RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5813
(226 letters)
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 228 bits (582), Expect = 3e-73
Identities = 70/177 (39%), Positives = 105/177 (59%), Gaps = 9/177 (5%)
Query: 53 SYD---IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
Y+ I + LDF+N+++YD+H ++E H+SPL+ +E+ A L++D ++ +L
Sbjct: 173 GYEVDKIAQNLDFVNLMAYDFHGSWEKVTGHNSPLYKRQEESGAA--ASLNVDAAVQQWL 230
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLK 169
+ G KL+LG+PTYGRS+TL + ++GAPA G G G T+E G LAYYE+C
Sbjct: 231 QKGTPASKLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVC---S 287
Query: 170 SDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ + PY F+ NQWVG+DD E K K Y+ + LGG M W++D DD
Sbjct: 288 WKGATKQR-IQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDD 343
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 225 bits (576), Expect = 7e-73
Identities = 67/177 (37%), Positives = 105/177 (59%), Gaps = 7/177 (3%)
Query: 53 SYDI---HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
Y+I +YLD++++++YD H ++E +SPL+ D N A L++D+ + ++
Sbjct: 173 GYEIPQLSQYLDYIHVMTYDLHGSWEGYTGENSPLYKYPTDTGSN--AYLNVDYVMNYWK 230
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLK 169
+GA +KL++G PTYG ++ L NP + IGAP G G G +E G AYYEIC+ LK
Sbjct: 231 DNGAPAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLK 290
Query: 170 SDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ + + PYA++GN WVGYD+ + KA+++ K GG M W+ID DD
Sbjct: 291 -NGATQGW-DAPQEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDD 345
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG
MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB:
2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A*
2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A*
2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 222 bits (569), Expect = 3e-72
Identities = 83/177 (46%), Positives = 110/177 (62%), Gaps = 10/177 (5%)
Query: 53 SYDI---HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
YDI R+LDF+++L+YD+H A+ V HHSPLF ED F + D+ + + L
Sbjct: 167 GYDIAQISRHLDFISLLTYDFHGAWRQTVGHHSPLFRGNEDASSRF---SNADYAVSYML 223
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLK 169
+ GA +KLV+GIPT+GRS+TL + +GAP GPG G T+EKG LAYYEIC L
Sbjct: 224 RLGAPANKLVMGIPTFGRSFTLASS-KTDVGAPVSGPGIPGRFTKEKGILAYYEICDFLH 282
Query: 170 SDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
H PYA KGNQWV YDDQE K+KA+Y+ +++L G M W++D DD
Sbjct: 283 GATT---HRFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDD 336
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural
plasticity, functional versatility, immune system; 1.31A
{Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 222 bits (568), Expect = 6e-72
Identities = 63/177 (35%), Positives = 96/177 (54%), Gaps = 7/177 (3%)
Query: 53 SYDI---HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
Y I + LD++ +++YD H + +SPL+ D + A L++D I ++
Sbjct: 173 GYKIPELSQSLDYIQVMTYDLHDPKDGYTGENSPLYKSPYDIGKS--ADLNVDSIISYWK 230
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLK 169
GA +KL++G P YG ++ L +P IGAP G G T E G LAYYE+C+ L
Sbjct: 231 DHGAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLN 290
Query: 170 SDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ E + PYA++GN+WVGYD+ K KA+++ D LGG + W +D DD
Sbjct: 291 EG--ATEVWDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDD 345
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 218 bits (558), Expect = 1e-70
Identities = 71/179 (39%), Positives = 104/179 (58%), Gaps = 11/179 (6%)
Query: 53 SYDI---HRYLDFMNILSYDYHSAFE--PAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKH 107
SY + + LDF+N+LS+D+H ++E H+SPL +D + + ++++ + +
Sbjct: 169 SYQVEKLAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPS--SYYNVEYAVGY 226
Query: 108 YLKSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSS 167
++ G +K+V+GIPTYG S+TL + +GAPA GPG G T G+LAYYEIC
Sbjct: 227 WIHKGMPSEKVVMGIPTYGHSFTLASA-ETTVGAPASGPGAAGPITESSGFLAYYEICQF 285
Query: 168 LKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
LK PYA KGNQWVGYDD + + K +++ + LGG M WSID DD
Sbjct: 286 LKGAKI---TRLQDQQVPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDD 341
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 212 bits (542), Expect = 3e-68
Identities = 48/180 (26%), Positives = 83/180 (46%), Gaps = 16/180 (8%)
Query: 52 VSYDI---HRYLDFMNILSYDYH--SAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIK 106
++Y + R LD++N+++YD++ + N H+ LF +S I
Sbjct: 165 LNYPVESLARNLDWINLMAYDFYGPNWSPSQTNSHAQLFDPVNH--------VSGSDGIN 216
Query: 107 HYLKSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICS 166
++++G KLVLGIP YG ++ L N + + APA G G + G + Y I
Sbjct: 217 AWIQAGVPTKKLVLGIPFYGYAWRLVNANIHGLRAPAAGKSNVG--AVDDGSMTYNRIRD 274
Query: 167 SLKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ + + N +G Y + G+ W+ YDD + ++K YV + L G W + D
Sbjct: 275 YIVESRATTVY-NATIVGDYCYSGSNWISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQ 333
Score = 42.6 bits (101), Expect = 4e-05
Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 3 VKKKNTYLDFMNILSYDYH--SAFEPAVNHHSPLFP 36
V+ LD++N+++YD++ + N H+ LF
Sbjct: 169 VESLARNLDWINLMAYDFYGPNWSPSQTNSHAQLFD 204
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 212 bits (541), Expect = 5e-68
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 17/179 (9%)
Query: 52 VSYD---IHRYLDFMNILSYDYH-SAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKH 107
V Y + LD++N+++YD++ + + LF G S D +
Sbjct: 166 VLYPVSAVASSLDWVNLMAYDFYGPGWSRVTGPPAALFDPSNAG-------PSGDAGTRS 218
Query: 108 YLKSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSS 167
++++G K VLG P YG ++ L N S+ AP G G + Y +I
Sbjct: 219 WIQAGLPAKKAVLGFPYYGYAWRLTNANSHSYYAPTTGAA-----ISPDGSIGYGQIRKF 273
Query: 168 LKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ + + + N +G Y + G W+GYDD + K +Y + L G W + DD
Sbjct: 274 IVDNGATTVY-NSTVVGDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADD 331
Score = 45.7 bits (109), Expect = 4e-06
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 3 VKKKNTYLDFMNILSYDYH-SAFEPAVNHHSPLFP 36
V + LD++N+++YD++ + + LF
Sbjct: 170 VSAVASSLDWVNLMAYDFYGPGWSRVTGPPAALFD 204
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 203 bits (517), Expect = 7e-64
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLF--PLEEDGEYNFEAQLSIDHTIKHYLKSG 112
I +D++NI++YD++ A++ H++PL P ++ + +L +G
Sbjct: 234 KIAAIVDWINIMTYDFNGAWQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAG 293
Query: 113 ADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDD 172
KLVLG+P YGR + N G G T E G +Y++ ++ + +
Sbjct: 294 VPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVG--TWEAGSFDFYDLEANYINKN 351
Query: 173 WSVEHPNPRAMGPYAFKGN--QWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ N A PY + + +++ YDD E K Y+ + LGG MFW + D
Sbjct: 352 GYTRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGDR 407
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 196 bits (500), Expect = 3e-61
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 27/202 (13%)
Query: 50 SIVSYDI---HRYLDFMNILSYDYHSAFE--PAVNHHSPLFPLEEDGEYNFEAQLSIDHT 104
S +DI + +DF+N+ ++D+ + ++ +P++ DG + A L+ D
Sbjct: 201 STWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPIYHP--DGSKDRLAHLNADFQ 258
Query: 105 IKHYLKSGADPDKLVLGIPTYGRSYTLFNPESNQ---IGAPADGPGEQGDATREKGYLAY 161
++++L G +K+ LG+ TYG ++ L + + GP +G +++ G L+Y
Sbjct: 259 VEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPETSGPAPEGFQSQKPGLLSY 318
Query: 162 YEICSSLKSDDWSVEHPN----------PRAMGPYAFK-------GNQWVGYDDQEIAKD 204
EIC L + N + G A++ WV YDD + A +
Sbjct: 319 AEICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDGQITEGIWVSYDDPDSASN 378
Query: 205 KAKYVNDQKLGGIMFWSIDNDD 226
KA Y + LGG+ + + DD
Sbjct: 379 KAAYARVKNLGGVALFDLSYDD 400
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 192 bits (490), Expect = 5e-60
Identities = 47/174 (27%), Positives = 83/174 (47%), Gaps = 17/174 (9%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
++ +YLDF N+++YD+ +++ H S +FP E S D +K Y+K+G
Sbjct: 191 EMDKYLDFWNLMAYDFSGSWDKVSGHMSNVFPSTTKPE---STPFSSDKAVKDYIKAGVP 247
Query: 115 PDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWS 174
+K+VLG+P YGR++ ++ IG +G G + E G Y ++ +
Sbjct: 248 ANKIVLGMPLYGRAFAS----TDGIGTSFNGVGG---GSWENGVWDYKDMP-----QQGA 295
Query: 175 VEHPNPRAMGPYAFKGNQ--WVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
Y++ N+ + YD +IA KA+Y+ +GG M+W +D
Sbjct: 296 QVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSDK 349
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 192 bits (490), Expect = 9e-60
Identities = 44/196 (22%), Positives = 78/196 (39%), Gaps = 27/196 (13%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
+ L+++N+++YD + +S L+ + S D + +YL +G
Sbjct: 212 AVAPVLNYINLMTYDMAYGTQ---YFNSNLYDSSHWPTVAAADKYSADFVVNNYLAAGLK 268
Query: 115 PDKLVLGIPTYGR----------SYTLFNPESNQIGAPADGPGEQ------GDATREKGY 158
P ++ LGI YGR +T + ++N + P GP + G + Y
Sbjct: 269 PSQMNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTY 328
Query: 159 LAYYEICSSLKSDDWS--VEHPNPRAMGPYAFKGNQ------WVGYDDQEIAKDKAKYVN 210
+ Y +I L +D EH + A P+ + + Y++ KA Y+
Sbjct: 329 VKYNDIVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYIK 388
Query: 211 DQKLGGIMFWSIDNDD 226
+ L G MFW DD
Sbjct: 389 AKGLAGAMFWEYGADD 404
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 192 bits (489), Expect = 2e-59
Identities = 44/174 (25%), Positives = 78/174 (44%), Gaps = 17/174 (9%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
D+ + LDF N+++YDY +F H + ++ + + + Y G
Sbjct: 232 DMDQQLDFWNLMAYDYAGSFSSLSGHQANVYNDTSN---PLSTPFNTQTALDLYRAGGVP 288
Query: 115 PDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWS 174
+K+VLG+P YGRS+ ++ G P +G G+ + E G Y + + +
Sbjct: 289 ANKIVLGMPLYGRSFAN----TDGPGKPYNGVGQ---GSWENGVWDYKALPQA-----GA 336
Query: 175 VEHPNPRAMGPYAFKGN--QWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
EH P M Y++ + YD+ ++A K+ Y+ LGG M+W +D
Sbjct: 337 TEHVLPDIMASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSDK 390
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 193 bits (492), Expect = 4e-59
Identities = 48/175 (27%), Positives = 77/175 (44%), Gaps = 9/175 (5%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAV-NHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGA 113
+D + ++SYD++ AF+ H + L + + + + + L G
Sbjct: 354 VAQNSMDHIFLMSYDFYGAFDLKNLGHQTALNAPAWKPDTAY----TTVNGVNALLAQGV 409
Query: 114 DPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDW 173
P K+V+G YGR +T N N I G T E G + Y +I S +W
Sbjct: 410 KPGKIVVGTAMYGRGWTGVNGYQNNIPFTGTATG-PVKGTWENGIVDYRQIAGQFMSGEW 468
Query: 174 SVEHPNPRAMGPYAFKGN--QWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ + A PY FK + + +DD + K KYV D++LGG+ W ID D+
Sbjct: 469 QYTY-DATAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 189 bits (481), Expect = 2e-58
Identities = 47/182 (25%), Positives = 76/182 (41%), Gaps = 16/182 (8%)
Query: 49 LSIVSYD---IHRYLDFMNILSYDYHSAFEPAV-NHHSPLFPLEEDGEYNFEAQLSIDHT 104
+ +D + LDF +I YD H A+ P + H + L+ D + S D
Sbjct: 240 IDAGGWDDPANFKSLDFGSIQGYDLHGAWNPTLTGHQANLYDDPAD-PRAPSKKFSADKA 298
Query: 105 IKHYLKSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEI 164
+K YL +G DP +L LG+ YGR +T ++ PA T E Y ++
Sbjct: 299 VKKYLAAGIDPKQLGLGLAAYGRGWT--GAKNVSPWGPATDGAP---GTYETANEDYDKL 353
Query: 165 CSSLKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDN 224
+ + + + + + G QW YD+ K K Y+ + LGG M+W +
Sbjct: 354 KTL-----GTDHY-DAATGSAWRYDGTQWWSYDNIATTKQKTDYIVSKGLGGGMWWELSG 407
Query: 225 DD 226
D
Sbjct: 408 DR 409
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 190 bits (485), Expect = 2e-58
Identities = 48/209 (22%), Positives = 85/209 (40%), Gaps = 37/209 (17%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEED--------------------GEYN 94
I LD++N+++YD +E NH + LF +
Sbjct: 201 QIVAPLDYINLMTYDLAGPWEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFP 260
Query: 95 FEAQLSIDHTIKHYLKS-GADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPG------ 147
L++D ++ +L G K+V+G+P YGR++ + + + PG
Sbjct: 261 SPFSLTVDAAVQQHLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPS 320
Query: 148 --------EQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFKG--NQWVGYD 197
E+ ++ +Y ++ L+ + N + PY + +V YD
Sbjct: 321 TDYWLVGCEECVRDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYD 380
Query: 198 DQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
D E K KAKY+ Q+LGG+MFW + D+
Sbjct: 381 DAESFKYKAKYIKQQQLGGVMFWHLGQDN 409
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 187 bits (476), Expect = 8e-58
Identities = 39/181 (21%), Positives = 71/181 (39%), Gaps = 20/181 (11%)
Query: 51 IVSYDI---HRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKH 107
+ LD +N+++YDY +++ H + L+P + S +
Sbjct: 202 YNVLKLAQLGSVLDNINLMAYDYAGSWDSVSGHQTNLYPSTSN---PSSTPFSTKAAVDA 258
Query: 108 YLKSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSS 167
Y+ +G K++LG+P YGR++ ++ G P GE + E G Y + +
Sbjct: 259 YIAAGVPASKIILGMPIYGRAFVG----TDGPGKPYSTIGE---GSWESGIWDYKVLPKA 311
Query: 168 LKSDDWSVEHPNPRAMGPYAF--KGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
+ + A Y++ + YD ++ + K Y LGG MFW D
Sbjct: 312 -----GATVITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
Query: 226 D 226
Sbjct: 367 K 367
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 179 bits (456), Expect = 2e-53
Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 27/199 (13%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFP-------------LEEDGEYNFEAQLSI 101
D +Y+D++ ++YD++ + H + L+ ++E+GE +
Sbjct: 357 DAVQYMDYIFAMTYDFYGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTA 416
Query: 102 DHTIKHYLKSGADPDKLVLGIPTYGRSYTLFNPESNQIG-------APADGPGEQGDATR 154
D+ I+ L G +KLVLG YGR + P++ A G
Sbjct: 417 DNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVW 476
Query: 155 EKGYLAYYEICSSLKSDDWS-----VEHPNPRAMGPYAFKGN--QWVGYDDQEIAKDKAK 207
E G + Y I S + + + + +A P+ + + + + +DD K
Sbjct: 477 EDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGN 536
Query: 208 YVNDQKLGGIMFWSIDNDD 226
Y L G+ W ID D+
Sbjct: 537 YAKSLGLAGLFSWEIDADN 555
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 175 bits (444), Expect = 8e-52
Identities = 35/188 (18%), Positives = 72/188 (38%), Gaps = 25/188 (13%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKS-GAD 114
+ + +N+++YD+ + + ++HH+ ++ + ++ SID + H + D
Sbjct: 345 MDAGVTGINLMTYDFFTLGDGKLSHHTNIYR----DPSDVYSKYSIDDAVTHLIDEKKVD 400
Query: 115 PDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYE---------IC 165
P + +G Y R+ ++ +G T L +E IC
Sbjct: 401 PKAIFIGYAGYTRNAKNATITTS----IPSEEALKGTYTDANQTLGSFEYSVLEWTDIIC 456
Query: 166 SSLKSDDWS-----VEHPNPRAMGPYAF--KGNQWVGYDDQEIAKDKAKYVNDQKLGGIM 218
+ + + A Y + ++ D +DK +YV D+ LGG+
Sbjct: 457 HYMDFEKGEGRNGYKLVHDKVAKADYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLF 516
Query: 219 FWSIDNDD 226
WS D D+
Sbjct: 517 IWSGDQDN 524
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 135 bits (341), Expect = 1e-38
Identities = 30/181 (16%), Positives = 59/181 (32%), Gaps = 45/181 (24%)
Query: 47 AQLSIVSYDIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIK 106
++ + +Y D++N++SYD + + H+ +K
Sbjct: 149 SRWLNYGTEWEQYFDYINLMSYDRGAFTD-KPVQHASYD--------------DFVKDLK 193
Query: 107 HYL-KSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEIC 165
++ + A K+V G+P YG S+ GA D G + Y I
Sbjct: 194 YWNEQCRASKSKIVGGLPFYGYSWEESLQ-----GAVDDVRG-----------IRYSGIL 237
Query: 166 SSLKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDND 225
L ++ Y+ + +K K++ + G+M W + D
Sbjct: 238 KHLGNEAA-------------DKDNIGKTYYNGRPTIANKCKFIKENDYAGVMIWQLFQD 284
Query: 226 D 226
Sbjct: 285 A 285
Score = 43.1 bits (102), Expect = 2e-05
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 9 YLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEY 43
Y D++N++SYD + + H+ +D +Y
Sbjct: 161 YFDYINLMSYDRGAFTD-KPVQHASYDDFVKDLKY 194
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 120 bits (302), Expect = 5e-33
Identities = 27/182 (14%), Positives = 59/182 (32%), Gaps = 42/182 (23%)
Query: 53 SYD---IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
YD I +++M I++YD+H A +P+ + +I+ +
Sbjct: 165 GYDYGGIGAVVNYMFIMAYDWHHAGSEP-GPVAPITEIRR----------TIE-----FT 208
Query: 110 KSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLK 169
+ K+++G+P YG + + Q G A
Sbjct: 209 IAQVPSRKIIIGVPLYGYDWII----PYQPGTVASAIS-------------NQNAIERAM 251
Query: 170 SDDWSVEHPNPRAMGPYAFKGNQ-----WVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDN 224
+++ + P+ +Q V ++ K + V + +L I W +
Sbjct: 252 RYQAPIQY-SAEYQSPFFRYSDQQGRTHEVWFEGVRSMSRKMQIVREYRLQAIGAWQLTL 310
Query: 225 DD 226
+
Sbjct: 311 AE 312
Score = 35.8 bits (83), Expect = 0.007
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 9 YLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEY 43
+++M I++YD+H A +P+ + E+
Sbjct: 174 VVNYMFIMAYDWHHAGSEP-GPVAPITEIRRTIEF 207
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome,
secreted, hydrolase; 2.70A {Homo sapiens}
Length = 393
Score = 85.5 bits (211), Expect = 9e-20
Identities = 23/176 (13%), Positives = 55/176 (31%), Gaps = 43/176 (24%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
+ LD ++++YDY +A +P ++PL + ++
Sbjct: 249 LAPVLDGFSLMTYDYSTAHQP--GPNAPLSW--------------VRACVQVLDPKSKWR 292
Query: 116 DKLVLGIPTYGRSYTLFNPESNQIGAPADGPGEQGDATREKGYLAYYEICSSLKSDDWSV 175
K++LG+ YG Y + + + +LK +
Sbjct: 293 SKILLGLNFYGMDYAT--------------------SKDAREPVVGARYIQTLKDHRPRM 332
Query: 176 EHPNPRAMGPY-----AFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
+ +A + + G V Y + + + + + + G+ W +
Sbjct: 333 VW-DSQASEHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGV-GVSIWELGQGL 386
Score = 30.8 bits (69), Expect = 0.37
Identities = 9/35 (25%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 9 YLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEY 43
LD ++++YDY +A +P ++PL + +
Sbjct: 252 VLDGFSLMTYDYSTAHQP--GPNAPLSWVRACVQV 284
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 67.5 bits (165), Expect = 1e-13
Identities = 9/81 (11%), Positives = 24/81 (29%), Gaps = 7/81 (8%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
+ Y + +N ++Y + + + +Y + +G P
Sbjct: 173 FNEYKNAINHINYQFKAYDSSTSVDKFLGYYNNAASKYK-------GGNVLISFSTGPHP 225
Query: 116 DKLVLGIPTYGRSYTLFNPES 136
L + + + +L N
Sbjct: 226 GGLPVDKGFFDAATSLKNKGK 246
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 63.4 bits (154), Expect = 4e-12
Identities = 24/199 (12%), Positives = 57/199 (28%), Gaps = 49/199 (24%)
Query: 31 HSPLFPLEEDGEYNFEAQLSIVSYDIH---RYLDFMNILSYDYHSAFEPAVNHHSPLFPL 87
+P + G + + I+ L ++++ Y+ S N+++
Sbjct: 160 MAPETAYVQGGYSAYGSIWGAYLPIIYGVKDKLTYIHVQHYNAGSGIGMDGNNYNQGTAD 219
Query: 88 EEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPADGPG 147
E + + + D++++G+P
Sbjct: 220 YEVAMADMLLHGFPVGGNANNIFPALRSDQVMIGLPA----------------------- 256
Query: 148 EQGDATREKGYLAYYEICSSLKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAK 207
A GY++ E+ +L + V + + +++
Sbjct: 257 -APAAAPSGGYISPTEMKKALNYI-------------------IKGVPFGGKYKLSNQSG 296
Query: 208 YVNDQKLGGIMFWSIDNDD 226
Y G+M WSI+ D
Sbjct: 297 YPA---FRGLMSWSINWDA 312
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.7 bits (100), Expect = 5e-05
Identities = 43/223 (19%), Positives = 68/223 (30%), Gaps = 70/223 (31%)
Query: 15 ILSYDYHSAF---EPAVNHH-SPLFPLEEDGEYNFEAQLSIVSY-------DIHRYLDFM 63
I +Y + P S LF +G AQL + Y + +
Sbjct: 123 IKNY-ITARIMAKRPFDKKSNSALFRAVGEG----NAQL----VAIFGGQGNTDDYFEEL 173
Query: 64 NILSYD-YHSAFEPAVNHHSP-LFPL---EEDGEYNFEAQLSIDHTIKHYLKSGADPDKL 118
L Y YH + + L L D E F ++ I +L+ +P
Sbjct: 174 RDL-YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ--GLN--ILEWLE---NPSN- 224
Query: 119 VLGIPTYGRSYTLFNPES-NQIG----------APADG--PGE-----QGDATREKGYLA 160
P + Y L P S IG A G PGE +G +G
Sbjct: 225 ---TP--DKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG--- 276
Query: 161 YYEICSSL---KSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQE 200
+ +++ ++D W + R F ++G E
Sbjct: 277 ---LVTAVAIAETDSWESFFVSVRKAITVLF----FIGVRCYE 312
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP:
c.1.8.5
Length = 290
Score = 34.7 bits (79), Expect = 0.018
Identities = 10/72 (13%), Positives = 21/72 (29%), Gaps = 19/72 (26%)
Query: 56 IHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGADP 115
+ D++N + Y + + +P + I L+ P
Sbjct: 178 YNAKKDYINWVDYQFSNQQKPVSTDDAF-------------------VEIFKSLEKDYHP 218
Query: 116 DKLVLGIPTYGR 127
K++ G T
Sbjct: 219 HKVLPGFSTDPL 230
Score = 27.4 bits (60), Expect = 3.7
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 9 YLDFMNILSYDYHSAFEPAVNHHS 32
D++N + Y + + +P +
Sbjct: 181 KKDYINWVDYQFSNQQKPVSTDDA 204
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 1.75A {Lactococcus lactis
subsp}
Length = 321
Score = 33.4 bits (76), Expect = 0.050
Identities = 11/74 (14%), Positives = 27/74 (36%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
++ Y DF+N Y+ + + + ++ + +F L+
Sbjct: 178 NLDSYYDFINPQYYNQGGDGFWDSDLNMWISQSNDEKKEDFLYGLTQRLVTGTDGFIKIP 237
Query: 115 PDKLVLGIPTYGRS 128
K V+G+P+ +
Sbjct: 238 ASKFVIGLPSNNDA 251
Score = 27.7 bits (61), Expect = 3.3
Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 3/53 (5%)
Query: 177 HPNPRAMGPYAFKGNQWVGY--DDQEIAKDKAKYVND-QKLGGIMFWSIDNDD 226
+ +G + GY D + + ++ G+M WS++ D
Sbjct: 237 PASKFVIGLPSNNDAAATGYVKDPNAVKNALNRLKASGNEIKGLMTWSVNWDA 289
>3uhf_A Glutamate racemase; structural genomics, center for structural
genomics of infec diseases, csgid, alpha-beta sandwich
fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni}
PDB: 3uho_A* 3uhp_A
Length = 274
Score = 31.8 bits (73), Expect = 0.13
Identities = 11/40 (27%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Query: 83 PLF-PLEEDGEYNFEAQLSIDHTIKHYLKSGADPDKLVLG 121
LF P+ E+G + + + +++Y K+ PD L+L
Sbjct: 167 GLFVPMVEEGIFEGDF---LQSAMEYYFKNITTPDALILA 203
>2gsj_A Protein PPL-2; mimosoideae, chimerolectin, endochitinase, glycosyl
hydrolase family 18, equilibrium sedimentation, X-RAY;
1.73A {Parkia platycephala}
Length = 271
Score = 30.4 bits (68), Expect = 0.36
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 171 DDWSVEHPNPRAMGPYAFKGNQWVGY-DDQEIAKDKAKYVNDQ-KLGGIMFWSIDNDD 226
+ W+ +G A GY Q++ +V K GG+M W ND
Sbjct: 202 NKWTSSFNAKFYVGLPASPEAAGSGYVPPQQLINQVLPFVKRSPKYGGVMLWDRFNDL 259
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase
(glucosidase); 1.90A {Streptomyces plicatus} SCOP:
c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A
1c93_A
Length = 271
Score = 30.3 bits (68), Expect = 0.44
Identities = 8/82 (9%), Positives = 21/82 (25%), Gaps = 1/82 (1%)
Query: 50 SIVSYDIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYL 109
S +SY D + Y+ ++ E ++ ++ +
Sbjct: 175 SRLSYGGVDVSDKFDYAWNPYYGTWQVPGIALPKAQLSPAAVEIGRTSRSTVA-DLARRT 233
Query: 110 KSGADPDKLVLGIPTYGRSYTL 131
L + R+ +
Sbjct: 234 VDEGYGVYLTYNLDGGDRTADV 255
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 29.5 bits (66), Expect = 0.94
Identities = 13/74 (17%), Positives = 28/74 (37%), Gaps = 12/74 (16%)
Query: 55 DIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEEDGEYNFEAQLSIDHTIKHYLKSGAD 114
++ L +N+ Y+ + ++ G +F L+ L+ G
Sbjct: 168 NVKDILTVVNMQYYNSGTMLGCDGKVYA-------QGTVDFLTALACI-----QLEGGLA 215
Query: 115 PDKLVLGIPTYGRS 128
P ++ LG+P R+
Sbjct: 216 PSQVGLGLPASTRA 229
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A
{Aspergillus fumigatus}
Length = 290
Score = 28.7 bits (64), Expect = 1.3
Identities = 9/94 (9%), Positives = 21/94 (22%), Gaps = 25/94 (26%)
Query: 31 HSPLFPLEEDGEYNFEAQLSIVSYDIHRYLDFMNILSYDYHSAFEPAVNHHSPLFPLEED 90
+P+ + + + N Y+ E + +
Sbjct: 161 LAPVAAALLGIGNLSGFDYRQLEQQRGSKISWYNAQFYNGWGLAEDPRMYAA-------- 212
Query: 91 GEYNFEAQLSIDHTIKHYLKSGADPDKLVLGIPT 124
+ G P ++V G+ T
Sbjct: 213 -----------------IVAQGWSPQRVVYGLLT 229
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.5
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 17/38 (44%)
Query: 106 KHYLKSGADPDKLVLGIPTYGRSYTLFNPESNQIGAPA 143
K LK KL S L+ +S APA
Sbjct: 19 KQALK------KL-------QASLKLYADDS----APA 39
>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT
barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB:
3a4w_A* 3a4x_A* 3afb_A
Length = 311
Score = 28.5 bits (63), Expect = 1.9
Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 197 DDQEI-----AKDKAKYVNDQKLGGIMFWSIDND 225
DD+ + A+ + K+G + FWS+D D
Sbjct: 230 DDKSVFTLEDAQQLVDWAIQHKIGSLAFWSVDRD 263
>3mu7_A XAIP-II, xylanase and alpha-amylase inhibitor protein; TIM barell,
amylase/xylanase inhibitory protein, hydrolase I; 1.29A
{Scadoxus multiflorus} PDB: 3o9n_A 3oih_A* 3hu7_A
3m7s_A* 3d5h_A*
Length = 273
Score = 28.5 bits (63), Expect = 1.9
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 171 DDWSVEHPNPR-AMGPYAFKGNQWVGY-DDQEIAKDKAKYVNDQ-KLGGIMFWSIDNDD 226
+WS++ + +G A GY ++ D K GGIM W D
Sbjct: 202 KEWSMKARTDKVFLGFPAHPDAAGSGYMPPTKVKFSVFPNAQDSTKFGGIMLWDSYWDT 260
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP-
murnac-Ala, peptidoglycan biosynthesis, peptidoglycan
synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Length = 285
Score = 27.6 bits (62), Expect = 3.0
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 82 SPLF-PLEEDGEYN-FEAQLSIDHTIKHYLKSGADPDKLVLG 121
S L E + + ++ ++ +L+ PD +VLG
Sbjct: 162 SAEMVELAEAKLHGEDVSLDALKRILRPWLRMKEPPDTVVLG 203
>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis}
SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A*
1kqy_A* 1kqz_A*
Length = 273
Score = 27.8 bits (61), Expect = 3.0
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 210 NDQKLGGIMFWSIDNDD 226
K GG+M WS DD
Sbjct: 245 KSPKYGGVMLWSKFYDD 261
>1cnv_A Concanavalin B; plant chitinase, chitin binding protein, SEED
protein; 1.65A {Canavalia ensiformis} SCOP: c.1.8.5
Length = 299
Score = 27.4 bits (60), Expect = 3.7
Identities = 5/43 (11%), Positives = 9/43 (20%)
Query: 184 GPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDNDD 226
G ++ + GI W+ D
Sbjct: 229 SQATAPGGGYIPPSALIGQVLPYLPDLQTRYAGIALWNRQADK 271
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis,
pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A
{Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A*
1i43_A*
Length = 445
Score = 27.2 bits (61), Expect = 4.3
Identities = 3/33 (9%), Positives = 9/33 (27%), Gaps = 3/33 (9%)
Query: 101 IDHTIKHYLKSGADPDKLVLGIPTYGRSYTLFN 133
+ + +G +V Y ++
Sbjct: 142 STVMLLALVPAG---GHIVTTTDCYRKTRIFIE 171
>2yih_A CEL44C, xyloglucanase; hydrolase, GH44, endo-glucanase,
carbohydrate-binding protei; HET: BGC; 1.70A
{Paenibacillus polymyxa} PDB: 2yjq_A* 2ykk_A* 3zq9_A*
Length = 524
Score = 26.9 bits (58), Expect = 6.5
Identities = 11/65 (16%), Positives = 20/65 (30%)
Query: 160 AYYEICSSLKSDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMF 219
+ + S W+ A N Y D+ + KY G+
Sbjct: 122 GSVQESEAAPSARWNQVVNAKNAPFQLQPDLNDNYVYVDEFVHFLVNKYGTASTKAGVKG 181
Query: 220 WSIDN 224
+++DN
Sbjct: 182 YALDN 186
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide
acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1
Length = 150
Score = 26.1 bits (58), Expect = 7.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Query: 132 FNPESNQIGAPADGPGEQGD 151
FNPE+ GAP D GD
Sbjct: 62 FNPENKNHGAPGDTDRHVGD 81
>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel,
composite domain of glycosyl HY families 5, 30, 39 and
51, hydrolase; 0.96A {Clostridium thermocellum} PDB:
2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A*
Length = 519
Score = 26.4 bits (57), Expect = 9.7
Identities = 14/55 (25%), Positives = 17/55 (30%)
Query: 170 SDDWSVEHPNPRAMGPYAFKGNQWVGYDDQEIAKDKAKYVNDQKLGGIMFWSIDN 224
S W A Y D+ + KY N GI +SIDN
Sbjct: 131 SSRWKEVKFEKGAPFSLTPDTEDDYVYMDEFVNYLVNKYGNASTPTGIKGYSIDN 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.136 0.421
Gapped
Lambda K H
0.267 0.0468 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,734,134
Number of extensions: 221531
Number of successful extensions: 585
Number of sequences better than 10.0: 1
Number of HSP's gapped: 495
Number of HSP's successfully gapped: 83
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 55 (25.6 bits)