BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5823
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With
A H3k4me3 Peptide
Length = 75
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 38/54 (70%), Gaps = 2/54 (3%)
Query: 287 SKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 339
Q+WICP C DDGS PMIGCD CD WYHW CVG++A PE WFCPKC+
Sbjct: 15 GNQIWICPGCNKPDDGS-PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 67
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 306 MIGCDGCDA---WYHWVCVGLVAEPETSDWFCPKCSK 339
MIGCD D W+H+ CVGL +P WFCP+CS+
Sbjct: 49 MIGCDNPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQ 84
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 306 MIGCDGCDA---WYHWVCVGLVAEPETSDWFCPKCSK 339
MIGCD D W+H+ CVGL +P WFCP+CS+
Sbjct: 23 MIGCDNPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQ 58
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 296 CGVQDDGSLPMIGCDGCDAWYHWVCVGLV-AEPETSD-WFCPKCSKVDEG 343
C +D S IGCD C WYH CVG++ +E E D + CP+C ++
Sbjct: 13 CKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDA 62
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 306 MIGCDGCDA---WYHWVCVGLVAEPETSDWFCPKCSK 339
MIGCD D W+H+ CVGL +P WFCP+CS+
Sbjct: 29 MIGCDNPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQ 64
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 306 MIGCDGCDA---WYHWVCVGLVAEPETSDWFCPKCSK 339
MIGCD D W+H+ CVGL +P WFCP+CS+
Sbjct: 23 MIGCDNPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQ 58
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
Length = 55
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 306 MIGCDGCDA---WYHWVCVGLVAEPETSDWFCPKCSK 339
MIGCD D W+H+ CVGL +P WFCP+CS+
Sbjct: 18 MIGCDNPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQ 53
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 306 MIGCDGCDA---WYHWVCVGLVAEPETSDWFCPKCSK 339
MIGCD D W+H+ CVGL +P WFCP+CS+
Sbjct: 23 MIGCDDPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQ 58
>pdb|3N9L|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide And
Nog
pdb|3N9M|A Chain A, Cekdm7a From C.Elegans, Alone
pdb|3N9M|C Chain C, Cekdm7a From C.Elegans, Alone
pdb|3N9N|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide
And Nog
pdb|3N9O|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k9me2 Peptide And Nog
pdb|3N9P|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide
And Nog
pdb|3N9Q|A Chain A, Cekdm7a From C.Elegans, Complex With H3k4me3 Peptide,
H3k27me2 Peptide And Nog
pdb|3PUQ|A Chain A, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUQ|C Chain C, Cekdm7a From C.Elegans, Complex With Alpha-Kg
pdb|3PUR|A Chain A, Cekdm7a From C.Elegans, Complex With D-2-Hg
pdb|3PUR|C Chain C, Cekdm7a From C.Elegans, Complex With D-2-Hg
Length = 528
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 307 IGCDGCDAWYHWVCVGL--VAEPETSDWFCPKC 337
IGCD C WYH++C GL +FCPKC
Sbjct: 59 IGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKC 91
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 296 CGVQDDGSLPMIGCDGCDAWYHWVCVGLV-AEPETSD-WFCPKCSKVDEG 343
C D S IGCD C WYH CVG++ +E E D + CP+C ++
Sbjct: 13 CKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDA 62
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 296 CGVQDDGSLPMIGCDGCDAWYHWVCVGLV-AEPETSD-WFCPKCSKVDEG 343
C D S IGCD C WYH CVG++ +E E D + CP+C ++
Sbjct: 13 CKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDA 62
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family
Protein
Length = 72
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 296 CGVQDDGSLPMIGCDGCDAWYHWVCVGL-VAEPETSDWFCPKC 337
CG +DD M+ CDGC W+H C+G+ A+ S + C +C
Sbjct: 21 CGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRC 63
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 306 MIGCDGCDA---WYHWVCVGLVAEPETSDWFCPKCSKV 340
M+GCD D W+H+ CVGL P+ W+CP+C+
Sbjct: 19 MVGCDNQDCPIEWFHYGCVGLTEAPK-GKWYCPQCTAA 55
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human
Bptf In Free State
pdb|2FUU|A Chain A, Nmr Solution Structure Of The Phd Domain From The Human
Bptf In Complex With H3(1-15)k4me3 Peptide
Length = 62
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 301 DGSLPMIGCDGCDAWYHWVCVGLV-AEPETSD-WFCPKCSKVDEG 343
D S IGCD C WYH CVG++ +E E D + CP+C ++
Sbjct: 18 DESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDA 62
>pdb|2QIC|A Chain A, Crystal Structure Of The Ing1 Phd Finger In Complex With A
Histone H3k4me3 Peptide
Length = 62
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 4/40 (10%)
Query: 306 MIGCDGCDA---WYHWVCVGLVAEPETSDWFCPKCSKVDE 342
MIGCD + W+H+ CVGL +P+ W+CPKC +E
Sbjct: 24 MIGCDNDECPIEWFHFSCVGLNHKPK-GKWYCPKCRGENE 62
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
Query: 306 MIGCDGCDA---WYHWVCVGLVAEPETSDWFCPKC 337
MIGCD D W+H+ CV L +P+ WFCP+C
Sbjct: 22 MIGCDNPDCPIEWFHFACVDLTTKPK-GKWFCPRC 55
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 35.0 bits (79), Expect = 0.083, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
Query: 306 MIGCDGCDAWYHWVCVGL------VAEPETSDWFCPKCS 338
MI CD C+ W+H CVG+ + E D+ CP C+
Sbjct: 30 MICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCT 68
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With
H3k4me3 Peptide
Length = 75
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 295 ACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGS 344
C + D + MI CD C W+H CVG+ E P+ + CP C K S
Sbjct: 14 VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKS 65
>pdb|4GY5|A Chain A, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|B Chain B, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|C Chain C, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
pdb|4GY5|D Chain D, Crystal Structure Of The Tandem Tudor Domain And Plant
Homeodomain Of Uhrf1 With Histone H3k9me3
Length = 241
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 289 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKC 337
+V C CG + D ++ CD CD +H C+ L + P +W+CP+C
Sbjct: 189 RVCACHLCGGRQDPDKQLM-CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 238
>pdb|3ASK|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|B Chain B, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|C Chain C, Structure Of Uhrf1 In Complex With Histone Tail
pdb|3ASK|D Chain D, Structure Of Uhrf1 In Complex With Histone Tail
Length = 226
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 289 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKC 337
+V C CG + D ++ CD CD +H C+ L + P +W+CP+C
Sbjct: 173 RVCACHLCGGRQDPDKQLM-CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 222
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
Query: 296 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSD---WFCPKC 337
C + D + MI CD C W+H CVG V E + +D + CP C
Sbjct: 10 CRLPYDVTRFMIECDMCQDWFHGSCVG-VEEEKAADIDLYHCPNC 53
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With
H3k4me3 Peptide
Length = 62
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
Query: 306 MIGCDGCDA---WYHWVCVGLVAEPETSDWFCPKCSKVDE 342
MIGCD W+H+ CV L +P+ W+CPKC +E
Sbjct: 24 MIGCDNEQCPIEWFHFSCVSLTYKPK-GKWYCPKCRGDNE 62
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 4/35 (11%)
Query: 306 MIGCDGCDA---WYHWVCVGLVAEPETSDWFCPKC 337
MIGCD W+H+ CV L +P+ W+CPKC
Sbjct: 29 MIGCDNEQCPIEWFHFSCVSLTYKPK-GKWYCPKC 62
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast
Yng1 Protein In Free State
pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast
Yng1 Protein In Complex With H3(1-9)k4me3 Peptide
Length = 90
Score = 32.0 bits (71), Expect = 0.77, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 305 PMIGCD--GCD-AWYHWVCVGLVAEPETSDWFCPKCSK 339
PM+ CD C W+H+ CVGL P+ W+C K K
Sbjct: 38 PMVACDNPACPFEWFHYGCVGLKQAPK-GKWYCSKDCK 74
>pdb|2KGG|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger
pdb|2KGI|A Chain A, Solution Structure Of Jarid1a C-Terminal Phd Finger In
Complex With H3(1-9)k4me3
pdb|3GL6|A Chain A, Crystal Structure Of Jarid1a-Phd3 Complexed With H3(1-9)
K4me3 Peptide
Length = 52
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 304 LPMIGCDG-CDAWYHWVCVGLVAE-PETSDWFCPKCS 338
+ + CDG CD W+H VCVG+ E E D+ C C+
Sbjct: 16 VDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In
Complex With Alpha-Ketoglutarate
Length = 488
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 306 MIGCDGCDAWYHWVCVGLVAEPETSD---WFCPKCSKVDEGS 344
MI CD C W+H CVG V E D + CP C+ + S
Sbjct: 52 MIECDICKDWFHGSCVG-VEEHHAVDIDLYHCPNCAVLHGSS 92
>pdb|3ZVY|A Chain A, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
pdb|3ZVY|B Chain B, Phd Finger Of Human Uhrf1 In Complex With Unmodified
Histone H3 N-Terminal Tail
Length = 72
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 289 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKC 337
+V C CG + D ++ CD CD +H C+ L + P +W+CP+C
Sbjct: 19 RVCACHLCGGRQDPDKQLM-CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 68
>pdb|3SHB|A Chain A, Crystal Structure Of Phd Domain Of Uhrf1
Length = 77
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 289 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKC 337
+V C CG + D ++ CD CD +H C+ L + P +W+CP+C
Sbjct: 25 RVCACHLCGGRQDPDKQLM-CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 74
>pdb|2E6R|A Chain A, Solution Structure Of The Phd Domain In Smcy Protein
Length = 92
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPET--SDWFCPKC 337
+IC C D+ ++ CDGCD YH C+ L PE W CPKC
Sbjct: 17 YICQVCSRGDEDD-KLLFCDGCDDNYHIFCL-LPPLPEIPRGIWRCPKC 63
>pdb|2LGG|A Chain A, Structure Of Phd Domain Of Uhrf1 In Complex With H3
Peptide
pdb|2LGK|A Chain A, Nmr Structure Of Uhrf1 Phd Domains In A Complex With
Histone H3 Peptide
pdb|2LGL|A Chain A, Nmr Structure Of The Uhrf1 Phd Domain
Length = 69
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 289 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKC 337
+V C CG + D ++ CD CD +H C+ L + P +W+CP+C
Sbjct: 17 RVCACHLCGGRQDPDKQLM-CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3SOU|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOU|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone H3
1-9 Peptide
pdb|3SOW|A Chain A, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOW|B Chain B, Structure Of Uhrf1 Phd Finger In Complex With Histone
H3k4me3 1-9 Peptide
pdb|3SOX|A Chain A, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3SOX|B Chain B, Structure Of Uhrf1 Phd Finger In The Free Form
pdb|3ASL|A Chain A, Structure Of Uhrf1 In Complex With Histone Tail
Length = 70
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 289 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKC 337
+V C CG + D ++ CD CD +H C+ L + P +W+CP+C
Sbjct: 17 RVCACHLCGGRQDPDKQLM-CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 66
>pdb|3ZVZ|B Chain B, Phd Finger Of Human Uhrf1
Length = 57
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 289 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKC 337
+V C CG + D ++ CD CD +H C+ L + P +W+CP+C
Sbjct: 4 RVCACHLCGGRQDPDKQLM-CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 53
>pdb|3T6R|A Chain A, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
pdb|3T6R|B Chain B, Structure Of Uhrf1 In Complex With Unmodified H3
N-Terminal Tail
Length = 72
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 289 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKC 337
+V C CG + D ++ CD CD +H C+ L + P +W+CP+C
Sbjct: 22 RVCACHLCGGRQDPDKQLM-CDECDMAFHIYCLDPPLSSVPSEDEWYCPEC 71
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 30.4 bits (67), Expect = 2.2, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 306 MIGCDGCDAWYHWVCVGLVAEP--ETSDWFCPKCSKV 340
MI C C W+H CVG+ E + + CP C V
Sbjct: 27 MIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV 63
>pdb|2E6S|A Chain A, Solution Structure Of The Phd Domain In Ring Finger
Protein 107
Length = 77
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 293 CPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKC 337
C CG + + ++ ++ CD C+ YH C+ L PE W+CP C
Sbjct: 29 CRVCGGKHEPNMQLL-CDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74
>pdb|1WE9|A Chain A, Solution Structure Of Phd Domain In Nucleic Acid Binding
Protein-like Np_197993
Length = 64
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 293 CPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVA--EPETSDWFCPKCS 338
C ACG I CD C+ W+H CV + + CP CS
Sbjct: 9 CGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCS 56
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 296 CG-VQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 337
CG DDG MI CD C W H C+G+ + + C +C
Sbjct: 33 CGFTHDDGY--MICCDKCSVWQHIDCMGIDRQHIPDTYLCERC 73
>pdb|2XB1|A Chain A, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
pdb|2XB1|C Chain C, Crystal Structure Of The Human Pygo2 Phd Finger In Complex
With The B9l Hd1 Domain
Length = 105
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 8/61 (13%)
Query: 290 VWICPACGVQDDGSLPMIGCDG-CDAWYHWVCVG-------LVAEPETSDWFCPKCSKVD 341
V+ C AC + + I C+ C W+H C G L+ ++ W C C K
Sbjct: 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62
Query: 342 E 342
E
Sbjct: 63 E 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,337,191
Number of Sequences: 62578
Number of extensions: 266986
Number of successful extensions: 504
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 458
Number of HSP's gapped (non-prelim): 56
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)