||+|.|+. .+++++|++...
T Consensus 226 di~~i~~~~DfiNi~syDf~gpw~~~~~tGp~aPl~~~~ 264 (432)
T KOG2806|consen 226 DYENLSKYVDFINIMSYDYYGPWSLPCFTGPPSPLYKGP 264 (432)
T ss_pred CHHHHHhhCCeEEEecccccCCCcCCCcCCCCcccCCCC
Confidence 7899999999999999999999999 689999988654
No 25
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=96.34 E-value=0.0043 Score=50.71 Aligned_cols=43 Identities=26% Similarity=0.442 Sum_probs=30.9
Q ss_pred ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCCCCeeeeccc
Q psy5813 57 HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPT 124 (226)
Q Consensus 57 ~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~KlvlGip~ 124 (226)
..++||+|+|.||.+|.-. + . .....|+..++|++||+||+|.
T Consensus 175 ~~~~Df~nvQfYn~~g~~~------~------------------~-~~~~~~~~~~~~~~Kv~iGlpa 217 (256)
T cd06546 175 GDKIDFYNAQFYNGFGSMS------S------------------P-SDYDAIVAQGWDPERIVIGLLT 217 (256)
T ss_pred CCceeEEEEcCcCCCCCcc------C------------------H-HHHHHHHHcCCCcccEEEEEec
Confidence 4589999999999865421 0 0 1233455668999999999994
No 26
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=96.20 E-value=0.004 Score=52.05 Aligned_cols=35 Identities=26% Similarity=0.606 Sum_probs=29.5
Q ss_pred ChhhhcccccEEeeeeeeccCCCCCC-CCCCCCCCC
Q psy5813 2 KVKKKNTYLDFMNILSYDYHSAFEPA-VNHHSPLFP 36 (226)
Q Consensus 2 ~~~~~~~~lDfin~~~~d~~~~~~~~-~~~~~~l~~ 36 (226)
|++++.+++||||+|+||+|+.|+.. ..++++++.
T Consensus 173 d~~~l~~~vD~i~vMtYD~~g~~~~~~~~~~a~l~~ 208 (299)
T cd02879 173 PIEAINKNLDWVNVMAYDYYGSWESNTTGPAAALYD 208 (299)
T ss_pred CHHHHHhhCCEEEEEeecccCCCCCCCCCCCCcCCC
Confidence 56889999999999999999999875 567777764
No 27
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=96.20 E-value=0.0042 Score=54.32 Aligned_cols=36 Identities=19% Similarity=0.481 Sum_probs=31.0
Q ss_pred ChhhhcccccEEeeeeeeccCCCCC--CCCCCCCCCCC
Q psy5813 2 KVKKKNTYLDFMNILSYDYHSAFEP--AVNHHSPLFPL 37 (226)
Q Consensus 2 ~~~~~~~~lDfin~~~~d~~~~~~~--~~~~~~~l~~~ 37 (226)
|++++.+++||||+|+||+|+.+.. .+.+++|++..
T Consensus 204 d~~~l~~~vD~inlMtYD~~g~~~~~~~~~~~apL~~~ 241 (413)
T cd02873 204 DVPAIANNVDFVNLATFDFLTPERNPEEADYTAPIYEL 241 (413)
T ss_pred CHHHHhhcCCEEEEEEecccCCCCCCCccCcCCccCCC
Confidence 7889999999999999999998765 36888998754
No 28
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=95.93 E-value=0.0059 Score=52.37 Aligned_cols=38 Identities=34% Similarity=0.822 Sum_probs=33.5
Q ss_pred ChhhhcccccEEeeeeeeccCCCCCCCCCCCCCCCCcc
Q psy5813 2 KVKKKNTYLDFMNILSYDYHSAFEPAVNHHSPLFPLEE 39 (226)
Q Consensus 2 ~~~~~~~~lDfin~~~~d~~~~~~~~~~~~~~l~~~~~ 39 (226)
|++++.+++||+|+|+||+|+.|...+.+++|++....
T Consensus 172 d~~~l~~~vD~v~vmtYD~~~~~~~~~g~~spl~~~~~ 209 (362)
T cd02872 172 DIPEISKYLDFINVMTYDFHGSWEGVTGHNSPLYAGSA 209 (362)
T ss_pred CHHHHhhhcceEEEecccCCCCCCCCCCCCCCCCCCCC
Confidence 67899999999999999999999888899999875444
No 29
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=95.68 E-value=0.009 Score=51.00 Aligned_cols=32 Identities=25% Similarity=0.595 Sum_probs=27.8
Q ss_pred ChhhhcccccEEeeeeeeccCCCCCCCCCCCC
Q psy5813 2 KVKKKNTYLDFMNILSYDYHSAFEPAVNHHSP 33 (226)
Q Consensus 2 ~~~~~~~~lDfin~~~~d~~~~~~~~~~~~~~ 33 (226)
|++++.+++||+|+|+||+|+.|+..+.+++|
T Consensus 169 d~~~l~~~vD~i~vMtYD~~g~w~~~~~~~~p 200 (345)
T cd02878 169 PIKDMAKYVDYIVYMTYDLHGQWDYGNKWASP 200 (345)
T ss_pred cHHHHHhhCcEEEEEeecccCCcCccCCcCCC
Confidence 67889999999999999999999877666655
No 30
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=95.34 E-value=0.013 Score=49.32 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=27.3
Q ss_pred ChhhhcccccEEeeeeeeccCCCCCCCCCCCCCC
Q psy5813 2 KVKKKNTYLDFMNILSYDYHSAFEPAVNHHSPLF 35 (226)
Q Consensus 2 ~~~~~~~~lDfin~~~~d~~~~~~~~~~~~~~l~ 35 (226)
|++++.+++||+|+|+||+|+. ..+++++|+.
T Consensus 171 d~~~l~~~vD~v~lMtYD~~~~--~~~g~~apl~ 202 (318)
T cd02876 171 DFEKLAPHVDGFSLMTYDYSSP--QRPGPNAPLS 202 (318)
T ss_pred CHHHHHhhccEEEEEeeccCCC--CCCCCCCCcH
Confidence 6789999999999999999987 5567777764
No 31
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=94.94 E-value=0.021 Score=48.32 Aligned_cols=37 Identities=32% Similarity=0.766 Sum_probs=31.9
Q ss_pred hhhhcccccEEeeeeeeccCCCCCCCCCCCCCCCCcc
Q psy5813 3 VKKKNTYLDFMNILSYDYHSAFEPAVNHHSPLFPLEE 39 (226)
Q Consensus 3 ~~~~~~~lDfin~~~~d~~~~~~~~~~~~~~l~~~~~ 39 (226)
++++.+++||+++|+||+|+.|+..+.+++|++....
T Consensus 169 ~~~l~~~vD~v~vm~YD~~~~~~~~~g~~spl~~~~~ 205 (334)
T smart00636 169 LPAIAKYLDFINLMTYDFHGAWSNPTGHNAPLYAGPG 205 (334)
T ss_pred HHHHHhhCcEEEEeeeccCCCCCCCCCCCCcCCCCCC
Confidence 4889999999999999999998888889999875443
No 32
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=93.44 E-value=0.067 Score=45.94 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=24.8
Q ss_pred ChhhhcccccEEeeeeeeccCC-CCC--CCCCCCCC
Q psy5813 2 KVKKKNTYLDFMNILSYDYHSA-FEP--AVNHHSPL 34 (226)
Q Consensus 2 ~~~~~~~~lDfin~~~~d~~~~-~~~--~~~~~~~l 34 (226)
|++++.+++||+|+|+||+|+. |+. ...+++|+
T Consensus 171 d~~~l~~~vD~v~lMtYD~h~~~w~~~~~~g~~ap~ 206 (358)
T cd02875 171 DYTGIADASDFLVVMDYDEQSQIWGKECIAGANSPY 206 (358)
T ss_pred CHHHHHhhCCEeeEEeecccCCCCCCCCCCCCCCCc
Confidence 6889999999999999999974 542 23444543
No 33
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=91.43 E-value=0.1 Score=44.00 Aligned_cols=37 Identities=27% Similarity=0.714 Sum_probs=31.0
Q ss_pred ChhhhcccccEEeeeeeeccCCCCCCCCCCCCCCCCc
Q psy5813 2 KVKKKNTYLDFMNILSYDYHSAFEPAVNHHSPLFPLE 38 (226)
Q Consensus 2 ~~~~~~~~lDfin~~~~d~~~~~~~~~~~~~~l~~~~ 38 (226)
+++++.+++|||++|+||+++.++..+.++++++...
T Consensus 176 ~~~~l~~~vD~v~~m~yD~~~~~~~~~~~~~~l~~~~ 212 (343)
T PF00704_consen 176 DYKELAQYVDYVNLMTYDYHGPWSDVTGPNAPLYDSS 212 (343)
T ss_dssp HHHHHHTTSSEEEEETTSSSSTTSSBETTSSSSSHTT
T ss_pred ccccccccccccccccccCCCCcccccccccccccCC
Confidence 4678899999999999999998888778888876444
No 34
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=91.14 E-value=0.19 Score=42.21 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=24.1
Q ss_pred ChhhhcccccEEeeeeeeccCCCCCCCCCCCC
Q psy5813 2 KVKKKNTYLDFMNILSYDYHSAFEPAVNHHSP 33 (226)
Q Consensus 2 ~~~~~~~~lDfin~~~~d~~~~~~~~~~~~~~ 33 (226)
|++++.+++||+++|+||+|+.+. ....+++
T Consensus 161 ~~~~l~~~vD~v~lm~YD~~~~~~-~~gp~a~ 191 (313)
T cd02874 161 DYAAIGKIVDFVVLMTYDWHWRGG-PPGPVAP 191 (313)
T ss_pred CHHHHHhhCCEEEEEEeccCCCCC-CCCccCC
Confidence 568899999999999999998753 2344444
No 35
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=89.73 E-value=0.14 Score=42.76 Aligned_cols=30 Identities=20% Similarity=0.547 Sum_probs=24.8
Q ss_pred EEEeCCHHHHHHHHHHHHHcCCceEEEeeccCC
Q psy5813 193 WVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225 (226)
Q Consensus 193 ~i~ydd~~Si~~K~~~~~~~glgGv~~W~l~~D 225 (226)
..+-+|.+.+ .+||+++|||++.+|+++-|
T Consensus 236 ~ft~~da~~~---~~fA~~~~l~~~s~Ws~~RD 265 (294)
T cd06543 236 VFTLADAQTL---VDFAKEKGLGRLSMWSLNRD 265 (294)
T ss_pred eeeHHHHHHH---HHHHHhCCCCeEeeeeccCC
Confidence 4556777665 68899999999999999876
No 36
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=89.35 E-value=0.29 Score=39.79 Aligned_cols=30 Identities=33% Similarity=0.574 Sum_probs=22.8
Q ss_pred hhhcccccEEeeeeeeccCCCCCC-CCCCCC
Q psy5813 4 KKKNTYLDFMNILSYDYHSAFEPA-VNHHSP 33 (226)
Q Consensus 4 ~~~~~~lDfin~~~~d~~~~~~~~-~~~~~~ 33 (226)
.+..+++||+|+|+||+++.|... ..++++
T Consensus 149 ~~~~~~vD~i~vMtYD~~g~~~~~~~g~~a~ 179 (253)
T cd06545 149 DSTLAYFDFINIMSYDATGPWWGDNPGQHSS 179 (253)
T ss_pred HHHHhhCCEEEEEcCcCCCCCCCCCCCCCCc
Confidence 355789999999999999887643 445554
No 37
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=87.17 E-value=0.56 Score=39.15 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=20.6
Q ss_pred ChhhhcccccEEeeeeeeccCCC
Q psy5813 2 KVKKKNTYLDFMNILSYDYHSAF 24 (226)
Q Consensus 2 ~~~~~~~~lDfin~~~~d~~~~~ 24 (226)
|++++.+++||+++|+||+|+..
T Consensus 153 d~~~l~~~~D~v~lMtYD~~~~~ 175 (298)
T cd06549 153 NLKALARNADKLILMAYDEHYQG 175 (298)
T ss_pred CHHHHHHhCCEEEEEEeccCCCC
Confidence 67889999999999999999754
No 38
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=79.53 E-value=1 Score=31.79 Aligned_cols=28 Identities=29% Similarity=0.551 Sum_probs=18.0
Q ss_pred HHHHHHHHcCCCCCCeeeec-cceeeeee
Q psy5813 103 HTIKHYLKSGADPDKLVLGI-PTYGRSYT 130 (226)
Q Consensus 103 ~~v~~~~~~gvp~~KlvlGi-p~Yg~~~~ 130 (226)
...+.++++|||++.||||. |-+-|.++
T Consensus 78 gIa~eLve~GVpk~dIVLgF~~P~~R~~T 106 (111)
T PF08869_consen 78 GIAEELVEAGVPKEDIVLGFHPPEVRQYT 106 (111)
T ss_dssp HHHHHHHHTT--GGGEEETTS-GGGGCCS
T ss_pred HHHHHHHHcCCCHHHEEEccCCccccccc
Confidence 34568899999999999996 33444443
No 39
>KOG1552|consensus
Probab=72.06 E-value=8 Score=31.52 Aligned_cols=51 Identities=25% Similarity=0.418 Sum_probs=30.0
Q ss_pred eeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHH-cCCCCCCeeeeccceeeee
Q psy5813 62 FMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLK-SGADPDKLVLGIPTYGRSY 129 (226)
Q Consensus 62 ~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~-~gvp~~KlvlGip~Yg~~~ 129 (226)
.+|||+|||.|. ....|-++-.. ....++.+.+.+.. .| +.++|+| ||++-
T Consensus 88 n~nv~~~DYSGy-G~S~G~psE~n-----------~y~Di~avye~Lr~~~g-~~~~Iil----~G~Si 139 (258)
T KOG1552|consen 88 NCNVVSYDYSGY-GRSSGKPSERN-----------LYADIKAVYEWLRNRYG-SPERIIL----YGQSI 139 (258)
T ss_pred cceEEEEecccc-cccCCCccccc-----------chhhHHHHHHHHHhhcC-CCceEEE----EEecC
Confidence 689999999885 22234344321 12245555555543 34 8888876 77653
No 40
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=69.99 E-value=6.4 Score=32.86 Aligned_cols=22 Identities=32% Similarity=0.501 Sum_probs=17.4
Q ss_pred ccccc---cc----ccceeeeeeecCCCC
Q psy5813 52 VSYDI---HR----YLDFMNILSYDYHSA 73 (226)
Q Consensus 52 ~~yd~---~~----~~D~v~vMtYD~~g~ 73 (226)
.+|++ ++ .+|+||||||||++.
T Consensus 156 ~g~~~l~~a~~~Gv~~d~VNiMtmDyg~~ 184 (294)
T cd06543 156 DGLNVLEAAAANGVDLDTVNIMTMDYGSS 184 (294)
T ss_pred hHHHHHHHHHHcCCCcceeeeeeecCCCC
Confidence 45555 55 899999999999864
No 41
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=63.31 E-value=9.6 Score=31.08 Aligned_cols=27 Identities=15% Similarity=0.420 Sum_probs=20.6
Q ss_pred eCCHHHHHHHHHHHHHc--CCceEEEeec
Q psy5813 196 YDDQEIAKDKAKYVNDQ--KLGGIMFWSI 222 (226)
Q Consensus 196 ydd~~Si~~K~~~~~~~--glgGv~~W~l 222 (226)
|=++..+...+.-++++ .+||||+|+-
T Consensus 225 yv~~~~l~~~v~~l~~~~~~~gGvm~W~~ 253 (256)
T cd06546 225 FVPFDTLSSTLSTLRQRYPNFGGVMGWEY 253 (256)
T ss_pred ccCHHHHHHHHHHHHHhCCCCceEEEecc
Confidence 66788888777666543 7999999974
No 42
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=62.46 E-value=5.3 Score=32.51 Aligned_cols=59 Identities=17% Similarity=0.286 Sum_probs=36.2
Q ss_pred cccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHH----------cCCCCCCeeeeccc
Q psy5813 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLK----------SGADPDKLVLGIPT 124 (226)
Q Consensus 56 ~~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~----------~gvp~~KlvlGip~ 124 (226)
+..+.|||...-|..-|.-...+..+++.-... .-+.+...+++. ..+|++|+++|+|.
T Consensus 198 l~~~yD~i~pQlYNqGGdg~w~~~~nawi~q~n----------d~~kesfly~~~~slanGtr~f~~ipa~k~aiGLPs 266 (332)
T COG3469 198 LRDYYDFIAPQLYNQGGDGNWVTESNAWIAQNN----------DMVKESFLYYLTFSLANGTRGFEKIPADKFAIGLPS 266 (332)
T ss_pred HhhHHhhhhHHHhcCCCCCCCcCcccccccccc----------HHHHHhHHHHhhhhhhcCcccceecccceeEEecCC
Confidence 378899999999988764333334445443211 123344444432 24799999999995
No 43
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=47.82 E-value=19 Score=17.79 Aligned_cols=21 Identities=19% Similarity=0.496 Sum_probs=17.5
Q ss_pred EEEeCCHHHHHHHHHHHHHcCC
Q psy5813 193 WVGYDDQEIAKDKAKYVNDQKL 214 (226)
Q Consensus 193 ~i~ydd~~Si~~K~~~~~~~gl 214 (226)
++.++ .++++.|+++.++.|+
T Consensus 10 il~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 10 ILGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred ccccc-HHHhhHHHHHHHHcCC
Confidence 45677 9999999999998775
No 44
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=47.53 E-value=24 Score=30.12 Aligned_cols=28 Identities=18% Similarity=0.450 Sum_probs=24.5
Q ss_pred EeCCHHHHHHHHHHHHHcCCceEEEeec
Q psy5813 195 GYDDQEIAKDKAKYVNDQKLGGIMFWSI 222 (226)
Q Consensus 195 ~ydd~~Si~~K~~~~~~~glgGv~~W~l 222 (226)
--.|++.++..+++|+++|+-|+.+|.-
T Consensus 53 dl~~p~v~~~Q~~lA~~~GI~gF~~~~Y 80 (345)
T PF14307_consen 53 DLRDPEVMEKQAELAKEYGIDGFCFYHY 80 (345)
T ss_pred cCCCHHHHHHHHHHHHHhCCCEEEEEee
Confidence 3458999999999999999999999853
No 45
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=39.64 E-value=33 Score=28.90 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=33.2
Q ss_pred ccccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCC-CCeeeeccceee
Q psy5813 57 HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP-DKLVLGIPTYGR 127 (226)
Q Consensus 57 ~~~~D~v~vMtYD~~g~w~~~~g~~apl~~~~~~~~~~~~~~~~v~~~v~~~~~~gvp~-~KlvlGip~Yg~ 127 (226)
..++|+|..|.|-.. .....+ .++..+..|.+.-.+. -+|.+|+++|-.
T Consensus 250 ~G~iD~i~Pq~Y~~~-----~~~~~~-----------------~~~~~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 250 EGYIDYIVPQIYWSD-----FSHFTA-----------------PYEQLAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred cCCccEEEeeecccc-----cchhHH-----------------HHHHHHHHHHHhhcCCCceEEEccCcCCC
Confidence 678999999999531 111112 4567777787764443 499999999864
No 46
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=27.26 E-value=57 Score=23.58 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=17.4
Q ss_pred HHHHHHHHcCCCCCCeeeecccee
Q psy5813 103 HTIKHYLKSGADPDKLVLGIPTYG 126 (226)
Q Consensus 103 ~~v~~~~~~gvp~~KlvlGip~Yg 126 (226)
..+..+++. -.+++||+|+|.--
T Consensus 38 ~~l~~~i~~-~~~~~iVvGlP~~~ 60 (130)
T TIGR00250 38 SRIEELLKE-WTPDKIVVGLPLNM 60 (130)
T ss_pred HHHHHHHHH-cCCCEEEEeccCCC
Confidence 556666665 66799999999853
No 47
>PF07293 DUF1450: Protein of unknown function (DUF1450); InterPro: IPR009910 This entry consists of several hypothetical bacterial proteins of around 80 residues in length representing two families. Members contain four highly conserved cysteine residues and their function is unknown.
Probab=22.36 E-value=2.4e+02 Score=18.52 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=27.0
Q ss_pred CCceeeEEEeCCEEEEeCCHHHHHHHH-HHHHHc
Q psy5813 180 PRAMGPYAFKGNQWVGYDDQEIAKDKA-KYVNDQ 212 (226)
Q Consensus 180 ~~~~~~y~~~~~~~i~ydd~~Si~~K~-~~~~~~ 212 (226)
.....||++-++.+|.=++++.+..|+ +.+++.
T Consensus 42 ~C~~~pFAlVnG~~V~A~t~eeL~~kI~~~i~e~ 75 (78)
T PF07293_consen 42 PCAKKPFALVNGEIVAAETAEELLEKIKEKIEEN 75 (78)
T ss_pred CCCCCccEEECCEEEecCCHHHHHHHHHHHHhcc
Confidence 466789999999999999999999996 444443
No 48
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=22.12 E-value=56 Score=27.52 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=16.6
Q ss_pred HHHHHHHHHcCCCCCCeeeec
Q psy5813 102 DHTIKHYLKSGADPDKLVLGI 122 (226)
Q Consensus 102 ~~~v~~~~~~gvp~~KlvlGi 122 (226)
.+.++.+.+.|++++|++||=
T Consensus 170 ~e~~~il~e~Gv~~~rvvigH 190 (308)
T PF02126_consen 170 LEQLDILEEEGVDPSRVVIGH 190 (308)
T ss_dssp HHHHHHHHHTT--GGGEEETS
T ss_pred HHHHHHHHHcCCChhHeEEeC
Confidence 477889999999999999983
No 49
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=21.89 E-value=80 Score=23.07 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCCCCCeeeecccee
Q psy5813 103 HTIKHYLKSGADPDKLVLGIPTYG 126 (226)
Q Consensus 103 ~~v~~~~~~gvp~~KlvlGip~Yg 126 (226)
..+..+++. -++++||+|+|.--
T Consensus 44 ~~l~~~i~~-~~i~~iVvGlP~~~ 66 (138)
T PRK00109 44 DRLEKLIKE-WQPDGLVVGLPLNM 66 (138)
T ss_pred HHHHHHHHH-hCCCEEEEeccCCC
Confidence 445555554 56799999999854
No 50
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=21.51 E-value=1e+02 Score=25.52 Aligned_cols=23 Identities=17% Similarity=0.400 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCceEEEeecc
Q psy5813 200 EIAKDKAKYVNDQKLGGIMFWSID 223 (226)
Q Consensus 200 ~Si~~K~~~~~~~glgGv~~W~l~ 223 (226)
.-|.+=++|+|++|+ ||.+|.-.
T Consensus 73 ~dl~elv~Ya~~KgV-gi~lw~~~ 95 (273)
T PF10566_consen 73 FDLPELVDYAKEKGV-GIWLWYHS 95 (273)
T ss_dssp --HHHHHHHHHHTT--EEEEEEEC
T ss_pred cCHHHHHHHHHHcCC-CEEEEEeC
Confidence 567788999999999 99999643
No 51
>COG4333 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.41 E-value=97 Score=22.92 Aligned_cols=25 Identities=12% Similarity=0.251 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHcCCceEEEee
Q psy5813 197 DDQEIAKDKAKYVNDQKLGGIMFWS 221 (226)
Q Consensus 197 dd~~Si~~K~~~~~~~glgGv~~W~ 221 (226)
-|-+++..-..+|+..|.||+.+=.
T Consensus 53 ~Dd~Ti~rci~fA~swgyGgvy~~N 77 (167)
T COG4333 53 KDDRTLSRCISFAKSWGYGGVYMAN 77 (167)
T ss_pred hcchHHHHHHHHHhhcccCcEEeee
Confidence 4567899999999999999987643
No 52
>TIGR03601 B_an_ocin probable heterocycle-containing bacteriocin, BA_2677 family. Numerous bacteria encode systems for producing bacteriocins by extensive modification of ribosomally produced precursors. These proteins are recognizable in part by proximity to the modification proteins, and in part by small size, with leader peptide-like N-terminal sequence followed by low-complexity sequence rich in Cys, Gly, and/or Ser. This protein family represents a probable member of the class, though previously unrecognized because it is not encoded adjacent to its modification proteins.
Probab=21.27 E-value=97 Score=19.75 Aligned_cols=15 Identities=20% Similarity=0.261 Sum_probs=12.3
Q ss_pred eEeecCCCceeeEEE
Q psy5813 174 SVEHPNPRAMGPYAF 188 (226)
Q Consensus 174 ~~~~~d~~~~~~y~~ 188 (226)
.+++||...+-||.|
T Consensus 20 nvvyWDqqnqypyyy 34 (79)
T TIGR03601 20 NVVYWDQQNQYPYYY 34 (79)
T ss_pred cEEEeccccCCccee
Confidence 567889888999887
No 53
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=20.89 E-value=6e+02 Score=22.65 Aligned_cols=98 Identities=19% Similarity=0.377 Sum_probs=59.4
Q ss_pred HHHHHHHHHHcC---CCCCCeeeeccceeeeeeecCCCCCCCCCCCCCCCCCCCCCCCCcceeHHHHHhhcCCCCceEee
Q psy5813 101 IDHTIKHYLKSG---ADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSVEH 177 (226)
Q Consensus 101 v~~~v~~~~~~g---vp~~KlvlGip~Yg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~y~~i~~~~~~~~~~~~~ 177 (226)
|...++.|...+ -|.-.|+||-|-=|.++-+ |. ++-| ++... ..+...++-
T Consensus 108 Vk~~l~~W~~~~~~~~~~p~vlIGTPGIGKS~~~------------------GS------~LLy-qLLHy-~~~~L~vVa 161 (439)
T PF07999_consen 108 VKRDLDRWLSGRGERDPRPFVLIGTPGIGKSFGT------------------GS------YLLY-QLLHY-DAEKLPVVA 161 (439)
T ss_pred HHHHHHHHhccCCCCCCCceEEEecCCcCccccc------------------hh------hhhh-hhhcC-ChhhccEEE
Confidence 677788888642 2556699999988887652 00 1222 33221 111112221
Q ss_pred cCCCceeeEEEeC------CEEEEeCCHHHHHHHHHHHHHcCCceEEEeeccCC
Q psy5813 178 PNPRAMGPYAFKG------NQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225 (226)
Q Consensus 178 ~d~~~~~~y~~~~------~~~i~ydd~~Si~~K~~~~~~~glgGv~~W~l~~D 225 (226)
+- .....|++.. +..+-|.+.......++-....|..|..|.+++.+
T Consensus 162 Yf-v~~~aYif~k~~~~~~G~Vv~Y~~~~~a~~~i~~~~~~g~~GyiI~Dv~~~ 214 (439)
T PF07999_consen 162 YF-VGGEAYIFHKTGGGEAGRVVFYKDQEAAVSVINEMSSRGVKGYIIYDVAKK 214 (439)
T ss_pred EE-EeceEEEEEeccCCcCceEEEecCchHHHHHHHHHHhhCceEEEEEecccc
Confidence 11 1224465532 37889999887778887778899999999998754
Done!