BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5819
(296 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain
Length = 114
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 45/81 (55%), Gaps = 5/81 (6%)
Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSE----SYIKLHYG-NYIFEKLLLRPIVEEASRI 64
W QT S+V IT+ + NV + V+V SE + +KL G +Y + LL PI+ E S
Sbjct: 14 WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTF 73
Query: 65 RLENNEAEFELIKSEQAMWDE 85
++ + + E +L K E W++
Sbjct: 74 KVLSTKIEIKLKKPEAVRWEK 94
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 222 GFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXX 281
+I +L EE N KG++ F+ G+Y A+ Y+ ++ P A LYSNR
Sbjct: 6 AYINPELAQEEKN------KGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK 59
Query: 282 XXXXXKAVDD 291
+A+DD
Sbjct: 60 LMEFQRALDD 69
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 234 NPD---WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXXKAVD 290
NPD VK KG++ F+ G+Y A+ Y+ ++ P A LYSNR A+
Sbjct: 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71
Query: 291 DASEV 295
D E
Sbjct: 72 DCEEC 76
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXXKAVDDA 292
+K KG++ GN A+ YS ++L P+ LYSNR KA +D
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 61
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 31.2 bits (69), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSH--GLQLCP-NLACLYSNR 275
P ++ + ++ +G+++F+ G+Y GA++AY+ GL P + A L+ NR
Sbjct: 23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNR 71
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXXKAVDDAS 293
+K + + F+ +Y A+ YS ++L P+ A Y NR A++DA+
Sbjct: 24 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDAT 79
>pdb|4FGV|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 1)
pdb|4HZK|A Chain A, Crystal Structure Of Free Crm1 (crystal Form 2)
pdb|4HZK|B Chain B, Crystal Structure Of Free Crm1 (crystal Form 2)
Length = 1086
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 22/87 (25%)
Query: 27 PTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMWDEK 86
P H+V+ F I L Y F LL +L+N + +F + + MW K
Sbjct: 848 PEHRVEFFNLLRAINL----YCFPALL-----------KLDNRQFKFVI---DSCMWASK 889
Query: 87 KDKRSKEAVSVQMKLE----TQEQTDV 109
D R E + M LE E+TDV
Sbjct: 890 HDNRDVETAGLNMCLELINNIAEKTDV 916
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXXKAVDDAS 293
+K + + F+ +Y A+ YS ++L P+ A Y NR A+ DA+
Sbjct: 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 64
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRXXXXXXXXXXXKAVDDAS 293
+K + + F+ +Y A+ YS ++L P+ A Y NR A+ DA+
Sbjct: 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDAT 71
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 34/79 (43%)
Query: 213 KQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLY 272
KQ + ++A + L + NN G+ ++ G+Y A+ Y L+L PN A +
Sbjct: 21 KQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAW 80
Query: 273 SNRXXXXXXXXXXXKAVDD 291
R KA++D
Sbjct: 81 YRRGNAYYKQGDYQKAIED 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,369,981
Number of Sequences: 62578
Number of extensions: 334620
Number of successful extensions: 629
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 26
length of query: 296
length of database: 14,973,337
effective HSP length: 98
effective length of query: 198
effective length of database: 8,840,693
effective search space: 1750457214
effective search space used: 1750457214
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)