RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5819
(296 letters)
>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19,
USP19 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 54.2 bits (130), Expect = 5e-10
Identities = 15/106 (14%), Positives = 27/106 (25%), Gaps = 19/106 (17%)
Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYGN-----------------YIFEKL 52
+ + P V + V + + V E L + + ++
Sbjct: 25 YEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVK 84
Query: 53 LLRPIVEEASRIRLENNEAEFELIKSEQAMWD--EKKDKRSKEAVS 96
L I E + + L K + W E R A
Sbjct: 85 LRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPAARVGGASG 130
>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog,
gst1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 92
Score = 52.6 bits (126), Expect = 8e-10
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 5/80 (6%)
Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG-----NYIFEKLLLRPIVEEASRI 64
W QT S+V IT+ + NV + V+V SE + +Y + LL PI+ E S
Sbjct: 7 WYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTF 66
Query: 65 RLENNEAEFELIKSEQAMWD 84
++ + + E +L K E W+
Sbjct: 67 KVLSTKIEIKLKKPEAVRWE 86
>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 110
Score = 44.6 bits (105), Expect = 9e-07
Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 4/78 (5%)
Query: 10 WRQTPSKVFITVPLYNVPTHKVDVFTSESYIKLHYG----NYIFEKLLLRPIVEEASRIR 65
W VFI + + V+ S+ G ++ E L I S+ +
Sbjct: 8 WYDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHK 67
Query: 66 LENNEAEFELIKSEQAMW 83
+ L K E
Sbjct: 68 RTDRSILCCLRKGESGQS 85
>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3
(KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 44.2 bits (104), Expect = 2e-06
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 9 CWRQTPSKVFITVPLY--NVPTHKVDVFTSESYIKL-----HYGNYIFEKLLLRPIVEEA 61
W Q + + + VP+ V +V V S S I++ + + E L I E+
Sbjct: 23 TWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTES 82
Query: 62 SRIRLENNEAEFELIKSEQAMW 83
S LE + + W
Sbjct: 83 SLWSLEPGKCVLVNLSKVGEYW 104
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 37.7 bits (86), Expect = 0.001
Identities = 18/81 (22%), Positives = 31/81 (38%)
Query: 211 LQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLAC 270
L+++ +A LR + D + + GN AV Y L++ P A
Sbjct: 281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340
Query: 271 LYSNRAAAHLALNNLHKAVDD 291
+SN A+ L +A+
Sbjct: 341 AHSNLASVLQQQGKLQEALMH 361
Score = 30.8 bits (68), Expect = 0.17
Identities = 11/76 (14%), Positives = 22/76 (28%)
Query: 209 EWLQKQAEARQACGFIAADLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNL 268
++Q +A L + + G A+ Y +++ P
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372
Query: 269 ACLYSNRAAAHLALNN 284
A YSN + +
Sbjct: 373 ADAYSNMGNTLKEMQD 388
Score = 28.5 bits (62), Expect = 0.94
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 228 LRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHL 280
R E +N + F+ + + ++ P LA YSN +
Sbjct: 26 WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 37.5 bits (85), Expect = 0.001
Identities = 9/61 (14%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAV 289
P ++P + +G + ++G+ AV + +Q P + A+
Sbjct: 15 PLRDHPQPFE-EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 73
Query: 290 D 290
Sbjct: 74 S 74
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 37.3 bits (86), Expect = 0.001
Identities = 7/49 (14%), Positives = 15/49 (30%)
Query: 242 GDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVD 290
+G A+ ++ P A L S+ + +A +
Sbjct: 3 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADE 51
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 34.2 bits (77), Expect = 0.009
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 239 KAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAH 279
K +G+++F Y A + Y + P +A Y+NRA +
Sbjct: 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCY 48
Score = 26.8 bits (58), Expect = 2.9
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 3/63 (4%)
Query: 229 RPEENNPDWVKA---KGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNL 285
R E + VKA G +Y A++ L + + + L +
Sbjct: 63 RALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122
Query: 286 HKA 288
+
Sbjct: 123 KRW 125
>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 131
Score = 33.0 bits (75), Expect = 0.016
Identities = 14/80 (17%), Positives = 31/80 (38%), Gaps = 6/80 (7%)
Query: 10 WRQTPSKVFITVPL---YNVPTHKVDVFTSESYIKLHYGN--YIFEKLLLRPIVEEASRI 64
W QT +++ + VP + + V V ++++ + + L + E S
Sbjct: 12 WTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSW 71
Query: 65 RLENNE-AEFELIKSEQAMW 83
+E+ + L K + W
Sbjct: 72 LIEDGKVVTVHLEKINKMEW 91
>d1b6ga_ c.69.1.8 (A:) Haloalkane dehalogenase {Xanthobacter
autotrophicus [TaxId: 280]}
Length = 310
Score = 28.0 bits (60), Expect = 1.4
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 12 QTPSKVFITVPLYNVPTHKVDVFTSESYIKLHY 44
+TP + F + Y + +D ++ HY
Sbjct: 6 RTPDQRFSNLDQYPFSPNYLDDLPGYPGLRAHY 38
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III
{Escherichia coli [TaxId: 562]}
Length = 366
Score = 27.2 bits (58), Expect = 2.4
Identities = 10/70 (14%), Positives = 20/70 (28%), Gaps = 5/70 (7%)
Query: 227 DLRPEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPN-----LACLYSNRAAAHLA 281
D+R + + ++ + DGN A L+ P S
Sbjct: 4 DIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC 63
Query: 282 LNNLHKAVDD 291
L +++
Sbjct: 64 KGELTRSLAL 73
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 27.1 bits (59), Expect = 2.8
Identities = 4/43 (9%), Positives = 7/43 (16%)
Query: 249 GNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKAVDD 291
G Y + + S + V
Sbjct: 100 GFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKP 142
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey
(Saimiri boliviensis) [TaxId: 27679]}
Length = 168
Score = 26.5 bits (57), Expect = 3.0
Identities = 5/59 (8%), Positives = 15/59 (25%)
Query: 230 PEENNPDWVKAKGDQMFRDGNYLGAVSAYSHGLQLCPNLACLYSNRAAAHLALNNLHKA 288
+ N + +G+ + A + L++ P ++
Sbjct: 93 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNER 151
>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 95
Score = 24.3 bits (53), Expect = 7.5
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 240 AKGDQMFRDGNYLGAVSAYSHGLQLCPN 267
G+++ G+Y V ++ + +C
Sbjct: 25 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.129 0.378
Gapped
Lambda K H
0.267 0.0545 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,076,630
Number of extensions: 48518
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 27
Length of query: 296
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,240,546
Effective search space: 261755206
Effective search space used: 261755206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.6 bits)