Query psy5819
Match_columns 296
No_of_seqs 394 out of 1839
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 18:45:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5819.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5819hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2265|consensus 99.8 3.5E-19 7.6E-24 150.0 8.7 111 5-115 18-141 (179)
2 cd06493 p23_NUDCD1_like p23_NU 99.8 2.6E-18 5.7E-23 131.2 9.8 79 8-86 1-84 (85)
3 cd06494 p23_NUDCD2_like p23-li 99.8 4.4E-18 9.5E-23 132.1 10.5 85 2-86 2-92 (93)
4 cd06495 p23_NUDCD3_like p23-li 99.8 4.4E-18 9.6E-23 134.1 10.0 82 5-86 4-93 (102)
5 cd06492 p23_mNUDC_like p23-lik 99.7 1.3E-17 2.7E-22 128.1 9.6 79 8-86 1-86 (87)
6 cd06469 p23_DYX1C1_like p23_li 99.7 1.7E-17 3.7E-22 124.1 9.4 77 10-86 1-77 (78)
7 cd06465 p23_hB-ind1_like p23_l 99.7 1.8E-17 4E-22 132.0 9.5 79 6-86 1-86 (108)
8 cd06468 p23_CacyBP p23_like do 99.7 6.7E-17 1.5E-21 124.8 10.2 82 5-86 1-91 (92)
9 cd06467 p23_NUDC_like p23_like 99.7 7.1E-17 1.5E-21 122.7 10.0 79 8-86 1-84 (85)
10 cd06488 p23_melusin_like p23_l 99.7 1.4E-16 3.1E-21 122.2 9.5 80 7-86 2-86 (87)
11 cd06466 p23_CS_SGT1_like p23_l 99.7 1.5E-16 3.3E-21 120.4 8.3 78 9-86 1-83 (84)
12 cd06489 p23_CS_hSgt1_like p23_ 99.7 2.6E-16 5.7E-21 119.7 8.6 78 9-86 1-83 (84)
13 PF04969 CS: CS domain; Inter 99.6 2.8E-15 6.2E-20 111.3 10.3 72 6-77 1-79 (79)
14 cd06463 p23_like Proteins cont 99.6 2.9E-15 6.3E-20 112.2 9.2 77 10-86 1-83 (84)
15 cd00237 p23 p23 binds heat sho 99.6 4E-15 8.6E-20 118.3 10.3 79 6-86 2-86 (106)
16 cd06490 p23_NCB5OR p23_like do 99.5 4.7E-13 1E-17 102.7 9.5 78 8-86 1-86 (87)
17 KOG0553|consensus 99.4 2.1E-13 4.6E-18 124.6 7.3 64 233-296 79-142 (304)
18 PLN03088 SGT1, suppressor of 99.4 4.5E-13 9.8E-18 127.8 9.0 81 6-86 157-242 (356)
19 KOG1309|consensus 99.4 5.4E-13 1.2E-17 113.1 6.8 81 6-86 4-89 (196)
20 KOG0551|consensus 99.4 5.3E-13 1.2E-17 123.3 5.6 84 212-296 59-146 (390)
21 KOG0547|consensus 99.3 4.4E-12 9.5E-17 122.2 6.4 63 234-296 114-176 (606)
22 KOG0548|consensus 99.3 1E-11 2.2E-16 120.7 7.5 62 235-296 358-419 (539)
23 KOG4234|consensus 99.2 2.8E-11 6E-16 105.5 6.5 64 233-296 93-161 (271)
24 PF13414 TPR_11: TPR repeat; P 99.2 7.8E-11 1.7E-15 85.2 7.4 63 234-296 2-65 (69)
25 KOG4648|consensus 99.1 4.4E-11 9.6E-16 111.4 4.7 62 234-295 96-157 (536)
26 KOG3158|consensus 99.1 1.7E-10 3.7E-15 97.4 5.8 91 3-95 5-112 (180)
27 KOG1667|consensus 99.0 9.7E-10 2.1E-14 97.9 7.6 83 4-86 213-301 (320)
28 cd00298 ACD_sHsps_p23-like Thi 99.0 2E-09 4.3E-14 78.5 7.3 68 10-77 1-80 (80)
29 KOG4642|consensus 98.9 5.9E-10 1.3E-14 99.3 3.6 63 234-296 9-71 (284)
30 KOG0548|consensus 98.9 1E-09 2.2E-14 106.9 5.4 62 235-296 2-63 (539)
31 KOG3260|consensus 98.8 4.3E-09 9.4E-14 89.4 5.2 82 5-86 74-161 (224)
32 KOG0550|consensus 98.8 8.1E-09 1.7E-13 98.2 5.5 62 235-296 249-314 (486)
33 PLN03088 SGT1, suppressor of 98.6 1.7E-07 3.7E-12 89.6 8.3 58 238-295 5-62 (356)
34 KOG0376|consensus 98.6 3.4E-08 7.3E-13 95.7 3.0 63 234-296 3-65 (476)
35 TIGR00990 3a0801s09 mitochondr 98.5 1.7E-07 3.6E-12 95.4 8.0 62 234-296 126-187 (615)
36 KOG4379|consensus 98.5 1.7E-07 3.7E-12 89.7 7.0 82 5-86 289-374 (596)
37 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 5.2E-07 1.1E-11 87.6 9.7 65 231-295 71-138 (453)
38 PRK15359 type III secretion sy 98.4 7.1E-07 1.5E-11 74.4 8.0 65 231-295 54-118 (144)
39 PF13371 TPR_9: Tetratricopept 98.4 6.4E-07 1.4E-11 65.0 6.8 54 242-295 2-55 (73)
40 PF13432 TPR_16: Tetratricopep 98.4 9.1E-07 2E-11 63.0 6.6 56 240-295 2-57 (65)
41 KOG0543|consensus 98.4 4.8E-07 1.1E-11 86.2 6.5 63 234-296 207-284 (397)
42 KOG0550|consensus 98.3 6.2E-07 1.3E-11 85.6 3.8 62 234-295 48-109 (486)
43 PF14559 TPR_19: Tetratricopep 98.2 4.1E-06 8.9E-11 59.9 6.7 51 245-295 1-51 (68)
44 PRK15363 pathogenicity island 98.2 4.7E-06 1E-10 70.5 7.7 63 233-295 67-129 (157)
45 PRK15359 type III secretion sy 98.2 8.8E-06 1.9E-10 67.8 8.3 61 235-295 24-84 (144)
46 KOG4555|consensus 98.2 6.9E-06 1.5E-10 67.6 7.3 61 235-295 43-103 (175)
47 KOG0545|consensus 98.1 2.8E-06 6.1E-11 76.5 4.9 64 232-295 175-256 (329)
48 PRK11189 lipoprotein NlpI; Pro 98.1 1.3E-05 2.9E-10 74.5 9.4 65 231-295 94-158 (296)
49 cd06472 ACD_ScHsp26_like Alpha 98.0 2.6E-05 5.7E-10 60.0 8.1 70 8-77 2-92 (92)
50 KOG1308|consensus 98.0 1.4E-06 3E-11 81.5 -0.0 63 234-296 113-175 (377)
51 COG0071 IbpA Molecular chapero 98.0 5.1E-05 1.1E-09 63.5 9.3 77 5-81 40-136 (146)
52 TIGR02552 LcrH_SycD type III s 98.0 3.3E-05 7.1E-10 62.4 7.6 64 232-295 48-111 (135)
53 TIGR02552 LcrH_SycD type III s 97.9 4.3E-05 9.4E-10 61.7 8.1 62 234-295 16-77 (135)
54 COG5091 SGT1 Suppressor of G2 97.9 4.1E-06 8.9E-11 76.1 1.9 80 7-86 178-263 (368)
55 PF13431 TPR_17: Tetratricopep 97.9 1E-05 2.3E-10 50.9 3.2 33 257-289 1-33 (34)
56 PF13424 TPR_12: Tetratricopep 97.9 2.5E-05 5.4E-10 57.5 5.6 61 235-295 5-72 (78)
57 PF12895 Apc3: Anaphase-promot 97.9 2.7E-05 5.8E-10 58.4 5.3 61 234-295 24-84 (84)
58 cd06464 ACD_sHsps-like Alpha-c 97.8 7.7E-05 1.7E-09 55.9 7.3 68 10-77 2-88 (88)
59 PRK11189 lipoprotein NlpI; Pro 97.8 8.7E-05 1.9E-09 69.0 8.8 63 233-295 62-124 (296)
60 cd00189 TPR Tetratricopeptide 97.8 9.1E-05 2E-09 53.0 7.1 63 233-295 32-94 (100)
61 PRK15363 pathogenicity island 97.8 0.00012 2.6E-09 62.1 8.0 61 235-295 35-95 (157)
62 PF00011 HSP20: Hsp20/alpha cr 97.8 0.00027 5.8E-09 55.0 9.4 73 9-81 1-91 (102)
63 cd06471 ACD_LpsHSP_like Group 97.7 0.00017 3.8E-09 55.4 7.8 70 7-77 2-93 (93)
64 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.00026 5.6E-09 55.1 8.3 61 235-295 39-102 (119)
65 TIGR00990 3a0801s09 mitochondr 97.7 0.00016 3.4E-09 73.7 8.7 61 235-295 160-220 (615)
66 PRK02603 photosystem I assembl 97.6 0.00029 6.2E-09 60.0 8.1 65 231-295 31-98 (172)
67 KOG0624|consensus 97.6 9.2E-05 2E-09 69.8 5.1 63 233-295 36-98 (504)
68 cd06470 ACD_IbpA-B_like Alpha- 97.5 0.00075 1.6E-08 51.8 8.6 68 8-77 3-90 (90)
69 PF07719 TPR_2: Tetratricopept 97.5 0.0003 6.6E-09 43.1 5.0 34 235-268 1-34 (34)
70 PF00515 TPR_1: Tetratricopept 97.5 0.00023 5.1E-09 43.9 4.4 34 235-268 1-34 (34)
71 cd00189 TPR Tetratricopeptide 97.5 0.00056 1.2E-08 48.8 7.1 58 238-295 3-60 (100)
72 PRK12370 invasion protein regu 97.4 0.00052 1.1E-08 69.3 9.0 64 232-295 335-398 (553)
73 CHL00033 ycf3 photosystem I as 97.4 0.00063 1.4E-08 57.5 8.2 64 232-295 32-98 (168)
74 KOG4626|consensus 97.4 0.00026 5.6E-09 71.1 6.0 63 234-296 387-449 (966)
75 TIGR03302 OM_YfiO outer membra 97.4 0.00099 2.2E-08 59.0 9.2 65 231-295 29-96 (235)
76 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.00099 2.2E-08 51.7 8.2 61 235-295 2-65 (119)
77 TIGR02521 type_IV_pilW type IV 97.4 0.00096 2.1E-08 56.9 8.7 64 232-295 62-125 (234)
78 PRK10370 formate-dependent nit 97.4 0.00082 1.8E-08 59.0 8.4 64 232-295 104-170 (198)
79 KOG0553|consensus 97.4 0.0004 8.6E-09 64.3 6.2 70 227-296 107-176 (304)
80 PF12895 Apc3: Anaphase-promot 97.4 0.00035 7.6E-09 52.3 5.0 47 248-294 2-50 (84)
81 cd06497 ACD_alphaA-crystallin_ 97.4 0.00095 2.1E-08 50.9 7.4 67 11-77 6-86 (86)
82 PRK10370 formate-dependent nit 97.4 0.00074 1.6E-08 59.3 7.8 65 231-295 69-136 (198)
83 KOG4234|consensus 97.3 0.00048 1E-08 60.7 6.1 64 232-295 131-194 (271)
84 KOG0624|consensus 97.3 0.00063 1.4E-08 64.3 7.3 59 237-295 157-215 (504)
85 cd06479 ACD_HspB7_like Alpha c 97.3 0.00089 1.9E-08 50.6 6.9 67 11-77 4-81 (81)
86 cd06498 ACD_alphaB-crystallin_ 97.3 0.001 2.2E-08 50.6 7.0 67 12-78 4-84 (84)
87 CHL00033 ycf3 photosystem I as 97.3 0.0013 2.8E-08 55.6 8.5 61 235-295 72-139 (168)
88 TIGR02521 type_IV_pilW type IV 97.3 0.0015 3.3E-08 55.6 9.1 63 233-295 97-161 (234)
89 PRK10743 heat shock protein Ib 97.2 0.0024 5.3E-08 53.0 8.9 72 6-79 35-125 (137)
90 cd06478 ACD_HspB4-5-6 Alpha-cr 97.2 0.0018 3.8E-08 49.0 7.3 67 11-77 3-83 (83)
91 PF13428 TPR_14: Tetratricopep 97.2 0.0012 2.6E-08 43.5 5.5 43 235-277 1-43 (44)
92 cd06475 ACD_HspB1_like Alpha c 97.1 0.0024 5.1E-08 48.7 7.6 67 9-75 4-84 (86)
93 cd06526 metazoan_ACD Alpha-cry 97.1 0.0016 3.5E-08 49.0 6.7 63 15-77 7-83 (83)
94 KOG0543|consensus 97.1 0.0011 2.5E-08 63.5 7.0 59 237-295 259-317 (397)
95 PRK09782 bacteriophage N4 rece 97.1 0.0018 3.9E-08 69.7 9.3 64 232-295 640-703 (987)
96 COG5010 TadD Flp pilus assembl 97.1 0.0016 3.4E-08 59.2 7.5 62 234-295 99-160 (257)
97 PRK02603 photosystem I assembl 97.1 0.0017 3.7E-08 55.2 7.3 51 235-285 72-122 (172)
98 KOG4626|consensus 97.1 0.00065 1.4E-08 68.3 4.9 71 226-296 413-483 (966)
99 KOG1310|consensus 97.1 0.00084 1.8E-08 66.4 5.3 65 232-296 371-438 (758)
100 PRK11597 heat shock chaperone 97.0 0.0053 1.1E-07 51.3 8.9 71 6-78 33-122 (142)
101 cd06476 ACD_HspB2_like Alpha c 97.0 0.004 8.6E-08 47.2 7.2 65 13-77 5-83 (83)
102 TIGR02917 PEP_TPR_lipo putativ 96.9 0.0036 7.7E-08 64.3 8.7 62 234-295 21-82 (899)
103 PF13525 YfiO: Outer membrane 96.9 0.0055 1.2E-07 53.8 8.8 61 234-294 4-67 (203)
104 KOG1125|consensus 96.8 0.0011 2.3E-08 66.0 4.0 63 233-295 462-524 (579)
105 PRK15331 chaperone protein Sic 96.8 0.0026 5.6E-08 54.3 5.7 58 235-292 71-128 (165)
106 PF08190 PIH1: pre-RNA process 96.8 0.0053 1.1E-07 57.6 8.4 64 13-76 259-327 (328)
107 PF13512 TPR_18: Tetratricopep 96.8 0.013 2.9E-07 48.9 9.8 63 232-294 44-124 (142)
108 PRK10866 outer membrane biogen 96.8 0.0073 1.6E-07 54.8 9.0 63 233-295 30-95 (243)
109 KOG1173|consensus 96.8 0.007 1.5E-07 60.3 9.0 60 237-296 457-516 (611)
110 PRK15331 chaperone protein Sic 96.7 0.0071 1.5E-07 51.7 7.8 61 235-295 37-97 (165)
111 PRK15174 Vi polysaccharide exp 96.7 0.0062 1.4E-07 62.9 8.9 63 233-295 282-344 (656)
112 PF00515 TPR_1: Tetratricopept 96.7 0.003 6.5E-08 38.8 3.8 27 269-295 1-27 (34)
113 TIGR03302 OM_YfiO outer membra 96.6 0.0062 1.4E-07 53.8 7.0 60 236-295 71-141 (235)
114 PF09295 ChAPs: ChAPs (Chs5p-A 96.6 0.0098 2.1E-07 57.8 8.7 65 230-294 229-293 (395)
115 KOG4648|consensus 96.6 0.0018 3.8E-08 61.3 3.4 69 228-296 124-192 (536)
116 PRK15179 Vi polysaccharide bio 96.6 0.0087 1.9E-07 62.2 8.8 65 231-295 150-214 (694)
117 PRK15174 Vi polysaccharide exp 96.5 0.011 2.3E-07 61.2 9.1 62 233-294 108-169 (656)
118 KOG0547|consensus 96.5 0.0033 7.2E-08 61.8 4.8 60 235-294 149-208 (606)
119 PRK12370 invasion protein regu 96.5 0.012 2.6E-07 59.4 8.9 65 231-295 368-432 (553)
120 cd06481 ACD_HspB9_like Alpha c 96.4 0.013 2.8E-07 44.8 6.8 63 14-76 6-86 (87)
121 PRK15179 Vi polysaccharide bio 96.4 0.012 2.7E-07 61.1 8.5 64 232-295 117-180 (694)
122 TIGR02917 PEP_TPR_lipo putativ 96.4 0.015 3.3E-07 59.7 9.0 63 234-296 836-898 (899)
123 PRK10803 tol-pal system protei 96.3 0.019 4.2E-07 52.7 8.7 62 234-295 179-243 (263)
124 PRK11788 tetratricopeptide rep 96.3 0.018 3.8E-07 54.5 8.7 59 237-295 182-240 (389)
125 PRK09782 bacteriophage N4 rece 96.3 0.015 3.2E-07 62.8 8.8 61 235-295 609-669 (987)
126 KOG4340|consensus 96.3 0.0064 1.4E-07 56.7 5.2 64 231-294 140-203 (459)
127 PRK11447 cellulose synthase su 96.3 0.014 3E-07 64.1 8.8 59 237-295 463-521 (1157)
128 PRK10803 tol-pal system protei 96.2 0.025 5.4E-07 52.0 8.8 60 236-295 143-206 (263)
129 PLN02789 farnesyltranstransfer 96.2 0.018 3.9E-07 54.5 7.9 50 233-282 140-189 (320)
130 COG3063 PilF Tfp pilus assembl 96.2 0.026 5.6E-07 50.8 8.3 61 235-295 35-95 (250)
131 cd05804 StaR_like StaR_like; a 96.2 0.03 6.5E-07 52.3 9.2 54 240-293 119-172 (355)
132 PF09976 TPR_21: Tetratricopep 96.1 0.039 8.5E-07 45.5 8.6 60 235-294 48-110 (145)
133 PRK11447 cellulose synthase su 96.1 0.019 4.2E-07 62.9 8.4 57 239-295 355-411 (1157)
134 cd06477 ACD_HspB3_Like Alpha c 96.0 0.038 8.2E-07 41.9 7.2 63 12-74 4-80 (83)
135 cd06482 ACD_HspB10 Alpha cryst 96.0 0.031 6.8E-07 42.7 6.8 62 13-74 6-84 (87)
136 PRK10153 DNA-binding transcrip 96.0 0.037 8E-07 55.7 9.2 62 233-295 418-479 (517)
137 PRK11788 tetratricopeptide rep 96.0 0.026 5.6E-07 53.4 7.8 60 235-294 69-132 (389)
138 PF13181 TPR_8: Tetratricopept 95.9 0.017 3.7E-07 35.2 4.2 32 236-267 2-33 (34)
139 COG5010 TadD Flp pilus assembl 95.8 0.038 8.3E-07 50.3 7.9 68 228-295 127-194 (257)
140 PF13371 TPR_9: Tetratricopept 95.8 0.03 6.5E-07 40.1 5.9 46 232-277 26-71 (73)
141 KOG2003|consensus 95.8 0.0069 1.5E-07 59.2 2.9 62 232-293 487-548 (840)
142 PF13432 TPR_16: Tetratricopep 95.7 0.02 4.4E-07 40.2 4.6 38 232-269 28-65 (65)
143 PF03704 BTAD: Bacterial trans 95.7 0.062 1.3E-06 44.0 8.1 76 208-295 47-122 (146)
144 PLN02789 farnesyltranstransfer 95.7 0.02 4.3E-07 54.2 5.7 66 230-295 66-134 (320)
145 KOG0376|consensus 95.6 0.0047 1E-07 60.4 1.1 63 233-295 36-98 (476)
146 PF13512 TPR_18: Tetratricopep 95.5 0.13 2.9E-06 42.9 9.4 63 232-294 7-72 (142)
147 COG4785 NlpI Lipoprotein NlpI, 95.5 0.018 3.9E-07 51.6 4.4 67 228-294 92-158 (297)
148 KOG0551|consensus 95.5 0.025 5.3E-07 53.4 5.5 61 234-294 118-178 (390)
149 PRK10049 pgaA outer membrane p 95.5 0.051 1.1E-06 57.1 8.5 64 232-295 390-453 (765)
150 PF13429 TPR_15: Tetratricopep 95.5 0.035 7.6E-07 50.6 6.5 56 232-287 143-198 (280)
151 KOG1126|consensus 95.5 0.019 4.1E-07 58.1 5.0 86 209-296 397-516 (638)
152 PF13176 TPR_7: Tetratricopept 95.5 0.033 7.1E-07 35.0 4.3 27 238-264 2-28 (36)
153 PF12688 TPR_5: Tetratrico pep 95.4 0.098 2.1E-06 42.4 8.2 60 235-294 38-100 (120)
154 smart00028 TPR Tetratricopepti 95.4 0.033 7.2E-07 31.6 4.0 31 237-267 3-33 (34)
155 KOG1125|consensus 95.4 0.034 7.3E-07 55.6 6.2 65 232-296 427-491 (579)
156 KOG2076|consensus 95.4 0.067 1.5E-06 56.0 8.5 61 234-294 206-266 (895)
157 KOG1126|consensus 95.3 0.049 1.1E-06 55.2 7.3 67 228-294 516-582 (638)
158 PRK10049 pgaA outer membrane p 95.3 0.084 1.8E-06 55.5 9.3 62 234-295 48-109 (765)
159 PF07719 TPR_2: Tetratricopept 95.3 0.034 7.3E-07 33.7 3.8 27 269-295 1-27 (34)
160 PF12569 NARP1: NMDA receptor- 95.1 0.078 1.7E-06 53.4 8.0 58 239-296 198-255 (517)
161 KOG3785|consensus 95.1 0.046 1E-06 52.2 5.8 64 231-295 54-117 (557)
162 KOG2796|consensus 95.0 0.029 6.2E-07 51.6 4.0 62 234-295 251-312 (366)
163 PRK14574 hmsH outer membrane p 94.9 0.13 2.8E-06 54.6 9.4 65 231-295 98-162 (822)
164 PF13429 TPR_15: Tetratricopep 94.9 0.039 8.5E-07 50.3 4.9 62 234-295 213-274 (280)
165 KOG1128|consensus 94.9 0.049 1.1E-06 55.9 5.9 67 229-295 513-579 (777)
166 COG4783 Putative Zn-dependent 94.7 0.14 3E-06 50.5 8.2 63 231-293 336-398 (484)
167 KOG1840|consensus 94.6 0.087 1.9E-06 52.8 6.7 62 235-296 241-310 (508)
168 KOG1155|consensus 94.4 0.13 2.8E-06 50.6 7.3 65 231-295 360-458 (559)
169 PF05455 GvpH: GvpH; InterPro 94.4 0.3 6.6E-06 42.1 8.7 68 13-81 99-171 (177)
170 PRK10941 hypothetical protein; 94.4 0.2 4.4E-06 46.2 8.2 58 237-294 183-240 (269)
171 KOG2076|consensus 94.3 0.16 3.5E-06 53.2 8.2 59 235-293 139-197 (895)
172 PF13414 TPR_11: TPR repeat; P 94.3 0.071 1.5E-06 37.7 4.1 35 232-266 34-69 (69)
173 KOG2002|consensus 94.3 0.068 1.5E-06 56.4 5.3 66 230-295 159-225 (1018)
174 KOG0545|consensus 94.2 0.12 2.7E-06 47.1 6.3 58 238-295 233-290 (329)
175 cd05804 StaR_like StaR_like; a 94.1 0.22 4.7E-06 46.5 8.1 62 234-295 147-212 (355)
176 PF09976 TPR_21: Tetratricopep 94.0 0.25 5.4E-06 40.6 7.4 61 235-296 85-145 (145)
177 PF06552 TOM20_plant: Plant sp 93.9 0.16 3.4E-06 44.2 6.1 54 231-284 21-84 (186)
178 KOG4555|consensus 93.8 0.33 7.2E-06 40.4 7.4 64 232-295 74-141 (175)
179 PF13174 TPR_6: Tetratricopept 93.7 0.14 3.1E-06 30.5 4.1 31 237-267 2-32 (33)
180 KOG4151|consensus 93.7 0.032 7E-07 57.6 1.8 68 228-295 46-119 (748)
181 COG4105 ComL DNA uptake lipopr 93.6 0.39 8.4E-06 43.9 8.4 63 232-294 31-96 (254)
182 PRK14574 hmsH outer membrane p 93.6 0.26 5.7E-06 52.3 8.4 62 234-295 33-94 (822)
183 COG1729 Uncharacterized protei 93.6 0.32 6.8E-06 44.7 7.8 61 234-294 177-240 (262)
184 PF12688 TPR_5: Tetratrico pep 93.5 0.62 1.4E-05 37.7 8.7 60 236-295 2-64 (120)
185 KOG1128|consensus 93.5 0.081 1.8E-06 54.4 4.1 56 240-295 490-545 (777)
186 PF04733 Coatomer_E: Coatomer 93.5 0.16 3.4E-06 47.4 5.8 57 233-289 199-255 (290)
187 KOG1174|consensus 93.4 0.19 4.2E-06 48.9 6.3 78 217-294 316-393 (564)
188 PF14938 SNAP: Soluble NSF att 93.3 0.14 3E-06 47.2 5.2 62 234-295 113-181 (282)
189 COG4235 Cytochrome c biogenesi 93.3 0.48 1E-05 44.1 8.6 65 229-293 150-251 (287)
190 KOG1308|consensus 93.2 0.041 9E-07 52.1 1.5 69 227-295 140-208 (377)
191 KOG4814|consensus 93.2 0.16 3.6E-06 51.6 5.6 60 236-295 355-420 (872)
192 PF13525 YfiO: Outer membrane 93.0 0.4 8.6E-06 42.0 7.4 52 232-283 39-93 (203)
193 PF12968 DUF3856: Domain of Un 93.0 0.36 7.9E-06 39.3 6.3 58 238-295 12-81 (144)
194 PRK10866 outer membrane biogen 93.0 0.46 1E-05 43.0 7.9 49 235-283 69-120 (243)
195 PF13181 TPR_8: Tetratricopept 92.7 0.22 4.8E-06 30.1 3.8 26 270-295 2-27 (34)
196 COG3063 PilF Tfp pilus assembl 92.6 0.44 9.6E-06 43.0 7.0 62 233-294 67-128 (250)
197 PRK14720 transcript cleavage f 92.6 0.38 8.3E-06 51.4 7.7 59 236-295 117-175 (906)
198 smart00028 TPR Tetratricopepti 92.5 0.18 3.9E-06 28.3 3.1 26 270-295 2-27 (34)
199 PRK11906 transcriptional regul 92.4 0.34 7.4E-06 47.7 6.6 73 216-295 326-398 (458)
200 cd06480 ACD_HspB8_like Alpha-c 92.1 0.85 1.9E-05 35.1 7.2 64 12-75 12-89 (91)
201 PF14559 TPR_19: Tetratricopep 91.9 0.4 8.6E-06 33.6 4.9 46 231-276 21-66 (68)
202 KOG1130|consensus 91.7 0.34 7.3E-06 47.3 5.5 58 234-291 16-77 (639)
203 PRK10747 putative protoheme IX 91.6 0.53 1.1E-05 45.6 6.9 53 241-293 159-211 (398)
204 KOG2002|consensus 91.4 0.64 1.4E-05 49.4 7.5 67 229-295 264-333 (1018)
205 COG4785 NlpI Lipoprotein NlpI, 91.3 0.39 8.4E-06 43.2 5.2 68 227-295 58-125 (297)
206 PRK10747 putative protoheme IX 91.3 0.88 1.9E-05 44.0 8.2 64 231-295 324-387 (398)
207 KOG1155|consensus 91.2 1 2.2E-05 44.5 8.2 63 232-294 429-491 (559)
208 PF12862 Apc5: Anaphase-promot 91.0 0.61 1.3E-05 35.7 5.4 52 244-295 7-67 (94)
209 PF13176 TPR_7: Tetratricopept 90.9 0.39 8.4E-06 30.0 3.6 25 271-295 1-25 (36)
210 TIGR00540 hemY_coli hemY prote 90.8 0.82 1.8E-05 44.3 7.4 64 231-295 329-396 (409)
211 PF14853 Fis1_TPR_C: Fis1 C-te 90.7 1.7 3.6E-05 30.0 6.9 41 238-278 4-44 (53)
212 PF10579 Rapsyn_N: Rapsyn N-te 90.7 1.8 3.9E-05 32.6 7.4 57 236-292 7-66 (80)
213 PF10602 RPN7: 26S proteasome 90.7 1.2 2.6E-05 38.4 7.5 61 235-295 36-99 (177)
214 KOG1130|consensus 90.4 0.1 2.3E-06 50.7 0.8 61 235-295 195-261 (639)
215 PF13374 TPR_10: Tetratricopep 90.1 0.78 1.7E-05 28.5 4.6 30 235-264 2-31 (42)
216 PF13424 TPR_12: Tetratricopep 89.8 0.25 5.4E-06 35.8 2.2 28 268-295 4-31 (78)
217 KOG3785|consensus 89.7 0.55 1.2E-05 45.1 4.9 51 238-288 154-204 (557)
218 KOG1129|consensus 89.6 0.24 5.2E-06 47.0 2.4 63 233-295 322-384 (478)
219 KOG2003|consensus 89.6 0.089 1.9E-06 51.7 -0.4 52 237-289 278-329 (840)
220 PF14938 SNAP: Soluble NSF att 88.4 2.3 5E-05 39.1 8.2 60 235-294 155-221 (282)
221 PF13374 TPR_10: Tetratricopep 88.3 0.91 2E-05 28.2 3.9 27 269-295 2-28 (42)
222 KOG1840|consensus 88.1 1.6 3.4E-05 44.0 7.2 64 232-295 322-393 (508)
223 TIGR00540 hemY_coli hemY prote 88.1 1.6 3.5E-05 42.3 7.2 56 239-294 157-212 (409)
224 KOG4642|consensus 88.0 1 2.2E-05 41.0 5.2 65 231-295 40-104 (284)
225 PF13174 TPR_6: Tetratricopept 87.9 0.64 1.4E-05 27.5 2.8 25 271-295 2-26 (33)
226 PF14863 Alkyl_sulf_dimr: Alky 87.8 2 4.3E-05 35.9 6.5 50 235-284 70-119 (141)
227 COG1729 Uncharacterized protei 87.5 2.6 5.7E-05 38.7 7.7 60 235-294 141-203 (262)
228 COG2912 Uncharacterized conser 87.5 1 2.2E-05 41.5 5.0 57 238-294 184-240 (269)
229 KOG3247|consensus 87.3 0.37 7.9E-06 46.7 2.1 83 4-86 2-88 (466)
230 KOG2376|consensus 87.3 2.5 5.4E-05 42.9 7.9 60 236-295 111-201 (652)
231 PF10300 DUF3808: Protein of u 87.0 1.8 4E-05 43.0 7.0 63 232-294 264-330 (468)
232 KOG3060|consensus 87.0 2.6 5.6E-05 38.8 7.2 53 232-284 151-203 (289)
233 COG2956 Predicted N-acetylgluc 86.6 1.9 4.1E-05 41.0 6.3 62 232-293 211-273 (389)
234 PF07720 TPR_3: Tetratricopept 86.3 2.5 5.5E-05 26.7 4.9 33 236-268 2-36 (36)
235 COG0457 NrfG FOG: TPR repeat [ 85.8 4.7 0.0001 32.2 7.8 61 235-295 167-228 (291)
236 KOG1156|consensus 85.7 1.4 3E-05 45.1 5.3 58 233-290 73-130 (700)
237 cd02683 MIT_1 MIT: domain cont 85.7 2.4 5.1E-05 31.6 5.3 31 234-264 5-35 (77)
238 COG0457 NrfG FOG: TPR repeat [ 85.2 5 0.00011 32.0 7.7 51 244-294 139-192 (291)
239 cd02682 MIT_AAA_Arch MIT: doma 85.0 1.4 3E-05 32.8 3.8 31 234-264 5-35 (75)
240 PLN03098 LPA1 LOW PSII ACCUMUL 84.8 1.1 2.4E-05 44.2 4.1 33 264-296 70-102 (453)
241 PF09295 ChAPs: ChAPs (Chs5p-A 84.5 5 0.00011 39.1 8.5 61 235-295 200-260 (395)
242 PRK10153 DNA-binding transcrip 84.3 3 6.5E-05 42.1 7.1 51 234-284 338-391 (517)
243 PF04733 Coatomer_E: Coatomer 84.2 1.6 3.6E-05 40.6 4.8 58 238-295 166-227 (290)
244 PF14853 Fis1_TPR_C: Fis1 C-te 84.2 1.6 3.5E-05 30.1 3.6 25 271-295 3-27 (53)
245 PF04212 MIT: MIT (microtubule 82.8 2.9 6.2E-05 30.0 4.6 30 235-264 5-34 (69)
246 PF10516 SHNi-TPR: SHNi-TPR; 82.7 2.7 5.9E-05 27.0 3.9 28 237-264 3-30 (38)
247 KOG1127|consensus 82.6 1.1 2.4E-05 47.9 3.3 59 237-295 564-622 (1238)
248 KOG3081|consensus 82.0 5.3 0.00011 37.0 6.9 60 233-292 205-264 (299)
249 KOG3060|consensus 82.0 6.8 0.00015 36.1 7.6 46 248-293 133-178 (289)
250 PF04781 DUF627: Protein of un 81.7 4.6 9.9E-05 32.3 5.7 62 235-296 33-105 (111)
251 PF15015 NYD-SP12_N: Spermatog 80.8 3.4 7.3E-05 40.6 5.5 54 241-294 182-253 (569)
252 cd02678 MIT_VPS4 MIT: domain c 80.6 5.4 0.00012 29.2 5.5 30 235-264 6-35 (75)
253 KOG0546|consensus 80.5 0.56 1.2E-05 44.7 0.2 33 232-264 219-251 (372)
254 KOG1174|consensus 80.2 3.5 7.7E-05 40.4 5.4 61 235-295 300-360 (564)
255 COG4783 Putative Zn-dependent 80.1 7 0.00015 38.8 7.5 63 233-295 304-366 (484)
256 cd02681 MIT_calpain7_1 MIT: do 79.3 2.9 6.2E-05 31.1 3.7 31 234-264 5-35 (76)
257 smart00745 MIT Microtubule Int 79.2 6.9 0.00015 28.5 5.7 30 235-264 8-37 (77)
258 cd02656 MIT MIT: domain contai 78.7 6.9 0.00015 28.5 5.6 30 235-264 6-35 (75)
259 cd02680 MIT_calpain7_2 MIT: do 78.6 3.4 7.3E-05 30.7 3.8 31 235-265 6-36 (75)
260 PF13428 TPR_14: Tetratricopep 78.4 3.7 7.9E-05 26.5 3.6 26 270-295 2-27 (44)
261 cd02684 MIT_2 MIT: domain cont 77.8 3.3 7.2E-05 30.6 3.6 31 234-264 5-35 (75)
262 PF07721 TPR_4: Tetratricopept 77.4 4.6 9.9E-05 23.2 3.4 23 270-292 2-24 (26)
263 KOG4162|consensus 77.2 9.3 0.0002 40.0 7.7 37 233-269 682-718 (799)
264 COG3118 Thioredoxin domain-con 76.4 11 0.00024 35.2 7.4 56 237-292 136-191 (304)
265 KOG4162|consensus 76.4 6 0.00013 41.4 6.1 68 228-295 711-780 (799)
266 COG4700 Uncharacterized protei 76.1 10 0.00022 33.6 6.6 58 236-293 90-148 (251)
267 COG2956 Predicted N-acetylgluc 75.9 14 0.00031 35.3 7.9 61 235-295 180-240 (389)
268 COG3629 DnrI DNA-binding trans 75.6 19 0.00041 33.5 8.7 76 207-294 137-212 (280)
269 PF11817 Foie-gras_1: Foie gra 75.4 9.8 0.00021 34.4 6.8 59 236-294 179-243 (247)
270 KOG1129|consensus 75.2 4.2 9.2E-05 38.8 4.3 64 232-295 392-455 (478)
271 PF14561 TPR_20: Tetratricopep 73.9 11 0.00024 28.7 5.7 37 231-267 18-54 (90)
272 KOG2376|consensus 73.2 8.2 0.00018 39.4 6.0 58 232-293 43-103 (652)
273 PF12569 NARP1: NMDA receptor- 72.8 10 0.00023 38.3 6.8 74 220-293 213-286 (517)
274 KOG1173|consensus 72.5 9.7 0.00021 38.6 6.3 62 234-295 311-372 (611)
275 KOG1127|consensus 72.1 12 0.00027 40.4 7.2 53 241-293 8-61 (1238)
276 PLN03081 pentatricopeptide (PP 71.2 13 0.00029 38.5 7.4 60 235-294 494-553 (697)
277 COG3071 HemY Uncharacterized e 70.3 18 0.00039 35.1 7.4 62 232-294 325-386 (400)
278 cd02677 MIT_SNX15 MIT: domain 70.1 7.9 0.00017 28.6 4.0 30 235-264 6-35 (75)
279 PF12968 DUF3856: Domain of Un 69.4 26 0.00057 28.7 7.1 56 240-295 60-126 (144)
280 COG4105 ComL DNA uptake lipopr 68.9 29 0.00063 31.8 8.1 74 207-281 34-120 (254)
281 PRK14720 transcript cleavage f 68.7 9.6 0.00021 41.1 5.7 43 253-295 100-142 (906)
282 PF03704 BTAD: Bacterial trans 68.3 39 0.00084 27.2 8.3 58 238-295 9-88 (146)
283 PF07079 DUF1347: Protein of u 68.2 38 0.00082 33.8 9.2 57 235-292 462-518 (549)
284 KOG0495|consensus 67.1 11 0.00024 39.1 5.5 63 234-296 684-746 (913)
285 smart00386 HAT HAT (Half-A-TPR 67.1 15 0.00033 20.9 4.2 28 249-276 1-28 (33)
286 PF10516 SHNi-TPR: SHNi-TPR; 66.8 7.1 0.00015 25.0 2.7 26 270-295 2-27 (38)
287 KOG0546|consensus 66.5 2.3 4.9E-05 40.7 0.5 53 243-295 283-335 (372)
288 PRK04841 transcriptional regul 66.3 17 0.00037 38.6 7.1 58 238-295 494-557 (903)
289 KOG4340|consensus 66.0 12 0.00026 35.5 5.1 62 232-293 41-102 (459)
290 COG3071 HemY Uncharacterized e 66.0 29 0.00062 33.8 7.8 57 236-292 154-210 (400)
291 PF10300 DUF3808: Protein of u 65.2 20 0.00044 35.6 7.0 60 235-294 305-372 (468)
292 PF09613 HrpB1_HrpK: Bacterial 64.4 36 0.00079 29.0 7.4 52 234-285 43-94 (160)
293 PF13431 TPR_17: Tetratricopep 63.9 11 0.00024 23.1 3.1 25 231-255 9-33 (34)
294 KOG4563|consensus 63.8 15 0.00032 35.5 5.3 56 234-289 40-103 (400)
295 KOG0985|consensus 63.0 14 0.00031 40.2 5.5 54 234-295 1193-1246(1666)
296 PRK04841 transcriptional regul 60.8 27 0.00059 37.0 7.5 58 238-295 694-757 (903)
297 PRK10941 hypothetical protein; 60.4 31 0.00067 31.8 6.8 47 232-278 212-258 (269)
298 PF15015 NYD-SP12_N: Spermatog 59.7 13 0.00029 36.6 4.3 54 241-294 234-287 (569)
299 KOG1310|consensus 59.4 35 0.00076 34.7 7.3 62 233-294 406-470 (758)
300 PF09986 DUF2225: Uncharacteri 58.9 17 0.00036 32.3 4.6 45 251-295 141-191 (214)
301 KOG0686|consensus 58.4 26 0.00056 34.4 6.0 60 236-295 151-213 (466)
302 KOG0276|consensus 56.6 24 0.00051 36.4 5.6 62 231-292 662-744 (794)
303 KOG1156|consensus 54.6 40 0.00088 34.9 6.9 58 239-296 375-432 (700)
304 PF02064 MAS20: MAS20 protein 54.0 21 0.00046 28.9 4.1 30 238-267 66-95 (121)
305 PF11207 DUF2989: Protein of u 53.6 61 0.0013 28.7 7.2 59 230-289 136-198 (203)
306 PF04184 ST7: ST7 protein; In 52.5 63 0.0014 32.6 7.7 51 240-290 264-316 (539)
307 KOG3824|consensus 51.8 15 0.00032 35.0 3.1 46 232-277 147-192 (472)
308 COG3947 Response regulator con 51.7 52 0.0011 31.1 6.7 53 241-293 285-337 (361)
309 PLN03077 Protein ECB2; Provisi 50.8 64 0.0014 34.3 8.2 58 235-292 657-714 (857)
310 KOG0710|consensus 49.7 32 0.00069 30.1 4.8 73 8-80 85-182 (196)
311 PF08631 SPO22: Meiosis protei 49.2 21 0.00046 32.7 3.8 28 236-263 247-274 (278)
312 KOG4507|consensus 49.2 34 0.00074 35.3 5.4 58 238-295 645-702 (886)
313 KOG3591|consensus 49.1 1E+02 0.0022 26.5 7.8 67 14-80 71-151 (173)
314 PF04781 DUF627: Protein of un 47.6 47 0.001 26.6 5.0 42 241-282 2-46 (111)
315 PF07219 HemY_N: HemY protein 47.2 98 0.0021 24.1 6.9 50 235-284 59-108 (108)
316 PF09670 Cas_Cas02710: CRISPR- 46.6 1.1E+02 0.0024 29.5 8.5 60 235-294 131-194 (379)
317 PF04053 Coatomer_WDAD: Coatom 46.5 65 0.0014 31.9 7.0 63 231-293 343-426 (443)
318 PLN03218 maturation of RBCL 1; 46.3 88 0.0019 34.6 8.5 57 237-293 581-638 (1060)
319 KOG2471|consensus 46.2 11 0.00023 38.0 1.4 67 229-295 277-361 (696)
320 PF01239 PPTA: Protein prenylt 45.2 63 0.0014 19.0 4.5 29 254-282 2-30 (31)
321 PF00244 14-3-3: 14-3-3 protei 45.0 69 0.0015 28.8 6.4 44 252-295 143-195 (236)
322 PF10952 DUF2753: Protein of u 45.0 83 0.0018 25.9 6.1 56 238-293 4-74 (140)
323 PLN03218 maturation of RBCL 1; 43.0 1E+02 0.0023 34.1 8.4 54 238-291 652-706 (1060)
324 TIGR03504 FimV_Cterm FimV C-te 41.5 38 0.00083 22.3 3.1 22 273-294 3-24 (44)
325 PF14561 TPR_20: Tetratricopep 41.1 1.6E+02 0.0034 22.3 7.6 41 254-294 7-47 (90)
326 KOG3824|consensus 40.8 1.2E+02 0.0026 29.1 7.2 55 239-293 120-174 (472)
327 KOG4056|consensus 40.3 51 0.0011 27.5 4.3 34 238-271 84-117 (143)
328 PF07980 SusD: SusD family; I 40.2 31 0.00067 30.4 3.4 26 234-259 132-157 (266)
329 COG2976 Uncharacterized protei 40.1 50 0.0011 29.3 4.4 46 235-284 159-204 (207)
330 KOG3081|consensus 38.4 58 0.0013 30.3 4.8 58 237-294 171-232 (299)
331 PRK15180 Vi polysaccharide bio 38.3 1.5E+02 0.0031 30.2 7.8 61 235-295 289-349 (831)
332 PF06552 TOM20_plant: Plant sp 37.9 74 0.0016 27.8 5.1 40 232-271 66-116 (186)
333 COG2912 Uncharacterized conser 37.2 57 0.0012 30.2 4.6 46 232-277 212-257 (269)
334 TIGR02710 CRISPR-associated pr 36.6 1.5E+02 0.0033 28.8 7.6 56 238-293 133-195 (380)
335 COG2015 Alkyl sulfatase and re 36.1 86 0.0019 31.7 5.8 53 235-287 452-504 (655)
336 PLN03081 pentatricopeptide (PP 35.9 1.2E+02 0.0026 31.5 7.3 55 235-289 290-345 (697)
337 TIGR00985 3a0801s04tom mitocho 35.8 55 0.0012 27.5 3.9 29 239-267 94-123 (148)
338 PF08631 SPO22: Meiosis protei 35.1 1.7E+02 0.0037 26.7 7.5 57 233-289 33-104 (278)
339 COG4235 Cytochrome c biogenesi 34.8 1E+02 0.0022 28.9 5.8 48 248-295 135-182 (287)
340 PRK11906 transcriptional regul 34.4 89 0.0019 31.1 5.7 48 249-296 318-365 (458)
341 cd02679 MIT_spastin MIT: domai 34.0 76 0.0016 23.7 4.0 30 235-264 8-37 (79)
342 KOG2114|consensus 34.0 52 0.0011 35.1 4.2 30 235-264 368-397 (933)
343 KOG3364|consensus 33.9 73 0.0016 26.7 4.2 33 239-271 75-107 (149)
344 COG4455 ImpE Protein of avirul 33.9 1.5E+02 0.0033 27.0 6.6 32 247-278 47-81 (273)
345 KOG2997|consensus 33.8 51 0.0011 31.4 3.7 42 232-273 16-57 (366)
346 PLN03077 Protein ECB2; Provisi 33.7 1E+02 0.0023 32.7 6.6 54 238-292 557-612 (857)
347 TIGR02561 HrpB1_HrpK type III 33.4 1.3E+02 0.0027 25.5 5.7 47 239-285 48-94 (153)
348 KOG3364|consensus 32.9 1.3E+02 0.0029 25.2 5.6 59 236-294 33-96 (149)
349 KOG2471|consensus 32.6 87 0.0019 31.8 5.2 49 233-281 333-381 (696)
350 PF12862 Apc5: Anaphase-promot 32.2 93 0.002 23.4 4.5 32 235-266 41-72 (94)
351 PF04840 Vps16_C: Vps16, C-ter 31.6 99 0.0021 29.2 5.4 53 234-295 236-288 (319)
352 PF08969 USP8_dimer: USP8 dime 31.1 98 0.0021 24.3 4.6 32 234-265 37-68 (115)
353 PF10255 Paf67: RNA polymerase 30.0 99 0.0021 30.4 5.2 56 239-295 126-190 (404)
354 PF05843 Suf: Suppressor of fo 29.9 2.9E+02 0.0062 25.2 8.1 61 235-295 35-96 (280)
355 PRK10316 hypothetical protein; 29.6 3E+02 0.0066 24.5 7.7 59 237-295 129-195 (209)
356 KOG1586|consensus 29.6 1.7E+02 0.0038 26.9 6.3 34 234-267 72-105 (288)
357 KOG4507|consensus 29.0 1E+02 0.0022 31.9 5.2 42 232-273 673-714 (886)
358 KOG0495|consensus 28.1 1.8E+02 0.004 30.6 6.8 53 242-294 658-710 (913)
359 PF08626 TRAPPC9-Trs120: Trans 27.9 78 0.0017 35.4 4.6 50 234-283 241-296 (1185)
360 KOG1585|consensus 26.4 2.5E+02 0.0053 26.1 6.7 55 235-289 110-170 (308)
361 PF10938 YfdX: YfdX protein; 25.7 1.9E+02 0.004 24.3 5.5 60 236-295 76-143 (155)
362 KOG2758|consensus 24.1 2.4E+02 0.0052 27.2 6.4 62 235-296 129-194 (432)
363 COG2976 Uncharacterized protei 23.7 3E+02 0.0066 24.4 6.6 24 272-295 162-185 (207)
364 KOG4151|consensus 23.5 59 0.0013 34.3 2.5 51 243-293 101-151 (748)
365 TIGR00756 PPR pentatricopeptid 23.2 1.4E+02 0.0031 16.7 3.3 23 242-264 7-29 (35)
366 PF09986 DUF2225: Uncharacteri 22.6 3.9E+02 0.0086 23.5 7.3 45 233-277 163-208 (214)
367 smart00101 14_3_3 14-3-3 homol 22.6 2.5E+02 0.0055 25.5 6.1 45 251-295 144-197 (244)
368 KOG2796|consensus 22.5 2.5E+02 0.0054 26.4 6.0 52 242-293 184-236 (366)
369 PF04010 DUF357: Protein of un 21.4 1.9E+02 0.0041 21.3 4.2 27 235-261 35-61 (75)
370 PF04505 Dispanin: Interferon- 21.3 71 0.0015 23.9 2.0 20 238-257 40-59 (82)
371 COG4649 Uncharacterized protei 21.2 2E+02 0.0043 25.4 4.8 44 238-282 170-213 (221)
372 PF14014 DUF4230: Protein of u 20.8 2.9E+02 0.0063 22.5 5.8 37 13-49 44-80 (157)
373 PF01535 PPR: PPR repeat; Int 20.7 1.2E+02 0.0026 16.8 2.6 22 242-263 7-28 (31)
374 PF15469 Sec5: Exocyst complex 20.6 1.1E+02 0.0023 26.0 3.2 23 243-265 94-116 (182)
375 COG4700 Uncharacterized protei 20.5 4.6E+02 0.0099 23.5 6.9 33 234-266 123-155 (251)
376 KOG3783|consensus 20.3 1.7E+02 0.0038 29.7 4.9 61 232-294 264-328 (546)
377 KOG1941|consensus 20.3 1.1E+02 0.0025 29.8 3.5 54 242-295 129-188 (518)
378 COG4976 Predicted methyltransf 20.0 1.3E+02 0.0029 27.6 3.6 28 241-268 35-62 (287)
No 1
>KOG2265|consensus
Probab=99.79 E-value=3.5e-19 Score=149.99 Aligned_cols=111 Identities=20% Similarity=0.263 Sum_probs=92.7
Q ss_pred cCCcEEEeeCCEEEEEEEeC-CC-CCCcceEEeeccEEEEeec--ceEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819 5 VKESCWRQTPSKVFITVPLY-NV-PTHKVDVFTSESYIKLHYG--NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ 80 (296)
Q Consensus 5 ~~~y~W~QT~~~V~i~V~l~-~~-~~~~~~V~~~~~~lkv~~~--~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~ 80 (296)
.+.|+|+||..+|.|.|++| |+ ++++++|.|...+|+|+.. +.+++|+|+++|++++|+|+|+++++++++.|+..
T Consensus 18 ~~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~kg~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K~~ 97 (179)
T KOG2265|consen 18 EEKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLKGQPPILDGELSHSVKVDESTWTIEDGKMIVILLKKSN 97 (179)
T ss_pred ccceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecCCCCceecCccccccccccceEEecCCEEEEEEeeccc
Confidence 47899999999999999998 77 8899999999999999985 56899999999999999999999977776666666
Q ss_pred --cccccc---cc--hhhh--HHHHHhhhhcHHHHHHHHHhHHH
Q psy5819 81 --AMWDEK---KD--KRSK--EAVSVQMKLETQEQTDVSNMKER 115 (296)
Q Consensus 81 --~~W~~L---k~--e~~k--~~~~~~~~le~e~R~~ie~~k~~ 115 (296)
.||.+| .+ +-.+ ...+.+.+||+++|+++|+|.-.
T Consensus 98 ~~eWW~~ll~gep~ID~~ki~~e~skl~dldeEtra~vekmmfd 141 (179)
T KOG2265|consen 98 KMEWWDSLLEGEPEIDTKKIEPEESKLSDLDEETRATVEKMMFD 141 (179)
T ss_pred hHHHHHHHHcCCCCCCccccChhhhhhhhccHHHHHhhhccchh
Confidence 469999 11 1111 12345789999999999999877
No 2
>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins. NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.
Probab=99.77 E-value=2.6e-18 Score=131.21 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=72.7
Q ss_pred cEEEeeCCEEEEEEEeC-CCCCCcceEEeeccEEEEeec--ceEEeecccCCcccCCceEEeeCC-EEEEEEeecCcc-c
Q psy5819 8 SCWRQTPSKVFITVPLY-NVPTHKVDVFTSESYIKLHYG--NYIFEKLLLRPIVEEASRIRLENN-EAEFELIKSEQA-M 82 (296)
Q Consensus 8 y~W~QT~~~V~i~V~l~-~~~~~~~~V~~~~~~lkv~~~--~~~~~~~L~~~Id~e~S~~~i~~~-~v~i~L~K~~~~-~ 82 (296)
|+|+||.++|+|+|++| ++..++++|.++.++|.|++. +.+++|+||++|++++|+|++.++ +|+|+|.|++++ +
T Consensus 1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~~~~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~~~~ 80 (85)
T cd06493 1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALKDQAPLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDEGPT 80 (85)
T ss_pred CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeCCCCeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCCCcc
Confidence 89999999999999996 988999999999999999875 457899999999999999999765 699999999987 6
Q ss_pred cccc
Q psy5819 83 WDEK 86 (296)
Q Consensus 83 W~~L 86 (296)
|++|
T Consensus 81 W~~L 84 (85)
T cd06493 81 WPEL 84 (85)
T ss_pred cccc
Confidence 9987
No 3
>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.76 E-value=4.4e-18 Score=132.10 Aligned_cols=85 Identities=24% Similarity=0.369 Sum_probs=76.8
Q ss_pred CcccCCcEEEeeCCEEEEEEEeC-CCCCCcceEEeeccEEEEeecc-eEEeecccCCcccCCceEEeeCCE-EEEEEeec
Q psy5819 2 PIIVKESCWRQTPSKVFITVPLY-NVPTHKVDVFTSESYIKLHYGN-YIFEKLLLRPIVEEASRIRLENNE-AEFELIKS 78 (296)
Q Consensus 2 p~~~~~y~W~QT~~~V~i~V~l~-~~~~~~~~V~~~~~~lkv~~~~-~~~~~~L~~~Id~e~S~~~i~~~~-v~i~L~K~ 78 (296)
|-....|+|+||.++|+|+|++| |++.++++|.++..+|+|.+.+ .+++|+||++|++++|+|++++++ |+|+|.|.
T Consensus 2 ~~~~~~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~g~~~l~G~L~~~I~~destWtled~k~l~I~L~K~ 81 (93)
T cd06494 2 PCKTPWGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVKGQEVLKGKLFDSVVADECTWTLEDRKLIRIVLTKS 81 (93)
T ss_pred CccCCCcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEECCEEEEcCcccCccCcccCEEEEECCcEEEEEEEeC
Confidence 44568899999999999999998 9999999999999999999763 378999999999999999999998 69999999
Q ss_pred Ccc---ccccc
Q psy5819 79 EQA---MWDEK 86 (296)
Q Consensus 79 ~~~---~W~~L 86 (296)
+.+ +|++|
T Consensus 82 ~~~~~~~W~sl 92 (93)
T cd06494 82 NRDAGNCWKSL 92 (93)
T ss_pred CCCCCcccccc
Confidence 765 69986
No 4
>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
Probab=99.76 E-value=4.4e-18 Score=134.08 Aligned_cols=82 Identities=23% Similarity=0.295 Sum_probs=74.3
Q ss_pred cCCcEEEeeCCEEEEEEEeC-C-CCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCC-EEEEEEe
Q psy5819 5 VKESCWRQTPSKVFITVPLY-N-VPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENN-EAEFELI 76 (296)
Q Consensus 5 ~~~y~W~QT~~~V~i~V~l~-~-~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~-~v~i~L~ 76 (296)
...|+|+||.++|+|+|++| + ++++++.|.++..+|+|++. ..+++|+||++|++++|+|+++++ .|+|+|.
T Consensus 4 ~e~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~ 83 (102)
T cd06495 4 RENYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLS 83 (102)
T ss_pred CCceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEE
Confidence 46899999999999999999 6 46899999999999999984 257899999999999999999995 5899999
Q ss_pred ecCccccccc
Q psy5819 77 KSEQAMWDEK 86 (296)
Q Consensus 77 K~~~~~W~~L 86 (296)
|....||++|
T Consensus 84 K~~~~wW~~v 93 (102)
T cd06495 84 KCSEVWWNAV 93 (102)
T ss_pred ECCCcccchh
Confidence 9987789998
No 5
>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.
Probab=99.74 E-value=1.3e-17 Score=128.07 Aligned_cols=79 Identities=23% Similarity=0.269 Sum_probs=72.5
Q ss_pred cEEEeeCCEEEEEEEeC-C--CCCCcceEEeeccEEEEeec--ceEEeecccCCcccCCceEEeeCC-EEEEEEeecCcc
Q psy5819 8 SCWRQTPSKVFITVPLY-N--VPTHKVDVFTSESYIKLHYG--NYIFEKLLLRPIVEEASRIRLENN-EAEFELIKSEQA 81 (296)
Q Consensus 8 y~W~QT~~~V~i~V~l~-~--~~~~~~~V~~~~~~lkv~~~--~~~~~~~L~~~Id~e~S~~~i~~~-~v~i~L~K~~~~ 81 (296)
|+|+||.++|+|+|++| + +++++++|.++..+|+|+.. +++++|+||++|++++|+|+++++ .|+|+|.|.+++
T Consensus 1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~~~~ 80 (87)
T cd06492 1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLKGQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKINKM 80 (87)
T ss_pred CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEECCCceEEeCcccCcccccccEEEEeCCCEEEEEEEECCCC
Confidence 89999999999999997 4 78899999999999999986 468999999999999999999885 799999999876
Q ss_pred -ccccc
Q psy5819 82 -MWDEK 86 (296)
Q Consensus 82 -~W~~L 86 (296)
+|++|
T Consensus 81 ~wW~~l 86 (87)
T cd06492 81 EWWSRL 86 (87)
T ss_pred cccccc
Confidence 79987
No 6
>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1. The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.
Probab=99.73 E-value=1.7e-17 Score=124.07 Aligned_cols=77 Identities=40% Similarity=0.701 Sum_probs=74.8
Q ss_pred EEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeecceEEeecccCCcccCCceEEeeCCEEEEEEeecCccccccc
Q psy5819 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMWDEK 86 (296)
Q Consensus 10 W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~~~W~~L 86 (296)
|+||++.|+|+|.+||++..+++|.+++.+|+|+..+|.+.++||++|++++|+|++.+++|+|+|.|+++++|++|
T Consensus 1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~~L 77 (78)
T cd06469 1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNFPPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWEAL 77 (78)
T ss_pred CcccCCEEEEEEEeCCCccccceEEEecCEEEEcCCCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccccc
Confidence 99999999999999999999999999999999998889999999999999999999999999999999999899987
No 7
>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins. hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.
Probab=99.73 E-value=1.8e-17 Score=132.03 Aligned_cols=79 Identities=20% Similarity=0.373 Sum_probs=73.0
Q ss_pred CCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------ceEEeecccCCcccCCceEEeeCCEEEEEEeecC
Q psy5819 6 KESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSE 79 (296)
Q Consensus 6 ~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~ 79 (296)
|.|.|+||.++|+|+|+++++ .++.|.++..+|.|++. .|.++++||++|+|++|+|++.+++|+|+|.|++
T Consensus 1 p~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~ 78 (108)
T cd06465 1 PPVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKE 78 (108)
T ss_pred CceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECC
Confidence 469999999999999999997 78999999999988763 2889999999999999999999999999999999
Q ss_pred -ccccccc
Q psy5819 80 -QAMWDEK 86 (296)
Q Consensus 80 -~~~W~~L 86 (296)
+++|++|
T Consensus 79 ~~~~W~~L 86 (108)
T cd06465 79 AGEYWPRL 86 (108)
T ss_pred CCCCCccc
Confidence 7889999
No 8
>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP). CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes
Probab=99.71 E-value=6.7e-17 Score=124.84 Aligned_cols=82 Identities=24% Similarity=0.385 Sum_probs=73.7
Q ss_pred cCCcEEEeeCCEEEEEEEeCCCCC---CcceEEeeccEEEEeec-----ceEEeec-ccCCcccCCceEEeeCCEEEEEE
Q psy5819 5 VKESCWRQTPSKVFITVPLYNVPT---HKVDVFTSESYIKLHYG-----NYIFEKL-LLRPIVEEASRIRLENNEAEFEL 75 (296)
Q Consensus 5 ~~~y~W~QT~~~V~i~V~l~~~~~---~~~~V~~~~~~lkv~~~-----~~~~~~~-L~~~Id~e~S~~~i~~~~v~i~L 75 (296)
+..|+|+||.+.|+|+|+++++.. .++.|.++..+|+|++. +|.+... ||++|++++|+|++.+++|+|+|
T Consensus 1 ~~~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L 80 (92)
T cd06468 1 ITKYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITL 80 (92)
T ss_pred CceeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEE
Confidence 368999999999999999998765 88999999999998863 4667665 99999999999999999999999
Q ss_pred eecCccccccc
Q psy5819 76 IKSEQAMWDEK 86 (296)
Q Consensus 76 ~K~~~~~W~~L 86 (296)
.|+++++|++|
T Consensus 81 ~K~~~~~W~~L 91 (92)
T cd06468 81 AKKKEKKWESL 91 (92)
T ss_pred EeCCCCccCcc
Confidence 99999889987
No 9
>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins. Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext
Probab=99.71 E-value=7.1e-17 Score=122.67 Aligned_cols=79 Identities=23% Similarity=0.335 Sum_probs=73.7
Q ss_pred cEEEeeCCEEEEEEEeC-CCCCCcceEEeeccEEEEeec--ceEEeecccCCcccCCceEEeeC-CEEEEEEeecCcc-c
Q psy5819 8 SCWRQTPSKVFITVPLY-NVPTHKVDVFTSESYIKLHYG--NYIFEKLLLRPIVEEASRIRLEN-NEAEFELIKSEQA-M 82 (296)
Q Consensus 8 y~W~QT~~~V~i~V~l~-~~~~~~~~V~~~~~~lkv~~~--~~~~~~~L~~~Id~e~S~~~i~~-~~v~i~L~K~~~~-~ 82 (296)
|.|+||.++|+|+|++| ++...+++|.+++++|+|++. .+++++.||++|++++|+|++.+ ++|+|+|.|++++ +
T Consensus 1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~~~~ 80 (85)
T cd06467 1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKGGEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNEGEW 80 (85)
T ss_pred CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECCCCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCCCcc
Confidence 89999999999999998 778899999999999999986 57889999999999999999999 9999999999984 7
Q ss_pred cccc
Q psy5819 83 WDEK 86 (296)
Q Consensus 83 W~~L 86 (296)
|++|
T Consensus 81 W~~L 84 (85)
T cd06467 81 WPSL 84 (85)
T ss_pred cccc
Confidence 9987
No 10
>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins. Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C
Probab=99.69 E-value=1.4e-16 Score=122.20 Aligned_cols=80 Identities=23% Similarity=0.299 Sum_probs=73.9
Q ss_pred CcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee-----cceEEeecccCCcccCCceEEeeCCEEEEEEeecCcc
Q psy5819 7 ESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-----GNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQA 81 (296)
Q Consensus 7 ~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-----~~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~~ 81 (296)
+|+|+||.+.|+|+|.++++.+.++.|.++...|.|++ ..|.+.++||++|+|+.|+|++.+++|+|+|.|++++
T Consensus 2 R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~~ 81 (87)
T cd06488 2 RHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEPG 81 (87)
T ss_pred CccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCCC
Confidence 69999999999999999999999999999888877654 2588999999999999999999999999999999988
Q ss_pred ccccc
Q psy5819 82 MWDEK 86 (296)
Q Consensus 82 ~W~~L 86 (296)
.|++|
T Consensus 82 ~W~~L 86 (87)
T cd06488 82 SWAKL 86 (87)
T ss_pred cCccC
Confidence 99987
No 11
>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1). Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug
Probab=99.68 E-value=1.5e-16 Score=120.38 Aligned_cols=78 Identities=28% Similarity=0.365 Sum_probs=73.1
Q ss_pred EEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEeecCcccc
Q psy5819 9 CWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMW 83 (296)
Q Consensus 9 ~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~~~W 83 (296)
+|+||.+.|+|+|++||+...++.|.++.+.|.|++. .|.++++||++|+|++|+|++.+++|+|+|.|++++.|
T Consensus 1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W 80 (84)
T cd06466 1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence 5999999999999999999999999999999988652 58899999999999999999999999999999999889
Q ss_pred ccc
Q psy5819 84 DEK 86 (296)
Q Consensus 84 ~~L 86 (296)
++|
T Consensus 81 ~~L 83 (84)
T cd06466 81 PSL 83 (84)
T ss_pred ccC
Confidence 987
No 12
>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins. hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.
Probab=99.67 E-value=2.6e-16 Score=119.68 Aligned_cols=78 Identities=31% Similarity=0.445 Sum_probs=73.0
Q ss_pred EEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee-----cceEEeecccCCcccCCceEEeeCCEEEEEEeecCcccc
Q psy5819 9 CWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-----GNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMW 83 (296)
Q Consensus 9 ~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-----~~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~~~W 83 (296)
+|+||.+.|+|+|.++|+...++.|.+++..|.+++ ..|.|.++||++|+|++|+|++.+++|+|+|.|++++.|
T Consensus 1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W 80 (84)
T cd06489 1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW 80 (84)
T ss_pred CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence 599999999999999999999999999999988875 268999999999999999999999999999999988889
Q ss_pred ccc
Q psy5819 84 DEK 86 (296)
Q Consensus 84 ~~L 86 (296)
++|
T Consensus 81 ~~L 83 (84)
T cd06489 81 SKL 83 (84)
T ss_pred ccC
Confidence 987
No 13
>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown. The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....
Probab=99.63 E-value=2.8e-15 Score=111.31 Aligned_cols=72 Identities=25% Similarity=0.392 Sum_probs=64.3
Q ss_pred CCcEEEeeCCEEEEEEEeCCC--CCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEee
Q psy5819 6 KESCWRQTPSKVFITVPLYNV--PTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIK 77 (296)
Q Consensus 6 ~~y~W~QT~~~V~i~V~l~~~--~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K 77 (296)
|+|.|+||.+.|+|+|++++. ...+++|.+++.+|+|.+. .|.++++||++|++++|+|++.+++|+|+|.|
T Consensus 1 ~~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K 79 (79)
T PF04969_consen 1 PRYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK 79 (79)
T ss_dssp SSEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred CCeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence 689999999999999999644 4889999999999999864 58889999999999999999999999999987
No 14
>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1. Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of
Probab=99.61 E-value=2.9e-15 Score=112.17 Aligned_cols=77 Identities=31% Similarity=0.486 Sum_probs=71.5
Q ss_pred EEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee-----cceEEeecccCCcccCCceEEeeCCEEEEEEeecCc-ccc
Q psy5819 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-----GNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ-AMW 83 (296)
Q Consensus 10 W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-----~~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~-~~W 83 (296)
|+||.+.|+|+|++|++...+++|.+++++|+|.+ .+|.++++|+++|+++.|+|++.+++|+|+|.|+.+ ++|
T Consensus 1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W 80 (84)
T cd06463 1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW 80 (84)
T ss_pred CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence 99999999999999988889999999988888776 468999999999999999999999999999999998 679
Q ss_pred ccc
Q psy5819 84 DEK 86 (296)
Q Consensus 84 ~~L 86 (296)
++|
T Consensus 81 ~~l 83 (84)
T cd06463 81 PRL 83 (84)
T ss_pred ccc
Confidence 987
No 15
>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.
Probab=99.61 E-value=4e-15 Score=118.26 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=70.7
Q ss_pred CCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819 6 KESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ 80 (296)
Q Consensus 6 ~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~ 80 (296)
|.+.|+|+.+.|+|||.++++ .++.|.+++.+|.++.. .|.++++||++|+|++|++++++.+|+|.|.|+++
T Consensus 2 p~v~WaQr~~~V~ltI~v~d~--~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~ 79 (106)
T cd00237 2 AKTLWYDRRDYVFIEFCVEDS--KDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKE 79 (106)
T ss_pred CcceeeECCCEEEEEEEeCCC--CCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCC
Confidence 679999999999999999995 57888888888877752 48889999999999999999999999999999986
Q ss_pred c-ccccc
Q psy5819 81 A-MWDEK 86 (296)
Q Consensus 81 ~-~W~~L 86 (296)
+ .||+|
T Consensus 80 ~~~WprL 86 (106)
T cd00237 80 GVAWPRL 86 (106)
T ss_pred CCCCchh
Confidence 6 69999
No 16
>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins. NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.
Probab=99.45 E-value=4.7e-13 Score=102.69 Aligned_cols=78 Identities=23% Similarity=0.273 Sum_probs=64.0
Q ss_pred cEEEeeCCEEEEEEEeCC--CCCCcceEEeeccEEEEeec----ceEEeecccCCcccCCceEEee--CCEEEEEEeecC
Q psy5819 8 SCWRQTPSKVFITVPLYN--VPTHKVDVFTSESYIKLHYG----NYIFEKLLLRPIVEEASRIRLE--NNEAEFELIKSE 79 (296)
Q Consensus 8 y~W~QT~~~V~i~V~l~~--~~~~~~~V~~~~~~lkv~~~----~~~~~~~L~~~Id~e~S~~~i~--~~~v~i~L~K~~ 79 (296)
|+|+||.+.|+|+|..++ .....+.+......|.|.+. .|.++++|+++|+++. ++++. .++|||.|.|++
T Consensus 1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~e 79 (87)
T cd06490 1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILGDKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKKE 79 (87)
T ss_pred CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECCCceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcCC
Confidence 799999999999999985 44455556667767777752 4788889999998665 88887 569999999999
Q ss_pred ccccccc
Q psy5819 80 QAMWDEK 86 (296)
Q Consensus 80 ~~~W~~L 86 (296)
++.|++|
T Consensus 80 ~~~W~~L 86 (87)
T cd06490 80 PEKWTSL 86 (87)
T ss_pred CCccccC
Confidence 9889987
No 17
>KOG0553|consensus
Probab=99.43 E-value=2.1e-13 Score=124.62 Aligned_cols=64 Identities=30% Similarity=0.481 Sum_probs=61.3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
..++.||.+||.+++.++|++|+.+|++||.++|.++.+|+|||++|.+||.|..||+||..|.
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al 142 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL 142 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999999999873
No 18
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.42 E-value=4.5e-13 Score=127.81 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=76.0
Q ss_pred CCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819 6 KESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ 80 (296)
Q Consensus 6 ~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~ 80 (296)
.+|+|+||.+.|+|+|.++|+...++.|.++...|.|.+. .|.|.+.||++|+|+.|+++|..++|+|+|.|+++
T Consensus 157 ~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~Kiei~l~K~~~ 236 (356)
T PLN03088 157 YRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVLSTKIEIRLAKAEP 236 (356)
T ss_pred cccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEecceEEEEEecCCC
Confidence 6799999999999999999999999999999998888762 68889999999999999999999999999999998
Q ss_pred cccccc
Q psy5819 81 AMWDEK 86 (296)
Q Consensus 81 ~~W~~L 86 (296)
+.|++|
T Consensus 237 ~~W~~L 242 (356)
T PLN03088 237 ITWASL 242 (356)
T ss_pred CCcccc
Confidence 889999
No 19
>KOG1309|consensus
Probab=99.40 E-value=5.4e-13 Score=113.08 Aligned_cols=81 Identities=28% Similarity=0.406 Sum_probs=75.1
Q ss_pred CCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----ceEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819 6 KESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ 80 (296)
Q Consensus 6 ~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~ 80 (296)
.+|+|+||.+.|+|+|..+++...+|+|.++.+.|++... .|.+.+.|||+|.|+.|++++...+|+|+|.|.+.
T Consensus 4 ~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~~~ 83 (196)
T KOG1309|consen 4 IRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKAEI 83 (196)
T ss_pred ccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccccc
Confidence 4799999999999999999999999999999988887763 48889999999999999999999999999999877
Q ss_pred cccccc
Q psy5819 81 AMWDEK 86 (296)
Q Consensus 81 ~~W~~L 86 (296)
..|..|
T Consensus 84 irW~~L 89 (196)
T KOG1309|consen 84 IRWESL 89 (196)
T ss_pred hhhhhh
Confidence 779999
No 20
>KOG0551|consensus
Probab=99.37 E-value=5.3e-13 Score=123.32 Aligned_cols=84 Identities=32% Similarity=0.432 Sum_probs=72.7
Q ss_pred HHHHHHHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHH
Q psy5819 212 QKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----LACLYSNRAAAHLALNNLHK 287 (296)
Q Consensus 212 ~~~~~a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----~~~ly~NRA~~~lkl~~~~~ 287 (296)
.+..++++++.++...-.+.+ .|..+|+.||.+|+.++|..|+.+||++|+.... ++.||+|||+|++.+|||..
T Consensus 59 ~~~~~~LqslK~da~E~ep~E-~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs 137 (390)
T KOG0551|consen 59 NPDNVCLQSLKADAEEGEPHE-QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRS 137 (390)
T ss_pred CccHHHHHHhhhccccCChHH-HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHH
Confidence 445567888888755555555 6899999999999999999999999999987654 67999999999999999999
Q ss_pred HHHHHHhcC
Q psy5819 288 AVDDASEVR 296 (296)
Q Consensus 288 Ai~D~~~A~ 296 (296)
||.||++||
T Consensus 138 ~l~Dcs~al 146 (390)
T KOG0551|consen 138 ALNDCSAAL 146 (390)
T ss_pred HHHHHHHHH
Confidence 999999986
No 21
>KOG0547|consensus
Probab=99.28 E-value=4.4e-12 Score=122.16 Aligned_cols=63 Identities=32% Similarity=0.614 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.+..+|.+||.+|++|+|.+||.+|++||.++|+.+.+|+|||+||..+|+|.+.++||++|.
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkAL 176 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKAL 176 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHh
Confidence 478899999999999999999999999999999999999999999999999999999999874
No 22
>KOG0548|consensus
Probab=99.26 E-value=1e-11 Score=120.73 Aligned_cols=62 Identities=35% Similarity=0.541 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
+...+.+||++|+.|+|..|+..|++||..+|+++.+|+|||+||++||++..|+.||..++
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~i 419 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCI 419 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999998864
No 23
>KOG4234|consensus
Probab=99.20 E-value=2.8e-11 Score=105.48 Aligned_cols=64 Identities=38% Similarity=0.674 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----ChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN-----LACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~-----~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
..+..||..||.+|++|+|..|...|+.||.++|. ...||+|||+|+++|+.+..||.||++|+
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai 161 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI 161 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH
Confidence 35788999999999999999999999999999996 45999999999999999999999999984
No 24
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.18 E-value=7.8e-11 Score=85.16 Aligned_cols=63 Identities=25% Similarity=0.389 Sum_probs=60.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcC-CHHHHHHHHHhcC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALN-NLHKAVDDASEVR 296 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~-~~~~Ai~D~~~A~ 296 (296)
+|..+...|..++..|+|..|+.+|++||+++|+++.+|+|||.||+.+| ++.+|+.++.+|+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999 7999999999873
No 25
>KOG4648|consensus
Probab=99.12 E-value=4.4e-11 Score=111.36 Aligned_cols=62 Identities=26% Similarity=0.457 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+..+|++||.||++|.|.+||.||+++|.++|.++.+|.|||.+|++++.|.-|..||+.|
T Consensus 96 ~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A 157 (536)
T KOG4648|consen 96 KASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAA 157 (536)
T ss_pred hhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence 35568999999999999999999999999999999999999999999999999999999987
No 26
>KOG3158|consensus
Probab=99.08 E-value=1.7e-10 Score=97.44 Aligned_cols=91 Identities=22% Similarity=0.188 Sum_probs=75.9
Q ss_pred cccCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------ceEEeecccCCcccCCceEEeeCCEEEEEEe
Q psy5819 3 IIVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------NYIFEKLLLRPIVEEASRIRLENNEAEFELI 76 (296)
Q Consensus 3 ~~~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~ 76 (296)
+++|...|+|+.+-|+|+|-|.+.+ +++|.+.+.+|.+++. .|..+++||+.|||++|++++.+..|...|+
T Consensus 5 ~~~p~v~Waqr~~~vyltv~Ved~~--d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~ 82 (180)
T KOG3158|consen 5 MQPPEVKWAQRRDLVYLTVCVEDAK--DVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILR 82 (180)
T ss_pred ccCCcchhhhhcCeEEEEEEeccCc--cceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEE
Confidence 4679999999999999999999864 6777777777777753 2556799999999999999999999999999
Q ss_pred ecCcc-ccccc----------cchhhhHHH
Q psy5819 77 KSEQA-MWDEK----------KDKRSKEAV 95 (296)
Q Consensus 77 K~~~~-~W~~L----------k~e~~k~~~ 95 (296)
|++.+ .||+| +.++++|..
T Consensus 83 K~e~~~~WprLtkeK~K~hwLkvDFdkW~D 112 (180)
T KOG3158|consen 83 KKELGEYWPRLTKEKAKLHWLKVDFDKWVD 112 (180)
T ss_pred ccccccccchhhhcccccceEEcchhhccc
Confidence 99885 59999 357777743
No 27
>KOG1667|consensus
Probab=99.00 E-value=9.7e-10 Score=97.87 Aligned_cols=83 Identities=17% Similarity=0.220 Sum_probs=73.9
Q ss_pred ccCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------ceEEeecccCCcccCCceEEeeCCEEEEEEee
Q psy5819 4 IVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------NYIFEKLLLRPIVEEASRIRLENNEAEFELIK 77 (296)
Q Consensus 4 ~~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K 77 (296)
.--+|+|.||.+.|+|+|+.++.-+..-.|..+...|.|++. .|-++++|++-|+++.|...+..++|+|+|.|
T Consensus 213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k 292 (320)
T KOG1667|consen 213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLKK 292 (320)
T ss_pred ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEec
Confidence 345899999999999999999988888888888888887752 34557779999999999999999999999999
Q ss_pred cCccccccc
Q psy5819 78 SEQAMWDEK 86 (296)
Q Consensus 78 ~~~~~W~~L 86 (296)
++++.|++|
T Consensus 293 ~ep~sWa~L 301 (320)
T KOG1667|consen 293 AEPGSWARL 301 (320)
T ss_pred cCCCCcccc
Confidence 999999999
No 28
>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind
Probab=98.97 E-value=2e-09 Score=78.50 Aligned_cols=68 Identities=28% Similarity=0.343 Sum_probs=62.4
Q ss_pred EEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee------------cceEEeecccCCcccCCceEEeeCCEEEEEEee
Q psy5819 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY------------GNYIFEKLLLRPIVEEASRIRLENNEAEFELIK 77 (296)
Q Consensus 10 W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~------------~~~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K 77 (296)
|+|+.+.|+|+|.+||....+++|.+..+.|.|.. ..|.+.+.|+++|+++.++|++.++.|+|.|.|
T Consensus 1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K 80 (80)
T cd00298 1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK 80 (80)
T ss_pred CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence 99999999999999999899999999988887773 357789999999999999999999999999987
No 29
>KOG4642|consensus
Probab=98.93 E-value=5.9e-10 Score=99.33 Aligned_cols=63 Identities=27% Similarity=0.498 Sum_probs=60.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.+..++++||.+|....|..||++|++||.++|..+++|-|||.||+++++|..+..||.+|+
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrral 71 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRAL 71 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999874
No 30
>KOG0548|consensus
Probab=98.93 E-value=1e-09 Score=106.91 Aligned_cols=62 Identities=34% Similarity=0.552 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
+..++.+||.+|..|+|..||.+|+.||.++|.+..+|+||++||.++|+|.+|+.|..++|
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~ 63 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTR 63 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHH
Confidence 45689999999999999999999999999999999999999999999999999999998864
No 31
>KOG3260|consensus
Probab=98.83 E-value=4.3e-09 Score=89.44 Aligned_cols=82 Identities=26% Similarity=0.303 Sum_probs=72.9
Q ss_pred cCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee-----cceEE-eecccCCcccCCceEEeeCCEEEEEEeec
Q psy5819 5 VKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-----GNYIF-EKLLLRPIVEEASRIRLENNEAEFELIKS 78 (296)
Q Consensus 5 ~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-----~~~~~-~~~L~~~Id~e~S~~~i~~~~v~i~L~K~ 78 (296)
+..|.|.|+..+|.++|.|.|+...+|.|.+++.+|.+.+ ..|-+ ...|++||+++.|+-+|..+.|.|.++|.
T Consensus 74 vt~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkV 153 (224)
T KOG3260|consen 74 VTLYGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKV 153 (224)
T ss_pred hhhcCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhh
Confidence 4679999999999999999999999999999998876654 35655 44699999999999999999999999888
Q ss_pred Cccccccc
Q psy5819 79 EQAMWDEK 86 (296)
Q Consensus 79 ~~~~W~~L 86 (296)
+...|+-|
T Consensus 154 e~~rwd~L 161 (224)
T KOG3260|consen 154 ENTRWDYL 161 (224)
T ss_pred hcccchHH
Confidence 88889999
No 32
>KOG0550|consensus
Probab=98.77 E-value=8.1e-09 Score=98.22 Aligned_cols=62 Identities=34% Similarity=0.586 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----LACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
-...+.+||.+|++|+|..|-++|+.||.++|+ ++.||.|||+++++||+..+||.||+.|.
T Consensus 249 le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 249 LEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred HHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 456789999999999999999999999999997 67999999999999999999999999873
No 33
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.57 E-value=1.7e-07 Score=89.59 Aligned_cols=58 Identities=36% Similarity=0.585 Sum_probs=30.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
|+.+|+.+|..|+|..|+.+|++||.++|.++.+|+|||.||+.+|+|..|+.+|.+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A 62 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKA 62 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555555555555443
No 34
>KOG0376|consensus
Probab=98.56 E-value=3.4e-08 Score=95.66 Aligned_cols=63 Identities=30% Similarity=0.452 Sum_probs=60.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.+..++++||.+|+.+.|..|+..|++||+++|+.+.+|.|||++|++.++|..|++||.+|.
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kai 65 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAI 65 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhh
Confidence 367789999999999999999999999999999999999999999999999999999999874
No 35
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=98.55 E-value=1.7e-07 Score=95.44 Aligned_cols=62 Identities=32% Similarity=0.551 Sum_probs=57.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.+..+++.|+.+|+.|+|..||..|++||.++|+ +.+|+|+|.||+++|+|.+|+.+|++|+
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al 187 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAAL 187 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3677999999999999999999999999999995 7899999999999999999999999873
No 36
>KOG4379|consensus
Probab=98.53 E-value=1.7e-07 Score=89.69 Aligned_cols=82 Identities=20% Similarity=0.335 Sum_probs=72.6
Q ss_pred cCCcEEEeeCCEEEEEEEeC-CCCCCcceEEeeccEEEEeecc-eEEeecccCCcccCCceEEeeC-CEEEEEEeecCcc
Q psy5819 5 VKESCWRQTPSKVFITVPLY-NVPTHKVDVFTSESYIKLHYGN-YIFEKLLLRPIVEEASRIRLEN-NEAEFELIKSEQA 81 (296)
Q Consensus 5 ~~~y~W~QT~~~V~i~V~l~-~~~~~~~~V~~~~~~lkv~~~~-~~~~~~L~~~Id~e~S~~~i~~-~~v~i~L~K~~~~ 81 (296)
.|-|.|.||.++|+|++.+| ..+...+.|.....+|-|.+.. -.|+|.||+.|+.+.|.|.|.. +++++.|.|++.+
T Consensus 289 ~p~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~de~ 368 (596)
T KOG4379|consen 289 PPSYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHLDHVIFDGELYASVGHELSAFIIAEANGLELSLTKADEI 368 (596)
T ss_pred CccceeeeccCcceEEEecccccccceEEEEecCceEEEEeeeeEEeccchhhhccccchhhhhhhhccceEEEeecccc
Confidence 58899999999999999999 6667788888888888777654 4779999999999999999987 8999999999777
Q ss_pred c-cccc
Q psy5819 82 M-WDEK 86 (296)
Q Consensus 82 ~-W~~L 86 (296)
. |++|
T Consensus 369 ~twprL 374 (596)
T KOG4379|consen 369 QTWPRL 374 (596)
T ss_pred cccchh
Confidence 5 9999
No 37
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.51 E-value=5.2e-07 Score=87.61 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=60.7
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC---LYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~---ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
....+..+.+.|..+|..|+|++|+.+|++||.++|+++. +|+|+|.||.++|++.+|+.++.+|
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4556899999999999999999999999999999999985 5999999999999999999999887
No 38
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=7.1e-07 Score=74.39 Aligned_cols=65 Identities=12% Similarity=-0.016 Sum_probs=61.0
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...++..+...|..+...|+|.+|+.+|.+|+.++|.++..++|+|.|+..+|++.+|+..+..|
T Consensus 54 ~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 54 QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34467889999999999999999999999999999999999999999999999999999999876
No 39
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.45 E-value=6.4e-07 Score=65.05 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=51.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 242 GDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 242 Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+.+++.++|..|+.++..+|.++|.++.++.++|.||..+|+|.+|+.+++.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~ 55 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERA 55 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999999999999876
No 40
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.40 E-value=9.1e-07 Score=62.99 Aligned_cols=56 Identities=14% Similarity=0.218 Sum_probs=52.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 240 AKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 240 ~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..|..++..|+|.+|+..|.++++.+|.++.+++.+|.|++.+|++.+|+..+.++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999888765
No 41
>KOG0543|consensus
Probab=98.40 E-value=4.8e-07 Score=86.18 Aligned_cols=63 Identities=22% Similarity=0.347 Sum_probs=56.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------------ChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---------------LACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---------------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.+...|++||.+|+.|+|..|+..|.+|+..-.. ...+|+|.|+||+||+.|..||.-|++|+
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL 284 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL 284 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3678899999999999999999999999976441 23899999999999999999999999874
No 42
>KOG0550|consensus
Probab=98.27 E-value=6.2e-07 Score=85.58 Aligned_cols=62 Identities=29% Similarity=0.599 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.++.++.+||.+++..+|..|+..|+.||+++|+++..|.|||+|++.+++|..|+-|+.+.
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~ 109 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQS 109 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhh
Confidence 37889999999999999999999999999999999999999999999999999999998654
No 43
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.23 E-value=4.1e-06 Score=59.89 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=46.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 245 MFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 245 ~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+++.|+|.+|+..|.+++..+|++..++++.|.||++.|++.+|..-+.++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999887654
No 44
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.22 E-value=4.7e-06 Score=70.52 Aligned_cols=63 Identities=19% Similarity=0.103 Sum_probs=56.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.++..+.+.|-.+-..|+|.+||.+|..|+.++|+++..|.|.|.|++++|+...|..-+..|
T Consensus 67 ~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 67 WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357788999999999999999999999999999999999999999999999988888777655
No 45
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.17 E-value=8.8e-06 Score=67.76 Aligned_cols=61 Identities=21% Similarity=0.208 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
|..+...|..++..|+|..|+..|.+++.++|.++.+|.++|.++..+|++.+|+..+.+|
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A 84 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHA 84 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4457788999999999999999999999999999999999999999999999999999876
No 46
>KOG4555|consensus
Probab=98.16 E-value=6.9e-06 Score=67.58 Aligned_cols=61 Identities=26% Similarity=0.346 Sum_probs=56.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..|--+|-.+-..|+...|++.|++||.+.|..+++|+|||.++--.|+..+|+.|.++|
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~A 103 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKA 103 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHH
Confidence 4556677888899999999999999999999999999999999999999999999999987
No 47
>KOG0545|consensus
Probab=98.14 E-value=2.8e-06 Score=76.52 Aligned_cols=64 Identities=20% Similarity=0.319 Sum_probs=55.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CC----------CChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL--------CP----------NLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--------~p----------~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
..+...|.++||.+|+.|+|.+|+.+|..||-. -| ....+|.|-|.|++..|+|.++++.|+
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 345677999999999999999999999999843 22 255999999999999999999999998
Q ss_pred hc
Q psy5819 294 EV 295 (296)
Q Consensus 294 ~A 295 (296)
.+
T Consensus 255 ei 256 (329)
T KOG0545|consen 255 EI 256 (329)
T ss_pred HH
Confidence 65
No 48
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.12 E-value=1.3e-05 Score=74.47 Aligned_cols=65 Identities=25% Similarity=0.228 Sum_probs=59.8
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
....+..+...|..+...|+|.+|+..|.+||+++|++..+|.|||.+++..|++.+|+.++.++
T Consensus 94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999875
No 49
>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st
Probab=98.04 E-value=2.6e-05 Score=60.03 Aligned_cols=70 Identities=16% Similarity=0.208 Sum_probs=59.9
Q ss_pred cEEEeeCCEEEEEEEeCCCCCCcceEEeec-cEEEEeec--------------------ceEEeecccCCcccCCceEEe
Q psy5819 8 SCWRQTPSKVFITVPLYNVPTHKVDVFTSE-SYIKLHYG--------------------NYIFEKLLLRPIVEEASRIRL 66 (296)
Q Consensus 8 y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~-~~lkv~~~--------------------~~~~~~~L~~~Id~e~S~~~i 66 (296)
++|.+|++.+.|.+.|||+++.+++|.+.. +.|.|+.. .|.-.+.|..+|+++..++++
T Consensus 2 ~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~~ 81 (92)
T cd06472 2 VDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAFL 81 (92)
T ss_pred ccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEEE
Confidence 689999999999999999999999999976 47777652 123366799999999999999
Q ss_pred eCCEEEEEEee
Q psy5819 67 ENNEAEFELIK 77 (296)
Q Consensus 67 ~~~~v~i~L~K 77 (296)
.+|.|.|+|.|
T Consensus 82 ~nGvL~I~lPK 92 (92)
T cd06472 82 ENGVLTVTVPK 92 (92)
T ss_pred ECCEEEEEecC
Confidence 99999999976
No 50
>KOG1308|consensus
Probab=97.98 E-value=1.4e-06 Score=81.52 Aligned_cols=63 Identities=25% Similarity=0.435 Sum_probs=59.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.+...+.++.+++..|.++.||..|+.||.++|..+.+|.+|+.+|++|+.+..||+||+.|.
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ 175 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI 175 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhh
Confidence 356788999999999999999999999999999999999999999999999999999999873
No 51
>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=5.1e-05 Score=63.52 Aligned_cols=77 Identities=14% Similarity=0.108 Sum_probs=67.6
Q ss_pred cCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--c------------------eEEeecccCCcccCCceE
Q psy5819 5 VKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--N------------------YIFEKLLLRPIVEEASRI 64 (296)
Q Consensus 5 ~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--~------------------~~~~~~L~~~Id~e~S~~ 64 (296)
.|.|.+.+|++.+.|++.|||+...+++|.+..+.|.|... . |.-.+.|...|+++..++
T Consensus 40 ~P~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A 119 (146)
T COG0071 40 TPPVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKA 119 (146)
T ss_pred CCcEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceee
Confidence 47899999999999999999999999999999998888752 1 223667999999999999
Q ss_pred EeeCCEEEEEEeecCcc
Q psy5819 65 RLENNEAEFELIKSEQA 81 (296)
Q Consensus 65 ~i~~~~v~i~L~K~~~~ 81 (296)
++.+|.|.|+|.|.++.
T Consensus 120 ~~~nGvL~I~lpk~~~~ 136 (146)
T COG0071 120 KYKNGLLTVTLPKAEPE 136 (146)
T ss_pred EeeCcEEEEEEeccccc
Confidence 99999999999998764
No 52
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.95 E-value=3.3e-05 Score=62.37 Aligned_cols=64 Identities=20% Similarity=0.142 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..++..+...|..++..|+|.+|+..|.+++..+|.++..++++|.||+.+|++..|+..+..+
T Consensus 48 p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 48 PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4457778888888888888888888888888888888888888888888888888888877664
No 53
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.94 E-value=4.3e-05 Score=61.65 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=58.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
++..+...|..++..|+|..|+..|.+++..+|.++.++.++|.|++.+|++..|+..+.++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999988765
No 54
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=97.93 E-value=4.1e-06 Score=76.05 Aligned_cols=80 Identities=15% Similarity=0.162 Sum_probs=71.8
Q ss_pred CcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeecc------eEEeecccCCcccCCceEEeeCCEEEEEEeecCc
Q psy5819 7 ESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGN------YIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQ 80 (296)
Q Consensus 7 ~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~~------~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~ 80 (296)
+|.|+||...+.|.|.-+.+...+|.+.++.+.|+|++.+ +.+...||+.|+|+.+..++-+.+++++|.|.+.
T Consensus 178 ~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~ev~P~~~s~k~fsK~~e~~l~KV~~ 257 (368)
T COG5091 178 AYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVEM 257 (368)
T ss_pred eeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhhhcCcchhhhhhcchhheehhhhhhh
Confidence 7999999999999999998889999999999999999853 2346679999999999999999999999999988
Q ss_pred cccccc
Q psy5819 81 AMWDEK 86 (296)
Q Consensus 81 ~~W~~L 86 (296)
..|..|
T Consensus 258 v~W~~l 263 (368)
T COG5091 258 VRWGGL 263 (368)
T ss_pred hhhccc
Confidence 789999
No 55
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.92 E-value=1e-05 Score=50.85 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=31.6
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Q psy5819 257 AYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289 (296)
Q Consensus 257 ~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai 289 (296)
+|.+||+++|+++.+|+|+|.+|...|++.+|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 489999999999999999999999999999986
No 56
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.91 E-value=2.5e-05 Score=57.49 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=52.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C----CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC---P----NLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~---p----~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..+...|..++..|+|.+|+..|.+|+.+. + ..+.++.|.|.||..+|++.+|+.-+.+|
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4568889999999999999999999999762 1 24689999999999999999999988876
No 57
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.87 E-value=2.7e-05 Score=58.44 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+..+...|..+|+.|+|..|+..+.+ +..++.+..+.+-.|.|++++|+|.+|+.-+.+|
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 355677799999999999999999999 8899988888888899999999999999987764
No 58
>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.83 E-value=7.7e-05 Score=55.89 Aligned_cols=68 Identities=15% Similarity=0.144 Sum_probs=60.0
Q ss_pred EEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEee-------------------cceEEeecccCCcccCCceEEeeCCE
Q psy5819 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-------------------GNYIFEKLLLRPIVEEASRIRLENNE 70 (296)
Q Consensus 10 W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-------------------~~~~~~~~L~~~Id~e~S~~~i~~~~ 70 (296)
+.++.+.+.|.|.|||+...+++|.+....|.|.. ..|.-...|...|+++..++.+.++.
T Consensus 2 i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G~ 81 (88)
T cd06464 2 VYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENGV 81 (88)
T ss_pred cEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCCE
Confidence 67889999999999999999999999999998873 22445778999999999999999999
Q ss_pred EEEEEee
Q psy5819 71 AEFELIK 77 (296)
Q Consensus 71 v~i~L~K 77 (296)
|.|++.|
T Consensus 82 L~I~~pk 88 (88)
T cd06464 82 LTITLPK 88 (88)
T ss_pred EEEEEcC
Confidence 9999875
No 59
>PRK11189 lipoprotein NlpI; Provisional
Probab=97.81 E-value=8.7e-05 Score=69.01 Aligned_cols=63 Identities=19% Similarity=0.137 Sum_probs=59.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..+..+..+|..+...|++..|+..|++||.++|+++.+|+++|.+|..+|++..|+..+.+|
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~A 124 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSV 124 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999999999999999999999876
No 60
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=9.1e-05 Score=53.02 Aligned_cols=63 Identities=24% Similarity=0.325 Sum_probs=53.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..+..+...|..++..|++..|+..|..++...|.+..++.+.|.+++.+|++..|+..+..+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 32 DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344667788899999999999999999999999988888899999999999999998877654
No 61
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.76 E-value=0.00012 Score=62.08 Aligned_cols=61 Identities=8% Similarity=-0.057 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
-+.+..-|..++..|+|.+|...|.-...++|.++..|+|.|+|+-.+|+|.+||.-+..|
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999999988776
No 62
>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry.; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....
Probab=97.75 E-value=0.00027 Score=55.04 Aligned_cols=73 Identities=11% Similarity=0.124 Sum_probs=58.9
Q ss_pred EEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------------------ceEEeecccCCcccCCceEEeeCCE
Q psy5819 9 CWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------------------NYIFEKLLLRPIVEEASRIRLENNE 70 (296)
Q Consensus 9 ~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------------------~~~~~~~L~~~Id~e~S~~~i~~~~ 70 (296)
+|.++.+.+.|.+.|||+...+++|.+....|.|+.. .|.-.+.|...||++..++++.+|.
T Consensus 1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv 80 (102)
T PF00011_consen 1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV 80 (102)
T ss_dssp EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence 5899999999999999999999999999999988752 1233667999999999999999999
Q ss_pred EEEEEeecCcc
Q psy5819 71 AEFELIKSEQA 81 (296)
Q Consensus 71 v~i~L~K~~~~ 81 (296)
|.|++.|....
T Consensus 81 L~I~~pk~~~~ 91 (102)
T PF00011_consen 81 LTITIPKKEEE 91 (102)
T ss_dssp EEEEEEBSSSC
T ss_pred EEEEEEccccc
Confidence 99999998653
No 63
>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18.5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me
Probab=97.72 E-value=0.00017 Score=55.41 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=58.2
Q ss_pred CcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec------------ce--------EE--eecccCCcccCCceE
Q psy5819 7 ESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG------------NY--------IF--EKLLLRPIVEEASRI 64 (296)
Q Consensus 7 ~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~------------~~--------~~--~~~L~~~Id~e~S~~ 64 (296)
..+|.+|++.+.|.+.|||+...+++|.+..+.|.|+.. .| .| ...|. .|+++..++
T Consensus 2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A 80 (93)
T cd06471 2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA 80 (93)
T ss_pred ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence 468999999999999999999999999999999988541 01 12 23465 799999999
Q ss_pred EeeCCEEEEEEee
Q psy5819 65 RLENNEAEFELIK 77 (296)
Q Consensus 65 ~i~~~~v~i~L~K 77 (296)
++.+|.|.|+|.|
T Consensus 81 ~~~dGvL~I~lPK 93 (93)
T cd06471 81 KYENGVLKITLPK 93 (93)
T ss_pred EEECCEEEEEEcC
Confidence 9999999999976
No 64
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.67 E-value=0.00026 Score=55.11 Aligned_cols=61 Identities=18% Similarity=0.210 Sum_probs=53.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..+...|..+++.|+|..|+..|..++...|.. +.++.+.|.|+.++|++.+|+..+..+
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 102 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQV 102 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 4567778999999999999999999999998874 678999999999999999999887764
No 65
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.66 E-value=0.00016 Score=73.71 Aligned_cols=61 Identities=20% Similarity=0.209 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..+.+.|..+++.|+|..|+..|++||.++|++..+|.+||.||+.+|+|.+|+.|+..+
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999999999999999999999988653
No 66
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.59 E-value=0.00029 Score=60.04 Aligned_cols=65 Identities=17% Similarity=0.173 Sum_probs=44.1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
....+..+...|..++..|+|.+|+.+|.+++.+.|+ .+.++.|+|.+|..+|+|.+|+..+.+|
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 98 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA 98 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444566677777777777777777777777766554 2456777777777777777777766554
No 67
>KOG0624|consensus
Probab=97.58 E-value=9.2e-05 Score=69.75 Aligned_cols=63 Identities=22% Similarity=0.252 Sum_probs=58.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...+...+.|+++|..|+|..|+..|-.||+.+|++..+++.||.+|+.+|.-..|+.|++++
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHH
Confidence 346788999999999999999999999999999999999999999999999999999999876
No 68
>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6
Probab=97.51 E-value=0.00075 Score=51.77 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=55.9
Q ss_pred cEEEeeC-CEEEEEEEeCCCCCCcceEEeeccEEEEee-------------------cceEEeecccCCcccCCceEEee
Q psy5819 8 SCWRQTP-SKVFITVPLYNVPTHKVDVFTSESYIKLHY-------------------GNYIFEKLLLRPIVEEASRIRLE 67 (296)
Q Consensus 8 y~W~QT~-~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~-------------------~~~~~~~~L~~~Id~e~S~~~i~ 67 (296)
+.-.++. +.+.|++.|||+++.+++|.+.++.|.|+. ..|.-.+.|...|+.+ .+++.
T Consensus 3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~ 80 (90)
T cd06470 3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE 80 (90)
T ss_pred eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence 4555664 899999999999999999999999999984 1233366799999986 78999
Q ss_pred CCEEEEEEee
Q psy5819 68 NNEAEFELIK 77 (296)
Q Consensus 68 ~~~v~i~L~K 77 (296)
+|.|.|+|.+
T Consensus 81 ~GvL~I~l~~ 90 (90)
T cd06470 81 NGLLTIDLER 90 (90)
T ss_pred CCEEEEEEEC
Confidence 9999999864
No 69
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.48 E-value=0.0003 Score=43.08 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL 268 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~ 268 (296)
|..+...|..++..|+|.+|+.+|.+||.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4678889999999999999999999999999974
No 70
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.47 E-value=0.00023 Score=43.90 Aligned_cols=34 Identities=26% Similarity=0.435 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL 268 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~ 268 (296)
|..+..+|..++..|+|..|+.+|++||+++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3567889999999999999999999999999863
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.46 E-value=0.00056 Score=48.79 Aligned_cols=58 Identities=29% Similarity=0.417 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+...|..++..|+|..|+..|.++++..|.+..++.++|.|+...+++..|+..+..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 60 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999988765
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=97.44 E-value=0.00052 Score=69.28 Aligned_cols=64 Identities=17% Similarity=0.125 Sum_probs=58.8
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..++..+...|..++..|+|.+|+..|.+||+++|+++.+|+++|.+++.+|++.+|+..+.+|
T Consensus 335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A 398 (553)
T PRK12370 335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINEC 398 (553)
T ss_pred CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4457778889999999999999999999999999999999999999999999999999998876
No 73
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.00063 Score=57.54 Aligned_cols=64 Identities=17% Similarity=0.167 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...+..+...|..++..|+|.+|+..|.+|+.+.++ .+.+|.|.|.+|..+|++.+|+..|.+|
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A 98 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA 98 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 334677788899999999999999999999988665 3468999999999999999999988876
No 74
>KOG4626|consensus
Probab=97.40 E-value=0.00026 Score=71.11 Aligned_cols=63 Identities=16% Similarity=0.157 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
-+....+.|--+-++|++.+||.+|..||++.|..+.+|+|++..|-.+|+...|+.++++|.
T Consensus 387 ~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 387 FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 455666777777788888888888888888888888888888888888888888888888763
No 75
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=97.39 E-value=0.00099 Score=58.97 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=58.5
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+..+..+...|..++..|+|..|+..|.+++..+|.++ .+++++|.||+.+|++..|+..+..+
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRF 96 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455688999999999999999999999999999999875 57899999999999999999988764
No 76
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.39 E-value=0.00099 Score=51.73 Aligned_cols=61 Identities=16% Similarity=0.107 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..+...|..++..|+|..|+..|.+++...|++ +.+++++|.++++.|+|..|+..+..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 65 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV 65 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3567889999999999999999999999999876 578999999999999999999988764
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.38 E-value=0.00096 Score=56.88 Aligned_cols=64 Identities=14% Similarity=0.056 Sum_probs=55.8
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...+..+...|..++..|++..|+..|.+++...|.+..++.|.+.++...|++.+|+..+.++
T Consensus 62 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 125 (234)
T TIGR02521 62 PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQA 125 (234)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4456777888999999999999999999999999999999999999999999999999888765
No 78
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.38 E-value=0.00082 Score=59.04 Aligned_cols=64 Identities=14% Similarity=0.117 Sum_probs=52.9
Q ss_pred CCChHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQM-FRDGN--YLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~-fk~g~--y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..++..+...|..+ +..|+ +.+|+..|.++++.+|+++.+++++|.+++.+|+|.+|+..+.++
T Consensus 104 P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 104 GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34577778888875 67777 588999999999999999999999999999999999999888765
No 79
>KOG0553|consensus
Probab=97.36 E-value=0.0004 Score=64.25 Aligned_cols=70 Identities=19% Similarity=0.262 Sum_probs=64.1
Q ss_pred CCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 227 DLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 227 d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.+.-...+|..+-+|+-.|.+.|.|..||.....||.+||....+|...+.+|+.+|+|.+|+.-|.+|+
T Consensus 107 AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaL 176 (304)
T KOG0553|consen 107 AIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL 176 (304)
T ss_pred HHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhh
Confidence 3444566789999999999999999999999999999999999999999999999999999999988774
No 80
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.36 E-value=0.00035 Score=52.27 Aligned_cols=47 Identities=23% Similarity=0.321 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 248 DGNYLGAVSAYSHGLQLCPN--LACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 248 ~g~y~~Ai~~Yt~AI~~~p~--~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+|+|..|+..|.+++..+|. +..++++.|.||+++|+|.+|+..+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 68999999999999999995 577888899999999999999998854
No 81
>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.
Probab=97.35 E-value=0.00095 Score=50.92 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=58.0
Q ss_pred EeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ceE---E--eecccCCcccCCceEEe-eCCEEEEEEe
Q psy5819 11 RQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NYI---F--EKLLLRPIVEEASRIRL-ENNEAEFELI 76 (296)
Q Consensus 11 ~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~~---~--~~~L~~~Id~e~S~~~i-~~~~v~i~L~ 76 (296)
..+++.+.|.+.+||+.+.+++|.+.++.|.|+.. .|. | .+.|...||++.-++++ .+|.|.|+|.
T Consensus 6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P 85 (86)
T cd06497 6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP 85 (86)
T ss_pred EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence 56889999999999999999999999999999862 121 3 66799999999999999 7999999987
Q ss_pred e
Q psy5819 77 K 77 (296)
Q Consensus 77 K 77 (296)
|
T Consensus 86 K 86 (86)
T cd06497 86 K 86 (86)
T ss_pred C
Confidence 6
No 82
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=97.35 E-value=0.00074 Score=59.30 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=58.0
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH-HHcCC--HHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAH-LALNN--LHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~-lkl~~--~~~Ai~D~~~A 295 (296)
+..++..+...|..+...|+|..|+.+|.+|++++|+++.++.+.|.|+ +..|+ +.+|+.-+++|
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a 136 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKA 136 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 4556888999999999999999999999999999999999999999985 78788 58888877765
No 83
>KOG4234|consensus
Probab=97.33 E-value=0.00048 Score=60.73 Aligned_cols=64 Identities=16% Similarity=0.260 Sum_probs=58.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..+.-|-++|-.+++.+.+..||...++||+++|.+-.++..||-+|-++..|..|+.|+.+.
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKI 194 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4446678899999999999999999999999999999999999999999999999999999764
No 84
>KOG0624|consensus
Probab=97.33 E-value=0.00063 Score=64.28 Aligned_cols=59 Identities=22% Similarity=0.215 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+..+...++..|||..||...+..|++.|+++++|--||-||...|++..||+|...|
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~a 215 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQA 215 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 46677888899999999999999999999999999999999999999999999998765
No 85
>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.
Probab=97.33 E-value=0.00089 Score=50.59 Aligned_cols=67 Identities=13% Similarity=0.154 Sum_probs=57.6
Q ss_pred EeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec----------ceEEeecccCCcccCCceEEe-eCCEEEEEEee
Q psy5819 11 RQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG----------NYIFEKLLLRPIVEEASRIRL-ENNEAEFELIK 77 (296)
Q Consensus 11 ~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~----------~~~~~~~L~~~Id~e~S~~~i-~~~~v~i~L~K 77 (296)
..+.+.+.|.+.|||+++.+++|.+.++.|.|+.. .|.=.+.|..+||++..+..+ .++.|.|++.+
T Consensus 4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~ 81 (81)
T cd06479 4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR 81 (81)
T ss_pred cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence 35788999999999999999999999999999862 223366799999999999998 89999999864
No 86
>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ
Probab=97.31 E-value=0.001 Score=50.59 Aligned_cols=67 Identities=7% Similarity=0.037 Sum_probs=57.5
Q ss_pred eeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------c-----eEEeecccCCcccCCceEEee-CCEEEEEEee
Q psy5819 12 QTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------N-----YIFEKLLLRPIVEEASRIRLE-NNEAEFELIK 77 (296)
Q Consensus 12 QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~-----~~~~~~L~~~Id~e~S~~~i~-~~~v~i~L~K 77 (296)
-+.+.+.|++.+||+.+.+++|.+.++.|.|+.. . |.=.+.|...||++.-++++. +|.|.|+|.|
T Consensus 4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk 83 (84)
T cd06498 4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR 83 (84)
T ss_pred eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence 4678899999999999999999999999999862 1 222667999999999999996 9999999987
Q ss_pred c
Q psy5819 78 S 78 (296)
Q Consensus 78 ~ 78 (296)
+
T Consensus 84 ~ 84 (84)
T cd06498 84 K 84 (84)
T ss_pred C
Confidence 4
No 87
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.30 E-value=0.0013 Score=55.60 Aligned_cols=61 Identities=16% Similarity=0.028 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH-------HcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHL-------ALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~l-------kl~~~~~Ai~D~~~A 295 (296)
+..+...|..++..|++.+|+.+|.+|+.++|.....+.|++.+|. .+|++..|+.++.+|
T Consensus 72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 5678899999999999999999999999999999998999999988 889999998888765
No 88
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.30 E-value=0.0015 Score=55.61 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=48.9
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC--PNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~--p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..+..+...|..++..|+|..|+..|.+++... +....++.++|.|++.+|++.+|+..+.++
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 161 (234)
T TIGR02521 97 NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA 161 (234)
T ss_pred CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345667777888888888888888888888753 445677888888888888888888877765
No 89
>PRK10743 heat shock protein IbpA; Provisional
Probab=97.21 E-value=0.0024 Score=53.01 Aligned_cols=72 Identities=11% Similarity=0.125 Sum_probs=60.3
Q ss_pred CCcEEEe-eCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ceE--------E--eecccCCcccCCceEEe
Q psy5819 6 KESCWRQ-TPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NYI--------F--EKLLLRPIVEEASRIRL 66 (296)
Q Consensus 6 ~~y~W~Q-T~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~~--------~--~~~L~~~Id~e~S~~~i 66 (296)
|.+...+ +++.+.|++.|||+.+.+++|.+.++.|.|+.. .|+ | .+.|...|+++ .+++
T Consensus 35 p~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~--~A~~ 112 (137)
T PRK10743 35 PPYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVR--GANL 112 (137)
T ss_pred CcEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccC--cCEE
Confidence 5577774 899999999999999999999999999988752 121 2 55699999998 3999
Q ss_pred eCCEEEEEEeecC
Q psy5819 67 ENNEAEFELIKSE 79 (296)
Q Consensus 67 ~~~~v~i~L~K~~ 79 (296)
.+|.|.|+|.|..
T Consensus 113 ~dGVL~I~lPK~~ 125 (137)
T PRK10743 113 VNGLLYIDLERVI 125 (137)
T ss_pred eCCEEEEEEeCCC
Confidence 9999999999963
No 90
>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol
Probab=97.20 E-value=0.0018 Score=49.04 Aligned_cols=67 Identities=9% Similarity=0.090 Sum_probs=56.8
Q ss_pred EeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ce-----EEeecccCCcccCCceEEe-eCCEEEEEEe
Q psy5819 11 RQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NY-----IFEKLLLRPIVEEASRIRL-ENNEAEFELI 76 (296)
Q Consensus 11 ~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~-----~~~~~L~~~Id~e~S~~~i-~~~~v~i~L~ 76 (296)
..+.+.+.|.+.|||+++.+++|.+.++.|.|+.. .| .=.+.|...||++.-+.++ .+|.|.|++.
T Consensus 3 ~~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~P 82 (83)
T cd06478 3 RLDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGP 82 (83)
T ss_pred eecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEec
Confidence 35788999999999999999999999999988762 12 2266799999999999999 5999999987
Q ss_pred e
Q psy5819 77 K 77 (296)
Q Consensus 77 K 77 (296)
|
T Consensus 83 K 83 (83)
T cd06478 83 R 83 (83)
T ss_pred C
Confidence 6
No 91
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.18 E-value=0.0012 Score=43.47 Aligned_cols=43 Identities=21% Similarity=0.050 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAA 277 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~ 277 (296)
|..+...|..+...|+++.|+..|.++|+.+|+++.++...|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3456778999999999999999999999999999999887764
No 92
>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat
Probab=97.15 E-value=0.0024 Score=48.73 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=57.9
Q ss_pred EEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-------------ceEEeecccCCcccCCceEEee-CCEEEEE
Q psy5819 9 CWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-------------NYIFEKLLLRPIVEEASRIRLE-NNEAEFE 74 (296)
Q Consensus 9 ~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-------------~~~~~~~L~~~Id~e~S~~~i~-~~~v~i~ 74 (296)
++..|++.+.|.+.|||+.+.+++|.+.++.|.|+.. .|.=.+.|...||++..+..+. +|.|.|+
T Consensus 4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~ 83 (86)
T cd06475 4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVE 83 (86)
T ss_pred eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEE
Confidence 5789999999999999999999999999999988752 1222667999999999999997 9999988
Q ss_pred E
Q psy5819 75 L 75 (296)
Q Consensus 75 L 75 (296)
|
T Consensus 84 l 84 (86)
T cd06475 84 A 84 (86)
T ss_pred e
Confidence 7
No 93
>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.
Probab=97.15 E-value=0.0016 Score=49.03 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=54.7
Q ss_pred CEEEEEEEeCCCCCCcceEEeeccEEEEeec-------------ceEEeecccCCcccCCceEEeeC-CEEEEEEee
Q psy5819 15 SKVFITVPLYNVPTHKVDVFTSESYIKLHYG-------------NYIFEKLLLRPIVEEASRIRLEN-NEAEFELIK 77 (296)
Q Consensus 15 ~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-------------~~~~~~~L~~~Id~e~S~~~i~~-~~v~i~L~K 77 (296)
+.+.|.+.|||+.+.+++|.+.++.|.|... .|.-.+.|...||++..++++.+ +.|.|++.|
T Consensus 7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk 83 (83)
T cd06526 7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK 83 (83)
T ss_pred eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence 5899999999999999999999999998762 23336779999999999999998 999999875
No 94
>KOG0543|consensus
Probab=97.14 E-value=0.0011 Score=63.47 Aligned_cols=59 Identities=24% Similarity=0.193 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
-+.+.+-.+.+.++|..|+...+++|.++|.|.-+++.|+.||+.+|+|+.|+.|+.+|
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999999999999999887
No 95
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=97.14 E-value=0.0018 Score=69.68 Aligned_cols=64 Identities=17% Similarity=0.204 Sum_probs=53.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+.++..+...|..+...|++.+|+..|.+|++++|.++.++.|+|.|+..+|++.+|+..+.+|
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4456777888888888888888888888888888888888888888888888888888888776
No 96
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.13 E-value=0.0016 Score=59.17 Aligned_cols=62 Identities=23% Similarity=0.272 Sum_probs=47.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..-+...|..+|++|+|..|+..+.++..++|.+..+|+-+++||.++|++..|-..+.+|
T Consensus 99 d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qA 160 (257)
T COG5010 99 DRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQA 160 (257)
T ss_pred cHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHH
Confidence 45566667777888888888888888888888888888888888888888887777777665
No 97
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.11 E-value=0.0017 Score=55.24 Aligned_cols=51 Identities=18% Similarity=0.109 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNL 285 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~ 285 (296)
+..+...|..+++.|+|..|+..|.++|.+.|.+..++.+++.+|..+|+.
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh
Confidence 467889999999999999999999999999999999999999999998873
No 98
>KOG4626|consensus
Probab=97.08 E-value=0.00065 Score=68.32 Aligned_cols=71 Identities=21% Similarity=0.249 Sum_probs=65.1
Q ss_pred cCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 226 ADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 226 ~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
+.+......+..+-+.||.+-..|+..+|+.+|++||.++|..+.+++|.|..|---|+..+||.-+..|+
T Consensus 413 ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 413 EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 34556677789999999999999999999999999999999999999999999999999999999888763
No 99
>KOG1310|consensus
Probab=97.05 E-value=0.00084 Score=66.36 Aligned_cols=65 Identities=28% Similarity=0.340 Sum_probs=60.0
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH---cCCHHHHHHHHHhcC
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA---LNNLHKAVDDASEVR 296 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk---l~~~~~Ai~D~~~A~ 296 (296)
....++++..||..|-.+....||..|+++|...|....+|.|||+++++ .|+...|+.||..|+
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Al 438 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVAL 438 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhc
Confidence 34578999999999999999999999999999999999999999999998 578899999999875
No 100
>PRK11597 heat shock chaperone IbpB; Provisional
Probab=96.98 E-value=0.0053 Score=51.32 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=58.5
Q ss_pred CCcEEEe-eCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ce--------EE--eecccCCcccCCceEEe
Q psy5819 6 KESCWRQ-TPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NY--------IF--EKLLLRPIVEEASRIRL 66 (296)
Q Consensus 6 ~~y~W~Q-T~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~--------~~--~~~L~~~Id~e~S~~~i 66 (296)
|.+.=.+ +++.+.|++.|||+...+++|.+.++.|+|+.. .| .| .+.|...||++ .+++
T Consensus 33 P~vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~ 110 (142)
T PRK11597 33 PPYNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATF 110 (142)
T ss_pred CcEEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEE
Confidence 5566676 467999999999999999999999999998752 12 12 45588899987 5999
Q ss_pred eCCEEEEEEeec
Q psy5819 67 ENNEAEFELIKS 78 (296)
Q Consensus 67 ~~~~v~i~L~K~ 78 (296)
.+|.|.|+|.|.
T Consensus 111 ~nGVL~I~lPK~ 122 (142)
T PRK11597 111 VNGLLHIDLIRN 122 (142)
T ss_pred cCCEEEEEEecc
Confidence 999999999986
No 101
>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.
Probab=96.96 E-value=0.004 Score=47.22 Aligned_cols=65 Identities=11% Similarity=0.135 Sum_probs=55.1
Q ss_pred eCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ce---EE--eecccCCcccCCceEEee-CCEEEEEEee
Q psy5819 13 TPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NY---IF--EKLLLRPIVEEASRIRLE-NNEAEFELIK 77 (296)
Q Consensus 13 T~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~---~~--~~~L~~~Id~e~S~~~i~-~~~v~i~L~K 77 (296)
.++...|++.|||+++.+++|.+.++.|.|+.. .| .| ...|...||++.-+.++. +|.|.|+|.|
T Consensus 5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr 83 (83)
T cd06476 5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR 83 (83)
T ss_pred cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence 467889999999999999999999999999752 12 12 566999999999999996 9999999865
No 102
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.90 E-value=0.0036 Score=64.27 Aligned_cols=62 Identities=19% Similarity=0.188 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+..+...|..++..|+|..|+..|.+++..+|.++.+++.+|.+|+.+|+|.+|+..+.++
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 82 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKA 82 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667778888888888888888888888888888888888888888888888888877654
No 103
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.90 E-value=0.0055 Score=53.81 Aligned_cols=61 Identities=15% Similarity=0.156 Sum_probs=51.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
.+..+...|..+|..|+|..|+..|+..+...|.. +.+.+..|.||++.|+|..|+..+..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~ 67 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYER 67 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 47789999999999999999999999999987753 47888999999999999999988764
No 104
>KOG1125|consensus
Probab=96.83 E-value=0.0011 Score=65.97 Aligned_cols=63 Identities=24% Similarity=0.239 Sum_probs=48.8
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+..-+...|-.+-....+.+||.+|++|+.+-|.+..+.+|.|.||+.+|-|.+|+..+-.|
T Consensus 462 nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 462 NDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 333334445666666667888888888888888888899999999999999999998877655
No 105
>PRK15331 chaperone protein SicA; Provisional
Probab=96.81 E-value=0.0026 Score=54.32 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~ 292 (296)
+..+...|-.+-..|+|..|+.+|..|.-++++++.-++.-|.||+.+|+...|..-+
T Consensus 71 ~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 71 PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 3444555555555555555555555555555555555555555555555555555443
No 106
>PF08190 PIH1: pre-RNA processing PIH1/Nop17
Probab=96.81 E-value=0.0053 Score=57.62 Aligned_cols=64 Identities=19% Similarity=0.357 Sum_probs=56.8
Q ss_pred eCCEEEEEEEeCCC-CCCcceEEeeccEEEEeecc--eEEeecccCCcccCCceEEeeC--CEEEEEEe
Q psy5819 13 TPSKVFITVPLYNV-PTHKVDVFTSESYIKLHYGN--YIFEKLLLRPIVEEASRIRLEN--NEAEFELI 76 (296)
Q Consensus 13 T~~~V~i~V~l~~~-~~~~~~V~~~~~~lkv~~~~--~~~~~~L~~~Id~e~S~~~i~~--~~v~i~L~ 76 (296)
..+.+.|+|.|||+ +..++++.++...|.|..+. |.|++.|..+|+.+.+.+++.. +.|.|+|.
T Consensus 259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtlp 327 (328)
T PF08190_consen 259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKPKYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTLP 327 (328)
T ss_pred CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCCceEEEccCCCcccCCCceEEEccCCCEEEEEEE
Confidence 47899999999988 67899999999999999876 9999999999999999988865 68888873
No 107
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.81 E-value=0.013 Score=48.88 Aligned_cols=63 Identities=19% Similarity=0.275 Sum_probs=53.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCC---------------HHHHHHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLALNN---------------LHKAVDDAS 293 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl~~---------------~~~Ai~D~~ 293 (296)
+-........|..+|+.|+|..|+..|.+-|+++|..+ -+|+-||+|++.+.. ...|+.|+.
T Consensus 44 ~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~ 123 (142)
T PF13512_consen 44 EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFE 123 (142)
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHH
Confidence 33567788899999999999999999999999999754 778889999999887 777777776
Q ss_pred h
Q psy5819 294 E 294 (296)
Q Consensus 294 ~ 294 (296)
.
T Consensus 124 ~ 124 (142)
T PF13512_consen 124 Q 124 (142)
T ss_pred H
Confidence 4
No 108
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.81 E-value=0.0073 Score=54.79 Aligned_cols=63 Identities=19% Similarity=0.104 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH---HHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACL---YSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~l---y~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..+..+...|..++..|+|..|+..|.+.+...|..+.+ .++.|.||+++++|..|+..+.+.
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 457778899999999999999999999999999987644 488999999999999999887653
No 109
>KOG1173|consensus
Probab=96.76 E-value=0.007 Score=60.31 Aligned_cols=60 Identities=23% Similarity=0.234 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
-+.+.|-.+-+.+.|.+||.+|.+||.++|.++..|.-.|.||..+|+++.||..+.+|+
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 367789999999999999999999999999999999999999999999999999998873
No 110
>PRK15331 chaperone protein SicA; Provisional
Probab=96.74 E-value=0.0071 Score=51.66 Aligned_cols=61 Identities=15% Similarity=-0.027 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
-+.+...|-.+|..|+|.+|...|.-..-++|.++..+...|+|+..+++|.+|+.-+..|
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999877654
No 111
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.72 E-value=0.0062 Score=62.87 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..+..+...|..++..|+|..|+..|.+++.++|.++.++.+++.+|..+|++.+|+..+.++
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345667777888888888888888888888888888888888888888888888888777654
No 112
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.67 E-value=0.003 Score=38.80 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 269 ACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 269 ~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+.+|+|+|.||+.+|+|.+|+.+|.+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~a 27 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 468999999999999999999999987
No 113
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.61 E-value=0.0062 Score=53.83 Aligned_cols=60 Identities=18% Similarity=0.240 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH---HHHHHHHHHHHc--------CCHHHHHHHHHhc
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC---LYSNRAAAHLAL--------NNLHKAVDDASEV 295 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~---ly~NRA~~~lkl--------~~~~~Ai~D~~~A 295 (296)
..+...|..++..|+|.+|+..|.++++..|+++. ++++++.|++.+ |++..|+..+..+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~ 141 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQEL 141 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999998775 689999999987 8899999888764
No 114
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=96.59 E-value=0.0098 Score=57.81 Aligned_cols=65 Identities=11% Similarity=0.192 Sum_probs=59.3
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 230 ~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
....++.-|..++.-+++.|+|+.|+....+|+.+.|.+...|+..|.||+++|+|+.|+.-++.
T Consensus 229 ~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 229 ENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 34455888999999999999999999999999999999999999999999999999999977653
No 115
>KOG4648|consensus
Probab=96.58 E-value=0.0018 Score=61.33 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=63.0
Q ss_pred CCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 228 ~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
+.....+|-.+.+++..||+.+.|..|-..++.||.++.....+|+.|+.+...||+..+|-.||..|+
T Consensus 124 ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL 192 (536)
T KOG4648|consen 124 IAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVL 192 (536)
T ss_pred hccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Confidence 344555678889999999999999999999999999999999999999999999999999999998763
No 116
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.58 E-value=0.0087 Score=62.17 Aligned_cols=65 Identities=12% Similarity=0.013 Sum_probs=56.4
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...++..+...|-.+-+.|+|++|+.+|.+++..+|+++.++.++|.++..+|+..+|...|.+|
T Consensus 150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45567888888999999999999999999999888888999999999999999999998888776
No 117
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=96.53 E-value=0.011 Score=61.16 Aligned_cols=62 Identities=8% Similarity=0.095 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
.++..+...|..++..|++.+|+..|.+++.++|.++.++.+++.++..+|++.+|+..+..
T Consensus 108 ~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 108 CQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 34667888899999999999999999999999999999999999999999999999887754
No 118
>KOG0547|consensus
Probab=96.51 E-value=0.0033 Score=61.76 Aligned_cols=60 Identities=20% Similarity=0.285 Sum_probs=57.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
|..+-+++-.|-..|+|..-+...|+||+++|+...+|+.||.+|-+||++.+|+.|.+-
T Consensus 149 piFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv 208 (606)
T KOG0547|consen 149 PIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV 208 (606)
T ss_pred chhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence 788999999999999999999999999999999999999999999999999999999763
No 119
>PRK12370 invasion protein regulator; Provisional
Probab=96.47 E-value=0.012 Score=59.43 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=50.7
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...++..+...|..++..|+|++|+..|.+|++++|.++.++.+++.+++.+|++.+|+.-+.++
T Consensus 368 ~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 368 SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 34456677788888888888888888888888888888777777777777788888887766543
No 120
>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.
Probab=96.44 E-value=0.013 Score=44.76 Aligned_cols=63 Identities=11% Similarity=0.098 Sum_probs=52.6
Q ss_pred CCEEEEEEEeCCCCCCcceEEeeccEEEEeec----------ceE-----E--eecccCCcccCCceEEe-eCCEEEEEE
Q psy5819 14 PSKVFITVPLYNVPTHKVDVFTSESYIKLHYG----------NYI-----F--EKLLLRPIVEEASRIRL-ENNEAEFEL 75 (296)
Q Consensus 14 ~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~----------~~~-----~--~~~L~~~Id~e~S~~~i-~~~~v~i~L 75 (296)
.+.+.|++.|||+.+.+++|.+..+.|.|+.. .|. | .+.|..+||++...+.+ .++.|.|++
T Consensus 6 ~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~ 85 (87)
T cd06481 6 KEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIRA 85 (87)
T ss_pred cceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEEc
Confidence 46789999999999999999999999988752 121 2 55699999999999999 789998876
Q ss_pred e
Q psy5819 76 I 76 (296)
Q Consensus 76 ~ 76 (296)
.
T Consensus 86 P 86 (87)
T cd06481 86 P 86 (87)
T ss_pred C
Confidence 3
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.38 E-value=0.012 Score=61.06 Aligned_cols=64 Identities=6% Similarity=-0.151 Sum_probs=59.8
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
......+.+.|+.+++.+.+++|+..+.+++..+|+++..++++|.|+.++|+|++|+.-+.++
T Consensus 117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4456788999999999999999999999999999999999999999999999999999998876
No 122
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.36 E-value=0.015 Score=59.67 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
++..+...|..++..|++..|+..|.++|+.+|.++.++.+.+.++.+.|++.+|+..+.+++
T Consensus 836 ~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 836 IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 456677788899999999999999999999999999999999999999999999999887653
No 123
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.34 E-value=0.019 Score=52.74 Aligned_cols=62 Identities=15% Similarity=0.049 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+..+.-.|..+|..|+|.+|+..|..++...|+ .+.++++.|.||..+|++.+|+..+..+
T Consensus 179 a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 179 QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3677888999999999999999999999988776 5789999999999999999999988654
No 124
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=96.32 E-value=0.018 Score=54.53 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+...|..++..|++..|+..|.++++.+|....+++++|.+|.+.|++.+|+..+.++
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34556666777777777777777777777777777777777777777777777666553
No 125
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=96.32 E-value=0.015 Score=62.82 Aligned_cols=61 Identities=16% Similarity=0.088 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..+...|..+.+.|++.+|+..|.+++.++|+++.+++|.|.++..+|++.+|+.-+.+|
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~A 669 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERA 669 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5667777888888888888888888888888888888888888888888888888777665
No 126
>KOG4340|consensus
Probab=96.31 E-value=0.0064 Score=56.72 Aligned_cols=64 Identities=28% Similarity=0.341 Sum_probs=58.0
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
.+..+.-+.+.|.-.|+.|+|.+|+..|+.|+....-++.+-+|.|+||++-|+|..|+...+.
T Consensus 140 ~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSE 203 (459)
T KOG4340|consen 140 SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISE 203 (459)
T ss_pred CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3455778899999999999999999999999999998999999999999999999999987664
No 127
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.30 E-value=0.014 Score=64.10 Aligned_cols=59 Identities=14% Similarity=0.083 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+...|+.+...|+|.+|+..|.+++.++|+++.+++++|.+|+.+|++.+|+..+.++
T Consensus 463 ~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 463 RLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999999999999988765
No 128
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.24 E-value=0.025 Score=52.00 Aligned_cols=60 Identities=8% Similarity=-0.069 Sum_probs=52.4
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 236 DWVKAKGDQM-FRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 236 ~~lk~~Gn~~-fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
......|-.+ ++.|+|..|+..|...|...|+. +.+++-.|.+|+..|+|.+|+..+..+
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v 206 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV 206 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456667766 67899999999999999999987 579999999999999999999988764
No 129
>PLN02789 farnesyltranstransferase
Probab=96.21 E-value=0.018 Score=54.47 Aligned_cols=50 Identities=8% Similarity=-0.108 Sum_probs=26.5
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL 282 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl 282 (296)
++...+..+|..+...|+|.+|+.+|+++|+.+|.+..+|++|+.+..++
T Consensus 140 kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 140 KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 34444455555555555555555555555555555555555555554444
No 130
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.20 E-value=0.026 Score=50.76 Aligned_cols=61 Identities=15% Similarity=0.038 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+....+.|..++..||+..|..-..+||+.+|++..+|.-||..|.++|+...|-+-+.+|
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA 95 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKA 95 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHH
Confidence 4556677888888888888888888888888888888888888888888877777777665
No 131
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=96.16 E-value=0.03 Score=52.34 Aligned_cols=54 Identities=17% Similarity=0.070 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 240 AKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 240 ~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
..|..+...|+|..|+..|.+++.++|.++.++.+.|.+|+..|++.+|+.-+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~ 172 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFME 172 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444445555555555555555555444444444444444444444444433
No 132
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.09 E-value=0.039 Score=45.46 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+......|..++..|+|..|+..|..++...|+. ..+.++.|.|++..|+|.+|+..+..
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~ 110 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ 110 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4455667777788888888888888888766543 35666777777777777777766543
No 133
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.07 E-value=0.019 Score=62.95 Aligned_cols=57 Identities=14% Similarity=0.092 Sum_probs=53.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...|..+++.|+|.+|+..|.+++.++|.++.++.++|.+|..+|++.+|+..+.+|
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 466889999999999999999999999999999999999999999999999998876
No 134
>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).
Probab=95.98 E-value=0.038 Score=41.89 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=52.4
Q ss_pred eeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ce---EE--eecccCCcccCCceEEe-eCCEEEEE
Q psy5819 12 QTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NY---IF--EKLLLRPIVEEASRIRL-ENNEAEFE 74 (296)
Q Consensus 12 QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~---~~--~~~L~~~Id~e~S~~~i-~~~~v~i~ 74 (296)
.+.+...|++.|||+++.+++|.+.+++|.|+.. .| .| .+.|...|+++.-+.++ .+|.|.|.
T Consensus 4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~ 80 (83)
T cd06477 4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE 80 (83)
T ss_pred cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence 3677899999999999999999999999999862 12 23 55699999999999998 68887775
No 135
>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.
Probab=95.96 E-value=0.031 Score=42.74 Aligned_cols=62 Identities=16% Similarity=0.170 Sum_probs=50.8
Q ss_pred eCCEEEEEEEeCCCCCCcceEEeeccEEEEeec-----------ce---EE--eecccCCcccCCceEEeeCC-EEEEE
Q psy5819 13 TPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----------NY---IF--EKLLLRPIVEEASRIRLENN-EAEFE 74 (296)
Q Consensus 13 T~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~-----------~~---~~--~~~L~~~Id~e~S~~~i~~~-~v~i~ 74 (296)
..+.+.|++.|||+++.+++|.+.+++|.|+.. .| .| .+.|...||++.-+.++.++ .|.|.
T Consensus 6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i~ 84 (87)
T cd06482 6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKIE 84 (87)
T ss_pred cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEEe
Confidence 357899999999999999999999999999862 12 12 55699999999999999987 66653
No 136
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=95.95 E-value=0.037 Score=55.72 Aligned_cols=62 Identities=16% Similarity=-0.029 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..+..+...|-.+...|++.+|...|.+||.++| ++..|..+|.++...|++.+|+..+.+|
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456677778888899999999999999999999 5889999999999999999999999887
No 137
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=95.95 E-value=0.026 Score=53.40 Aligned_cols=60 Identities=15% Similarity=-0.013 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----ACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~----~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+..+...|..++..|+|..|+..|..++...+.. ..++.+.|.+|...|++..|+.-+.+
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 132 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQ 132 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444555555555555555555555555432211 23445555555555555555554443
No 138
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.90 E-value=0.017 Score=35.19 Aligned_cols=32 Identities=22% Similarity=0.329 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN 267 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~ 267 (296)
..+...|..+...|++..|+..|.++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45677899999999999999999999999884
No 139
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=95.85 E-value=0.038 Score=50.29 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=60.8
Q ss_pred CCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 228 ~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
......++..+-..|-.|-+.|++..|-..|.+|+++.|..+..++|.+..|+-.|++..|..-...|
T Consensus 127 ~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a 194 (257)
T COG5010 127 ARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPA 194 (257)
T ss_pred hccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHH
Confidence 34456668889999999999999999999999999999999999999999999999999998765543
No 140
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.82 E-value=0.03 Score=40.06 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=40.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAA 277 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~ 277 (296)
+.++..+...|..++..|+|.+|+..|++++..+|+++.+..-++.
T Consensus 26 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 26 PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 3367889999999999999999999999999999999887776654
No 141
>KOG2003|consensus
Probab=95.75 E-value=0.0069 Score=59.18 Aligned_cols=62 Identities=24% Similarity=0.210 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
--+|..+-++||-.|.+|+|+.|.+.|..||+.+.....+++|-++.+-++|+..+|+.-+-
T Consensus 487 ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 487 RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFL 548 (840)
T ss_pred ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999986553
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.71 E-value=0.02 Score=40.16 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA 269 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~ 269 (296)
..++..+...|..++..|+|.+|+..|.+++..+|+++
T Consensus 28 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 28 PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 45788999999999999999999999999999999875
No 143
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.69 E-value=0.062 Score=44.04 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=59.9
Q ss_pred hHHhHHHHHHHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q psy5819 208 EEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK 287 (296)
Q Consensus 208 ~~w~~~~~~a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~ 287 (296)
..|........+... ...+...+..+...|+|..|+..+..+|..+|-+-.+|...-.||..+|++..
T Consensus 47 ~~W~~~~r~~l~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~ 114 (146)
T PF03704_consen 47 EEWVEPERERLRELY------------LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAE 114 (146)
T ss_dssp STTHHHHHHHHHHHH------------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHH
T ss_pred cHHHHHHHHHHHHHH------------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHH
Confidence 467766554444321 24566777788999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc
Q psy5819 288 AVDDASEV 295 (296)
Q Consensus 288 Ai~D~~~A 295 (296)
|+.-+.++
T Consensus 115 A~~~Y~~~ 122 (146)
T PF03704_consen 115 ALRVYERY 122 (146)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99888764
No 144
>PLN02789 farnesyltranstransferase
Probab=95.68 E-value=0.02 Score=54.17 Aligned_cols=66 Identities=8% Similarity=-0.083 Sum_probs=52.6
Q ss_pred cCCCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH--HHHHHHHHhc
Q psy5819 230 PEENNPDWVKAKGDQMFRDG-NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNL--HKAVDDASEV 295 (296)
Q Consensus 230 ~~~~~~~~lk~~Gn~~fk~g-~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~--~~Ai~D~~~A 295 (296)
.+......+..+|..+...| ++.+|+..++++|..+|++..++++|+.++.++|++ .+++.-+.+|
T Consensus 66 lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~ka 134 (320)
T PLN02789 66 LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKI 134 (320)
T ss_pred HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHH
Confidence 34455667778888888888 678999999999999999999999999998888874 5666666554
No 145
>KOG0376|consensus
Probab=95.58 E-value=0.0047 Score=60.45 Aligned_cols=63 Identities=22% Similarity=0.298 Sum_probs=57.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..+..+-+++..+++.++|..|+....+||+++|....+|+.||.++++++.|.+|+.|+..+
T Consensus 36 nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 36 NCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred cceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 345667788889999999999999999999999999999999999999999999999998754
No 146
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.54 E-value=0.13 Score=42.91 Aligned_cols=63 Identities=14% Similarity=0.140 Sum_probs=55.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
...+..+...|...++.|+|..|+..+......-|- -..+.++.+-+|++.++|..|+.-+.+
T Consensus 7 ~~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 7 DKSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 446889999999999999999999999999887774 458899999999999999999987653
No 147
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.53 E-value=0.018 Score=51.60 Aligned_cols=67 Identities=24% Similarity=0.213 Sum_probs=57.9
Q ss_pred CCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 228 ~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+...+..|+.+.-.|-=+...|+|+.|.+.|+..++++|.+--++.||+.+++--|+|.-|..|+.+
T Consensus 92 Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 92 LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 4445556788888888889999999999999999999999999999999999999999999988753
No 148
>KOG0551|consensus
Probab=95.52 E-value=0.025 Score=53.41 Aligned_cols=61 Identities=26% Similarity=0.286 Sum_probs=56.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
++.-+-+++...+--|||..||+..++|+.++|....+|..-|.|++.|..+..|+.-|..
T Consensus 118 navLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 118 NAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 4667889999999999999999999999999999999999999999999999999988864
No 149
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.50 E-value=0.051 Score=57.10 Aligned_cols=64 Identities=16% Similarity=0.022 Sum_probs=51.3
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+.++..+...|..+...|++..|+..|.+|+.++|++..+++.+|.+++.+|+|..|...++.+
T Consensus 390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3346677788888888888888888888888888888888888888888888888888777654
No 150
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.50 E-value=0.035 Score=50.61 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=41.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK 287 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~ 287 (296)
..++..+...|..+.+.|++..|+.+|.+||+++|++..+..+.+.+++.+|++.+
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~ 198 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE 198 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH
Confidence 35678889999999999999999999999999999766555555555555555554
No 151
>KOG1126|consensus
Probab=95.49 E-value=0.019 Score=58.08 Aligned_cols=86 Identities=16% Similarity=0.130 Sum_probs=63.4
Q ss_pred HHhHHHHHHHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-------------------
Q psy5819 209 EWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA------------------- 269 (296)
Q Consensus 209 ~w~~~~~~a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~------------------- 269 (296)
.|-.+..-+...+.-+. +.....+|+.|...||.+--+++++.||.+|.+||.++|.++
T Consensus 397 LWHLq~~v~Ls~Laq~L--i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a 474 (638)
T KOG1126|consen 397 LWHLQDEVALSYLAQDL--IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKA 474 (638)
T ss_pred HHHHHhhHHHHHHHHHH--HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhH
Confidence 46655443343332221 222445789999999999999999999999999999999532
Q ss_pred ---------------HHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 270 ---------------CLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 270 ---------------~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.+|+-.+.+|++.+++..|...+.+|+
T Consensus 475 ~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~ 516 (638)
T KOG1126|consen 475 MKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV 516 (638)
T ss_pred HHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhh
Confidence 677778888888888888888877764
No 152
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.45 E-value=0.033 Score=34.98 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
+...|+.+++.|+|+.|+.+|.++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567899999999999999999996644
No 153
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.44 E-value=0.098 Score=42.40 Aligned_cols=60 Identities=20% Similarity=0.113 Sum_probs=46.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
...+...|..+...|++++|+..+++++.-.|+ +..+....|.|...+|++.+|+.-+-.
T Consensus 38 ~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 38 RRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 456667788888888888888888888877676 777777788888888888888776543
No 154
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.39 E-value=0.033 Score=31.57 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN 267 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~ 267 (296)
.+...|..++..|+|..|+..|.++|+++|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4567888889999999999999999988774
No 155
>KOG1125|consensus
Probab=95.36 E-value=0.034 Score=55.60 Aligned_cols=65 Identities=22% Similarity=0.219 Sum_probs=60.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
..+|...-..|--|+-.|+|+.|+.||..||...|++..+|+..++..-.-.+..+||..|.+|+
T Consensus 427 ~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL 491 (579)
T KOG1125|consen 427 KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRAL 491 (579)
T ss_pred CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999999999999999999999874
No 156
>KOG2076|consensus
Probab=95.36 E-value=0.067 Score=55.96 Aligned_cols=61 Identities=21% Similarity=0.157 Sum_probs=55.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+...++.-|.-.-+.|++.+|+-||++||.++|.+-.++.+|+.-|.++|++..|+.-+.+
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 3467888898889999999999999999999999999999999999999999999876654
No 157
>KOG1126|consensus
Probab=95.33 E-value=0.049 Score=55.18 Aligned_cols=67 Identities=16% Similarity=0.147 Sum_probs=54.1
Q ss_pred CCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 228 ~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+..+..+...+-.-|..+++.|..+.|+..|.+|+.++|.++.+.++||..++.+++|.+|+.-..+
T Consensus 516 ~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 516 VEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred hcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 3344555666677788888888888888888888888888988999999999999999998876654
No 158
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.29 E-value=0.084 Score=55.52 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=46.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+..+...|..+...|++.+|+..|.++|.++|.++.++.+.+.+++..|++.+|+.-+.++
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~ 109 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQL 109 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34456777777777777877888888777777777777777777777777777777766654
No 159
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.25 E-value=0.034 Score=33.66 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 269 ACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 269 ~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+.+++++|.+|+.+|+|.+|+..+.+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~a 27 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 467899999999999999999999886
No 160
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.10 E-value=0.078 Score=53.38 Aligned_cols=58 Identities=21% Similarity=0.248 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.-.+..+-..|+|..|+...++||...|..+.+|.-+|-++-+.|++.+|....+.||
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar 255 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEAR 255 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4456667789999999999999999999999999999999999999999999998876
No 161
>KOG3785|consensus
Probab=95.06 E-value=0.046 Score=52.18 Aligned_cols=64 Identities=22% Similarity=0.154 Sum_probs=52.1
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
++.+...+. .|-.+|..|||++|++.|+-+..-+.-++.+..|.|-|++-||.|.+|-.-..+|
T Consensus 54 EEE~~~~lW-ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 54 EEEDSLQLW-IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred hhhHHHHHH-HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 333333333 4778899999999999999999877778899999999999999999997765544
No 162
>KOG2796|consensus
Probab=94.95 E-value=0.029 Score=51.64 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=56.1
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+-.-+++.+-.+..+.||..|...|++.+..+|.++.+-+|.|+|.+-+|+...|+.-.+.+
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~ 312 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAM 312 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888889999999999999999999999999999999999999999999887654
No 163
>PRK14574 hmsH outer membrane protein; Provisional
Probab=94.92 E-value=0.13 Score=54.59 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=57.9
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.......+...|..+...|+|..|+..|.++++.+|+++.++.-.+..|..++++.+|+..+.++
T Consensus 98 ~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 98 MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 34456667777888999999999999999999999999999999999999999999999988765
No 164
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.90 E-value=0.039 Score=50.29 Aligned_cols=62 Identities=19% Similarity=0.178 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
++..+..-|..++..|++..|+..|.++++.+|.++..+.+-|.++...|++.+|+.-..+|
T Consensus 213 ~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 213 DPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp SCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred HHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34556778999999999999999999999999999999999999999999999998755443
No 165
>KOG1128|consensus
Probab=94.90 E-value=0.049 Score=55.89 Aligned_cols=67 Identities=18% Similarity=0.118 Sum_probs=58.4
Q ss_pred CcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 229 RPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 229 ~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+.+.-....+...|..+.+.++++.|+.+|+.++.++|++...++|.|.+|+++|+-.+|-.-...|
T Consensus 513 ~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 513 EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 3445567788899999999999999999999999999999999999999999999988887655544
No 166
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=94.68 E-value=0.14 Score=50.50 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=56.9
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
...++-.+--.|.-++..+++.+|++.|.+++.++|..+.+..|.|.+++++|++.+||.-..
T Consensus 336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 336 QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHH
Confidence 445677777889999999999999999999999999999999999999999999999987654
No 167
>KOG1840|consensus
Probab=94.58 E-value=0.087 Score=52.83 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL--------CPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--------~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
+.-++.-|..+...++|.+|+..|.+|+.+ +|.-+..+.|.|..|++.|+|.+|...|..|.
T Consensus 241 a~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 241 ASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 455667899999999999999999999965 44567999999999999999999999998873
No 168
>KOG1155|consensus
Probab=94.44 E-value=0.13 Score=50.62 Aligned_cols=65 Identities=15% Similarity=0.165 Sum_probs=50.8
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------------------------------ChHHHHHHH
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----------------------------------LACLYSNRA 276 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----------------------------------~~~ly~NRA 276 (296)
+......+---|-++...+|-.+||.+|..||+++|. ++.++.-.+
T Consensus 360 Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG 439 (559)
T KOG1155|consen 360 NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALG 439 (559)
T ss_pred CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHH
Confidence 3444556666788888899999999999999998884 446666677
Q ss_pred HHHHHcCCHHHHHHHHHhc
Q psy5819 277 AAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 277 ~~~lkl~~~~~Ai~D~~~A 295 (296)
.||.++++..+||.-+..|
T Consensus 440 ~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 440 ECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred HHHHHhccHHHHHHHHHHH
Confidence 8999999999998877665
No 169
>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis [].
Probab=94.41 E-value=0.3 Score=42.14 Aligned_cols=68 Identities=19% Similarity=0.322 Sum_probs=53.6
Q ss_pred eCC-EEEEEEEeCCCCCCc-ceEEee--ccEEEEeecc-eEEeecccCCcccCCceEEeeCCEEEEEEeecCcc
Q psy5819 13 TPS-KVFITVPLYNVPTHK-VDVFTS--ESYIKLHYGN-YIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQA 81 (296)
Q Consensus 13 T~~-~V~i~V~l~~~~~~~-~~V~~~--~~~lkv~~~~-~~~~~~L~~~Id~e~S~~~i~~~~v~i~L~K~~~~ 81 (296)
+++ +++|...||||...+ ++|.+. ...|.+.... |+=.+.|..+ +++.-.+++.++.|+|.|.+.+..
T Consensus 99 ~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~~~~krv~L~~~-~~e~~~~t~nNgILEIri~~~~~~ 171 (177)
T PF05455_consen 99 RDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGEKYLKRVALPWP-DPEITSATFNNGILEIRIRRTEES 171 (177)
T ss_pred cCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCCceEeeEecCCC-ccceeeEEEeCceEEEEEeecCCC
Confidence 445 789999999998777 777776 5666776654 6568888888 467678999999999999998764
No 170
>PRK10941 hypothetical protein; Provisional
Probab=94.36 E-value=0.2 Score=46.20 Aligned_cols=58 Identities=19% Similarity=0.113 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
.+.+.-..+.+.++|..|+.+....+.++|+++.-+--||.+|.+||.+..|+.|.+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~ 240 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSY 240 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3445556778999999999999999999999999999999999999999999999864
No 171
>KOG2076|consensus
Probab=94.35 E-value=0.16 Score=53.21 Aligned_cols=59 Identities=12% Similarity=0.077 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
...+...||.+|..|++..|...+.++|+++|.++.+|+-.|.||-.+|+..+|+.-..
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~l 197 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWL 197 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999876443
No 172
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=94.29 E-value=0.071 Score=37.68 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=32.0
Q ss_pred CCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy5819 232 ENNPDWVKAKGDQMFRDG-NYLGAVSAYSHGLQLCP 266 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g-~y~~Ai~~Yt~AI~~~p 266 (296)
...+..+...|..++..| +|.+|+..|.+||+++|
T Consensus 34 p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 34 PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 445788999999999999 79999999999999998
No 173
>KOG2002|consensus
Probab=94.25 E-value=0.068 Score=56.41 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=57.2
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL-ACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 230 ~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~-~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
....+.-.|..++.-.|..|||.+|+.+|..||.++|.. +....-++.|+++||+...|+..+.+|
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra 225 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA 225 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence 345567789999999999999999999999999999963 456677899999999999999888766
No 174
>KOG0545|consensus
Probab=94.25 E-value=0.12 Score=47.06 Aligned_cols=58 Identities=24% Similarity=0.238 Sum_probs=52.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+.+-...++..|+|.++++..+..|+..|.+..+|+.||-+|...-|..+|-+|+..+
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 3455667789999999999999999999999999999999999999999999998765
No 175
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.11 E-value=0.22 Score=46.50 Aligned_cols=62 Identities=10% Similarity=-0.056 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA----CLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~----~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
++..+...|..++..|++++|+..|.+++...|..+ .+|.++|.+++.+|++.+|+..+..+
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 466778889999999999999999999999887432 45778999999999999999888764
No 176
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=94.02 E-value=0.25 Score=40.64 Aligned_cols=61 Identities=13% Similarity=0.017 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
+......|..++..|+|+.|+..+.. +.-.+..+.++.-+|.+|+..|++.+|+.-+.+|.
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 34555678999999999999999965 44455677888899999999999999999998874
No 177
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.95 E-value=0.16 Score=44.18 Aligned_cols=54 Identities=17% Similarity=0.121 Sum_probs=41.4
Q ss_pred CCCChHHHHHHHHHHHHcC----------CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819 231 EENNPDWVKAKGDQMFRDG----------NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g----------~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~ 284 (296)
+..+++.|..=|..++... -|.+||.+|.+||.++|+...++.|.+.||..++.
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 3445788888888775432 36889999999999999999999999999998765
No 178
>KOG4555|consensus
Probab=93.76 E-value=0.33 Score=40.37 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=56.8
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----ACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~----~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...+..+.+++..+--+|+-.+|+...++|+++.... ..+|..|+..|-.+|+-+.|-.|+..|
T Consensus 74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAA 141 (175)
T ss_pred ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence 3567889999999999999999999999999997643 378999999999999999999999765
No 179
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=93.75 E-value=0.14 Score=30.47 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN 267 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~ 267 (296)
.+...|..+++.|++..|+..|.+.|...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4667888888999999999999999988875
No 180
>KOG4151|consensus
Probab=93.74 E-value=0.032 Score=57.57 Aligned_cols=68 Identities=25% Similarity=0.408 Sum_probs=58.5
Q ss_pred CCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHH--cCCHHHHHHHHHhc
Q psy5819 228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----LACLYSNRAAAHLA--LNNLHKAVDDASEV 295 (296)
Q Consensus 228 ~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----~~~ly~NRA~~~lk--l~~~~~Ai~D~~~A 295 (296)
+......+..++..||.+|..++|.+|...|..++.+.|. .+.++.|++.||+. +|+|..++.+|+.|
T Consensus 46 i~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la 119 (748)
T KOG4151|consen 46 IEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELA 119 (748)
T ss_pred hHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhh
Confidence 3333445678899999999999999999999999999884 67999999999986 77899999999876
No 181
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.64 E-value=0.39 Score=43.85 Aligned_cols=63 Identities=14% Similarity=0.015 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
...+..|.++|...++.|+|..|+..|.......|- ...+....+.+|++-++|..|+...++
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~dr 96 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDR 96 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 345788999999999999999999999999987774 457888899999999999999887653
No 182
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.62 E-value=0.26 Score=52.34 Aligned_cols=62 Identities=8% Similarity=-0.127 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+.....+|-..+++|+|..|+..|.++++.+|.++....-.+.++..+|++.+|+..|.+|
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka 94 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERY 94 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHh
Confidence 46778889999999999999999999999999988533337777888888888888888776
No 183
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.59 E-value=0.32 Score=44.70 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=37.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
.+..+.=.|..+|.+|+|..|...|-.+++-.|+ -+..++..|.|...+|+-+.|..-+.+
T Consensus 177 ~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 177 TPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred cchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3444444566666666666666666666665553 346666666666666666666555443
No 184
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=93.54 E-value=0.62 Score=37.69 Aligned_cols=60 Identities=13% Similarity=-0.059 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..+.+.|..+-..|+..+|+..|.+||...... ..++.++|.++..+|++.+|+.-.+.+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~ 64 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEA 64 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457788999999999999999999999976543 579999999999999999999876653
No 185
>KOG1128|consensus
Probab=93.49 E-value=0.081 Score=54.35 Aligned_cols=56 Identities=14% Similarity=0.135 Sum_probs=50.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 240 AKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 240 ~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..|+-.+.+++|.+|..++..+++++|-....|++++.|.+++++++.|+.++..+
T Consensus 490 ~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 490 SLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 33444566799999999999999999999999999999999999999999999765
No 186
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=93.48 E-value=0.16 Score=47.37 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai 289 (296)
.++..+...+..++..|+|.+|...+.+|+..+|.++.++.|.+.|...+|+..++.
T Consensus 199 ~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 199 STPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 356777888888899999999999999999999999999999999999998884443
No 187
>KOG1174|consensus
Probab=93.44 E-value=0.19 Score=48.89 Aligned_cols=78 Identities=21% Similarity=0.166 Sum_probs=66.7
Q ss_pred HHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 217 ARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 217 a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
++.++.+....+..++.....|.-+|+.+...|+.++|+-+|..|+.+.|..-.+|--.--||+..|.+.+|..-++.
T Consensus 316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~ 393 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANW 393 (564)
T ss_pred HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHH
Confidence 355555555556666777788999999999999999999999999999999999999999999999999999876654
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=93.35 E-value=0.14 Score=47.19 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCC--C----ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRD-GNYLGAVSAYSHGLQLCP--N----LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~-g~y~~Ai~~Yt~AI~~~p--~----~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+..+...|..+... |++..|+.+|.+|+.+-. + -..++.+-|.++..+|+|.+|+..+.++
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 356677777777777 899999999999998732 1 2478889999999999999999988753
No 189
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.48 Score=44.07 Aligned_cols=65 Identities=17% Similarity=0.117 Sum_probs=50.1
Q ss_pred CcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-------------------------------------HH
Q psy5819 229 RPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA-------------------------------------CL 271 (296)
Q Consensus 229 ~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~-------------------------------------~l 271 (296)
..+..+++-+--.|-.++..|++..|..+|.+|+++.|+++ ..
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 34555677788889999999999999999999998887644 55
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q psy5819 272 YSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 272 y~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
.+-.|..++..|+|.+|+....
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq 251 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQ 251 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHH
Confidence 5556777777888888877654
No 190
>KOG1308|consensus
Probab=93.22 E-value=0.041 Score=52.05 Aligned_cols=69 Identities=14% Similarity=0.121 Sum_probs=62.2
Q ss_pred CCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 227 DLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 227 d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+..+...+..+..+|..+.+.+....||..|..||.++|+.+.-|--|..++-.||+|.+|.+|+..|
T Consensus 140 ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a 208 (377)
T KOG1308|consen 140 AIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALA 208 (377)
T ss_pred ccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHH
Confidence 344455677888899999999999999999999999999999999999999999999999999998765
No 191
>KOG4814|consensus
Probab=93.16 E-value=0.16 Score=51.65 Aligned_cols=60 Identities=18% Similarity=0.237 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN------LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..|.+.+..+|+..+|..|+..|...+..-|. ++.+..|.+.||++|.+.+.|++.+..|
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EA 420 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEA 420 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 35678999999999999999999999987664 5788999999999999999999887665
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.03 E-value=0.4 Score=41.97 Aligned_cols=52 Identities=17% Similarity=0.197 Sum_probs=42.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcC
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLALN 283 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl~ 283 (296)
...+..+...|..+|+.|+|..|+..|...|+..|..+ .+++.+|.|++.+.
T Consensus 39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 44567788999999999999999999999999999754 68889999998764
No 193
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.98 E-value=0.36 Score=39.34 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPN------------LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~------------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
....|...+..|-|.+|...|.+|+...-. ++-||.-.|.++..||+|.+|+.-+..|
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 346678888999999999999999987543 5689999999999999999999888765
No 194
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=92.96 E-value=0.46 Score=43.02 Aligned_cols=49 Identities=14% Similarity=0.116 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALN 283 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~ 283 (296)
.......|..+|+.|+|.+|+..|.+.|+..|++ +.+++.+|.|+..++
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 3445788999999999999999999999999875 478889999987765
No 195
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.68 E-value=0.22 Score=30.05 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 270 CLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 270 ~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+|.++|.+|..+|++.+|+..+.+|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a 27 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKA 27 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57899999999999999999998876
No 196
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.60 E-value=0.44 Score=43.02 Aligned_cols=62 Identities=18% Similarity=0.061 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
.....+..++--+.+.|+-+.|-..|.+||.++|++..+++|=+.=....|.|.+|..-+++
T Consensus 67 s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~ 128 (250)
T COG3063 67 SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFER 128 (250)
T ss_pred ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHH
Confidence 33445555566666666666666666666666666555555554444444444444444443
No 197
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=92.58 E-value=0.38 Score=51.35 Aligned_cols=59 Identities=5% Similarity=-0.070 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..|...|..|=+.|++..|+..|.++|+++|+++.+.+|-|..|... +..+|+.-+.+|
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKA 175 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999 999999888776
No 198
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.47 E-value=0.18 Score=28.30 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 270 CLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 270 ~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+|.++|.||..+|++..|+..+..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 57889999999999999999988765
No 199
>PRK11906 transcriptional regulator; Provisional
Probab=92.40 E-value=0.34 Score=47.75 Aligned_cols=73 Identities=12% Similarity=0.033 Sum_probs=63.3
Q ss_pred HHHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 216 EARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 216 ~a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.|++++..+ ..+|..+.-.|....-.|++..|+..+.+|+.++|+.+.+|+-+|..+...|+...|+....+|
T Consensus 326 ~A~rAveld-------~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 326 LLDYVSDIT-------TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHhcC-------CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555443 3457888889998888889999999999999999999999999999999999999999988875
No 200
>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21.6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.
Probab=92.07 E-value=0.85 Score=35.15 Aligned_cols=64 Identities=9% Similarity=0.032 Sum_probs=52.2
Q ss_pred eeCCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ce-----EEeecccCCcccCCceEEee-CCEEEEEE
Q psy5819 12 QTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NY-----IFEKLLLRPIVEEASRIRLE-NNEAEFEL 75 (296)
Q Consensus 12 QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~-----~~~~~L~~~Id~e~S~~~i~-~~~v~i~L 75 (296)
-+.+.-.|.+.+.|.++.+++|.+.++.|.|+.. .| .-...|...||++.-+..+. ++.|.|.+
T Consensus 12 ~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Iea 89 (91)
T cd06480 12 NSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIEA 89 (91)
T ss_pred CCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEEc
Confidence 3566778999999999999999999999999762 12 22566999999999999998 78887764
No 201
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=91.87 E-value=0.4 Score=33.55 Aligned_cols=46 Identities=17% Similarity=0.124 Sum_probs=38.5
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRA 276 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA 276 (296)
.+.++......|..+++.|+|.+|...+.+++..+|+++.++.-+|
T Consensus 21 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 21 NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 3446788889999999999999999999999999999876665554
No 202
>KOG1130|consensus
Probab=91.67 E-value=0.34 Score=47.30 Aligned_cols=58 Identities=19% Similarity=0.267 Sum_probs=50.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----hHHHHHHHHHHHHcCCHHHHHHH
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----ACLYSNRAAAHLALNNLHKAVDD 291 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~----~~ly~NRA~~~lkl~~~~~Ai~D 291 (296)
+--.|-..|..+|+.|+|...+..|..||....++ ..+|+..+.+|+-|++|.+|+..
T Consensus 16 SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~y 77 (639)
T KOG1130|consen 16 SCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKY 77 (639)
T ss_pred HHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhh
Confidence 35667889999999999999999999999987764 47899999999999999999863
No 203
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.58 E-value=0.53 Score=45.55 Aligned_cols=53 Identities=9% Similarity=0.017 Sum_probs=48.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 241 ~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
.+.-+...|+|..|+..|.++++.+|+++.++.-.+.+|+..|+|.+|+.-+.
T Consensus 159 ~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~ 211 (398)
T PRK10747 159 RVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILP 211 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 48888999999999999999999999999999999999999999999985443
No 204
>KOG2002|consensus
Probab=91.38 E-value=0.64 Score=49.40 Aligned_cols=67 Identities=15% Similarity=0.147 Sum_probs=57.8
Q ss_pred CcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 229 RPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 229 ~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.++..+|..+-..+|.+|-.|||..++..+-.||...-.. +..|++.|-||..+|+|++|...+-+|
T Consensus 264 ~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 264 KENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred hhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 4566789999999999999999999999999999876544 455999999999999999999888765
No 205
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.35 E-value=0.39 Score=43.25 Aligned_cols=68 Identities=18% Similarity=0.171 Sum_probs=60.0
Q ss_pred CCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 227 DLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 227 d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+++++++ +.-+.++|+-+=..|-+.-|-..|+++|.+.|..+..|+-.+.-++.-|+|+.|.+.++.+
T Consensus 58 ~l~~eeR-A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~ 125 (297)
T COG4785 58 ALTDEER-AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSV 125 (297)
T ss_pred cCChHHH-HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhH
Confidence 4444444 6788999999999999999999999999999999999999999999999999999887653
No 206
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=91.31 E-value=0.88 Score=43.99 Aligned_cols=64 Identities=19% Similarity=0.206 Sum_probs=55.5
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+.++..+...|.-+++.|+|..|...|.+++...|++.. |.-.|.++.++|+..+|..-+.++
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3456788889999999999999999999999999998765 446899999999999998877654
No 207
>KOG1155|consensus
Probab=91.17 E-value=1 Score=44.55 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+.++.-+-..|+.+-+.++.++||.||..||..+..+..+|...|..|-.++++.+|..-+.+
T Consensus 429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 345677889999999999999999999999999999999999999999999999999876654
No 208
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.98 E-value=0.61 Score=35.68 Aligned_cols=52 Identities=23% Similarity=0.317 Sum_probs=42.7
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 244 QMFRDGNYLGAVSAYSHGLQLCPN---------LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 244 ~~fk~g~y~~Ai~~Yt~AI~~~p~---------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...+.|||.+|+..+.+.+..... ...+..|.|.++..+|++.+|+..+..|
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 346899999998888888765432 2467889999999999999999988876
No 209
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.94 E-value=0.39 Score=29.96 Aligned_cols=25 Identities=12% Similarity=0.077 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 271 LYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 271 ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+|.|.|.+|..+|+|.+|+.-+.+|
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5789999999999999999998874
No 210
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=90.81 E-value=0.82 Score=44.30 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=53.4
Q ss_pred CCCCh--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNP--DWVKAKGDQMFRDGNYLGAVSAYS--HGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~--~~lk~~Gn~~fk~g~y~~Ai~~Yt--~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+.++ ..+-..|--+++.|+|..|...|. .++...|+... +...|.++.++|+..+|.+-+.++
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34456 778889999999999999999999 68888887665 558899999999999998877664
No 211
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=90.72 E-value=1.7 Score=30.02 Aligned_cols=41 Identities=15% Similarity=0.036 Sum_probs=31.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAA 278 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~ 278 (296)
+.-.+-.+++.|+|..|..+...+|+++|++..+..-+..+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 45567788999999999999999999999987666554443
No 212
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=90.70 E-value=1.8 Score=32.56 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHcCCHHHHHHHH
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLALNNLHKAVDDA 292 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl~~~~~Ai~D~ 292 (296)
-...++|-.+|.+.+..+|+..+.++|+..++.. .++.-.+.+|.-.|+|.++++-+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467899999999999999999999999887654 55556778889999999988654
No 213
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.66 E-value=1.2 Score=38.42 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
-..+.+.|+-+++.|++..|+.+|.++...+.. ...++++...+.+-+++|..+....++|
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 466889999999999999999999999987654 3466677777777788887777666654
No 214
>KOG1130|consensus
Probab=90.42 E-value=0.1 Score=50.70 Aligned_cols=61 Identities=16% Similarity=0.156 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN------LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...+-+.||.+|-.|+|++||..-..-|.+... .-.+|+|.+.||+-+|+|.-|++.+..+
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 345667899999999999999999998887654 2379999999999999999999988654
No 215
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.11 E-value=0.78 Score=28.54 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
+..+.+.|..++..|+|.+|+..|.+++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 345677888888889999999988888865
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=89.81 E-value=0.25 Score=35.78 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=24.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 268 LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 268 ~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+.+|.|.|.||..+|+|.+|+..+.+|
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678999999999999999999999876
No 217
>KOG3785|consensus
Probab=89.65 E-value=0.55 Score=45.09 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=44.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHH
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~A 288 (296)
-...+...|..-.|++||..|++.|.-+|+...+-.+.|+||++|.-|+-+
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvs 204 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVS 204 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhH
Confidence 345566677778899999999999999999999999999999999887654
No 218
>KOG1129|consensus
Probab=89.59 E-value=0.24 Score=47.00 Aligned_cols=63 Identities=17% Similarity=0.118 Sum_probs=54.2
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+.+.+-..|..+|-.++-+-|+.+|.+.|.+.-.++.+|+|.++|++--++|+-++.-+.+|
T Consensus 322 ~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 322 INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 344556667888899999999999999999999999999999999999999998888776655
No 219
>KOG2003|consensus
Probab=89.55 E-value=0.089 Score=51.68 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai 289 (296)
.+.+.|-.+.+.|.|..||+.|..+++.+|+.... +|...|++-.|+-++--
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~-~nl~i~~f~i~d~ekmk 329 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAA-LNLIICAFAIGDAEKMK 329 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHhCccHHhh-hhhhhhheecCcHHHHH
Confidence 34455555666666666666666666666654333 35666666666654433
No 220
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=88.45 E-value=2.3 Score=39.05 Aligned_cols=60 Identities=18% Similarity=0.239 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------hHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL-------ACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~-------~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
..-+...|.-+.+.|+|.+|+..|.+.+...-.+ ...|++..+|||.+|++..|-..++.
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4556677888899999999999999998754321 15678899999999999888665543
No 221
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.29 E-value=0.91 Score=28.24 Aligned_cols=27 Identities=26% Similarity=0.158 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 269 ACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 269 ~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+.++.|.|.+|..+|+|.+|+.-+.+|
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHH
Confidence 467899999999999999999888765
No 222
>KOG1840|consensus
Probab=88.09 E-value=1.6 Score=43.99 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=54.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC--------PNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~--------p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..-+..+.+.|..+...+.|.+|+..|.+++++- +.-+..|.|.|.+|+++|+|.+|..-+.+|
T Consensus 322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 3347788899999999999999999999998752 245689999999999999999998877665
No 223
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=88.08 E-value=1.6 Score=42.27 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=50.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
...+.-++..|+|..|+..+...++..|+++.++.-.+.+|+..|+|..|+.....
T Consensus 157 ~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~ 212 (409)
T TIGR00540 157 IARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDN 212 (409)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34578889999999999999999999999999999999999999999998876554
No 224
>KOG4642|consensus
Probab=88.04 E-value=1 Score=41.03 Aligned_cols=65 Identities=12% Similarity=0.045 Sum_probs=59.8
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..-+..+.+++..+|+..+|..+.....+||.++|+....++-.++|.+....|..||....+|
T Consensus 40 nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 40 NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 44557889999999999999999999999999999999999999999999999999999887765
No 225
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.85 E-value=0.64 Score=27.48 Aligned_cols=25 Identities=12% Similarity=0.114 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 271 LYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 271 ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
++++.|.||.++|++.+|+..+..+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6789999999999999999988754
No 226
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=87.76 E-value=2 Score=35.86 Aligned_cols=50 Identities=20% Similarity=0.134 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~ 284 (296)
+..+..++..++..|+|+-|+...+.++..+|++..+..-+|.++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999988875
No 227
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.54 E-value=2.6 Score=38.75 Aligned_cols=60 Identities=15% Similarity=0.162 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+..+.+.+-.+++.|+|..|...|..-|+.-|+. +.+++=.+.|++.+|+|..|..-+..
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~ 203 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFAR 203 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHH
Confidence 4558999999999999999999999999999974 47888899999999999999877654
No 228
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.52 E-value=1 Score=41.54 Aligned_cols=57 Identities=19% Similarity=0.180 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+...=+.+...+++..|..+-.+.|.++|.++.-.--||.+|.++|.+.-|+.|.+.
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~ 240 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSY 240 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHH
Confidence 334445667899999999999999999999999999999999999999999999875
No 229
>KOG3247|consensus
Probab=87.31 E-value=0.37 Score=46.69 Aligned_cols=83 Identities=10% Similarity=0.099 Sum_probs=68.6
Q ss_pred ccCCcEEEeeCCEEEEEEEeCCCCCCcceEEeeccEEEEeecceEEeecccCCcccCCce---EEeeCCEEEEEEeecCc
Q psy5819 4 IVKESCWRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIFEKLLLRPIVEEASR---IRLENNEAEFELIKSEQ 80 (296)
Q Consensus 4 ~~~~y~W~QT~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~~~~~~~~L~~~Id~e~S~---~~i~~~~v~i~L~K~~~ 80 (296)
+.|.+.-+|.++.++|.|+.|-.+...+.+....+.+.++++||.+.+.+.+.+-.+... +-..++.+.|.+.|..+
T Consensus 2 ltp~f~itqdee~~~L~I~~p~~~a~~le~~a~~nm~~f~~~pyflrl~~p~~~~~d~~~n~s~d~kd~~~~vK~~K~~~ 81 (466)
T KOG3247|consen 2 LTPQFAITQDEEFCTLIIPRPLNQASKLEIDAAANMASFSAGPYFLRLAGPGMVEDDARPNASYDAKDGYAHVKVPKFHP 81 (466)
T ss_pred CCceeeeeecCceEEEEeeccccchhccchhhHhhhhhhccchhHHhhcCcchhhhhccccCccccccceeEEeecCCCc
Confidence 468899999999999999999667788888888888888889999888888877665332 45567899999999998
Q ss_pred cc-cccc
Q psy5819 81 AM-WDEK 86 (296)
Q Consensus 81 ~~-W~~L 86 (296)
++ .+-|
T Consensus 82 ~e~F~~L 88 (466)
T KOG3247|consen 82 GEHFSDL 88 (466)
T ss_pred cccccch
Confidence 86 7766
No 230
>KOG2376|consensus
Probab=87.30 E-value=2.5 Score=42.91 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-------------------------------CChHHHHHHHHHHHHcCC
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP-------------------------------NLACLYSNRAAAHLALNN 284 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p-------------------------------~~~~ly~NRA~~~lkl~~ 284 (296)
..+--+|..+|+.|+|++|+..|...++-+. +...+++|+|-.++..|+
T Consensus 111 ~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gk 190 (652)
T KOG2376|consen 111 KLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGK 190 (652)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhccc
Confidence 3566789999999999999999988864322 145899999999999999
Q ss_pred HHHHHHHHHhc
Q psy5819 285 LHKAVDDASEV 295 (296)
Q Consensus 285 ~~~Ai~D~~~A 295 (296)
|..|++-...|
T Consensus 191 y~qA~elL~kA 201 (652)
T KOG2376|consen 191 YNQAIELLEKA 201 (652)
T ss_pred HHHHHHHHHHH
Confidence 99999887766
No 231
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=87.01 E-value=1.8 Score=43.00 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----LACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+..+-++..+|.-+...|+.+.|+..|++|+..... ...++..++-||+-+.+|.+|...+..
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 456889999999999999999999999999954433 358899999999999999999987754
No 232
>KOG3060|consensus
Probab=86.95 E-value=2.6 Score=38.76 Aligned_cols=53 Identities=11% Similarity=0.114 Sum_probs=46.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~ 284 (296)
..+++.+.+.++-|+..|+|..|+-||.+.|-++|.++.++...|-.++-+|-
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 34678899999999999999999999999999999999998888888886554
No 233
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=86.56 E-value=1.9 Score=40.97 Aligned_cols=62 Identities=15% Similarity=0.077 Sum_probs=49.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA-CLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~-~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
.+....-.-.|+.+...|+|++|+..|..+++.||... ....-...||-++|+..+.+.=..
T Consensus 211 ~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 211 KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 33344456679999999999999999999999999864 555567889999999988765433
No 234
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=86.31 E-value=2.5 Score=26.70 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCC
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYS--HGLQLCPNL 268 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt--~AI~~~p~~ 268 (296)
+.+..-|-.++..|+|++|+..|+ -+..+++.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 457778999999999999999955 777777643
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.82 E-value=4.7 Score=32.22 Aligned_cols=61 Identities=21% Similarity=0.193 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN-LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~-~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...+...+..++..+++..|+..|..++...+. ....+.+.+.++...+.+..|+..+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 167 AEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 455555666667777888888888888887777 5777778888888888777777766543
No 236
>KOG1156|consensus
Probab=85.69 E-value=1.4 Score=45.11 Aligned_cols=58 Identities=10% Similarity=0.142 Sum_probs=48.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~ 290 (296)
.+.-=+---|--+-..++|.+||.||..|+.++|+|..++...|.-..+|++|.....
T Consensus 73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 3344455667777778999999999999999999999999999999999999887654
No 237
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=85.68 E-value=2.4 Score=31.57 Aligned_cols=31 Identities=19% Similarity=0.406 Sum_probs=26.5
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
.+..+..+|..+=+.|+|.+|+.+|.+||..
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999853
No 238
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.24 E-value=5 Score=32.02 Aligned_cols=51 Identities=25% Similarity=0.333 Sum_probs=33.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCC---CChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 244 QMFRDGNYLGAVSAYSHGLQLCP---NLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 244 ~~fk~g~y~~Ai~~Yt~AI~~~p---~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
.++..|++..|+..|.+++..+| .....+.+++..+...+++..|+..+..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 56667777777777777766555 3555666666666666677777666554
No 239
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.05 E-value=1.4 Score=32.78 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
.+..+-.++-.+=+.|+|.+||.+|+.||++
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 4567778888999999999999999999864
No 240
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=84.81 E-value=1.1 Score=44.17 Aligned_cols=33 Identities=9% Similarity=-0.091 Sum_probs=30.7
Q ss_pred hCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 264 LCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 264 ~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.+|+++.+++|++.+|+++|+|.+|+..|++|+
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rAL 102 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETAL 102 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 588999999999999999999999999998873
No 241
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=84.51 E-value=5 Score=39.12 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
|+...-.+..++..++..+|+....++|..+|.++.++.--|..+++.++|..|+.-+.+|
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~a 260 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKA 260 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4455556788888899999999999999999999999999999999999999999888765
No 242
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=84.29 E-value=3 Score=42.08 Aligned_cols=51 Identities=12% Similarity=0.116 Sum_probs=44.3
Q ss_pred ChHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819 234 NPDWVKAKGDQMFRDGN---YLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~---y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~ 284 (296)
.+-.+.-+|..++..++ +..|+.+|.+||+++|+++.+|.-+|.||.....
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~ 391 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHS 391 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHh
Confidence 56778889999987766 8899999999999999999999999999976543
No 243
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=84.22 E-value=1.6 Score=40.57 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=44.6
Q ss_pred HHHHHHHH--HHcC--CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 238 VKAKGDQM--FRDG--NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 238 lk~~Gn~~--fk~g--~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+...+..+ +..| .|..|.-.|.......+..+.+++..|.|++.+|+|.+|...+..|
T Consensus 166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~a 227 (290)
T PF04733_consen 166 LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEA 227 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44444444 3344 5999999999988777788899999999999999999999988766
No 244
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.17 E-value=1.6 Score=30.13 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 271 LYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 271 ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+++..|.+|+++|+|..|...|+.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~l 27 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDAL 27 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5677999999999999999998764
No 245
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=82.81 E-value=2.9 Score=29.97 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
+..+..+|-.+=+.|+|..|+.+|..||..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456677888888899999999999999854
No 246
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=82.66 E-value=2.7 Score=26.95 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
-+-..|...+-.++|.+|+..|.+||++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455688888899999999999999875
No 247
>KOG1127|consensus
Probab=82.62 E-value=1.1 Score=47.90 Aligned_cols=59 Identities=17% Similarity=0.141 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+-.+|--+...|++.+||..+..|++.+|.+..++.-.+.+|...|.|..|+.-+++|
T Consensus 564 nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 564 NWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred hhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 34448888888999999999999999999999999999999999999999999888776
No 248
>KOG3081|consensus
Probab=81.98 E-value=5.3 Score=37.02 Aligned_cols=60 Identities=15% Similarity=0.080 Sum_probs=53.6
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~ 292 (296)
..+.-+..+++.++..|+|.+|......||.-+++++..+.|.-.|-+.+|...++..+.
T Consensus 205 ~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~ 264 (299)
T KOG3081|consen 205 PTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN 264 (299)
T ss_pred CChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence 346677888899999999999999999999999999999999999999999987776654
No 249
>KOG3060|consensus
Probab=81.96 E-value=6.8 Score=36.10 Aligned_cols=46 Identities=20% Similarity=0.106 Sum_probs=24.0
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 248 DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 248 ~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
+|.-..||...+.-++.-+.++.++--.|..|+.+|+|.+|+--+.
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 3333344444444444444455666666666666666666655443
No 250
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=81.71 E-value=4.6 Score=32.33 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 235 PDWVKAKGDQMFRDGN-----------YLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~-----------y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
+.-+..+|.-+++... ...|+.+|+++..+.|..+.++++.|.-+-...-|.+|+.-|.+++
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3567778888876442 4789999999999999999999988888777788999999888763
No 251
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=80.76 E-value=3.4 Score=40.60 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=41.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-------------Ch-----HHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 241 KGDQMFRDGNYLGAVSAYSHGLQLCPN-------------LA-----CLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 241 ~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~-------------~~-----~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
.|..+|++|+|..|+..|..||+++.+ +. -+--..+.|||++++++-|+...-+
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hr 253 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHR 253 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhh
Confidence 467789999999999999999988653 11 2334578899999999998876543
No 252
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=80.58 E-value=5.4 Score=29.23 Aligned_cols=30 Identities=27% Similarity=0.275 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
+..+..+|...=..|+|.+|+.+|..||..
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788888888999999999999999854
No 253
>KOG0546|consensus
Probab=80.52 E-value=0.56 Score=44.70 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=28.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
....+..++.|+..|+.++|..|+..|.++++.
T Consensus 219 ~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~ 251 (372)
T KOG0546|consen 219 LEREEKKKNIGNKEFKKQRYREALAKYRKALRY 251 (372)
T ss_pred hhhhhhhhccchhhhhhccHhHHHHHHHHHhhh
Confidence 334577899999999999999999999999854
No 254
>KOG1174|consensus
Probab=80.18 E-value=3.5 Score=40.44 Aligned_cols=61 Identities=10% Similarity=0.049 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..+.-.|..+|-.++|..|+..-.++|..+|.+..+|.-.+...+.+|++.+|+-.+..|
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 4455667888899999999999999999999999999999999999999999999888765
No 255
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=80.08 E-value=7 Score=38.84 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=58.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..+...+..+-..|..|.++.|....+..|..-|+|+.+..-++..++..+++.+|++-+.+|
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~ka 366 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKA 366 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 446678889999999999999999999999999999999999999999999999999988775
No 256
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.33 E-value=2.9 Score=31.12 Aligned_cols=31 Identities=26% Similarity=0.207 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
.+..+-.+|-.+=+.|+|.+|+.+|..||+.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3566777888888999999999999999864
No 257
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=79.16 E-value=6.9 Score=28.50 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
+..+..+|..+=..|+|.+|+.+|..|++.
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 556777888888899999999999999853
No 258
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=78.65 E-value=6.9 Score=28.45 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
+..+..+|..+=..|+|.+|+.+|..|++.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 455677888888889999999999999853
No 259
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.61 E-value=3.4 Score=30.71 Aligned_cols=31 Identities=19% Similarity=0.389 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC 265 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~ 265 (296)
+..|..+|...=..|+|++|+..|..||++.
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHHH
Confidence 5667788888888999999999999999753
No 260
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=78.38 E-value=3.7 Score=26.50 Aligned_cols=26 Identities=15% Similarity=-0.027 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 270 CLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 270 ~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.++..+|.+|..+|++.+|+.-+.++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRA 27 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57889999999999999999988765
No 261
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=77.83 E-value=3.3 Score=30.58 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
.+..+..+|...=..|+|.+|+.+|..||+.
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3567888898999999999999999999864
No 262
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.35 E-value=4.6 Score=23.17 Aligned_cols=23 Identities=22% Similarity=-0.081 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q psy5819 270 CLYSNRAAAHLALNNLHKAVDDA 292 (296)
Q Consensus 270 ~ly~NRA~~~lkl~~~~~Ai~D~ 292 (296)
.+++++|.+++.+|++.+|..-+
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Confidence 45677777777777777776654
No 263
>KOG4162|consensus
Probab=77.16 E-value=9.3 Score=40.02 Aligned_cols=37 Identities=19% Similarity=0.127 Sum_probs=25.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA 269 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~ 269 (296)
..+..+..+|..+...|.+.+|..+|..|+.++|+..
T Consensus 682 l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 682 LSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 3456667777777777777777777777776666443
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=76.44 E-value=11 Score=35.25 Aligned_cols=56 Identities=16% Similarity=0.085 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~ 292 (296)
.....|..++..|++..|...|..++..+|.+..+..-.|.||+..|+.+.|..-+
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL 191 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAIL 191 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHH
Confidence 45677889999999999999999999999999999999999999999997775443
No 265
>KOG4162|consensus
Probab=76.36 E-value=6 Score=41.37 Aligned_cols=68 Identities=15% Similarity=0.062 Sum_probs=57.3
Q ss_pred CCcCCCChHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 228 LRPEENNPDWVKAKGDQMFRDGNYLGAVS--AYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 228 ~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~--~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+.-++..+..+-..|..+...|+-.-|.. ....|++++|.++.+|++.+-++.++|+...|..-+..|
T Consensus 711 l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 711 LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 33444456778889999999998877777 999999999999999999999999999999888766554
No 266
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=76.09 E-value=10 Score=33.61 Aligned_cols=58 Identities=19% Similarity=0.224 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQ-LCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~-~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
......|+.+...|+|.+|...|.+++. +-..++.+++.+|.+.+.++++..|..-.+
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3455679999999999999999999984 455788999999999999999998865443
No 267
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=75.91 E-value=14 Score=35.25 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..+=+.+..+....+.+.|+....+|+..+|++..+-.-++..++..|+|.+|++....+
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 6677788889999999999999999999999999988888999999999999999877654
No 268
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.55 E-value=19 Score=33.49 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=64.6
Q ss_pred hhHHhHHHHHHHHHcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHH
Q psy5819 207 EEEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLH 286 (296)
Q Consensus 207 ~~~w~~~~~~a~~~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~ 286 (296)
-..|+..+..+.+.. ....+...+..+...|++..++....+-|.++|-+-.+|.-.-.+|++.|+..
T Consensus 137 f~~WV~~~R~~l~e~------------~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~ 204 (280)
T COG3629 137 FDEWVLEQRRALEEL------------FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQS 204 (280)
T ss_pred HHHHHHHHHHHHHHH------------HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCch
Confidence 467888877655532 13567778888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q psy5819 287 KAVDDASE 294 (296)
Q Consensus 287 ~Ai~D~~~ 294 (296)
.||.-|.+
T Consensus 205 ~ai~~y~~ 212 (280)
T COG3629 205 AAIRAYRQ 212 (280)
T ss_pred HHHHHHHH
Confidence 99998875
No 269
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.39 E-value=9.8 Score=34.36 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CC---ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLC---PN---LACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~---p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
.-..+-|.++|..|+|..|+..|..+...- .. ...+......|+..+|+....+.-|-+
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 334578999999999999999999996542 22 347778889999999999998876643
No 270
>KOG1129|consensus
Probab=75.21 E-value=4.2 Score=38.83 Aligned_cols=64 Identities=13% Similarity=-0.028 Sum_probs=50.9
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...+..+.+.|-.+--.||+..|-.+|.-||.-+++...+|+|.|..-..-|+..+|-.-++.|
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 3456667777777777788888888888888888888899999999888899988887766554
No 271
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.91 E-value=11 Score=28.70 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=22.9
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN 267 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~ 267 (296)
++.+.......|..++..|+|.+|+..+-..+..++.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 4445566666777777777777777777777766654
No 272
>KOG2376|consensus
Probab=73.21 E-value=8.2 Score=39.36 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=33.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
+..+..++.+--.+.+.+.|+.|+ +.|+.++. +..+++-+|.|+++++..++|+.+.+
T Consensus 43 pdd~~a~~cKvValIq~~ky~~AL----k~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDAL----KLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHH----HHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh
Confidence 334455555555556666666665 23333332 22344677777777777777777654
No 273
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=72.76 E-value=10 Score=38.29 Aligned_cols=74 Identities=18% Similarity=0.113 Sum_probs=58.8
Q ss_pred HcCCcccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 220 ACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 220 ~~~~~~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
++.+.+..+.-.+..++-+.-+|.-+-..|++.+|...+..|-.+|..+--+-+.-+-.+++.|+..+|..-|.
T Consensus 213 Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 213 ALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 33333334444566788999999999999999999999999999999886665556666778999999988765
No 274
>KOG1173|consensus
Probab=72.47 E-value=9.7 Score=38.64 Aligned_cols=62 Identities=15% Similarity=0.037 Sum_probs=47.9
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.|-.+..-|.=++--|+|..|-++|++|-.++|....+|.--|..|-..|..+.|+..+..|
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tA 372 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTA 372 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHH
Confidence 35557777877777888888888888888888888888887788888888888887776654
No 275
>KOG1127|consensus
Probab=72.08 E-value=12 Score=40.44 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=34.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC-HHHHHHHHH
Q psy5819 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN-LHKAVDDAS 293 (296)
Q Consensus 241 ~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~-~~~Ai~D~~ 293 (296)
.+.+.+++++|..||+...++++.+|+|..++.-.+.++..++. ..+|-+.+-
T Consensus 8 ~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv 61 (1238)
T KOG1127|consen 8 SAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYV 61 (1238)
T ss_pred HHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHH
Confidence 45566666777777777777777777766666666666666666 665555443
No 276
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=71.15 E-value=13 Score=38.49 Aligned_cols=60 Identities=10% Similarity=-0.175 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+..+....+.+...|++..|...+.+.+.+.|.+...|...+.+|.+.|++.+|..-...
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 455677777888899999999999999999999999999999999999999999876553
No 277
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=70.25 E-value=18 Score=35.11 Aligned_cols=62 Identities=23% Similarity=0.208 Sum_probs=52.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
..+|.-+...|.-+++++.|.+|-.++..||..-| ++.-|.-+|-+|.++|+...|-.-...
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 34567889999999999999999999999999988 456777799999999999988654443
No 278
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=70.08 E-value=7.9 Score=28.63 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
+..+..+|...=..|+|.+|+.+|..||+.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 456677788888899999999999999864
No 279
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=69.37 E-value=26 Score=28.74 Aligned_cols=56 Identities=14% Similarity=0.125 Sum_probs=42.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh-------CCC----ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 240 AKGDQMFRDGNYLGAVSAYSHGLQL-------CPN----LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 240 ~~Gn~~fk~g~y~~Ai~~Yt~AI~~-------~p~----~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.....+-..|+|.+++..-..||.+ +.+ -..+.+|||.++-.+|...+|+..+..|
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3445566899999998888888854 333 2467789999999999999999988764
No 280
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=68.95 E-value=29 Score=31.81 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=52.7
Q ss_pred hhHHhHHHHHHHHHcCCc----------ccCCCcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHH
Q psy5819 207 EEEWLQKQAEARQACGFI----------AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYS 273 (296)
Q Consensus 207 ~~~w~~~~~~a~~~~~~~----------~~d~~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~ 273 (296)
..+|+..+....+.-++. ..... .+-....+...|-.+++.|+|..|+....+-|++.|.++ -+++
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF-SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 567887765544443322 11111 122367788999999999999999999999999988643 6777
Q ss_pred HHHHHHHH
Q psy5819 274 NRAAAHLA 281 (296)
Q Consensus 274 NRA~~~lk 281 (296)
-++++++.
T Consensus 113 lkgLs~~~ 120 (254)
T COG4105 113 LKGLSYFF 120 (254)
T ss_pred HHHHHHhc
Confidence 79999775
No 281
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=68.68 E-value=9.6 Score=41.06 Aligned_cols=43 Identities=16% Similarity=0.009 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 253 GAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 253 ~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.++..|...|---+.+..+++.+|.||-++|++.+|+..+.++
T Consensus 100 ~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~ 142 (906)
T PRK14720 100 AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERL 142 (906)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 5555555555555555589999999999999999999988875
No 282
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=68.30 E-value=39 Score=27.16 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------------------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----------------------LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----------------------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+...|......|+...++..|.+++.+-.. ...++...+.+++..|++..|+..|..+
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 88 (146)
T PF03704_consen 9 LVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRA 88 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 445577778889999999999999977432 1256666777888999999999998865
No 283
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=68.20 E-value=38 Score=33.82 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~ 292 (296)
.....+-|.=+|..|+|..++.+-.-..+++| .+.+|--.+.|.+..++|.+|....
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l 518 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL 518 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45566677778999999999998777889999 8899999999999999999997644
No 284
>KOG0495|consensus
Probab=67.12 E-value=11 Score=39.11 Aligned_cols=63 Identities=22% Similarity=0.087 Sum_probs=43.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
....+.-.|.-+-+.++...|-..|+.+++.+|....++.-.|-.--+.|+...|-..+++||
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 344455666666677777777777777777777777777776666666677777766666654
No 285
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=67.08 E-value=15 Score=20.88 Aligned_cols=28 Identities=25% Similarity=0.319 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy5819 249 GNYLGAVSAYSHGLQLCPNLACLYSNRA 276 (296)
Q Consensus 249 g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA 276 (296)
|++..|-..|.++|...|.++.++..-+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 5788899999999999998888876543
No 286
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=66.78 E-value=7.1 Score=25.00 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 270 CLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 270 ~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.+|...|-+.+-.++|..|+.|+.+|
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~a 27 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKA 27 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 46777888889999999999999876
No 287
>KOG0546|consensus
Probab=66.51 E-value=2.3 Score=40.69 Aligned_cols=53 Identities=17% Similarity=0.041 Sum_probs=28.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 243 DQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 243 n~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...++.++|..|+..-..+|+.+++...+|+.|+.+|+.+.++..|+.|...|
T Consensus 283 ~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a 335 (372)
T KOG0546|consen 283 AVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKA 335 (372)
T ss_pred HhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHh
Confidence 33345555555555555555555555555555555555555555555555443
No 288
>PRK04841 transcriptional regulator MalT; Provisional
Probab=66.27 E-value=17 Score=38.56 Aligned_cols=58 Identities=12% Similarity=0.111 Sum_probs=38.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPN------LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+...|..++..|+|..|...|.+++..... ...++.+.|.+++..|++..|...+.++
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344566666777777777777777754331 1245567777777788887777766554
No 289
>KOG4340|consensus
Probab=66.00 E-value=12 Score=35.47 Aligned_cols=62 Identities=18% Similarity=0.063 Sum_probs=48.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
.++-..|--.|-.+|...+|..|..||.+.-.+-|......+-.|...++-+.|..|+.-..
T Consensus 41 p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~ 102 (459)
T KOG4340|consen 41 PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAF 102 (459)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 33345667778888888888888888888888888888777778888888888888876543
No 290
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=65.97 E-value=29 Score=33.77 Aligned_cols=57 Identities=11% Similarity=0.078 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~ 292 (296)
.....++.-+..+|+|..|.+.-.++++..|.++....-+..||+.+|+|...+.-.
T Consensus 154 ~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l 210 (400)
T COG3071 154 AVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAIL 210 (400)
T ss_pred HHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHH
Confidence 456778888999999999999999999999999999999999999999999876543
No 291
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=65.17 E-value=20 Score=35.61 Aligned_cols=60 Identities=12% Similarity=-0.135 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh-HHHHHHHHHHHHcCCH-------HHHHHHHHh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA-CLYSNRAAAHLALNNL-------HKAVDDASE 294 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~-~ly~NRA~~~lkl~~~-------~~Ai~D~~~ 294 (296)
..-+.+.|-.++-.++|.+|..+|...++.+.+.. .+++-.|.|++.+++. .+|..-+.+
T Consensus 305 ~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~ 372 (468)
T PF10300_consen 305 HLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRK 372 (468)
T ss_pred HHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHH
Confidence 45577889999999999999999999999988754 5566688899999998 666554443
No 292
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.38 E-value=36 Score=28.99 Aligned_cols=52 Identities=15% Similarity=0.070 Sum_probs=45.7
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNL 285 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~ 285 (296)
.++...-.|.-+...|+|.+|+..+.....-.|..+.+-.-.|.|+..+|++
T Consensus 43 ~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 43 FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 3555667799999999999999999999998999998888899999999984
No 293
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=63.87 E-value=11 Score=23.11 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.2
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHH
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAV 255 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai 255 (296)
++.++..+...|..+...|++.+|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4556889999999999999999986
No 294
>KOG4563|consensus
Probab=63.76 E-value=15 Score=35.51 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=42.8
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------ChHHHHHHHHHHHHcCCHHHHH
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN--------LACLYSNRAAAHLALNNLHKAV 289 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~--------~~~ly~NRA~~~lkl~~~~~Ai 289 (296)
....+...|+.++.+++|..|.++|+.|..++.. +...++--+.++|.++.+..++
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~V 103 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQV 103 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999988663 2234444566777777666554
No 295
>KOG0985|consensus
Probab=63.03 E-value=14 Score=40.24 Aligned_cols=54 Identities=26% Similarity=0.350 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+...+..-|+.+|..|.|+.|--+|+. .+-|...|.....||+|+.|+..+.+|
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 456788999999999999999999974 456778899999999999999887776
No 296
>PRK04841 transcriptional regulator MalT; Provisional
Probab=60.77 E-value=27 Score=37.01 Aligned_cols=58 Identities=9% Similarity=-0.149 Sum_probs=48.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCP------NLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p------~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+...|..+...|+|..|+..|.+++.... ..+.++..+|.+|..+|++.+|+....+|
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45678888999999999999999997632 23467888999999999999999887765
No 297
>PRK10941 hypothetical protein; Provisional
Probab=60.38 E-value=31 Score=31.84 Aligned_cols=47 Identities=19% Similarity=0.091 Sum_probs=40.6
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAA 278 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~ 278 (296)
..+|..++++|--+++.|.+..|+..++.-|+.+|+++.+-.-+...
T Consensus 212 P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 212 PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 45688999999999999999999999999999999988766555443
No 298
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=59.69 E-value=13 Score=36.64 Aligned_cols=54 Identities=17% Similarity=0.006 Sum_probs=47.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 241 ~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
....|++.++-..|++.--+.|.++|....-++-+|+|+-.|.+|.+|..-+.-
T Consensus 234 lv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami 287 (569)
T PF15015_consen 234 LVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI 287 (569)
T ss_pred HHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678899999999999999999999999999999999999999999776543
No 299
>KOG1310|consensus
Probab=59.39 E-value=35 Score=34.74 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=52.7
Q ss_pred CChHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 233 NNPDWVKAKGDQMFR---DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk---~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
....-|-+++..+++ .|+-..|+.....||+++|....+++-.|-|...|+.|.+|+.+...
T Consensus 406 ~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~a 470 (758)
T KOG1310|consen 406 DAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWA 470 (758)
T ss_pred chhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Confidence 345566777777766 56888999999999999999999999999999999999999977654
No 300
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=58.85 E-value=17 Score=32.34 Aligned_cols=45 Identities=20% Similarity=0.016 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 251 YLGAVSAYSHGLQLCPN------LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 251 y~~Ai~~Yt~AI~~~p~------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+..|+..|.+|+..... ...+.+-.|..+.++|++.+|+.-++++
T Consensus 141 l~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~v 191 (214)
T PF09986_consen 141 LRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRV 191 (214)
T ss_pred HHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45666777777654431 2355555677777777777777666543
No 301
>KOG0686|consensus
Probab=58.39 E-value=26 Score=34.41 Aligned_cols=60 Identities=17% Similarity=0.253 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
..+.+-|+.|...|++..|+.+|.++-.++.+ -...+.|--.+-+-+|||.......++|
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 45778899999999999999999998777664 3467778888888899998887766655
No 302
>KOG0276|consensus
Probab=56.63 E-value=24 Score=36.42 Aligned_cols=62 Identities=18% Similarity=0.089 Sum_probs=47.5
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CChH------------HHHHHH-HHHHHcCCHHHHH
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP--------NLAC------------LYSNRA-AAHLALNNLHKAV 289 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p--------~~~~------------ly~NRA-~~~lkl~~~~~Ai 289 (296)
+..+...++..|+.+++.|++..|-+|+.+|-.+.. .++. -.+|.| .||+.+|++.+|+
T Consensus 662 e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHH
Confidence 445678999999999999999999999999976543 2222 223333 6999999999998
Q ss_pred HHH
Q psy5819 290 DDA 292 (296)
Q Consensus 290 ~D~ 292 (296)
+-.
T Consensus 742 ~lL 744 (794)
T KOG0276|consen 742 ELL 744 (794)
T ss_pred HHH
Confidence 654
No 303
>KOG1156|consensus
Probab=54.59 E-value=40 Score=34.87 Aligned_cols=58 Identities=19% Similarity=0.130 Sum_probs=51.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
...+..+...|+|+.|....+.||.-.|....+|.-.|-.+.+.|++..|..-+..|+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~ 432 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQ 432 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 3556677889999999999999999999999999999999999999999987776653
No 304
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=53.97 E-value=21 Score=28.93 Aligned_cols=30 Identities=27% Similarity=0.650 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPN 267 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~ 267 (296)
-...|..+...|++.+|+.+|..||..+|.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 356899999999999999999999999985
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=53.62 E-value=61 Score=28.74 Aligned_cols=59 Identities=14% Similarity=0.108 Sum_probs=46.8
Q ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHH
Q psy5819 230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----LACLYSNRAAAHLALNNLHKAV 289 (296)
Q Consensus 230 ~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----~~~ly~NRA~~~lkl~~~~~Ai 289 (296)
+....|+-.. .--.+|-..|-..|+..|.++|++... ++..+.-.|..|.++|++..|-
T Consensus 136 ~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 136 PELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3444554444 444567789999999999999998764 5899999999999999999873
No 306
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=52.45 E-value=63 Score=32.62 Aligned_cols=51 Identities=18% Similarity=0.088 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHHHHHHHHcCCHHHHHH
Q psy5819 240 AKGDQMFRDGNYLGAVSAYSHGLQLCPN--LACLYSNRAAAHLALNNLHKAVD 290 (296)
Q Consensus 240 ~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~--~~~ly~NRA~~~lkl~~~~~Ai~ 290 (296)
..|..+-+.|...+||..|...++..|. +..++.|...|++.++.|.++-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 4577778999999999999999998875 56899999999999999988743
No 307
>KOG3824|consensus
Probab=51.81 E-value=15 Score=35.01 Aligned_cols=46 Identities=22% Similarity=0.252 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAA 277 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~ 277 (296)
...|+.|.+-|.-.-...+.-+|=.+|.+||.++|.+..++.||+-
T Consensus 147 P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 147 PTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4456667766665555566777777888888888877777777763
No 308
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.68 E-value=52 Score=31.09 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=45.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 241 ~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
.+..+..+|.|.+|+..-.++|.++|-+...+.-.-+.+..+|+-..|+..+.
T Consensus 285 va~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khye 337 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYE 337 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHH
Confidence 45566789999999999999999999998888888889999999777766554
No 309
>PLN03077 Protein ECB2; Provisional
Probab=50.79 E-value=64 Score=34.34 Aligned_cols=58 Identities=14% Similarity=-0.064 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~ 292 (296)
+..+...-+.+...|+...|.....+.++++|+++..|...+..|...|+|.+|..-.
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 3444444455556677777777777888999999999999999999999999987643
No 310
>KOG0710|consensus
Probab=49.66 E-value=32 Score=30.15 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=58.9
Q ss_pred cEE--EeeCCEEEEEEEeCCCCCCcceEEeecc-EEEEeec----------------------ceEEeecccCCcccCCc
Q psy5819 8 SCW--RQTPSKVFITVPLYNVPTHKVDVFTSES-YIKLHYG----------------------NYIFEKLLLRPIVEEAS 62 (296)
Q Consensus 8 y~W--~QT~~~V~i~V~l~~~~~~~~~V~~~~~-~lkv~~~----------------------~~~~~~~L~~~Id~e~S 62 (296)
..| ..+.+...+.+.+||....+++|.+.+. .+.|+.. .|.-...|...|+.+.-
T Consensus 85 ~~~~v~e~~~~~~~~~~~Pgl~ke~iKv~~~~~~~l~isGe~~~e~e~~~~~~~~~~~E~~~g~F~r~~~lPenv~~d~i 164 (196)
T KOG0710|consen 85 VPWDVKESPDAHEFKVDLPGLKKEDIKVEVEDEKVLTISGERKKEEEESGSGKKWKRVERKLGKFKRRFELPENVDVDEI 164 (196)
T ss_pred CCcccccCCCceEEEeeCCCCCchhceEEeccCcEEEEecccccccccccCCccceeehhcccceEeeecCCccccHHHH
Confidence 456 5889999999999999999999999887 4777641 11224568999999999
Q ss_pred eEEeeCCEEEEEEeecCc
Q psy5819 63 RIRLENNEAEFELIKSEQ 80 (296)
Q Consensus 63 ~~~i~~~~v~i~L~K~~~ 80 (296)
++.+.++.+.|++.|..+
T Consensus 165 kA~~~nGVL~VvvpK~~~ 182 (196)
T KOG0710|consen 165 KAEMENGVLTVVVPKLEP 182 (196)
T ss_pred HHHhhCCeEEEEEecccc
Confidence 999999999999999765
No 311
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=49.20 E-value=21 Score=32.69 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQ 263 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~ 263 (296)
.-+.+.|..+|+.++|..|+.-|.-|+.
T Consensus 247 ~LLW~~~~~~~~~k~y~~A~~w~~~al~ 274 (278)
T PF08631_consen 247 TLLWNKGKKHYKAKNYDEAIEWYELALH 274 (278)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 4578999999999999999999998873
No 312
>KOG4507|consensus
Probab=49.16 E-value=34 Score=35.25 Aligned_cols=58 Identities=17% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+-+.++.+.+.|-...|-....++|.++...+..++-.+.+|+.|.+..+||+.+..|
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a 702 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQA 702 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHH
Confidence 3455555666665566666666666666666777777788888888888888777655
No 313
>KOG3591|consensus
Probab=49.07 E-value=1e+02 Score=26.49 Aligned_cols=67 Identities=15% Similarity=0.201 Sum_probs=52.0
Q ss_pred CCEEEEEEEeCCCCCCcceEEeeccEEEEeec--------ceE---E--eecccCCcccCCceEEeeC-CEEEEEEeecC
Q psy5819 14 PSKVFITVPLYNVPTHKVDVFTSESYIKLHYG--------NYI---F--EKLLLRPIVEEASRIRLEN-NEAEFELIKSE 79 (296)
Q Consensus 14 ~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~--------~~~---~--~~~L~~~Id~e~S~~~i~~-~~v~i~L~K~~ 79 (296)
.+...|.+.+...++..+.|.+.++.|.|... .|+ | ..-|..-||++.-+.++.. |.|.|.-.|..
T Consensus 71 ~~~F~V~lDV~~F~PeEl~Vk~~~~~l~V~gkHeer~d~~G~v~R~F~R~y~LP~~vdp~~V~S~LS~dGvLtI~ap~~~ 150 (173)
T KOG3591|consen 71 KDKFEVNLDVHQFKPEELKVKTDDNTLEVEGKHEEKEDEHGYVSRSFVRKYLLPEDVDPTSVTSTLSSDGVLTIEAPKPP 150 (173)
T ss_pred CCcEEEEEEcccCcccceEEEeCCCEEEEEeeeccccCCCCeEEEEEEEEecCCCCCChhheEEeeCCCceEEEEccCCC
Confidence 45567888888999999999999999999863 222 2 5569999999998888876 67777766664
Q ss_pred c
Q psy5819 80 Q 80 (296)
Q Consensus 80 ~ 80 (296)
.
T Consensus 151 ~ 151 (173)
T KOG3591|consen 151 P 151 (173)
T ss_pred C
Confidence 3
No 314
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=47.56 E-value=47 Score=26.55 Aligned_cols=42 Identities=17% Similarity=0.138 Sum_probs=32.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCh---HHHHHHHHHHHHc
Q psy5819 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLA---CLYSNRAAAHLAL 282 (296)
Q Consensus 241 ~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~---~ly~NRA~~~lkl 282 (296)
++..+|..|||-.|+......|...+++. .++.-.+..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~l 46 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKL 46 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHH
Confidence 56789999999999999999998877654 4555555555543
No 315
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=47.19 E-value=98 Score=24.11 Aligned_cols=50 Identities=18% Similarity=0.163 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~ 284 (296)
+.....+|-..+-.|||..|.....++-+..+.....|.--|.+-..+||
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~gd 108 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQGD 108 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCC
Confidence 55667889999999999999999999988877666777766666666654
No 316
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.57 E-value=1.1e+02 Score=29.51 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCC-hHHHHHHHHHHHH--cCCHHHHHHHHHh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL-CPNL-ACLYSNRAAAHLA--LNNLHKAVDDASE 294 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~-~p~~-~~ly~NRA~~~lk--l~~~~~Ai~D~~~ 294 (296)
+.....++..+|+.++|..|...+...+.. .+.. ..+|.+.+.+|.. .-+|.+|.+..+.
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~ 194 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEK 194 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 345677888999999999999999999885 4333 3567777666664 7778888776654
No 317
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=46.51 E-value=65 Score=31.94 Aligned_cols=63 Identities=24% Similarity=0.231 Sum_probs=42.8
Q ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------CChHH-------------HHHHHHHHHHcCCHHHHH
Q psy5819 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP--------NLACL-------------YSNRAAAHLALNNLHKAV 289 (296)
Q Consensus 231 ~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p--------~~~~l-------------y~NRA~~~lkl~~~~~Ai 289 (296)
...++..++..|+.++.+|++.-|..||.++=..+. .+... ++-+-.|++.+|++.+|+
T Consensus 343 ~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv 422 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECV 422 (443)
T ss_dssp CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHH
T ss_pred hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHH
Confidence 344678999999999999999999999988632211 12111 122336788889998888
Q ss_pred HHHH
Q psy5819 290 DDAS 293 (296)
Q Consensus 290 ~D~~ 293 (296)
.-..
T Consensus 423 ~lL~ 426 (443)
T PF04053_consen 423 DLLI 426 (443)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 318
>PLN03218 maturation of RBCL 1; Provisional
Probab=46.31 E-value=88 Score=34.63 Aligned_cols=57 Identities=12% Similarity=-0.044 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHGLQLC-PNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~-p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
.+....+.+.+.|++..|+..|....+.+ +.+...|+....+|.+.|++.+|+.-+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444555666666666666666666554 2345566666666666666666665443
No 319
>KOG2471|consensus
Probab=46.17 E-value=11 Score=37.98 Aligned_cols=67 Identities=13% Similarity=0.071 Sum_probs=52.5
Q ss_pred CcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh-h--------CC---------CChHHHHHHHHHHHHcCCHHHHHH
Q psy5819 229 RPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQ-L--------CP---------NLACLYSNRAAAHLALNNLHKAVD 290 (296)
Q Consensus 229 ~~~~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~-~--------~p---------~~~~ly~NRA~~~lkl~~~~~Ai~ 290 (296)
++.-..-..+.+.|.-+|+.|.|..++..|.+||+ . .| ....+.+|-+..|+.+|++..|..
T Consensus 277 T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Afq 356 (696)
T KOG2471|consen 277 TPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQ 356 (696)
T ss_pred cchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHH
Confidence 34444455567889999999999999999999995 1 11 245889999999999999999887
Q ss_pred HHHhc
Q psy5819 291 DASEV 295 (296)
Q Consensus 291 D~~~A 295 (296)
-+..|
T Consensus 357 Cf~~a 361 (696)
T KOG2471|consen 357 CFQKA 361 (696)
T ss_pred HHHHH
Confidence 66543
No 320
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=45.17 E-value=63 Score=18.97 Aligned_cols=29 Identities=14% Similarity=0.051 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q psy5819 254 AVSAYSHGLQLCPNLACLYSNRAAAHLAL 282 (296)
Q Consensus 254 Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl 282 (296)
.+..-..+|..+|.+..++..|--+.-++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 45667789999999999999998887665
No 321
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.99 E-value=69 Score=28.82 Aligned_cols=44 Identities=30% Similarity=0.314 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHh-----hCCCCh---HHHHHHHHHHHH-cCCHHHHHHHHHhc
Q psy5819 252 LGAVSAYSHGLQ-----LCPNLA---CLYSNRAAAHLA-LNNLHKAVDDASEV 295 (296)
Q Consensus 252 ~~Ai~~Yt~AI~-----~~p~~~---~ly~NRA~~~lk-l~~~~~Ai~D~~~A 295 (296)
..|..+|.+|+. +.|.+| .+.+|-|..|+. +|+..+|+.-+..|
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 567777777764 456655 788888887765 99999999887765
No 322
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=44.95 E-value=83 Score=25.93 Aligned_cols=56 Identities=16% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---------------hHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL---------------ACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~---------------~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
+-..|+..|+.+++-.||-.|.+|+.+..+. ...--|.|.-|-.+|+..=.+....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLq 74 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQ 74 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHH
Confidence 4457999999999999999999999654321 1222356666667777665555543
No 323
>PLN03218 maturation of RBCL 1; Provisional
Probab=42.98 E-value=1e+02 Score=34.06 Aligned_cols=54 Identities=19% Similarity=0.017 Sum_probs=24.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHH
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCP-NLACLYSNRAAAHLALNNLHKAVDD 291 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p-~~~~ly~NRA~~~lkl~~~~~Ai~D 291 (296)
+....+.+.+.|++..|+..|...++... -+...|+....+|.+.|++.+|+.-
T Consensus 652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~l 706 (1060)
T PLN03218 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALEL 706 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 34444444555555555555555444321 1334444444444444444444433
No 324
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=41.47 E-value=38 Score=22.31 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=17.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHh
Q psy5819 273 SNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 273 ~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+++|.+|+.+|++..|..-...
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~e 24 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEE 24 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHH
Confidence 5788899999998888765443
No 325
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=41.09 E-value=1.6e+02 Score=22.29 Aligned_cols=41 Identities=24% Similarity=0.190 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 254 AVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 254 Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
.+....+++..+|.+..+.+..|.+++.-|++..|+.-+-.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~ 47 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLE 47 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 46778899999999999999999999999999999986643
No 326
>KOG3824|consensus
Probab=40.81 E-value=1.2e+02 Score=29.11 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
...+....+.|+.+.|...|..|+.++|.++.++.-.+.-.-.-++.-.|=..+.
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~ 174 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYV 174 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhh
Confidence 3456677899999999999999999999999887766654444444444443333
No 327
>KOG4056|consensus
Probab=40.29 E-value=51 Score=27.45 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=29.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACL 271 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~l 271 (296)
-.+.|..++.+|++.++..++..||..++.-+.|
T Consensus 84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred HHHhHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 3578999999999999999999999999874433
No 328
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=40.20 E-value=31 Score=30.37 Aligned_cols=26 Identities=15% Similarity=0.068 Sum_probs=14.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYS 259 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt 259 (296)
-++.+.-.+-+++..|+..+|+...+
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN 157 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLN 157 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 35555555555555555555554443
No 329
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.11 E-value=50 Score=29.29 Aligned_cols=46 Identities=26% Similarity=0.345 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~ 284 (296)
+...--+|+.+...|+-.+|...|.+|+..+++.+ -|-...+||++
T Consensus 159 ~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~----~~~~lqmKLn~ 204 (207)
T COG2976 159 AIVAELRGDILLAKGDKQEARAAYEKALESDASPA----AREILQMKLNN 204 (207)
T ss_pred HHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH----HHHHHHhHHHh
Confidence 34455679999999999999999999998875432 24444555544
No 330
>KOG3081|consensus
Probab=38.39 E-value=58 Score=30.35 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=44.3
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 237 WVKAKGDQMFR----DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 237 ~lk~~Gn~~fk----~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
.+-+.++.+.+ .+.++.|.-.|..-=...+..+.+.+-.|.||+.+|+|.+|..-...
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 34445555532 34589999999988876666888899999999999999999765443
No 331
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=38.34 E-value=1.5e+02 Score=30.23 Aligned_cols=61 Identities=18% Similarity=0.141 Sum_probs=52.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+...-..-......||...|-.-.-.+|+..|.++.+..-||..+-.||.|+.|+.|.+-|
T Consensus 289 ~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~ 349 (831)
T PRK15180 289 IREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDV 349 (831)
T ss_pred hhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhch
Confidence 3444455567788999999999999999999999999999999999999999999887643
No 332
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=37.94 E-value=74 Score=27.79 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=29.1
Q ss_pred CCChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCChHH
Q psy5819 232 ENNPDWVKAKGDQMFRDG-----------NYLGAVSAYSHGLQLCPNLACL 271 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g-----------~y~~Ai~~Yt~AI~~~p~~~~l 271 (296)
+.....+..-||.+...+ .|..|..+|.+|...+|++..+
T Consensus 66 P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 66 PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 344567888899887544 3899999999999999987643
No 333
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=37.17 E-value=57 Score=30.18 Aligned_cols=46 Identities=22% Similarity=0.221 Sum_probs=39.5
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAA 277 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~ 277 (296)
..+|..+.++|-.|.+.|.|..|++.++..++.+|+.+.+-.-|+.
T Consensus 212 P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 212 PEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred CCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 4457889999999999999999999999999999998866655543
No 334
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=36.62 E-value=1.5e+02 Score=28.80 Aligned_cols=56 Identities=14% Similarity=-0.017 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHH--cCCHHHHHHHHH
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCP-----NLACLYSNRAAAHLA--LNNLHKAVDDAS 293 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p-----~~~~ly~NRA~~~lk--l~~~~~Ai~D~~ 293 (296)
...++..+|+.++|..|...|..++...+ ....+|.+.|.||.. .-+|.+|..-.+
T Consensus 133 e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 133 EQGYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 34567789999999999999999997754 235677777777765 667888876655
No 335
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.07 E-value=86 Score=31.68 Aligned_cols=53 Identities=19% Similarity=0.144 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHH
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK 287 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~ 287 (296)
+...++.|.+.|.+|+|.=|.+..++++-.+|.+..+..-.|.|+-+||--.+
T Consensus 452 adrVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE 504 (655)
T COG2015 452 ADRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAE 504 (655)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhc
Confidence 56788999999999999999999999999999999999889999988885433
No 336
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=35.92 E-value=1.2e+02 Score=31.47 Aligned_cols=55 Identities=13% Similarity=-0.149 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHH
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP-NLACLYSNRAAAHLALNNLHKAV 289 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p-~~~~ly~NRA~~~lkl~~~~~Ai 289 (296)
...+......+.+.|++.+|+..|.+.....- -+...|.....+|.++|.+..|.
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 345 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK 345 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHH
Confidence 44555666666666666666666666554321 13334444444444444444443
No 337
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=35.77 E-value=55 Score=27.53 Aligned_cols=29 Identities=17% Similarity=0.403 Sum_probs=26.3
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Q psy5819 239 KAKGDQMFRDG-NYLGAVSAYSHGLQLCPN 267 (296)
Q Consensus 239 k~~Gn~~fk~g-~y~~Ai~~Yt~AI~~~p~ 267 (296)
...|..++..| ++.+|+.+|..||..+|.
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 56799999999 999999999999999985
No 338
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=35.12 E-value=1.7e+02 Score=26.68 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=45.8
Q ss_pred CChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC----CC----------ChHHHHHHHHHHHHcCCHHHHH
Q psy5819 233 NNPDWVKAKGDQMFRDG-NYLGAVSAYSHGLQLC----PN----------LACLYSNRAAAHLALNNLHKAV 289 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g-~y~~Ai~~Yt~AI~~~----p~----------~~~ly~NRA~~~lkl~~~~~Ai 289 (296)
.-+..+.+-|..++..+ +|..|+.-.++|+++. .. ...++..+|.||+..+.+....
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ 104 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVE 104 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 34778899999999999 9999999999999883 21 2367777999999988876543
No 339
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=34.77 E-value=1e+02 Score=28.88 Aligned_cols=48 Identities=17% Similarity=0.074 Sum_probs=41.2
Q ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 248 DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 248 ~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.......+.....-|..+|+++.-+.-.+-+|+.+|++..|..-+.+|
T Consensus 135 ~~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A 182 (287)
T COG4235 135 EQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNA 182 (287)
T ss_pred cccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHH
Confidence 334566667777888999999999999999999999999999988876
No 340
>PRK11906 transcriptional regulator; Provisional
Probab=34.39 E-value=89 Score=31.15 Aligned_cols=48 Identities=2% Similarity=-0.249 Sum_probs=43.1
Q ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 249 g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.+-..|+..-.+|++++|.++.++...|.+....+++..|+.-+.+|+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~ 365 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAK 365 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHh
Confidence 345788999999999999999999999999999999999999888773
No 341
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=33.97 E-value=76 Score=23.73 Aligned_cols=30 Identities=20% Similarity=0.055 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
+....++|-.+=..|+..+|+.+|.+||+.
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 455667777776778999999999999864
No 342
>KOG2114|consensus
Probab=33.97 E-value=52 Score=35.13 Aligned_cols=30 Identities=17% Similarity=0.416 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
++.++.-|+-+|++|+|++|...|-++|..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 567788899999999999999999999954
No 343
>KOG3364|consensus
Probab=33.95 E-value=73 Score=26.70 Aligned_cols=33 Identities=15% Similarity=-0.004 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHH
Q psy5819 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACL 271 (296)
Q Consensus 239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~l 271 (296)
.-.+-.+++.|+|..|+.+.+..|+..|++..+
T Consensus 75 yYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa 107 (149)
T KOG3364|consen 75 YYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA 107 (149)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH
Confidence 333444445555555555555555555544433
No 344
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.91 E-value=1.5e+02 Score=26.96 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=16.1
Q ss_pred HcCCHHHHHHHHHHHHhhCCCC---hHHHHHHHHH
Q psy5819 247 RDGNYLGAVSAYSHGLQLCPNL---ACLYSNRAAA 278 (296)
Q Consensus 247 k~g~y~~Ai~~Yt~AI~~~p~~---~~ly~NRA~~ 278 (296)
-.|+|..|..-.+-+-.++|++ +.+|.|.-.|
T Consensus 47 vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 47 VAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3555555555555555555542 3444444333
No 345
>KOG2997|consensus
Probab=33.82 E-value=51 Score=31.42 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYS 273 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~ 273 (296)
.+.|..+...|-..-+.|...+||+.|..|+++-|+--.+|.
T Consensus 16 ~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 16 AKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 334677888888889999999999999999999998666655
No 346
>PLN03077 Protein ECB2; Provisional
Probab=33.65 E-value=1e+02 Score=32.72 Aligned_cols=54 Identities=9% Similarity=0.015 Sum_probs=22.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQL--CPNLACLYSNRAAAHLALNNLHKAVDDA 292 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--~p~~~~ly~NRA~~~lkl~~~~~Ai~D~ 292 (296)
+..-.+.+.+.|++..|+..|.+.++. .|+ ...|...-.+|.+.|.+.+|..-+
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHH
Confidence 333344444455555555555544432 222 222333333344445555544433
No 347
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=33.39 E-value=1.3e+02 Score=25.55 Aligned_cols=47 Identities=17% Similarity=-0.024 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Q psy5819 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNL 285 (296)
Q Consensus 239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~ 285 (296)
.--|--+...|+|.+|+..+....+-.+..+.+-.-.|.|..-+|++
T Consensus 48 ~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 48 MFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 34577789999999999999999988888887777889999999984
No 348
>KOG3364|consensus
Probab=32.89 E-value=1.3e+02 Score=25.16 Aligned_cols=59 Identities=12% Similarity=0.033 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHh-hCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 236 DWVKAKGDQMFRDG---NYLGAVSAYSHGLQ-LCPN-LACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g---~y~~Ai~~Yt~AI~-~~p~-~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
+...+-+=.+.+.. +-+..|..+...++ -.|. .-.+.+-.|..|+++|+|..++..++.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ 96 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDA 96 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHH
Confidence 34455555565544 46788999999997 4443 346666799999999999999998874
No 349
>KOG2471|consensus
Probab=32.60 E-value=87 Score=31.76 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=45.3
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA 281 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lk 281 (296)
++-+.+.+-|-.++..|+-..|..||.+|...--.++.+|...|.|++.
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999985
No 350
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=32.17 E-value=93 Score=23.38 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP 266 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p 266 (296)
...+...|......|++.+|+..+.+||++..
T Consensus 41 ~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 41 AYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999998754
No 351
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=31.57 E-value=99 Score=29.21 Aligned_cols=53 Identities=17% Similarity=0.135 Sum_probs=38.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
+|--+.--...+++.|+...|..+-.+ .+ +..|...|+++|+|.+|+..|.+.
T Consensus 236 sPIGyepFv~~~~~~~~~~eA~~yI~k----~~-----~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 236 SPIGYEPFVEACLKYGNKKEASKYIPK----IP-----DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCChHHHHHHHHHCCCHHHHHHHHHh----CC-----hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 344444555667777887777665554 11 268999999999999999998764
No 352
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=31.09 E-value=98 Score=24.34 Aligned_cols=32 Identities=16% Similarity=0.193 Sum_probs=27.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC 265 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~ 265 (296)
.+..+...|..++..||...|--.|.+.+.+.
T Consensus 37 sa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999988664
No 353
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=29.99 E-value=99 Score=30.37 Aligned_cols=56 Identities=18% Similarity=0.144 Sum_probs=39.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---------ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPN---------LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 239 k~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~---------~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
......+.-.|||..|+..... |+++.. ..++|+.-|-||+.|++|..||.-++.+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455567999999876543 222221 4478888999999999999999887653
No 354
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=29.91 E-value=2.9e+02 Score=25.24 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 235 PDWVKAKGDQMFR-DGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 235 ~~~lk~~Gn~~fk-~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
...+..-|.--+. .++...|...|..+++.-|.+..++..=....+++|+...|-.-+.+|
T Consensus 35 ~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 35 YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERA 96 (280)
T ss_dssp THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3455555655566 677888999999999999999888887777888999988887766654
No 355
>PRK10316 hypothetical protein; Provisional
Probab=29.60 E-value=3e+02 Score=24.48 Aligned_cols=59 Identities=14% Similarity=0.005 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 237 WVKAKGDQMFRDGNYLGAVSAYSHG-------LQLCPN-LACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 237 ~lk~~Gn~~fk~g~y~~Ai~~Yt~A-------I~~~p~-~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.-...+|..++.|+..+|++...-+ +.+-|- ...--.+||..++..|+|.+|-.-...|
T Consensus 129 ~Ava~AN~~Lk~Gd~~~A~e~LklAgvdv~~~~al~PL~qT~~~V~~A~~ll~~gkyyeA~~aLk~a 195 (209)
T PRK10316 129 AAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQTRNAVADAQKLLDKGKYYEANLALKGA 195 (209)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCcchhhHhHhcCchhhHHHHHHHHHHHhCCChhHHHHHHHhh
Confidence 3466899999999999999877553 233342 2245578999999999999986655443
No 356
>KOG1586|consensus
Probab=29.58 E-value=1.7e+02 Score=26.87 Aligned_cols=34 Identities=6% Similarity=0.159 Sum_probs=25.0
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN 267 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~ 267 (296)
++..-.-.+..+|+.++-..|+++...||++-.+
T Consensus 72 Daat~YveA~~cykk~~~~eAv~cL~~aieIyt~ 105 (288)
T KOG1586|consen 72 DAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTD 105 (288)
T ss_pred hHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHh
Confidence 3444455566678888999999999999987553
No 357
>KOG4507|consensus
Probab=28.99 E-value=1e+02 Score=31.94 Aligned_cols=42 Identities=19% Similarity=0.218 Sum_probs=36.4
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHH
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYS 273 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~ 273 (296)
...|..+...|+.++...|...||.++.+|++++|+++.+-.
T Consensus 673 ~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~ 714 (886)
T KOG4507|consen 673 SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECEN 714 (886)
T ss_pred ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHH
Confidence 334778889999999999999999999999999999876544
No 358
>KOG0495|consensus
Probab=28.11 E-value=1.8e+02 Score=30.62 Aligned_cols=53 Identities=13% Similarity=0.078 Sum_probs=45.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 242 GDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 242 Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
++-.--.++..+|+.....+|+.-|.+..+|+..+..+-.+++.+.|...|..
T Consensus 658 ~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~ 710 (913)
T KOG0495|consen 658 ANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQ 710 (913)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 33334467889999999999999999999999999999999999999877754
No 359
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=27.89 E-value=78 Score=35.40 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=40.3
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CChHHHHHHHHHHHHcC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP------NLACLYSNRAAAHLALN 283 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p------~~~~ly~NRA~~~lkl~ 283 (296)
.....|..|+-++..|.|.+|+..|+.|+.+.. +.+.++-..|.|.+-++
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~ 296 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLS 296 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHh
Confidence 456678899999999999999999999997654 35677777777777544
No 360
>KOG1585|consensus
Probab=26.40 E-value=2.5e+02 Score=26.13 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------ChHHHHHHHHHHHHcCCHHHHH
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN------LACLYSNRAAAHLALNNLHKAV 289 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~------~~~ly~NRA~~~lkl~~~~~Ai 289 (296)
+..-.+++.....+-+-+.|+..|++++.+... -..+|..-|..+.++..|.+|-
T Consensus 110 AAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa 170 (308)
T KOG1585|consen 110 AAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAA 170 (308)
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHH
Confidence 556677888888999999999999999876432 1256666666666676666653
No 361
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=25.70 E-value=1.9e+02 Score=24.32 Aligned_cols=60 Identities=13% Similarity=0.090 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH-hhC------C-CChHHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 236 DWVKAKGDQMFRDGNYLGAVSAYSHGL-QLC------P-NLACLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 236 ~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI-~~~------p-~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
......+|.+++.|+.++|......+= +++ | ....-..++|..++..|+|.+|-.-...|
T Consensus 76 ~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A 143 (155)
T PF10938_consen 76 KAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQA 143 (155)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456788999999999999988765531 111 1 12366779999999999999997665543
No 362
>KOG2758|consensus
Probab=24.10 E-value=2.4e+02 Score=27.17 Aligned_cols=62 Identities=21% Similarity=0.228 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC--CChHHHHHHHHHHHHcCCHHHHHHHHHhcC
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHGLQL--CP--NLACLYSNRAAAHLALNNLHKAVDDASEVR 296 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~--~p--~~~~ly~NRA~~~lkl~~~~~Ai~D~~~A~ 296 (296)
.+.+..-+.-.|..|||.+|-.+.-.-..+ ++ +..++....=+.-+-+.+|+.|++|..+-|
T Consensus 129 i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~edL~rLr 194 (432)
T KOG2758|consen 129 IETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALEDLTRLR 194 (432)
T ss_pred HHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 355666677779999999988765443333 22 234444455566677899999999987643
No 363
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.74 E-value=3e+02 Score=24.43 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=13.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 272 YSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 272 y~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
.--|+-+++..|+-.+|..-+.+|
T Consensus 162 ~elrGDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 162 AELRGDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred HHHhhhHHHHcCchHHHHHHHHHH
Confidence 334666666666666666655544
No 364
>KOG4151|consensus
Probab=23.49 E-value=59 Score=34.28 Aligned_cols=51 Identities=27% Similarity=0.258 Sum_probs=45.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 243 DQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 243 n~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
+.+...|+|..++.-.+-|+...|....+++-||.||--++.++-|++|..
T Consensus 101 ~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~ 151 (748)
T KOG4151|consen 101 YMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLR 151 (748)
T ss_pred HhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 344568899999999999999999999999999999999999999999843
No 365
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=23.25 E-value=1.4e+02 Score=16.67 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=18.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q psy5819 242 GDQMFRDGNYLGAVSAYSHGLQL 264 (296)
Q Consensus 242 Gn~~fk~g~y~~Ai~~Yt~AI~~ 264 (296)
-..+.+.|++..|+..|.+....
T Consensus 7 i~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 7 IDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc
Confidence 35678999999999999887643
No 366
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=22.59 E-value=3.9e+02 Score=23.54 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHH
Q psy5819 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL-ACLYSNRAA 277 (296)
Q Consensus 233 ~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~-~~ly~NRA~ 277 (296)
....-+.-.|.-..+.|++.+|+..|++.|..-... ...+.++|-
T Consensus 163 ~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 345667778999999999999999999999654322 346666654
No 367
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=22.58 E-value=2.5e+02 Score=25.52 Aligned_cols=45 Identities=20% Similarity=0.167 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhh-----CCCCh---HHHHHHHHHHHH-cCCHHHHHHHHHhc
Q psy5819 251 YLGAVSAYSHGLQL-----CPNLA---CLYSNRAAAHLA-LNNLHKAVDDASEV 295 (296)
Q Consensus 251 y~~Ai~~Yt~AI~~-----~p~~~---~ly~NRA~~~lk-l~~~~~Ai~D~~~A 295 (296)
-..|..+|..|+.+ .|.+| .+.+|-|..|+. ++++.+|+.-+..|
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~a 197 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 197 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34778888888754 45554 677888888775 68888888765544
No 368
>KOG2796|consensus
Probab=22.50 E-value=2.5e+02 Score=26.44 Aligned_cols=52 Identities=13% Similarity=0.179 Sum_probs=36.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy5819 242 GDQMFRDGNYLGAVSAYSHGLQLC-PNLACLYSNRAAAHLALNNLHKAVDDAS 293 (296)
Q Consensus 242 Gn~~fk~g~y~~Ai~~Yt~AI~~~-p~~~~ly~NRA~~~lkl~~~~~Ai~D~~ 293 (296)
.+.+...|.|.-.+..|.+.|+.+ |..+.+.+..+...++.|+...|-..++
T Consensus 184 ~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~ 236 (366)
T KOG2796|consen 184 ANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQ 236 (366)
T ss_pred HHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 344456778888888888888877 4567777777777777777766655544
No 369
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=21.39 E-value=1.9e+02 Score=21.26 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy5819 235 PDWVKAKGDQMFRDGNYLGAVSAYSHG 261 (296)
Q Consensus 235 ~~~lk~~Gn~~fk~g~y~~Ai~~Yt~A 261 (296)
+..+.+-|.-++..||+..|+.+++=|
T Consensus 35 A~~Y~~D~~~fl~~gD~v~Ala~~sYa 61 (75)
T PF04010_consen 35 AESYLEDGKYFLEKGDYVNALACFSYA 61 (75)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 667888899999999999999988755
No 370
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=21.33 E-value=71 Score=23.86 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=11.6
Q ss_pred HHHHHHHHHHcCCHHHHHHH
Q psy5819 238 VKAKGDQMFRDGNYLGAVSA 257 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~ 257 (296)
+-.+.+..+..|||.+|..+
T Consensus 40 ~s~kv~~~~~~Gd~~~A~~a 59 (82)
T PF04505_consen 40 YSSKVRSRYAAGDYEGARRA 59 (82)
T ss_pred echhhHHHHHCCCHHHHHHH
Confidence 33455666666666666443
No 371
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.21 E-value=2e+02 Score=25.37 Aligned_cols=44 Identities=20% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Q psy5819 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL 282 (296)
Q Consensus 238 lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~~ly~NRA~~~lkl 282 (296)
--..|-..++.|+|..|...|.+... +..-+....|||...+.+
T Consensus 170 rEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~mldl 213 (221)
T COG4649 170 REALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLDL 213 (221)
T ss_pred HHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHHH
Confidence 34558888999999999999998876 666777888999887754
No 372
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=20.84 E-value=2.9e+02 Score=22.49 Aligned_cols=37 Identities=14% Similarity=0.135 Sum_probs=22.9
Q ss_pred eCCEEEEEEEeCCCCCCcceEEeeccEEEEeecceEE
Q psy5819 13 TPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGNYIF 49 (296)
Q Consensus 13 T~~~V~i~V~l~~~~~~~~~V~~~~~~lkv~~~~~~~ 49 (296)
-...|.+-|.|.+.+..++.+.-....|.|.+|+..+
T Consensus 44 ~~g~v~~GiDLs~i~~~~i~~d~~~~~i~I~LP~~~i 80 (157)
T PF14014_consen 44 YPGTVKAGIDLSKIKEEDIEVDEDGKTITITLPPPEI 80 (157)
T ss_pred EEEEEEEEEEhHHCCcceEEEcCCCCEEEEECCCcEE
Confidence 3444555555555555556665578889999875443
No 373
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=20.71 E-value=1.2e+02 Score=16.76 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=17.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q psy5819 242 GDQMFRDGNYLGAVSAYSHGLQ 263 (296)
Q Consensus 242 Gn~~fk~g~y~~Ai~~Yt~AI~ 263 (296)
-+.+.+.|++.+|...|.+-.+
T Consensus 7 i~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 7 ISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHccchHHHHHHHHHHHhH
Confidence 4567889999999999987664
No 374
>PF15469 Sec5: Exocyst complex component Sec5
Probab=20.56 E-value=1.1e+02 Score=26.02 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=19.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhC
Q psy5819 243 DQMFRDGNYLGAVSAYSHGLQLC 265 (296)
Q Consensus 243 n~~fk~g~y~~Ai~~Yt~AI~~~ 265 (296)
..+.+.|+|..|+..|.+|-.+-
T Consensus 94 ~~~i~~~dy~~~i~dY~kak~l~ 116 (182)
T PF15469_consen 94 RECIKKGDYDQAINDYKKAKSLF 116 (182)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHH
Confidence 36688999999999999998654
No 375
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=20.45 E-value=4.6e+02 Score=23.49 Aligned_cols=33 Identities=9% Similarity=0.150 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy5819 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCP 266 (296)
Q Consensus 234 ~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p 266 (296)
++.-+...++..|..+++..|........+.+|
T Consensus 123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p 155 (251)
T COG4700 123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP 155 (251)
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence 345555666666666666666666666555555
No 376
>KOG3783|consensus
Probab=20.29 E-value=1.7e+02 Score=29.72 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ChHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy5819 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN----LACLYSNRAAAHLALNNLHKAVDDASE 294 (296)
Q Consensus 232 ~~~~~~lk~~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~----~~~ly~NRA~~~lkl~~~~~Ai~D~~~ 294 (296)
...+.|+...|.-++..|+-+.|+..++.++. +. ...+|.-||-|+..+.+|..|..+|..
T Consensus 264 p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 264 PKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred CCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 34578999999999999998889999988887 32 357888899999999999888877754
No 377
>KOG1941|consensus
Probab=20.28 E-value=1.1e+02 Score=29.85 Aligned_cols=54 Identities=13% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCh------HHHHHHHHHHHHcCCHHHHHHHHHhc
Q psy5819 242 GDQMFRDGNYLGAVSAYSHGLQLCPNLA------CLYSNRAAAHLALNNLHKAVDDASEV 295 (296)
Q Consensus 242 Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~~------~ly~NRA~~~lkl~~~~~Ai~D~~~A 295 (296)
|+.+...+.|+.|++.|..|+++...+. ..+.-.+.-|-.+++|.+|+--..+|
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKA 188 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhH
No 378
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=20.03 E-value=1.3e+02 Score=27.58 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=19.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy5819 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNL 268 (296)
Q Consensus 241 ~Gn~~fk~g~y~~Ai~~Yt~AI~~~p~~ 268 (296)
.|.-.-+.|++..|..+|.+.++++|.+
T Consensus 35 ~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 35 LGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 4555566777777777777777777754
Done!