RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5819
(296 letters)
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 68.4 bits (168), Expect = 1e-14
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
K KG++ F+ G+Y A+ Y+ ++ P A LYSNRAA L +A+DD
Sbjct: 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDT 72
Score = 31.0 bits (71), Expect = 0.15
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPN 267
+ ++K K + + A AY LQ+ P+
Sbjct: 77 DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS 113
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 68.4 bits (168), Expect = 1e-14
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
K KG++ F+ G+Y A+ Y+ ++ P A LYSNRAA + L A+ D E
Sbjct: 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEE 75
Score = 34.1 bits (79), Expect = 0.017
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 3/54 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284
P ++K K + +Y A+ Y L L + +A N
Sbjct: 80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, HSP70, protein binding, chaperone; 1.60A {Homo
sapiens} SCOP: a.118.8.1
Length = 118
Score = 67.6 bits (166), Expect = 2e-14
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
K KG++ GN A+ YS ++L P+ LYSNR+AA+ + KA +D +
Sbjct: 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCK 63
Score = 33.3 bits (77), Expect = 0.021
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 3/37 (8%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPN 267
PDW K K + + A Y GL+ N
Sbjct: 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 67.3 bits (165), Expect = 3e-14
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
+ +G + F ++ AV AY+ ++ P A YSNRAAA L + +A+ D ++
Sbjct: 8 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63
Score = 28.8 bits (65), Expect = 1.0
Identities = 9/50 (18%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHL 280
+P++V+A K Y A+ + S R L
Sbjct: 68 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 117
>2l6j_A TPR repeat-containing protein associated with HSP;
tetratricopeptide repeat (TPR), HSP90 CO-factor, protein
BIN; NMR {Saccharomyces cerevisiae}
Length = 111
Score = 65.8 bits (161), Expect = 7e-14
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
K +G+ +F+ G Y AV Y + P YSN+A A + L +A+ +
Sbjct: 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 66.2 bits (162), Expect = 9e-14
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
K +G+++F Y A + Y + P +A Y+NRA +L + +A+ D
Sbjct: 13 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Score = 28.4 bits (64), Expect = 1.4
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPN 267
+ VKA G +Y A++ L
Sbjct: 73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 65.9 bits (161), Expect = 2e-13
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
K++G+ Y A+ Y+ L + P SNRAAA+ A KA +DA
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70
Score = 36.6 bits (85), Expect = 0.003
Identities = 6/47 (12%), Positives = 14/47 (29%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
G + A + P + +S A + + A + +
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKG 105
Score = 34.3 bits (79), Expect = 0.020
Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+P + KA G F +Y GA AY G++ N R L + ++
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKR-----GLETTKRKIE 129
Query: 291 DASE 294
+A+
Sbjct: 130 EANR 133
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 65.1 bits (159), Expect = 4e-13
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
K + + F+ +Y A+ YS ++L P+ A Y NR+ A+L A+ DA+
Sbjct: 17 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Score = 29.3 bits (66), Expect = 0.89
Identities = 8/59 (13%), Positives = 20/59 (33%), Gaps = 10/59 (16%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
+ ++K + G + A+ Y +++ P + A + +K V
Sbjct: 77 DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-------HDKDAKMKYQECNKIV 128
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus
interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 63.4 bits (155), Expect = 7e-13
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 230 PEENNP---DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLH 286
E + + +K +G++ + N+ AV Y ++L P A + NRAAA+ L N
Sbjct: 4 GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYA 63
Query: 287 KAVDDASE 294
AV D
Sbjct: 64 GAVQDCER 71
Score = 40.3 bits (95), Expect = 1e-04
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALN 283
+P + KA G + ++ AV+ Y L+L P+ SN A L L
Sbjct: 76 DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128
Score = 38.3 bits (90), Expect = 6e-04
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
GNY GAV + + P + Y A +LN +AV +
Sbjct: 60 GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106
>2dba_A Smooth muscle cell associated protein-1, isoform 2;
tetratricopeptide repeat, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 148
Score = 63.5 bits (155), Expect = 1e-12
Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCP---NLACLYSNRAAAHLALNNLHKAVDDASEV 295
+ +G+++F+ G+Y GA++AY+ L L + A L+ NRAA HL L + KA +AS+
Sbjct: 32 RKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA 91
Score = 26.9 bits (60), Expect = 4.8
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 10/59 (16%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
+ VKA + + + G AV + L P N+ AL N+
Sbjct: 95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK------NKVFQE-ALRNISGPS 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 64.6 bits (157), Expect = 3e-12
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
K +G+++F Y A + Y + P +A Y+NRA +L + +A+ D
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 58.5 bits (142), Expect = 5e-11
Identities = 10/56 (17%), Positives = 24/56 (42%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
K G+ ++ ++ A+ Y +L P +N+AA + + +K + +
Sbjct: 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63
>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta
strands, similar to P23, lacking LAST beta strand SEEN
in P23, protein degradation; NMR {Homo sapiens} SCOP:
b.15.1.3
Length = 114
Score = 54.9 bits (132), Expect = 6e-10
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRI 64
W QT S+V IT+ + NV + V+V SE + +Y + LL PI+ E S
Sbjct: 14 WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTF 73
Query: 65 RLENNEAEFELIKSEQAMWD--EKKDKRSK 92
++ + + E +L K E W+ E +
Sbjct: 74 KVLSTKIEIKLKKPEAVRWEKLEGQGDVPT 103
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 55.0 bits (133), Expect = 7e-10
Identities = 11/56 (19%), Positives = 24/56 (42%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
K G+ ++ ++ A Y ++L P+ Y+N+AA + + V +
Sbjct: 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Score = 31.1 bits (71), Expect = 0.18
Identities = 7/50 (14%), Positives = 12/50 (24%), Gaps = 7/50 (14%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACL-------YSNRAAAHLALNNLHKAVDD 291
+ V +++ S A N+L AV
Sbjct: 56 KKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105
>2xcm_C SGT1-like protein, cytosolic heat shock protein 90;
chaperone-protein binding complex, stress response;
HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*
Length = 92
Score = 53.3 bits (128), Expect = 1e-09
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 5/80 (6%)
Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY-----GNYIFEKLLLRPIVEEASRI 64
+ Q P +V +TV +P V++ E + + Y + L I+ + +
Sbjct: 7 YYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKY 66
Query: 65 RLENNEAEFELIKSEQAMWD 84
+ + + E L K++ W
Sbjct: 67 EVLSTKIEICLAKADIITWA 86
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 57.0 bits (138), Expect = 2e-09
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASE 294
K + + F+ +Y A+ YS ++L P+ A Y NR+ A+L A+ DA+
Sbjct: 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Score = 30.8 bits (70), Expect = 0.49
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 250 NYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
Y A+ + ++L Y RAA+++AL A+ D
Sbjct: 55 CYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD 96
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 57.0 bits (138), Expect = 2e-09
Identities = 13/63 (20%), Positives = 25/63 (39%)
Query: 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292
+ + G ++ G A+S + + P+ Y RA LA+ A+ D
Sbjct: 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL 83
Query: 293 SEV 295
++V
Sbjct: 84 TKV 86
Score = 45.1 bits (107), Expect = 2e-05
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 225 AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA----CLYSNRAAAHL 280
+ + + +++ RDG Y A S Y ++ P++A
Sbjct: 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFS 306
Query: 281 ALNNLHKAVDDASEV 295
+A+ SEV
Sbjct: 307 KDEKPVEAIRVCSEV 321
Score = 44.7 bits (106), Expect = 2e-05
Identities = 13/55 (23%), Positives = 21/55 (38%)
Query: 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
+ F G+Y A++ L++C A L RA + KA+ D
Sbjct: 149 QALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 203
Score = 39.7 bits (93), Expect = 7e-04
Identities = 6/63 (9%), Positives = 23/63 (36%)
Query: 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292
+ + + + + ++G A+S +L + + + + L + ++ +
Sbjct: 175 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEV 234
Query: 293 SEV 295
E
Sbjct: 235 REC 237
Score = 35.8 bits (83), Expect = 0.013
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
G A+ + +QL + R L L +A DD
Sbjct: 74 GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDD 116
Score = 35.4 bits (82), Expect = 0.019
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ A+ S LQ+ P+ +RA A+L +A+ D
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 351
Score = 31.6 bits (72), Expect = 0.32
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 3/60 (5%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
+ PD V A + + + Y A+ Y + N + A L K
Sbjct: 323 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKR 382
Score = 27.7 bits (62), Expect = 4.5
Identities = 9/80 (11%), Positives = 22/80 (27%), Gaps = 18/80 (22%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYS---------------NR 275
D+ A +G + + G A + L+ P+ ++
Sbjct: 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQ 149
Query: 276 AAAHLALNNLHKAVDDASEV 295
A + A+ ++
Sbjct: 150 ALNAFGSGDYTAAIAFLDKI 169
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone,
endoplasmic reticulum, TPR repeat, UNF protein response;
2.51A {Mus musculus}
Length = 359
Score = 55.0 bits (133), Expect = 8e-09
Identities = 13/62 (20%), Positives = 25/62 (40%)
Query: 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDAS 293
+ + G ++ G A+S + + P+ Y RA LA+ A+ D +
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 294 EV 295
+V
Sbjct: 62 KV 63
Score = 44.6 bits (106), Expect = 2e-05
Identities = 12/55 (21%), Positives = 20/55 (36%)
Query: 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
+ F +Y A++ L++C A L RA + KA+ D
Sbjct: 126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAA 180
Score = 43.4 bits (103), Expect = 4e-05
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 4/75 (5%)
Query: 225 AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA----CLYSNRAAAHL 280
+ + + +++ RDG Y A S Y ++ P++A
Sbjct: 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFS 283
Query: 281 ALNNLHKAVDDASEV 295
+A+ SEV
Sbjct: 284 KDEKPVEAIRICSEV 298
Score = 38.8 bits (91), Expect = 0.002
Identities = 7/67 (10%), Positives = 22/67 (32%), Gaps = 3/67 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
E + + + ++G A+S +L + + + + L + +
Sbjct: 148 EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS 207
Query: 289 VDDASEV 295
+ + E
Sbjct: 208 LSEVREC 214
Score = 36.1 bits (84), Expect = 0.011
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
G A+ + + L + R L L +A DD
Sbjct: 51 GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDD 93
Score = 34.9 bits (81), Expect = 0.026
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ A+ S LQ+ P+ +RA A+L +A+ D
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD 328
Score = 33.0 bits (76), Expect = 0.11
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284
PD V A + + + Y A+ Y + N + A L
Sbjct: 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQ 355
Score = 29.2 bits (66), Expect = 1.7
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLA 281
D+ A +G + + G A + L+ P+ + A
Sbjct: 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA 117
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR
repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae}
PDB: 3fp3_A 3fp4_A 3lca_A
Length = 537
Score = 53.6 bits (129), Expect = 3e-08
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 231 EENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK 287
+ +G+ F N+ A+ Y + ++L PN YSN +A +++ +L K
Sbjct: 18 PSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEK 77
Query: 288 AVDD 291
++
Sbjct: 78 VIEF 81
Score = 37.8 bits (88), Expect = 0.003
Identities = 8/43 (18%), Positives = 14/43 (32%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
N + + L P Y +R + L + A +D
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKED 332
Score = 37.0 bits (86), Expect = 0.007
Identities = 8/63 (12%), Positives = 21/63 (33%), Gaps = 3/63 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
NP+ V +++ G + + + ++ P L + + A + A
Sbjct: 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA 397
Query: 289 VDD 291
+
Sbjct: 398 IKQ 400
Score = 37.0 bits (86), Expect = 0.007
Identities = 6/51 (11%), Positives = 17/51 (33%)
Query: 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ + + A+ + +L P A L + + +A++
Sbjct: 434 QDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484
Score = 36.2 bits (84), Expect = 0.010
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
E +P+ G+ + + L++ P+ + RA+A+ +L N A
Sbjct: 53 ELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDA 112
Query: 289 VDD 291
+ D
Sbjct: 113 MFD 115
Score = 34.7 bits (80), Expect = 0.035
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
NP++ +G F +Y A + L P Y A ++
Sbjct: 306 NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEA 365
Query: 291 D 291
Sbjct: 366 F 366
Score = 32.8 bits (75), Expect = 0.13
Identities = 6/65 (9%), Positives = 16/65 (24%), Gaps = 3/65 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
P + + + G++ A+ Y +L ++ L +
Sbjct: 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431
Query: 289 VDDAS 293
Sbjct: 432 SSQDP 436
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 53.2 bits (128), Expect = 3e-08
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 234 NPDWV---KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+ K KG+Q FR+ Y A+ Y+ L+L + YSN +A ++++ +L K V+
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVE 60
Query: 291 DASE 294
+++
Sbjct: 61 MSTK 64
Score = 39.3 bits (92), Expect = 0.001
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+P+ + +R+ + + +S + P + + A N+ KA+
Sbjct: 334 DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK 393
Query: 291 D 291
Sbjct: 394 Q 394
Score = 39.0 bits (91), Expect = 0.001
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
G+ V + L+L P+ + + RA+A+ L A+ D S +
Sbjct: 53 GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99
Score = 37.4 bits (87), Expect = 0.005
Identities = 12/67 (17%), Positives = 18/67 (26%), Gaps = 3/67 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
+ + + +G F NY A + +L P Y A N
Sbjct: 298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDC 357
Query: 289 VDDASEV 295
SE
Sbjct: 358 ETLFSEA 364
Score = 36.6 bits (85), Expect = 0.007
Identities = 9/72 (12%), Positives = 23/72 (31%), Gaps = 12/72 (16%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAA---------H 279
P+ + + + ++ A+ Y ++L L +Y A +
Sbjct: 366 RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRN 425
Query: 280 LALNNLHKAVDD 291
+ N +A +
Sbjct: 426 PTVENFIEATNL 437
Score = 36.6 bits (85), Expect = 0.007
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 4/71 (5%)
Query: 224 IAADLRPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHL 280
+ + E+ + G F + LGA ++L P + Y A
Sbjct: 223 LDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNS-YIYMALIMA 281
Query: 281 ALNNLHKAVDD 291
N+ + +
Sbjct: 282 DRNDSTEYYNY 292
Score = 35.9 bits (83), Expect = 0.015
Identities = 7/43 (16%), Positives = 15/43 (34%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
N++ A + +L P A L ++ +A+
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITL 471
Score = 34.7 bits (80), Expect = 0.028
Identities = 9/43 (20%), Positives = 18/43 (41%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ + + L+L N + +Y +R + L N +A D
Sbjct: 284 NDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKD 326
Score = 27.8 bits (62), Expect = 4.5
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 9/85 (10%)
Query: 200 RESTAPEEEEWLQKQAEARQACGFIAADLRPEENNPDWVKA---KGDQMFRDGNYLGAVS 256
++T ++ EA A+ L +P +A + + A++
Sbjct: 417 GKATLLTRNPTVENFIEATNLLE-KASKL-----DPRSEQAKIGLAQMKLQQEDIDEAIT 470
Query: 257 AYSHGLQLCPNLACLYSNRAAAHLA 281
+ L + A A
Sbjct: 471 LFEESADLARTMEEKLQAITFAEAA 495
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 49.1 bits (118), Expect = 4e-07
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
NP+ + +G + F ++ AV AY+ ++ P A YSNRAAA L + +A+
Sbjct: 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194
Query: 291 DASEV 295
D ++
Sbjct: 195 DCNKA 199
Score = 39.1 bits (92), Expect = 8e-04
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
KA+G++ ++ + A+ Y+ +L ++ +NRAAA A+
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60
Score = 38.3 bits (90), Expect = 0.002
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
++ A++ + ++ PN Y +A A +A+ A++
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET 229
Score = 36.4 bits (85), Expect = 0.007
Identities = 7/51 (13%), Positives = 19/51 (37%)
Query: 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ + G Y A+S + ++ + Y + + + N + + D
Sbjct: 44 RAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGD 94
Score = 33.7 bits (78), Expect = 0.045
Identities = 7/62 (11%), Positives = 15/62 (24%), Gaps = 2/62 (3%)
Query: 232 ENNPDWVKA--KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
E + D + + N + + P A + ++ AV
Sbjct: 100 EYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159
Query: 290 DD 291
Sbjct: 160 KA 161
Score = 31.8 bits (73), Expect = 0.21
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 3/52 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL 282
+P++V+A K Y A+ + S R L
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 45.8 bits (109), Expect = 2e-06
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 18/76 (23%)
Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL------------------ACLYSNRAAAH 279
++ KG+++F +Y A+ AY L L LY+N + +
Sbjct: 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCY 73
Query: 280 LALNNLHKAVDDASEV 295
L + +LH+A + +SEV
Sbjct: 74 LNIGDLHEAEETSSEV 89
>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2,
structure initiative; 1.66A {Encephalitozoon cuniculi}
Length = 131
Score = 43.7 bits (103), Expect = 7e-06
Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 9 CWRQTPSKVFITVPL-YNVPTHKVDVFTSESYIKLHY-GNYIFEKLLLRPIVEEASRIRL 66
W Q +++ I P+ + + + + I + G + + LL + + +
Sbjct: 8 TWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQGEIVIDGELLHEVDVSSLWWVI 67
Query: 67 ENNEAEFELIKSEQAMWDE 85
+ + + K WD
Sbjct: 68 NGDVVDVNVTKKRNEWWDS 86
>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone,
beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2
Length = 125
Score = 43.7 bits (103), Expect = 7e-06
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG----NYIFEKLLLRPIVEEASRIR 65
W VFI + + V+ S+ G ++ E L I S+ +
Sbjct: 8 WYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHK 67
Query: 66 LENNEAEFELIKSEQAMW 83
+ L K E
Sbjct: 68 RTDRSILCCLRKGESGQS 85
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 44.4 bits (105), Expect = 1e-05
Identities = 14/74 (18%), Positives = 25/74 (33%), Gaps = 16/74 (21%)
Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL----------------ACLYSNRAAAHLA 281
+K +G++ F+ A+ Y L + N A +
Sbjct: 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100
Query: 282 LNNLHKAVDDASEV 295
+ KA+D AS+V
Sbjct: 101 NKDYPKAIDHASKV 114
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 43.4 bits (103), Expect = 4e-05
Identities = 14/59 (23%), Positives = 23/59 (38%)
Query: 234 NPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDA 292
N D D +F++ NY A+ ++ N +Y+ RA + L A D
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Score = 38.4 bits (90), Expect = 0.001
Identities = 7/63 (11%), Positives = 18/63 (28%), Gaps = 3/63 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
+ + + G + GN+ A+ ++ ++ A+ KA
Sbjct: 102 DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKA 161
Query: 289 VDD 291
Sbjct: 162 DSS 164
Score = 37.3 bits (87), Expect = 0.004
Identities = 7/63 (11%), Positives = 14/63 (22%), Gaps = 3/63 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
G + + G A+ Y + +Y + N A
Sbjct: 68 NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLA 127
Query: 289 VDD 291
+
Sbjct: 128 IQY 130
Score = 32.2 bits (74), Expect = 0.16
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK 287
K G + + Y+ A S++ L+L PN+ Y RA A+ A + K
Sbjct: 136 RPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTK 194
Score = 28.0 bits (63), Expect = 3.4
Identities = 4/66 (6%), Positives = 12/66 (18%), Gaps = 6/66 (9%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSA---YSHGLQLCPNLACLYSNRAAAHLALNNL 285
+ + + Y A Y + + + +
Sbjct: 31 AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD 90
Query: 286 HKAVDD 291
A+
Sbjct: 91 SLAIQQ 96
Score = 27.6 bits (62), Expect = 4.1
Identities = 10/78 (12%), Positives = 18/78 (23%), Gaps = 14/78 (17%)
Query: 232 ENNPDWVKA---KGD---QMFRDGNYLGAVSAYSHGLQLCP--------NLACLYSNRAA 277
E P+ + D A Y +++C L A
Sbjct: 170 ELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY 229
Query: 278 AHLALNNLHKAVDDASEV 295
+ + KA +
Sbjct: 230 YYTINRDKVKADAAWKNI 247
Score = 26.5 bits (59), Expect = 9.5
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 6/61 (9%)
Query: 230 PEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLH 286
+ + ++A + + + A +A+ + L L P + L + H
Sbjct: 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLK---MKLEHHH 269
Query: 287 K 287
Sbjct: 270 H 270
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 43.3 bits (102), Expect = 4e-05
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 15/73 (20%)
Query: 238 VKAKGDQMFRDGNYLGAVSAYSHGLQLCPN---------------LACLYSNRAAAHLAL 282
VK +G F++G Y A+ Y + + N A HL L
Sbjct: 150 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL 209
Query: 283 NNLHKAVDDASEV 295
A++ ++
Sbjct: 210 QAFSAAIESCNKA 222
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 41.3 bits (97), Expect = 6e-05
Identities = 13/81 (16%), Positives = 20/81 (24%), Gaps = 3/81 (3%)
Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC 270
+ EA F N D++ + A Y+ L N
Sbjct: 49 KGRIEEAEVFFRF-LCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105
Query: 271 LYSNRAAAHLALNNLHKAVDD 291
+ L L KA +
Sbjct: 106 PVFHTGQCQLRLKAPLKAKEC 126
Score = 37.5 bits (87), Expect = 0.001
Identities = 10/85 (11%), Positives = 21/85 (24%)
Query: 206 EEEEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC 265
E E +A + + ++ D + + + G A +
Sbjct: 7 ENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD 66
Query: 266 PNLACLYSNRAAAHLALNNLHKAVD 290
AA + +A D
Sbjct: 67 FYNVDYIMGLAAIYQIKEQFQQAAD 91
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 42.3 bits (100), Expect = 8e-05
Identities = 9/85 (10%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 209 EWLQKQAEARQACGFIAADLRPEENNPDWVKA--KGDQMFRDGNYLGAVSAYSHGLQLCP 266
E + +A++ + ++ W + + + L
Sbjct: 155 EQKLDEKQAKEV--LKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAE 212
Query: 267 NLACLYSNRAAAHLALNNLHKAVDD 291
+L+ +L+L +L A
Sbjct: 213 HLSETNFYLGKYYLSLGDLDSATAL 237
Score = 37.3 bits (87), Expect = 0.003
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
PD + G + + GN+ A A+ L+L P + NR A A D
Sbjct: 73 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD 132
Query: 291 D 291
D
Sbjct: 133 D 133
Score = 36.5 bits (85), Expect = 0.006
Identities = 10/85 (11%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Query: 211 LQKQAEARQACG-FIAADLRPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCP 266
LQ + + + + +G G A + +S L + P
Sbjct: 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP 74
Query: 267 NLACLYSNRAAAHLALNNLHKAVDD 291
++ +++ N A +
Sbjct: 75 DMPEVFNYLGIYLTQAGNFDAAYEA 99
Score = 33.1 bits (76), Expect = 0.076
Identities = 4/62 (6%), Positives = 14/62 (22%), Gaps = 3/62 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+ G G+ A + + + + + L +
Sbjct: 211 AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLELSLLGQDQDDLA 270
Query: 291 DA 292
++
Sbjct: 271 ES 272
Score = 27.7 bits (62), Expect = 4.1
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 3/60 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+P + A +G ++ G A Q PN A L+
Sbjct: 107 DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV 166
>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 127
Score = 40.8 bits (95), Expect = 8e-05
Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 12/97 (12%)
Query: 10 WRQTPSKVFITVPLYNV---PTHKVDVFTSESYIKLH-----YGNYIFE-KLLLRPIVEE 60
W Q+ V I + L V PT V V +E L +Y LL+PI E
Sbjct: 25 WDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVE 84
Query: 61 ASRIRLENNEAEFELIK-SEQAMWD--EKKDKRSKEA 94
S +++ + K E WD + +K KE
Sbjct: 85 GSSKKVKTDTVLILCRKKVENTRWDYLTQVEKECKEK 121
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 42.1 bits (99), Expect = 2e-04
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 224 IAADLRPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHL 280
+ + + N W G + Y A+ A + GL L N A +++ A +L
Sbjct: 502 LLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYL 561
Query: 281 ALNNLHKAVDD 291
A+
Sbjct: 562 HKKIPGLAITH 572
Score = 41.4 bits (97), Expect = 3e-04
Identities = 13/85 (15%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC 270
+ E R+A ++++ + E + D + K D +F ++ ++ + L++ P
Sbjct: 282 TSHEDELRRAEDYLSS-INGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD 340
Query: 271 LYSNRAAAHLALNNLHKAVDDASEV 295
+Y A+ +K ++++
Sbjct: 341 VYPLHLASLHESGEKNKLYLISNDL 365
Score = 38.3 bits (89), Expect = 0.002
Identities = 9/59 (15%), Positives = 15/59 (25%), Gaps = 3/59 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
G Q + GN L A L L + +++ A+
Sbjct: 437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAI 495
Score = 36.4 bits (84), Expect = 0.009
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
G + A+SAY+ +L Y H+ L N+ A +
Sbjct: 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY 463
Score = 31.0 bits (70), Expect = 0.46
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 1/64 (1%)
Query: 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
NP+ G+Y A + + AC Y A + L + A++
Sbjct: 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRY-LAAFCLVKLYDWQGALNL 172
Query: 292 ASEV 295
E
Sbjct: 173 LGET 176
Score = 31.0 bits (70), Expect = 0.56
Identities = 9/67 (13%), Positives = 15/67 (22%), Gaps = 2/67 (2%)
Query: 225 AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284
D P A G A +S + P + A +
Sbjct: 365 LVDRHP--EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGE 422
Query: 285 LHKAVDD 291
+A+
Sbjct: 423 HDQAISA 429
Score = 31.0 bits (70), Expect = 0.58
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 9/74 (12%)
Query: 225 AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC-------PNLACLYSNRAA 277
+ L +P + G F + A++ + + L L A ++N
Sbjct: 467 SYALFQ--YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGH 524
Query: 278 AHLALNNLHKAVDD 291
A+ L A+D
Sbjct: 525 AYRKLKMYDAAIDA 538
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 41.4 bits (98), Expect = 2e-04
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
PD F+ + + ++ P LA YSN + L +A
Sbjct: 27 RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEA 86
Query: 289 VDD 291
++
Sbjct: 87 IEH 89
Score = 41.0 bits (97), Expect = 3e-04
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
PD++ + G+ GAV AY LQ P+L C+ S+ AL L +A
Sbjct: 97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156
Query: 291 D 291
Sbjct: 157 C 157
Score = 39.1 bits (92), Expect = 0.001
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P + A + + G+ A Y+ L+LCP A +N A N+ +AV
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326
Query: 291 D 291
Sbjct: 327 L 327
Score = 38.3 bits (90), Expect = 0.002
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P + + GN AV Y L++ P A +SN A+ L +A+
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360
Query: 291 D 291
Sbjct: 361 H 361
Score = 38.3 bits (90), Expect = 0.002
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
+ NP +A G+ G A+ Y H L+L P+ Y N AAA +A ++ A
Sbjct: 61 KQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA 120
Query: 289 VDD 291
V
Sbjct: 121 VQA 123
Score = 37.9 bits (89), Expect = 0.003
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+P+++ A G+ + + AV+AY L L PN A ++ N A + + A+D
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258
Query: 291 D 291
Sbjct: 259 T 259
Score = 37.1 bits (87), Expect = 0.004
Identities = 13/63 (20%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
E P++ A G G A+ + + L PN Y N +A
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222
Query: 289 VDD 291
V
Sbjct: 223 VAA 225
Score = 36.8 bits (86), Expect = 0.007
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
NPD G+ + G A + Y ++ PN A +SN A + A+
Sbjct: 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190
Query: 291 D 291
Sbjct: 191 H 191
Score = 36.0 bits (84), Expect = 0.010
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+P+ + G A+ Y ++L P+ Y N A A ++ +A D
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292
Query: 291 D 291
Sbjct: 293 C 293
Score = 35.6 bits (83), Expect = 0.016
Identities = 5/50 (10%), Positives = 17/50 (34%)
Query: 242 GDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ ++ G++ A + P+ + ++ H L ++
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Score = 32.9 bits (76), Expect = 0.11
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284
P++ A + + G A+ Y +++ P A YSN + +
Sbjct: 335 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 41.1 bits (97), Expect = 2e-04
Identities = 8/68 (11%), Positives = 25/68 (36%)
Query: 228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK 287
+ + N D V + ++ + + ++ S ++ P A + LN ++
Sbjct: 15 VDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANE 74
Query: 288 AVDDASEV 295
+ ++
Sbjct: 75 LFYLSHKL 82
Score = 40.4 bits (95), Expect = 4e-04
Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 3/70 (4%)
Query: 224 IAADLRPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHL 280
+ E W G + Y A+ + L L P A YS H
Sbjct: 222 KIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHS 281
Query: 281 ALNNLHKAVD 290
+ N AVD
Sbjct: 282 LMGNFENAVD 291
Score = 37.3 bits (87), Expect = 0.004
Identities = 7/60 (11%), Positives = 11/60 (18%), Gaps = 3/60 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
G + N A +S L + P + A
Sbjct: 155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK 214
Score = 33.4 bits (77), Expect = 0.063
Identities = 10/59 (16%), Positives = 16/59 (27%), Gaps = 3/59 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
+ A G + + A++AY QL + NN A
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAE 179
Score = 27.6 bits (62), Expect = 4.9
Identities = 6/50 (12%), Positives = 11/50 (22%), Gaps = 8/50 (16%)
Query: 249 GNYL--------GAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
G Y A S L + + + +A+
Sbjct: 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMA 146
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 39.3 bits (92), Expect = 3e-04
Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 3/81 (3%)
Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC 270
K +A++ L + + G G Y A+ +YS+G + N
Sbjct: 31 AGKWDDAQKIFQA-LCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPR 87
Query: 271 LYSNRAAAHLALNNLHKAVDD 291
+ A HL L +L A
Sbjct: 88 FPFHAAECHLQLGDLDGAESG 108
Score = 37.0 bits (86), Expect = 0.002
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 2/67 (2%)
Query: 225 AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284
L + + + A G ++ G + A + L A + A +L
Sbjct: 10 LRGLSED--TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL 67
Query: 285 LHKAVDD 291
+A+
Sbjct: 68 YEQALQS 74
Score = 27.4 bits (61), Expect = 3.0
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 3/79 (3%)
Query: 209 EWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL 268
+ L +A Q+ + A + N P + + + G+ GA S + L
Sbjct: 63 QSLGLYEQALQSYSY-GALMDI--NEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119
Query: 269 ACLYSNRAAAHLALNNLHK 287
+ A A L +
Sbjct: 120 PAHEALAARAGAMLEAVTA 138
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 40.4 bits (94), Expect = 5e-04
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 17/77 (22%)
Query: 236 DWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC-----------------LYSNRAAA 278
D K G+ +F++ A+ Y + + + N AA
Sbjct: 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAAC 239
Query: 279 HLALNNLHKAVDDASEV 295
+ L +A+ + V
Sbjct: 240 LIKLKRYDEAIGHCNIV 256
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 39.8 bits (92), Expect = 8e-04
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 3/80 (3%)
Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC 270
K EA A + P D G+ + + GA+ Y+ +Q+ P A
Sbjct: 56 QGKLQEALMHY-KEAIRISP--TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD 112
Query: 271 LYSNRAAAHLALNNLHKAVD 290
+SN A+ H N+ +A+
Sbjct: 113 AHSNLASIHKDSGNIPEAIA 132
Score = 37.1 bits (85), Expect = 0.007
Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 225 AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284
A ++ P + + G A+ Y +++ P A YSN + +
Sbjct: 35 ALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 92
Query: 285 LHKAVD 290
+ A+
Sbjct: 93 VQGALQ 98
Score = 34.4 bits (78), Expect = 0.045
Identities = 14/58 (24%), Positives = 23/58 (39%)
Query: 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+ D + + GN AV Y L++ P A +SN A+ L +A+
Sbjct: 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64
Score = 31.3 bits (70), Expect = 0.41
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 2/85 (2%)
Query: 212 QKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACL 271
+ + C A + P D GN A+++Y L+L P+
Sbjct: 90 MQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDA 147
Query: 272 YSNRAAAHLALNNLHKAVDDASEVR 296
Y N A + + + ++
Sbjct: 148 YCNLAHCLQIVCDWTDYDERMKKLV 172
Score = 27.9 bits (61), Expect = 5.8
Identities = 9/30 (30%), Positives = 12/30 (40%)
Query: 261 GLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
G CP A +N A N+ +AV
Sbjct: 1 GPGSCPTHADSLNNLANIKREQGNIEEAVR 30
>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative,
center for eukaryotic structural genomics, CESG,
structural genomics; NMR {Arabidopsis thaliana}
Length = 150
Score = 38.0 bits (88), Expect = 9e-04
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG----NYIFEKLLLRPIVEEASRIR 65
W Q KV++TV L + V + G + F L I+ E +
Sbjct: 9 WAQRSDKVYLTVALPDAKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEYRK-N 67
Query: 66 LENNEAEFELIKSEQAMW 83
+ F + K E++ W
Sbjct: 68 VGLRNIIFSIQKEERSWW 85
>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement
protein, structural genomics, joint center for
structural genomics, JCSG; 1.95A {Mus musculus}
Length = 157
Score = 38.1 bits (88), Expect = 9e-04
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 23/137 (16%)
Query: 9 CWRQTPSKVFITVPL-YNVPTHKVDVFTSESYIKLHY-GNYIFEKLLLRPIVEEASRIRL 66
W QT +VFI V + + ++ L G I + L + + L
Sbjct: 17 QWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVGGREILKGKLFDSTIADEGTWTL 76
Query: 67 ENNE---AEFELIKSEQAMW-------DEKKDKRSKEAVSVQMKLET-QEQT---DVSNM 112
E+ + K + A + D ++ + ++ LE Q++ D S
Sbjct: 77 EDRKMVRIVLTKTKRDAANCWTSLLESEYAADPWVQDQMQRKLTLERFQKENPGFDFSGA 136
Query: 113 KERQKWEALSGNYECNG 129
+ +SGNY G
Sbjct: 137 E-------ISGNYTKGG 146
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1
PDB: 1wm5_A 1e96_B*
Length = 213
Score = 38.2 bits (89), Expect = 0.001
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
N A A++ + +LA Y R + A+ D
Sbjct: 51 KNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD 93
Score = 31.2 bits (71), Expect = 0.29
Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+G ++ GA+ A+S + + + N + L N+ +A
Sbjct: 12 EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKA 59
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 38.5 bits (90), Expect = 0.002
Identities = 15/86 (17%), Positives = 29/86 (33%)
Query: 206 EEEEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLC 265
+ E + AA + +PD G G + A+ A++ L +
Sbjct: 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR 243
Query: 266 PNLACLYSNRAAAHLALNNLHKAVDD 291
P L++ A + +AV+
Sbjct: 244 PEDYSLWNRLGATLANGDRSEEAVEA 269
Score = 34.6 bits (80), Expect = 0.032
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
+P +A G + N A+ A L+L PN A ++ ++ A
Sbjct: 93 LQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDA 152
Query: 289 VDD 291
+
Sbjct: 153 CEA 155
Score = 34.3 bits (79), Expect = 0.039
Identities = 12/91 (13%), Positives = 26/91 (28%), Gaps = 6/91 (6%)
Query: 207 EEEWLQKQAEARQACGFIAAD---LRPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSH 260
W+ + EA+ A++ EN +G + ++G+ +
Sbjct: 31 RRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEA 90
Query: 261 GLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ P A + N A+
Sbjct: 91 AILQDPGDAEAWQFLGITQAENENEQAAIVA 121
Score = 32.7 bits (75), Expect = 0.11
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P+ G + AV AY+ L++ P N + + L +AV
Sbjct: 243 RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302
Query: 291 D 291
+
Sbjct: 303 N 303
Score = 29.6 bits (67), Expect = 1.1
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P+ +KA + A A + ++ P L N+ + + K+
Sbjct: 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188
Query: 291 D 291
D
Sbjct: 189 D 189
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 37.8 bits (88), Expect = 0.002
Identities = 11/69 (15%), Positives = 18/69 (26%)
Query: 223 FIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL 282
+ + E + ++ NY A Y LQ PN A +
Sbjct: 42 YWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101
Query: 283 NNLHKAVDD 291
A+
Sbjct: 102 GQEKDALRM 110
Score = 29.3 bits (66), Expect = 0.99
Identities = 9/60 (15%), Positives = 15/60 (25%), Gaps = 3/60 (5%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
+ P+ V + G A+ Y LQL + + K
Sbjct: 82 QKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKK 141
Score = 29.3 bits (66), Expect = 0.99
Identities = 6/60 (10%), Positives = 13/60 (21%), Gaps = 1/60 (1%)
Query: 233 NNPDWVKAKGDQMFRDGN-YLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+N G+ + + L + + L KA +
Sbjct: 120 DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNS 179
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding
DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A
2kq5_A
Length = 499
Score = 38.6 bits (90), Expect = 0.002
Identities = 7/61 (11%), Positives = 14/61 (22%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P+ V A + L P ++ AL + + +
Sbjct: 136 TPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 195
Query: 291 D 291
Sbjct: 196 V 196
Score = 36.7 bits (85), Expect = 0.008
Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P V A G + L P ++ AL + + +
Sbjct: 306 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLP 365
Query: 291 D 291
Sbjct: 366 V 366
Score = 36.7 bits (85), Expect = 0.008
Identities = 7/61 (11%), Positives = 13/61 (21%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P V A + L P ++ AL + + +
Sbjct: 340 TPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLP 399
Query: 291 D 291
Sbjct: 400 V 400
Score = 35.1 bits (81), Expect = 0.023
Identities = 9/84 (10%), Positives = 20/84 (23%), Gaps = 6/84 (7%)
Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPN 267
Q ++ + + P+ V A G + L P
Sbjct: 354 KQALETVQRL---LPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPE 410
Query: 268 LACLYSNRAAAHLALNNLHKAVDD 291
++ AL + + +
Sbjct: 411 QVVAIASHDGGKQALETVQRLLPV 434
Score = 35.1 bits (81), Expect = 0.026
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P+ V A G + L P ++ AL + + +
Sbjct: 170 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 229
Query: 291 D 291
Sbjct: 230 V 230
Score = 34.7 bits (80), Expect = 0.028
Identities = 12/82 (14%), Positives = 19/82 (23%), Gaps = 4/82 (4%)
Query: 213 KQAEARQACGFIAADLRPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLA 269
EA A A P P+ V A + L P
Sbjct: 48 TAVEAVHAWR-NALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQV 106
Query: 270 CLYSNRAAAHLALNNLHKAVDD 291
++ AL + + +
Sbjct: 107 VAIASHDGGKQALETVQRLLPV 128
Score = 34.7 bits (80), Expect = 0.029
Identities = 7/61 (11%), Positives = 12/61 (19%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P V A + L P ++ AL + +
Sbjct: 102 TPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLP 161
Query: 291 D 291
Sbjct: 162 V 162
Score = 34.7 bits (80), Expect = 0.030
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ L P ++ AL ++ +
Sbjct: 426 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSR 468
Score = 34.3 bits (79), Expect = 0.042
Identities = 4/43 (9%), Positives = 10/43 (23%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ L P ++ AL + + +
Sbjct: 290 ETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPV 332
Score = 32.0 bits (73), Expect = 0.22
Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P V A G + L P ++ AL + + +
Sbjct: 204 TPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLP 263
Query: 291 D 291
Sbjct: 264 V 264
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 38.7 bits (90), Expect = 0.002
Identities = 10/80 (12%), Positives = 16/80 (20%), Gaps = 3/80 (3%)
Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC 270
+ A L P +P+ V G + + A P
Sbjct: 36 MGDTTAGEMAVQ-RGLALHP--GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG 92
Query: 271 LYSNRAAAHLALNNLHKAVD 290
+ A A
Sbjct: 93 IALWLGHALEDAGQAEAAAA 112
Score = 37.9 bits (88), Expect = 0.003
Identities = 4/42 (9%), Positives = 11/42 (26%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+ + ++ P + A A L + +
Sbjct: 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEM 44
Score = 36.0 bits (83), Expect = 0.014
Identities = 10/60 (16%), Positives = 13/60 (21%), Gaps = 3/60 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P A D G+ A GL L P + +A
Sbjct: 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAV 78
Score = 29.0 bits (65), Expect = 2.1
Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 2/85 (2%)
Query: 212 QKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACL 271
Q++ A+D P +P G + G A +AY+ QL P +
Sbjct: 70 QQRHAEAAVLLQQASDAAP--EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127
Query: 272 YSNRAAAHLALNNLHKAVDDASEVR 296
+ L + +++VR
Sbjct: 128 TAQLLNWRRRLCDWRALDVLSAQVR 152
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 37.5 bits (88), Expect = 0.002
Identities = 13/69 (18%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 225 AADLRPE--ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLAL 282
++ L P + + G+Y A A++ ++ A Y N A ++
Sbjct: 11 SSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSV 70
Query: 283 NNLHKAVDD 291
N L +A+
Sbjct: 71 NELERALAF 79
Score = 36.0 bits (84), Expect = 0.009
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
N + +A G + +G A+S ++ + P A + N + N KA++
Sbjct: 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214
Query: 291 D 291
Sbjct: 215 M 215
Score = 35.2 bits (82), Expect = 0.014
Identities = 6/61 (9%), Positives = 14/61 (22%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+ G + + A+ ++L N L +A+
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180
Query: 291 D 291
Sbjct: 181 Q 181
Score = 34.0 bits (79), Expect = 0.036
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+ A G+ Y A + L+ L+ + L A+
Sbjct: 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALP 146
Query: 291 D 291
Sbjct: 147 Y 147
Score = 33.6 bits (78), Expect = 0.049
Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 3/63 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
E N + + + A++ Y L+L + A Y ++ +A
Sbjct: 51 EENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEA 110
Query: 289 VDD 291
D
Sbjct: 111 KDM 113
Score = 29.4 bits (67), Expect = 1.1
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK 287
+P A G N A+ + + P+ + L ++ H
Sbjct: 189 DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK---LLGHHHHH 242
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB:
2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 37.3 bits (87), Expect = 0.004
Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 2/87 (2%)
Query: 206 EEEEWLQKQAEARQACGFIAADLRPEENNPDWVKA--KGDQMFRDGNYLGAVSAYSHGLQ 263
E WL + A E D + +G + ++G+ AV + +Q
Sbjct: 33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ 92
Query: 264 LCPNLACLYSNRAAAHLALNNLHKAVD 290
P + A+
Sbjct: 93 QDPKHMEAWQYLGTTQAENEQELLAIS 119
Score = 35.4 bits (82), Expect = 0.017
Identities = 18/66 (27%), Positives = 25/66 (37%)
Query: 225 AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284
A L P +PD G G Y AV ++ L + PN L++ A N
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ 266
Query: 285 LHKAVD 290
+AV
Sbjct: 267 SEEAVA 272
Score = 34.6 bits (80), Expect = 0.032
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
+ +P ++A G + L A+SA L+L P+ A + + +A
Sbjct: 92 QQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQA 151
Query: 289 VDD 291
+
Sbjct: 152 CEI 154
Score = 33.1 bits (76), Expect = 0.11
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P+ G + AV+AY L+L P N + + L +AV+
Sbjct: 247 RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 306
Query: 291 D 291
Sbjct: 307 H 307
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 35.5 bits (82), Expect = 0.005
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 1/60 (1%)
Query: 230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
P + + ++ +G M + N A A+ Q P + + A+
Sbjct: 13 PYMYHENPME-EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAI 71
Score = 34.0 bits (78), Expect = 0.016
Identities = 12/62 (19%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
+ P+ +A G + A+ A +H L P +++ A +H +N + A
Sbjct: 45 QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 104
Query: 289 VD 290
+
Sbjct: 105 LA 106
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 37.0 bits (86), Expect = 0.005
Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 23/94 (24%)
Query: 225 AADLRPEENNPDW-------VKAKGDQMFRDGNYLGAVSAYSHGL--------------- 262
D + + D +K G+ F+ N+ A+ Y+ L
Sbjct: 206 PEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADG 265
Query: 263 -QLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
+L P N A L +++ AVD E
Sbjct: 266 AKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299
Score = 27.4 bits (61), Expect = 5.4
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
++ GAV + L++ P+ RA L +A+ D
Sbjct: 287 SDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD 329
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 36.6 bits (84), Expect = 0.008
Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 15/80 (18%)
Query: 231 EENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC---------------LYSNR 275
+ VK KG F+ G Y+ AV Y + + N
Sbjct: 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNL 323
Query: 276 AAAHLALNNLHKAVDDASEV 295
A +L L KAV+ +
Sbjct: 324 AMCYLKLREYTKAVECCDKA 343
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 33.9 bits (78), Expect = 0.010
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 241 KGDQMFRDGNYLGAVSAYSHGLQLCP-NLACLYSNRAAAHLALNNLHKAVDD 291
++ G+ A+ A LQ P Y A+ L + KA+++
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNN 57
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 35.8 bits (82), Expect = 0.013
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 199 MRESTAPEEEEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAY 258
+R S P +E+ L L N + K G + A
Sbjct: 245 VRHSQHPLDEKQLAALNTEIDN----IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAI 300
Query: 259 SHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ G+ L + Y + +A D
Sbjct: 301 NTGIDLEMSWL-NYVLLGKVYEMKGMNREAADA 332
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 33.5 bits (77), Expect = 0.022
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEV 295
G Y A + ++G++ PN L A L + V+ ++
Sbjct: 41 GEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKI 87
>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.15.1.4
Length = 124
Score = 33.4 bits (76), Expect = 0.023
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 8/84 (9%)
Query: 10 WRQTPSKVFITVPL-YNVPTHK-VDVFTSESYIKLHYGN-----YIFEKLLLRPIVEEAS 62
W Q + + + VP+ +V K V V S S I++ + E L I E+S
Sbjct: 24 WSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESS 83
Query: 63 RIRLENNEA-EFELIKSEQAMWDE 85
LE + L K + W+
Sbjct: 84 LWSLEPGKCVLVNLSKVGEYWWNA 107
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 35.4 bits (81), Expect = 0.023
Identities = 8/88 (9%), Positives = 20/88 (22%), Gaps = 6/88 (6%)
Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPN 267
Q ++ + + P V A + L P+
Sbjct: 609 KQALETVQRL---LPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPD 665
Query: 268 LACLYSNRAAAHLALNNLHKAVDDASEV 295
++ AL + + + +
Sbjct: 666 QVVAIASNGGGKQALETVQRLLPVLCQA 693
Score = 33.1 bits (75), Expect = 0.12
Identities = 12/82 (14%), Positives = 18/82 (21%), Gaps = 4/82 (4%)
Query: 213 KQAEARQACGFIAADLRPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLA 269
EA A A P P V A + L P
Sbjct: 168 TAMEAVHASR-NALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQV 226
Query: 270 CLYSNRAAAHLALNNLHKAVDD 291
++ AL + + +
Sbjct: 227 VAIASHDGGKQALETMQRLLPV 248
Score = 32.7 bits (74), Expect = 0.15
Identities = 7/65 (10%), Positives = 15/65 (23%), Gaps = 3/65 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
P V A + L P+ ++ AL + + +
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLP 281
Query: 291 DASEV 295
+
Sbjct: 282 VLCQA 286
>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein
cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B*
2cr0_A
Length = 121
Score = 33.4 bits (76), Expect = 0.024
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 6/80 (7%)
Query: 10 WRQTPSKVFITVPL-YNVPTHKVDV---FTSES-YIKLHYGNYIFEKLLLRPIVEEASRI 64
W QT S++ + VP N D+ + L I + L + E S
Sbjct: 21 WTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSW 80
Query: 65 RLENNEA-EFELIKSEQAMW 83
+ + L K + W
Sbjct: 81 LIADGAVVTVHLEKINKMEW 100
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 34.6 bits (80), Expect = 0.033
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
NP+ + G NY A + ++L P+ A L++ A N +A+D
Sbjct: 168 NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD 227
Query: 291 D 291
Sbjct: 228 A 228
Score = 34.2 bits (79), Expect = 0.043
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
+ P+ +A G + A+ A +H L P +++ A +H +N + A
Sbjct: 49 QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAA 108
Query: 289 VDD 291
+
Sbjct: 109 LAS 111
Score = 33.8 bits (78), Expect = 0.050
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
PD + G + A+ AY+ L + P + N A ++ ++ A
Sbjct: 202 RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK 261
Query: 291 D 291
Sbjct: 262 Q 262
Score = 33.0 bits (76), Expect = 0.11
Identities = 9/64 (14%), Positives = 17/64 (26%), Gaps = 3/64 (4%)
Query: 231 EENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK 287
N + + +G M + N A A+ Q P + +
Sbjct: 14 ANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGL 73
Query: 288 AVDD 291
A+
Sbjct: 74 AIIA 77
Score = 32.6 bits (75), Expect = 0.12
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 241 KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ Y + L++ PN A L+++ + NN A +
Sbjct: 144 EDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAAN 194
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 33.3 bits (76), Expect = 0.034
Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 225 AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284
++ + + + + ++ G Y A + L + + A A+
Sbjct: 13 LNEISSD--TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ 70
Query: 285 LHKAVDD 291
A+
Sbjct: 71 YDLAIHS 77
Score = 32.6 bits (74), Expect = 0.060
Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 2/66 (3%)
Query: 225 AADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284
L + + G G Y A+ +YS+G + + A L
Sbjct: 47 LCVLDH--YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE 104
Query: 285 LHKAVD 290
L +A
Sbjct: 105 LAEAES 110
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 33.7 bits (78), Expect = 0.043
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ G Q++ G Y A++ + L+ P A L L ++ A+++
Sbjct: 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN 61
Score = 32.1 bits (74), Expect = 0.16
Identities = 10/41 (24%), Positives = 16/41 (39%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
G A++ Y+ L+ P L A+A L +A
Sbjct: 165 GRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA 205
Score = 30.6 bits (70), Expect = 0.43
Identities = 11/53 (20%), Positives = 18/53 (33%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ D+ G A+S ++ P A L+ R + L KA
Sbjct: 88 RQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEAS 140
Score = 29.0 bits (66), Expect = 1.6
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
NP +A + G A+ + P Y + A++AL +
Sbjct: 35 NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDR 93
>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, transport protein; NMR {Mus musculus} SCOP:
b.15.1.4
Length = 131
Score = 33.0 bits (75), Expect = 0.043
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 9 CWRQTPSKVFITVPLYNVP--THKVDV---FTSES-YIKLHYGNYIFEKLLLRPIVEEAS 62
W QT +++ + VP V DV + L + + L + E S
Sbjct: 11 RWTQTLAELDLAVPF-RVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEES 69
Query: 63 RIRLENNEA-EFELIKSEQAMW 83
+E+ + L K + W
Sbjct: 70 SWLIEDGKVVTVHLEKINKMEW 91
>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain,
structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: b.15.1.3
Length = 134
Score = 32.7 bits (74), Expect = 0.048
Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 20/107 (18%)
Query: 10 WRQT-PSKVFITVPLYNVPTHKVDV------------FTSESYIKLHYG-----NYIFEK 51
+ P V + V + + V ++++LH G + ++
Sbjct: 24 SYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQV 83
Query: 52 LLLRPIVEEASRIRLENNEAEFELIKSEQAMWD--EKKDKRSKEAVS 96
L I E + + L K + W E R A
Sbjct: 84 KLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPAARVGGASG 130
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat,
consensus protein, superhelix, de novo protein; 2.30A
{Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 32.7 bits (76), Expect = 0.053
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+P +A G+ ++ G+Y A+ Y L+L P A + N A+ + +A++
Sbjct: 31 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90
Query: 291 D 291
Sbjct: 91 Y 91
Score = 30.0 bits (69), Expect = 0.45
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
G+Y A+ Y L+L P A + N A+ + +A++
Sbjct: 15 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY 57
Score = 28.9 bits (66), Expect = 0.97
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+P +A G+ ++ G+Y A+ Y L+L P A + N A+ + +A++
Sbjct: 65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 124
Query: 291 D 291
Sbjct: 125 Y 125
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 32.0 bits (74), Expect = 0.060
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
+ NP+ +G + GNY ++ + +QL P + + + A L +AVD
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Score = 31.7 bits (73), Expect = 0.089
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 5/67 (7%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPN--LACLYSNRAAAHLALNNLHKA 288
+P+ K KG ++ Y AV Y++ + + + +++ +A A +
Sbjct: 36 DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVE 95
Query: 289 VDDASEV 295
+ A
Sbjct: 96 AEIAEAR 102
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 32.8 bits (76), Expect = 0.072
Identities = 9/63 (14%), Positives = 18/63 (28%), Gaps = 4/63 (6%)
Query: 233 NNPDWVKA----KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
N D + KG + G Y AV + + A++ + +
Sbjct: 2 GNDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRG 61
Query: 289 VDD 291
+
Sbjct: 62 TEL 64
Score = 32.4 bits (75), Expect = 0.097
Identities = 7/61 (11%), Positives = 15/61 (24%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+ V G + G L P+ + + ++ + AV
Sbjct: 38 DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP 97
Query: 291 D 291
Sbjct: 98 L 98
Score = 31.7 bits (73), Expect = 0.19
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
PD VK G + Y AV + P + A L +A+D
Sbjct: 72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131
Query: 291 D 291
Sbjct: 132 S 132
Score = 30.5 bits (70), Expect = 0.39
Identities = 11/61 (18%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
NP G + G + A+ ++ L L PN ++ A ++ + +A+
Sbjct: 106 NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165
Query: 291 D 291
Sbjct: 166 H 166
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.4 bits (73), Expect = 0.093
Identities = 16/116 (13%), Positives = 39/116 (33%), Gaps = 45/116 (38%)
Query: 58 VEEASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKLETQEQTDVSNMKERQK 117
+ +A R+ E E I+ W E++ KR ++ D ++ Q+
Sbjct: 74 IAQADRLT-----QEPESIRK----WREEQRKR-------------LQELDAASKVMEQE 111
Query: 118 WEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRAQLKAEEK 173
W E A +K+++ ++ +++ + A++
Sbjct: 112 WR------------------EKA-----KKDLEEWNQRQSEQVEKNKINNRIADKA 144
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 33.0 bits (75), Expect = 0.098
Identities = 12/81 (14%), Positives = 22/81 (27%)
Query: 208 EEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN 267
+ + + C ++ R E D + A + L+ P
Sbjct: 111 SDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170
Query: 268 LACLYSNRAAAHLALNNLHKA 288
S A A L+N +
Sbjct: 171 NPEFTSGLAIASYRLDNWPPS 191
Score = 29.9 bits (67), Expect = 1.1
Identities = 9/65 (13%), Positives = 20/65 (30%), Gaps = 3/65 (4%)
Query: 233 NNPDWVKAKGDQMFRDGN---YLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
NP++ +R N A+ ++L P+ L A + +
Sbjct: 170 KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEE 229
Query: 290 DDASE 294
+ +
Sbjct: 230 GEGEK 234
Score = 28.7 bits (64), Expect = 2.5
Identities = 8/59 (13%), Positives = 16/59 (27%)
Query: 232 ENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+ + AV+ + NL + S A+ H + +A
Sbjct: 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEY 355
Score = 28.4 bits (63), Expect = 2.8
Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 7/66 (10%)
Query: 232 ENNPDWVKAK-------GDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284
NPD K L+ P + + + A + +
Sbjct: 203 RLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE 262
Query: 285 LHKAVD 290
KA++
Sbjct: 263 PDKAIE 268
Score = 27.2 bits (60), Expect = 7.3
Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 3/51 (5%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAH 279
E P R A+ L+ PN A L+ +
Sbjct: 241 EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCY 291
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 32.7 bits (74), Expect = 0.13
Identities = 7/48 (14%), Positives = 15/48 (31%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDDASEVR 296
+Y A+ +S L P L+ L ++ + +
Sbjct: 272 ESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTK 319
Score = 30.7 bits (69), Expect = 0.50
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLG-AVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHK 287
+ +A KG + +Y A S ++L P L ++ + ++
Sbjct: 96 GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTS 155
Query: 288 AVDD 291
A
Sbjct: 156 AHTC 159
Score = 28.4 bits (63), Expect = 3.3
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNN 284
+ P+ V+A G+ ++ G+ A + +S L C N L N + L
Sbjct: 131 KLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQ-NLSMVLRQLQT 185
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 31.2 bits (72), Expect = 0.14
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+P+ +A G+ ++ G+Y A+ Y L+L PN A + N A+ + +A++
Sbjct: 39 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE 98
Query: 291 D 291
Sbjct: 99 Y 99
Score = 28.9 bits (66), Expect = 0.89
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
G+Y A+ Y L+L PN A + N A+ + +A++
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.40
Identities = 25/150 (16%), Positives = 39/150 (26%), Gaps = 62/150 (41%)
Query: 157 MDKITRRVRAQLKAEEKRAALPLVRSQGLIGVTFTPRVFPTPM-------RE---STAPE 206
MD + R PL S G + V PT +E PE
Sbjct: 1 MDAYSTR--------------PLTLSHGSLEHVLL--V-PTASFFIASQLQEQFNKILPE 43
Query: 207 EEEWLQKQAEARQAC-------GFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYS 259
E E G++++ + P + V +
Sbjct: 44 PTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK----------------------VGQFD 81
Query: 260 HGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
L LC L + +L N++H
Sbjct: 82 QVLNLC--LTEFENC----YLEGNDIHALA 105
Score = 30.4 bits (68), Expect = 0.88
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 29/84 (34%)
Query: 25 NVPTHKVDVFTSES--YIKLHYGNYIFE---------KLLLRPIVEEASRIRLENNE--- 70
N P + F E I+ +Y IFE + + + I E ++ + +
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 71 ---------------AEFELIKSE 79
A FE +KS+
Sbjct: 1727 SATQFTQPALTLMEKAAFEDLKSK 1750
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 29.6 bits (67), Expect = 0.48
Identities = 3/37 (8%), Positives = 6/37 (16%)
Query: 254 AVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
L + L + A+
Sbjct: 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALP 40
Score = 28.8 bits (65), Expect = 0.96
Identities = 6/62 (9%), Positives = 12/62 (19%), Gaps = 3/62 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
D + G + A+ L P + + + A
Sbjct: 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72
Query: 289 VD 290
Sbjct: 73 RQ 74
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 30.3 bits (69), Expect = 0.54
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 232 ENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
+ + A G + GN A L++ P+ A ++ A A
Sbjct: 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLA 90
Query: 289 VD 290
+
Sbjct: 91 DE 92
Score = 28.8 bits (65), Expect = 1.8
Identities = 8/58 (13%), Positives = 15/58 (25%), Gaps = 3/58 (5%)
Query: 234 NPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
N + D ++++ Y+ A Y Q A + A
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA 228
Score = 28.8 bits (65), Expect = 1.8
Identities = 6/42 (14%), Positives = 9/42 (21%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
A + L+L N + A A
Sbjct: 155 KKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ 196
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 29.9 bits (68), Expect = 0.75
Identities = 7/42 (16%), Positives = 11/42 (26%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
G + A + L P + A + L A
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADY 168
Score = 29.2 bits (66), Expect = 1.4
Identities = 10/49 (20%), Positives = 18/49 (36%)
Query: 242 GDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+ R +Y A ++ L+ P + RA + L KA +
Sbjct: 15 AMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQE 63
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 29.8 bits (67), Expect = 0.77
Identities = 14/81 (17%), Positives = 24/81 (29%)
Query: 204 APEEEEWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQ 263
+ Q + +R N + G+ +Y ++ AY LQ
Sbjct: 13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQ 72
Query: 264 LCPNLACLYSNRAAAHLALNN 284
L A LY+ A +
Sbjct: 73 LRGENAELYAALATVLYYQAS 93
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 28.1 bits (64), Expect = 0.85
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
G+Y A+ Y L+L PN A + N A+ + +A++
Sbjct: 23 GDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 28.4 bits (64), Expect = 0.87
Identities = 9/58 (15%), Positives = 22/58 (37%)
Query: 233 NNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+P A + + N A++ + ++ P+ Y + + L+ A+D
Sbjct: 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 29.6 bits (67), Expect = 1.4
Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 242 GDQMFRDGNYLGAVSAYSHGLQLC----PNLACLYSNRAAAHLALNNLHKAVD 290
G+++ G+ V+ + +Q L+ +YS A+ L + +KA+
Sbjct: 55 GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQ 107
Score = 28.0 bits (63), Expect = 4.5
Identities = 7/48 (14%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 249 GNYLGAVSAYSHGLQLC------PNLACLYSNRAAAHLALNNLHKAVD 290
+ A+ ++ L + A + AH A+ +A+
Sbjct: 317 HEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364
Score = 27.3 bits (61), Expect = 6.8
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 249 GNYLGAVSAYSHGLQLC------PNLACLYSNRAAAHLALNNLHKAVD 290
G+Y A+ + H L L A N + +A
Sbjct: 100 GDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147
Score = 26.9 bits (60), Expect = 8.5
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 249 GNYLGAVSAYSHGLQLC------PNLACLYSNRAAAHLALNNLHKAVD 290
G++ A+ + L++ SN +H+ L A +
Sbjct: 237 GDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR,
cell polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 29.2 bits (66), Expect = 1.9
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 242 GDQMFRDGNYLGAVSAYSHGLQLC----PNLACLYSNRAAAHLALNNLHKAVD 290
G+++ + G+ VS + +Q+ L+ +YS A+ L++ KA++
Sbjct: 16 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 68
Score = 27.3 bits (61), Expect = 7.6
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 249 GNYLGAVSAYSHGLQLC------PNLACLYSNRAAAHLALNNLHKAVD 290
+Y A+ + L + + A+ AL N +A+
Sbjct: 281 QDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328
Score = 26.9 bits (60), Expect = 9.7
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 249 GNYLGAVSAYSHGLQLC------PNLACLYSNRAAAHLALNNLHKAVD 290
GN+ AV A+ L + YSN A++ L A +
Sbjct: 201 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR
binding; 2.30A {Mus musculus}
Length = 338
Score = 28.8 bits (65), Expect = 2.4
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 249 GNYLGAVSAYSHGLQLC------PNLACLYSNRAAAHLALNNLHKAVD 290
+Y A+ + L + + A+ AL N +A+
Sbjct: 277 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 324
Score = 28.4 bits (64), Expect = 3.2
Identities = 12/53 (22%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 242 GDQMFRDGNYLGAVSAYSHGLQLC----PNLACLYSNRAAAHLALNNLHKAVD 290
G+++ + G+ VS + +Q+ L+ +YS A+ L++ KA++
Sbjct: 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 64
Score = 27.6 bits (62), Expect = 5.5
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 249 GNYLGAVSAYSHGLQLC------PNLACLYSNRAAAHLALNNLHKAVD 290
GN+ AV A+ L + YSN A++ L A +
Sbjct: 197 GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 244
Score = 27.2 bits (61), Expect = 6.1
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 249 GNYLGAVSAYSHGLQLC------PNLACLYSNRAAAHLALNNLHKAVD 290
G + A Y L L A + + L + KA+D
Sbjct: 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284
Score = 26.8 bits (60), Expect = 8.7
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 6/48 (12%)
Query: 249 GNYLGAVSAYSHGLQLC------PNLACLYSNRAAAHLALNNLHKAVD 290
+Y A+ + H L L A N L N +A+
Sbjct: 57 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV 104
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 27.8 bits (61), Expect = 3.8
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 12/57 (21%)
Query: 64 IRLENNE---AEFELIKSEQAMWDEKK------DKRSKEAVSVQM--KLETQEQTDV 109
I L NE +E + + DE D SK VQ K QEQ DV
Sbjct: 176 IELPPNEILFSENNDMDNNNDGVDELNKKCTFWDAISKL-YYVQFFFKQAEQEQADV 231
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 28.3 bits (63), Expect = 3.9
Identities = 22/128 (17%), Positives = 54/128 (42%), Gaps = 14/128 (10%)
Query: 59 EEASRIRLE----NNEAEFELIKSEQAMWDEKKDKRSKE-------AVSVQMKLETQEQT 107
EEA+R +L+ + + + ++ + + +++ +K +KE + L +E+
Sbjct: 967 EEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK 1026
Query: 108 DVSNMKERQKWEALSGNYECN-GNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKITRRVRA 166
+ K + K E++ E + + K E E + H+ + + + A
Sbjct: 1027 AKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE--LQAQIA 1084
Query: 167 QLKAEEKR 174
+LKA+ +
Sbjct: 1085 ELKAQLAK 1092
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis,
glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia
coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Length = 299
Score = 27.6 bits (62), Expect = 5.0
Identities = 6/32 (18%), Positives = 19/32 (59%)
Query: 143 VSNEKEIQNKHKAMMDKITRRVRAQLKAEEKR 174
+ + E++ + ++DK+ R++ ++A E +
Sbjct: 196 IQRDGEMEESKQQLIDKLLTRIQGVIQARESK 227
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 27.1 bits (61), Expect = 5.1
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 6/48 (12%)
Query: 249 GNYLGAVSAYSHGLQLC------PNLACLYSNRAAAHLALNNLHKAVD 290
+Y A+ + L + + A+ AL N +A+
Sbjct: 103 QDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH 150
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 27.8 bits (61), Expect = 5.1
Identities = 19/134 (14%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 42 LHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAVSVQMKL 101
HY Y KL + + + + +E ++E +KK++ ++ ++K
Sbjct: 293 RHYELYRRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKE 352
Query: 102 ETQEQTDVSNMKERQKWEALSGNYECNGNTRAPCGDEDAPKVSNEKEIQNKHKAMMDKIT 161
+ E + + + +K++ L ++ +K++++K K++ D++
Sbjct: 353 KEAELKE-AEKELHEKFDRLKKLHQ-----------------DEKKKLEDKKKSLDDEVN 394
Query: 162 RRVRAQLKAEEKRA 175
+ + AE ++
Sbjct: 395 AFKQRKTAAELLQS 408
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding,
transcription regulation, transcription regula; HET:
MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Length = 206
Score = 27.0 bits (60), Expect = 5.5
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 157 MDKITRRVRAQLKAEEKR-----AALPLVRSQGLIGVT 189
MD I +R R +L +++ AL + +G+
Sbjct: 2 MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGG 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A
{Bos taurus}
Length = 291
Score = 27.4 bits (60), Expect = 6.3
Identities = 6/81 (7%), Positives = 13/81 (16%)
Query: 210 WLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLA 269
+ + A + + G + A L
Sbjct: 175 LAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234
Query: 270 CLYSNRAAAHLALNNLHKAVD 290
N L + +
Sbjct: 235 ETLINLVVLSQHLGKPPEVTN 255
>1b6g_A Haloalkane dehalogenase; hydrolase, alpha/beta-hydrolase; 1.15A
{Xanthobacter autotrophicus} SCOP: c.69.1.8 PDB: 1be0_A
1cij_A 2yxp_X 1edd_A 1edb_A 2dhc_A 2dhe_A 2eda_A 2edc_A
2had_A 1ede_A 2pky_X 1bez_A 1bee_A 2dhd_A* 1hde_A
Length = 310
Score = 27.0 bits (60), Expect = 7.0
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 13 TPSKVFITVPLYNVPTHKVDVFTSESYIKLHY 44
TP + F + Y + +D ++ HY
Sbjct: 7 TPDQRFSNLDQYPFSPNYLDDLPGYPGLRAHY 38
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 8.0
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 6/90 (6%)
Query: 36 SESYIKLHYGNYIFEKLLLRPIVEEASRIRLENNEAEFELIKSEQAMWDEKKDKRSKEAV 95
+ +K Y I E +R I E + + + E+ + + K + E
Sbjct: 886 DDKDVKAKYETSILEHSGIRLIEPELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAE-- 943
Query: 96 SVQMKLETQEQTDVSNMKERQKW--EALSG 123
Q K + ++ D+ + E ++ + L G
Sbjct: 944 --QFKHQHGDKVDIFEIPETGEYSVKLLKG 971
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.378
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,455,373
Number of extensions: 263003
Number of successful extensions: 953
Number of sequences better than 10.0: 1
Number of HSP's gapped: 920
Number of HSP's successfully gapped: 278
Length of query: 296
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 203
Effective length of database: 4,105,140
Effective search space: 833343420
Effective search space used: 833343420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)