Query psy5823
Match_columns 444
No_of_seqs 300 out of 1296
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 18:52:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5823.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5823hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10203 Pet191_N: Cytochrome 99.9 6.3E-25 1.4E-29 176.0 4.7 64 378-441 2-68 (68)
2 KOG4114|consensus 99.9 5.8E-25 1.3E-29 174.6 3.2 67 378-444 2-72 (73)
3 KOG1973|consensus 99.1 7.5E-11 1.6E-15 117.2 3.1 54 284-341 213-269 (274)
4 PF00628 PHD: PHD-finger; Int 98.9 1.8E-10 3.9E-15 86.0 -0.3 46 292-338 1-49 (51)
5 COG5034 TNG2 Chromatin remodel 98.8 2.2E-09 4.9E-14 105.1 4.8 48 287-338 218-268 (271)
6 smart00249 PHD PHD zinc finger 98.8 7.1E-09 1.5E-13 74.0 4.0 45 292-337 1-47 (47)
7 KOG0825|consensus 98.3 1.9E-07 4E-12 102.7 2.1 53 288-341 213-267 (1134)
8 KOG1244|consensus 98.0 2.3E-06 4.9E-11 85.1 1.7 48 291-339 282-330 (336)
9 KOG4323|consensus 97.8 8E-06 1.7E-10 86.6 2.1 49 290-340 171-224 (464)
10 KOG1844|consensus 97.7 7.3E-05 1.6E-09 79.5 6.6 59 288-348 84-143 (508)
11 KOG4299|consensus 97.7 1.7E-05 3.6E-10 86.2 1.7 48 291-339 254-304 (613)
12 KOG1512|consensus 97.6 2.7E-05 5.9E-10 78.1 2.0 47 292-340 316-363 (381)
13 KOG1245|consensus 97.0 0.00014 3E-09 86.3 -0.9 51 291-342 1109-1160(1404)
14 KOG0383|consensus 96.8 0.00055 1.2E-08 76.2 1.9 50 289-342 46-96 (696)
15 KOG4364|consensus 96.7 0.036 7.8E-07 61.4 14.5 18 384-401 610-627 (811)
16 PF13831 PHD_2: PHD-finger; PD 96.7 0.00031 6.6E-09 50.1 -0.8 34 305-338 3-36 (36)
17 KOG1632|consensus 96.7 0.00065 1.4E-08 70.2 1.2 50 291-341 61-114 (345)
18 KOG0955|consensus 96.7 0.0014 3.1E-08 75.8 4.0 52 289-342 218-271 (1051)
19 KOG0954|consensus 96.3 0.0016 3.4E-08 72.3 1.7 49 290-340 271-321 (893)
20 KOG0957|consensus 96.3 0.0017 3.7E-08 69.5 1.5 48 290-338 544-596 (707)
21 KOG4364|consensus 96.1 0.068 1.5E-06 59.3 12.4 7 331-337 557-563 (811)
22 KOG0957|consensus 96.0 0.0049 1.1E-07 66.1 3.4 49 291-340 120-179 (707)
23 PF07227 DUF1423: Protein of u 95.7 0.0079 1.7E-07 63.9 3.1 52 290-341 128-193 (446)
24 cd04718 BAH_plant_2 BAH, or Br 95.5 0.0085 1.8E-07 55.4 2.3 29 315-343 1-30 (148)
25 KOG1632|consensus 95.0 0.0025 5.4E-08 66.0 -2.9 54 288-341 237-296 (345)
26 KOG4443|consensus 94.8 0.015 3.2E-07 64.3 1.9 48 291-339 69-117 (694)
27 COG5141 PHD zinc finger-contai 94.4 0.017 3.7E-07 62.1 1.2 48 291-340 194-243 (669)
28 KOG0956|consensus 92.5 0.054 1.2E-06 60.3 1.4 47 293-340 8-57 (900)
29 KOG1144|consensus 91.8 0.39 8.5E-06 54.5 6.9 7 405-411 491-497 (1064)
30 PF15446 zf-PHD-like: PHD/FYVE 89.6 0.23 5E-06 47.0 2.3 48 292-340 1-60 (175)
31 PF07649 C1_3: C1-like domain; 87.8 0.21 4.7E-06 33.7 0.6 29 292-321 2-30 (30)
32 KOG1029|consensus 87.0 17 0.00038 41.9 14.9 39 186-224 384-422 (1118)
33 PF07496 zf-CW: CW-type Zinc F 86.9 0.28 6.1E-06 37.2 0.9 32 305-337 2-35 (50)
34 KOG4443|consensus 86.5 0.14 3E-06 56.9 -1.4 49 290-338 145-200 (694)
35 KOG0163|consensus 85.6 9.6 0.00021 43.9 12.0 21 89-109 864-884 (1259)
36 KOG1473|consensus 82.4 0.77 1.7E-05 54.0 2.1 44 291-338 345-389 (1414)
37 PF14446 Prok-RING_1: Prokaryo 82.2 0.9 2E-05 35.5 1.8 33 290-323 5-38 (54)
38 KOG2752|consensus 81.7 0.68 1.5E-05 47.7 1.3 32 289-321 127-164 (345)
39 PF13832 zf-HC5HC2H_2: PHD-zin 79.9 0.93 2E-05 38.8 1.4 32 289-323 54-87 (110)
40 PF13901 DUF4206: Domain of un 79.1 1.7 3.7E-05 41.8 3.0 40 291-339 153-197 (202)
41 PF13639 zf-RING_2: Ring finge 75.6 0.28 6.1E-06 35.4 -2.6 43 292-338 2-44 (44)
42 KOG2626|consensus 74.9 3.6 7.8E-05 45.1 4.3 50 291-341 21-77 (544)
43 PF11793 FANCL_C: FANCL C-term 74.2 3 6.5E-05 33.6 2.7 49 292-340 4-64 (70)
44 KOG4299|consensus 71.8 3.2 6.9E-05 46.2 3.1 51 285-339 42-94 (613)
45 KOG1512|consensus 71.2 1.3 2.8E-05 45.4 -0.1 35 305-339 278-316 (381)
46 KOG1144|consensus 69.6 22 0.00047 41.2 8.9 10 386-395 489-498 (1064)
47 KOG1029|consensus 66.6 77 0.0017 37.0 12.3 8 178-185 400-407 (1118)
48 PF10367 Vps39_2: Vacuolar sor 65.6 3.9 8.4E-05 34.0 1.7 29 292-322 80-108 (109)
49 KOG1952|consensus 65.2 3.2 6.8E-05 47.8 1.4 53 289-341 190-246 (950)
50 KOG1246|consensus 64.4 12 0.00027 43.5 6.1 51 289-341 154-205 (904)
51 PF13771 zf-HC5HC2H: PHD-like 64.0 3.8 8.1E-05 33.6 1.3 32 290-324 36-69 (90)
52 KOG3054|consensus 64.0 45 0.00098 33.8 9.0 33 198-230 149-181 (299)
53 PF12861 zf-Apc11: Anaphase-pr 57.9 5 0.00011 34.1 1.1 46 293-340 35-80 (85)
54 PF03107 C1_2: C1 domain; Int 56.1 10 0.00022 25.7 2.2 29 292-321 2-30 (30)
55 PF13922 PHD_3: PHD domain of 55.4 4.1 8.9E-05 33.2 0.1 28 291-324 34-61 (69)
56 PRK09510 tolA cell envelope in 53.8 3.1E+02 0.0068 29.5 14.1 11 89-99 61-71 (387)
57 PF04216 FdhE: Protein involve 52.0 5.7 0.00012 39.9 0.6 41 290-341 172-221 (290)
58 PF05262 Borrelia_P83: Borreli 51.8 2E+02 0.0042 31.9 12.1 12 40-51 151-162 (489)
59 KOG0163|consensus 51.0 1.5E+02 0.0032 34.8 11.2 10 385-394 1200-1209(1259)
60 KOG1829|consensus 51.0 4.9 0.00011 44.7 -0.1 43 290-338 511-557 (580)
61 KOG3612|consensus 49.0 20 0.00044 39.7 4.1 49 287-339 57-107 (588)
62 PF13341 RAG2_PHD: RAG2 PHD do 49.0 7.2 0.00016 32.3 0.6 33 305-337 29-68 (78)
63 KOG3277|consensus 48.6 8.7 0.00019 36.2 1.1 28 290-318 79-115 (165)
64 PF00130 C1_1: Phorbol esters/ 48.4 18 0.00038 26.8 2.6 35 290-324 11-46 (53)
65 KOG1705|consensus 48.4 7.7 0.00017 33.7 0.7 50 292-341 29-79 (110)
66 KOG3054|consensus 46.3 63 0.0014 32.8 6.7 11 313-323 233-243 (299)
67 PF12678 zf-rbx1: RING-H2 zinc 45.7 8.5 0.00018 31.2 0.5 44 292-338 21-73 (73)
68 KOG1473|consensus 45.1 3.2 7E-05 49.1 -2.7 53 291-347 429-486 (1414)
69 PF05180 zf-DNL: DNL zinc fing 44.1 6.1 0.00013 32.1 -0.5 26 291-316 5-39 (66)
70 PRK03564 formate dehydrogenase 43.9 17 0.00038 37.5 2.6 38 290-338 187-233 (309)
71 KOG1671|consensus 43.0 20 0.00043 35.1 2.6 50 316-371 154-204 (210)
72 TIGR02794 tolA_full TolA prote 41.1 4.5E+02 0.0098 27.6 14.1 13 90-102 50-62 (346)
73 TIGR01562 FdhE formate dehydro 41.0 21 0.00045 36.9 2.6 38 290-338 184-231 (305)
74 KOG3779|consensus 40.5 45 0.00097 36.6 5.0 54 28-81 470-530 (737)
75 KOG4628|consensus 39.4 20 0.00044 37.7 2.2 47 291-340 230-276 (348)
76 smart00109 C1 Protein kinase C 39.2 13 0.00028 26.4 0.6 34 290-323 11-44 (49)
77 COG1773 Rubredoxin [Energy pro 38.9 25 0.00053 27.8 2.1 41 291-339 4-44 (55)
78 KOG2041|consensus 38.5 26 0.00057 40.3 3.1 48 290-340 1117-1165(1189)
79 cd00029 C1 Protein kinase C co 36.9 19 0.00041 25.9 1.2 34 290-323 11-45 (50)
80 PF11781 RRN7: RNA polymerase 36.6 19 0.00041 25.8 1.1 11 328-338 22-32 (36)
81 PF12773 DZR: Double zinc ribb 36.0 33 0.00071 25.2 2.4 8 292-299 14-21 (50)
82 KOG0132|consensus 36.0 86 0.0019 36.4 6.5 38 32-69 614-655 (894)
83 PF08746 zf-RING-like: RING-li 35.8 17 0.00037 26.8 0.8 41 293-337 1-43 (43)
84 TIGR00311 aIF-2beta translatio 35.5 26 0.00056 32.0 2.0 27 289-315 96-127 (133)
85 COG5415 Predicted integral mem 34.5 22 0.00048 35.2 1.5 35 305-342 191-225 (251)
86 PF10497 zf-4CXXC_R1: Zinc-fin 33.7 29 0.00064 30.3 2.0 47 291-339 8-69 (105)
87 PF00301 Rubredoxin: Rubredoxi 33.6 29 0.00063 26.3 1.7 14 327-340 30-43 (47)
88 KOG1984|consensus 33.5 89 0.0019 36.8 6.2 55 18-74 155-219 (1007)
89 PRK14559 putative protein seri 33.5 34 0.00074 38.8 3.0 49 292-342 3-52 (645)
90 PF14569 zf-UDP: Zinc-binding 33.4 9.5 0.00021 32.1 -1.0 48 291-341 10-61 (80)
91 PRK03988 translation initiatio 33.1 30 0.00064 31.8 2.1 28 289-316 101-133 (138)
92 KOG0742|consensus 32.9 7.3E+02 0.016 27.7 14.9 18 20-37 29-46 (630)
93 cd00162 RING RING-finger (Real 32.6 14 0.0003 25.0 -0.1 42 293-339 2-43 (45)
94 KOG1244|consensus 31.9 15 0.00032 37.7 -0.1 49 289-338 223-282 (336)
95 PLN02400 cellulose synthase 31.8 34 0.00073 41.0 2.7 48 291-341 37-88 (1085)
96 KOG3477|consensus 31.6 39 0.00084 29.2 2.3 37 379-430 28-64 (97)
97 smart00744 RINGv The RING-vari 31.5 17 0.00036 27.4 0.1 46 292-338 1-49 (49)
98 PHA02862 5L protein; Provision 30.8 15 0.00033 34.4 -0.2 54 292-346 4-57 (156)
99 PF08274 PhnA_Zn_Ribbon: PhnA 30.8 24 0.00053 24.4 0.8 20 292-313 4-26 (30)
100 PF09416 UPF1_Zn_bind: RNA hel 30.4 26 0.00056 32.9 1.2 27 292-320 2-28 (152)
101 cd00350 rubredoxin_like Rubred 29.8 34 0.00073 23.7 1.4 10 330-339 16-25 (33)
102 COG5180 PBP1 Protein interacti 29.6 58 0.0012 35.9 3.8 19 31-50 547-566 (654)
103 PLN02436 cellulose synthase A 29.0 36 0.00077 40.7 2.3 48 291-341 37-88 (1094)
104 KOG3799|consensus 28.7 23 0.00049 32.9 0.5 51 292-342 67-118 (169)
105 KOG2412|consensus 28.5 2.2E+02 0.0047 32.0 7.9 7 95-101 148-154 (591)
106 smart00653 eIF2B_5 domain pres 27.8 40 0.00087 29.8 1.9 26 289-314 79-109 (110)
107 PLN02638 cellulose synthase A 27.3 36 0.00079 40.7 2.0 47 292-341 19-69 (1079)
108 PF12316 Dsh_C: Segment polari 27.0 21 0.00046 34.9 0.0 45 25-70 146-190 (203)
109 COG4499 Predicted membrane pro 25.8 1E+02 0.0022 33.2 4.7 22 126-147 355-376 (434)
110 COG2835 Uncharacterized conser 25.7 54 0.0012 26.3 2.1 29 289-317 7-37 (60)
111 PRK12336 translation initiatio 25.5 46 0.00099 32.2 2.0 28 289-316 97-129 (201)
112 PLN02189 cellulose synthase 24.8 47 0.001 39.7 2.2 48 291-341 35-86 (1040)
113 PF06003 SMN: Survival motor n 24.5 25 0.00054 35.4 0.0 18 16-34 166-183 (264)
114 PLN02915 cellulose synthase A 24.4 47 0.001 39.6 2.2 48 291-341 16-67 (1044)
115 KOG1886|consensus 23.1 1.1E+02 0.0023 33.7 4.3 116 295-426 175-293 (464)
116 KOG4218|consensus 22.4 38 0.00083 35.9 0.9 49 291-339 16-75 (475)
117 PF14445 Prok-RING_2: Prokaryo 21.9 6.5 0.00014 30.7 -3.6 42 290-338 7-48 (57)
118 PF06098 Radial_spoke_3: Radia 21.8 2.7E+02 0.0058 28.8 6.7 42 95-136 123-164 (291)
119 PF13240 zinc_ribbon_2: zinc-r 21.8 50 0.0011 21.3 1.0 21 292-314 1-21 (23)
120 KOG1080|consensus 21.6 74 0.0016 38.0 3.0 50 290-339 573-623 (1005)
121 KOG2846|consensus 21.6 49 0.0011 34.6 1.4 38 304-344 218-255 (328)
122 PRK11788 tetratricopeptide rep 21.5 71 0.0015 31.9 2.6 25 290-316 354-378 (389)
123 KOG0112|consensus 21.0 85 0.0018 37.0 3.3 16 219-234 775-790 (975)
124 KOG2879|consensus 20.8 57 0.0012 33.5 1.7 48 291-342 240-287 (298)
125 PHA00626 hypothetical protein 20.8 83 0.0018 25.1 2.2 32 292-341 2-33 (59)
126 KOG3248|consensus 20.7 1.1E+02 0.0023 32.5 3.6 7 31-37 102-108 (421)
127 PRK05452 anaerobic nitric oxid 20.4 78 0.0017 34.4 2.7 13 327-339 454-466 (479)
128 PF11671 Apis_Csd: Complementa 20.0 1.2E+02 0.0026 28.1 3.4 8 59-66 123-130 (146)
No 1
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=99.91 E-value=6.3e-25 Score=176.00 Aligned_cols=64 Identities=47% Similarity=1.062 Sum_probs=61.9
Q ss_pred cccchhhHHHHHHhhhcCcccccCCCChhhHhhcC---ChhhHHHHHhhHhhhhccccccccccccC
Q psy5823 378 KSACAGSRADLKLCLLETDCVQVDRKTPRQCLREG---LAPQCEALKNTFFECKRSLLDNRTRFRGH 441 (444)
Q Consensus 378 ~saCk~~r~dL~~CL~~SdCv~~~~~t~~eCL~~~---~~~~C~~L~~~f~eCKR~llD~r~rfrG~ 441 (444)
++||++++.+|+.||++||||+++++||++||+++ +|.+|++|+++||+|||||||||+|||||
T Consensus 2 ~~sC~~~~~~L~~Cl~~SdCv~~~~~t~~~Cl~~~~~~~p~eC~~lr~~f~eCKrg~lDmr~RfRGn 68 (68)
T PF10203_consen 2 SKSCKGIREALAECLQESDCVKKEKRTPKDCLKDPSDELPEECQQLRKAFFECKRGMLDMRKRFRGN 68 (68)
T ss_pred CchHHHHHHHHHHHHhhChhhccCCCCHHHHHcCCCCcCCHHHHHHHHHHHHHhcccccccccccCc
Confidence 47999999999999999999999999999999975 89999999999999999999999999998
No 2
>KOG4114|consensus
Probab=99.90 E-value=5.8e-25 Score=174.56 Aligned_cols=67 Identities=51% Similarity=1.037 Sum_probs=64.3
Q ss_pred cccchhhHHHHHHhhhcCcccccCCCChhhHhhc----CChhhHHHHHhhHhhhhccccccccccccCCCC
Q psy5823 378 KSACAGSRADLKLCLLETDCVQVDRKTPRQCLRE----GLAPQCEALKNTFFECKRSLLDNRTRFRGHKGY 444 (444)
Q Consensus 378 ~saCk~~r~dL~~CL~~SdCv~~~~~t~~eCL~~----~~~~~C~~L~~~f~eCKR~llD~r~rfrG~~~~ 444 (444)
+.||.+++.+|++||++||||++++++|++||.. ++|.+|++|+.+|++|||||||||+||||++||
T Consensus 2 g~sC~~~r~alk~Cl~~S~Cv~v~~ks~reCldn~~~~~vPeeC~al~~af~dCKRslvDmrkRfrgrkg~ 72 (73)
T KOG4114|consen 2 GASCKDQRKALKICLLRSDCVMVERKSPRECLDNPELKDVPEECIALMKAFLDCKRSLVDMRKRFRGRKGT 72 (73)
T ss_pred cccHHHHHHHHHHHHhcCcceeeecCCHHHHhcCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 5699999999999999999999999999999995 389999999999999999999999999999997
No 3
>KOG1973|consensus
Probab=99.05 E-value=7.5e-11 Score=117.23 Aligned_cols=54 Identities=37% Similarity=1.064 Sum_probs=44.2
Q ss_pred CCCCCCceeccccCCCCCCCCCeeecCC--CC-CcccccccccCCCCCCCceecCCCCCcc
Q psy5823 284 TGDSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSKVD 341 (444)
Q Consensus 284 ded~~~~~~C~VC~~~ddg~~~mI~CD~--C~-~WfH~~CvG~~~~~~~~~w~Cp~C~~~~ 341 (444)
..+.+...|| +|+...+|. ||.||+ |+ .|||+.||||... +.+.|||+.|....
T Consensus 213 ~~d~~e~~yC-~Cnqvsyg~--Mi~CDn~~C~~eWFH~~CVGL~~~-PkgkWyC~~C~~~~ 269 (274)
T KOG1973|consen 213 AVDPDEPTYC-ICNQVSYGK--MIGCDNPGCPIEWFHFTCVGLKTK-PKGKWYCPRCKAEN 269 (274)
T ss_pred ccCCCCCEEE-Eeccccccc--ccccCCCCCCcceEEEeccccccC-CCCcccchhhhhhh
Confidence 3445567899 999877877 999998 99 9999999999865 44679999998543
No 4
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.91 E-value=1.8e-10 Score=85.97 Aligned_cols=46 Identities=48% Similarity=1.284 Sum_probs=39.2
Q ss_pred eccccCCCCCCCCCeeecCCCCCcccccccccCCC---CCCCceecCCCC
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE---PETSDWFCPKCS 338 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~---~~~~~w~Cp~C~ 338 (444)
+|.+|+..++++ .||+||.|+.|||..|++++.. .....|+|+.|.
T Consensus 1 ~C~vC~~~~~~~-~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDG-DMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTS-SEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCC-CeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 588999976666 8999999999999999999977 223489999986
No 5
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.85 E-value=2.2e-09 Score=105.07 Aligned_cols=48 Identities=35% Similarity=1.061 Sum_probs=41.9
Q ss_pred CCCceeccccCCCCCCCCCeeecCC--CC-CcccccccccCCCCCCCceecCCCC
Q psy5823 287 SKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCS 338 (444)
Q Consensus 287 ~~~~~~C~VC~~~ddg~~~mI~CD~--C~-~WfH~~CvG~~~~~~~~~w~Cp~C~ 338 (444)
+....|| .|++...|. ||.||+ |. .|||+.|||+... +.|.|||+.|.
T Consensus 218 e~e~lYC-fCqqvSyGq--MVaCDn~nCkrEWFH~~CVGLk~p-PKG~WYC~eCk 268 (271)
T COG5034 218 EGEELYC-FCQQVSYGQ--MVACDNANCKREWFHLECVGLKEP-PKGKWYCPECK 268 (271)
T ss_pred cCceeEE-Eeccccccc--ceecCCCCCchhheeccccccCCC-CCCcEeCHHhH
Confidence 3457899 999999998 999997 98 9999999999654 56899999997
No 6
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0825|consensus
Probab=98.33 E-value=1.9e-07 Score=102.67 Aligned_cols=53 Identities=26% Similarity=0.758 Sum_probs=46.5
Q ss_pred CCceeccccCCCCCCCCCeeecCCCCCc-ccccccccCCC-CCCCceecCCCCCcc
Q psy5823 288 KQVWICPACGVQDDGSLPMIGCDGCDAW-YHWVCVGLVAE-PETSDWFCPKCSKVD 341 (444)
Q Consensus 288 ~~~~~C~VC~~~ddg~~~mI~CD~C~~W-fH~~CvG~~~~-~~~~~w~Cp~C~~~~ 341 (444)
...+.|.||+.++..+ +||+||.|+.. ||.+||++++. .+.+.|||..|.-..
T Consensus 213 ~E~~~C~IC~~~DpEd-VLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL~ 267 (1134)
T KOG0825|consen 213 QEEVKCDICTVHDPED-VLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLLE 267 (1134)
T ss_pred cccccceeeccCChHH-hheeecccccceeeccccCcccccccccceecCcchhhh
Confidence 3568899999998888 99999999977 99999999987 777899999997544
No 8
>KOG1244|consensus
Probab=98.00 E-value=2.3e-06 Score=85.07 Aligned_cols=48 Identities=29% Similarity=0.803 Sum_probs=43.6
Q ss_pred eeccccCCCCCCCCCeeecCCCCCcccccccccCCC-CCCCceecCCCCC
Q psy5823 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 339 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~-~~~~~w~Cp~C~~ 339 (444)
-+|.|||..++++ .++.||.|++.||.+|+.++.. ++.+.|.|-.|..
T Consensus 282 k~csicgtsendd-qllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 282 KYCSICGTSENDD-QLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred ceeccccCcCCCc-eeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 3699999988887 8999999999999999999988 7889999999973
No 9
>KOG4323|consensus
Probab=97.81 E-value=8e-06 Score=86.59 Aligned_cols=49 Identities=33% Similarity=0.922 Sum_probs=39.4
Q ss_pred ceeccccCCCCCCCCCeeecCCCCCcccccccccCCC-----CCCCceecCCCCCc
Q psy5823 290 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCSKV 340 (444)
Q Consensus 290 ~~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~-----~~~~~w~Cp~C~~~ 340 (444)
.+|| -|+.+..++ .||+|++|+.|||..|+.+... .....|||..|...
T Consensus 171 c~vC-~~g~~~~~N-rmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 171 CSVC-YCGGPGAGN-RMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeee-ecCCcCccc-eeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 3556 566777777 8999999999999999987766 45568999999844
No 10
>KOG1844|consensus
Probab=97.67 E-value=7.3e-05 Score=79.48 Aligned_cols=59 Identities=27% Similarity=0.759 Sum_probs=49.4
Q ss_pred CCceeccccCCCCC-CCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCccccchhhh
Q psy5823 288 KQVWICPACGVQDD-GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDEGSRKEK 348 (444)
Q Consensus 288 ~~~~~C~VC~~~dd-g~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~~~~~k~k 348 (444)
.....| +|+..++ ++ +||+|+.|..|+|..|+|+.....+..|.|..|.+.........
T Consensus 84 ~~~~~c-~c~~~~~~~g-~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~~~~~~~ 143 (508)
T KOG1844|consen 84 REISRC-DCGLEDDMEG-LMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNKEVERAL 143 (508)
T ss_pred Cccccc-ccccccCCCc-eeeCCcccCcccCceeeeecCCCCchhceeeeeccccccchhhh
Confidence 456789 9999888 76 99999999999999999988774567899999998776655433
No 11
>KOG4299|consensus
Probab=97.66 E-value=1.7e-05 Score=86.15 Aligned_cols=48 Identities=33% Similarity=0.780 Sum_probs=40.4
Q ss_pred eeccccCCCCCCCCCeeecCCCCCcccccccccCCC---CCCCceecCCCCC
Q psy5823 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE---PETSDWFCPKCSK 339 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~---~~~~~w~Cp~C~~ 339 (444)
.+|..|+..+.-. ..|+||+|+..||+.|+.++.. .+.+.|+|+.|.-
T Consensus 254 ~fCsaCn~~~~F~-~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 254 DFCSACNGSGLFN-DIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHhCCccccc-cceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 3899999865432 4799999999999999999966 7788999999964
No 12
>KOG1512|consensus
Probab=97.60 E-value=2.7e-05 Score=78.06 Aligned_cols=47 Identities=32% Similarity=0.688 Sum_probs=39.3
Q ss_pred eccccCCCCCCCCCeeecCCCCCcccccccccCCCCCCCceecC-CCCCc
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCP-KCSKV 340 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp-~C~~~ 340 (444)
.|.||+.|...+ .|+.||.|++.||++|||+... +.|.|+|. .|...
T Consensus 316 lC~IC~~P~~E~-E~~FCD~CDRG~HT~CVGL~~l-P~G~WICD~~C~~~ 363 (381)
T KOG1512|consen 316 LCRICLGPVIES-EHLFCDVCDRGPHTLCVGLQDL-PRGEWICDMRCREA 363 (381)
T ss_pred hhhccCCcccch-heeccccccCCCCccccccccc-cCccchhhhHHHHh
Confidence 488999998777 7999999999999999999654 55799998 46543
No 13
>KOG1245|consensus
Probab=96.98 E-value=0.00014 Score=86.34 Aligned_cols=51 Identities=27% Similarity=0.751 Sum_probs=45.2
Q ss_pred eeccccCCCCCCCCCeeecCCCCCcccccccccCCC-CCCCceecCCCCCccc
Q psy5823 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVDE 342 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~-~~~~~w~Cp~C~~~~~ 342 (444)
..|.+|....+.. .|+.||.|+.|||+.|+.+... .+.++|+|+.|.....
T Consensus 1109 ~~c~~cr~k~~~~-~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1109 ALCKVCRRKKQDE-KMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred hhhhhhhhcccch-hhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 4799999877765 7999999999999999999888 7788999999997664
No 14
>KOG0383|consensus
Probab=96.79 E-value=0.00055 Score=76.23 Aligned_cols=50 Identities=26% Similarity=0.689 Sum_probs=39.9
Q ss_pred CceeccccCCCCCCCCCeeecCCCCCcccccccccCCC-CCCCceecCCCCCccc
Q psy5823 289 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVDE 342 (444)
Q Consensus 289 ~~~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~-~~~~~w~Cp~C~~~~~ 342 (444)
..-.|.+|.. +|. .|+||.|..|||.+|++++.. .+.+.|.|+.|.....
T Consensus 46 ~~e~c~ic~~--~g~--~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 46 EQEACRICAD--GGE--LLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhhhcC--CCc--EEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 3456889987 565 889999999999999999888 5555699999954443
No 15
>KOG4364|consensus
Probab=96.67 E-value=0.036 Score=61.37 Aligned_cols=18 Identities=11% Similarity=-0.121 Sum_probs=9.3
Q ss_pred hHHHHHHhhhcCcccccC
Q psy5823 384 SRADLKLCLLETDCVQVD 401 (444)
Q Consensus 384 ~r~dL~~CL~~SdCv~~~ 401 (444)
+...++.|+-.+.|+++.
T Consensus 610 ~~A~~ah~a~d~ak~~~~ 627 (811)
T KOG4364|consen 610 LQALTAHAAKDTAKLIIC 627 (811)
T ss_pred HHHHHHHHhhhhHHHhhh
Confidence 344455555555555543
No 16
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=96.67 E-value=0.00031 Score=50.11 Aligned_cols=34 Identities=35% Similarity=1.055 Sum_probs=19.7
Q ss_pred CeeecCCCCCcccccccccCCCCCCCceecCCCC
Q psy5823 305 PMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 338 (444)
Q Consensus 305 ~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~ 338 (444)
.||.|++|+.+.|..|.|+........|+|..|.
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 5899999999999999999888666579998773
No 17
>KOG1632|consensus
Probab=96.66 E-value=0.00065 Score=70.23 Aligned_cols=50 Identities=32% Similarity=0.729 Sum_probs=42.3
Q ss_pred eeccccCCCCCCCCCeeecCCCCCcccccc--cccCCC--CCCCceecCCCCCcc
Q psy5823 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVC--VGLVAE--PETSDWFCPKCSKVD 341 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~C~~WfH~~C--vG~~~~--~~~~~w~Cp~C~~~~ 341 (444)
.+| .|..+.+.+.+|+.||.|..|||..| +|++.. .....|+|..|....
T Consensus 61 ~~~-~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~ 114 (345)
T KOG1632|consen 61 RYC-KCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQ 114 (345)
T ss_pred chh-hcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhh
Confidence 477 88888776558999999999999999 998877 567789999998554
No 18
>KOG0955|consensus
Probab=96.66 E-value=0.0014 Score=75.80 Aligned_cols=52 Identities=23% Similarity=0.607 Sum_probs=41.2
Q ss_pred CceeccccCCCCC--CCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCccc
Q psy5823 289 QVWICPACGVQDD--GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 342 (444)
Q Consensus 289 ~~~~C~VC~~~dd--g~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~~ 342 (444)
++..|.||...+- .+ +.|.||.|+..+|..|+|++. .+.+.|+|..|.....
T Consensus 218 ~D~~C~iC~~~~~~n~n-~ivfCD~Cnl~VHq~Cygi~~-ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSN-VIVFCDGCNLAVHQECYGIPF-IPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred CCccceeecccccCCCc-eEEEcCCCcchhhhhccCCCC-CCCCcEeehhhccCcC
Confidence 3446889987663 35 899999999999999999654 4568999999986543
No 19
>KOG0954|consensus
Probab=96.34 E-value=0.0016 Score=72.34 Aligned_cols=49 Identities=29% Similarity=0.758 Sum_probs=40.1
Q ss_pred ceeccccCCCC--CCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCc
Q psy5823 290 VWICPACGVQD--DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 340 (444)
Q Consensus 290 ~~~C~VC~~~d--dg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~ 340 (444)
.+.|.||..+| .++ .||.||.|+.-.|..|.||... +.+.|.|..|.-.
T Consensus 271 dviCDvCrspD~e~~n-eMVfCd~Cn~cVHqaCyGIle~-p~gpWlCr~Calg 321 (893)
T KOG0954|consen 271 DVICDVCRSPDSEEAN-EMVFCDKCNICVHQACYGILEV-PEGPWLCRTCALG 321 (893)
T ss_pred cceeceecCCCccccc-eeEEeccchhHHHHhhhceeec-CCCCeeehhcccc
Confidence 46799999886 233 7999999999999999999765 4478999888643
No 20
>KOG0957|consensus
Probab=96.28 E-value=0.0017 Score=69.53 Aligned_cols=48 Identities=25% Similarity=0.684 Sum_probs=41.0
Q ss_pred ceeccccCCCCCCCCCeeecCCCCCcccccccccCCC-----CCCCceecCCCC
Q psy5823 290 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCS 338 (444)
Q Consensus 290 ~~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~-----~~~~~w~Cp~C~ 338 (444)
.+.|.||.+..|-. ++++||.|+.-||+.|+.+++. ....-|.|..|-
T Consensus 544 ~ysCgiCkks~dQH-ll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECd 596 (707)
T KOG0957|consen 544 NYSCGICKKSTDQH-LLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECD 596 (707)
T ss_pred ceeeeeeccchhhH-HHhhcchhhceeeccccCCccccCcccccCcceeecccc
Confidence 45699999876665 8999999999999999999988 335679999994
No 21
>KOG4364|consensus
Probab=96.08 E-value=0.068 Score=59.28 Aligned_cols=7 Identities=29% Similarity=0.805 Sum_probs=3.5
Q ss_pred ceecCCC
Q psy5823 331 DWFCPKC 337 (444)
Q Consensus 331 ~w~Cp~C 337 (444)
.||=|+|
T Consensus 557 gffVPhg 563 (811)
T KOG4364|consen 557 GFFVPHG 563 (811)
T ss_pred CeecCCc
Confidence 4555554
No 22
>KOG0957|consensus
Probab=96.03 E-value=0.0049 Score=66.15 Aligned_cols=49 Identities=31% Similarity=0.678 Sum_probs=35.6
Q ss_pred eeccccCC--CCCCCCCeeecCCCCCcccccccccCCC------C---CCCceecCCCCCc
Q psy5823 291 WICPACGV--QDDGSLPMIGCDGCDAWYHWVCVGLVAE------P---ETSDWFCPKCSKV 340 (444)
Q Consensus 291 ~~C~VC~~--~ddg~~~mI~CD~C~~WfH~~CvG~~~~------~---~~~~w~Cp~C~~~ 340 (444)
++|.||.. .+|.+ .+|+||.|+.-.|-.|.|+... . ....|||.-|.-.
T Consensus 120 ~iCcVClg~rs~da~-ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~G 179 (707)
T KOG0957|consen 120 VICCVCLGQRSVDAG-EILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLYG 179 (707)
T ss_pred eEEEEeecCcccccc-ceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhcC
Confidence 35669953 33444 6999999999999999998733 1 2367999887643
No 23
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=95.65 E-value=0.0079 Score=63.92 Aligned_cols=52 Identities=31% Similarity=0.747 Sum_probs=37.7
Q ss_pred ceeccccCCCCC--CCCCeeecCCCCCccccccc--------ccCCC----CCCCceecCCCCCcc
Q psy5823 290 VWICPACGVQDD--GSLPMIGCDGCDAWYHWVCV--------GLVAE----PETSDWFCPKCSKVD 341 (444)
Q Consensus 290 ~~~C~VC~~~dd--g~~~mI~CD~C~~WfH~~Cv--------G~~~~----~~~~~w~Cp~C~~~~ 341 (444)
.+.|.||++.|+ +.-.||-||.|+.|-|+.|. |++.. ..+..|+|..|....
T Consensus 128 ~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~s 193 (446)
T PF07227_consen 128 RCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKTS 193 (446)
T ss_pred cCCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCChh
Confidence 466888987652 22389999999999999994 33332 235689999998554
No 24
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.49 E-value=0.0085 Score=55.36 Aligned_cols=29 Identities=28% Similarity=0.732 Sum_probs=24.6
Q ss_pred cccccccccCCC-CCCCceecCCCCCcccc
Q psy5823 315 WYHWVCVGLVAE-PETSDWFCPKCSKVDEG 343 (444)
Q Consensus 315 WfH~~CvG~~~~-~~~~~w~Cp~C~~~~~~ 343 (444)
.||+.|+.+++. .+.++|+|+.|......
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~~ 30 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKSG 30 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCCC
Confidence 489999999999 77899999999865443
No 25
>KOG1632|consensus
Probab=95.03 E-value=0.0025 Score=65.95 Aligned_cols=54 Identities=30% Similarity=0.738 Sum_probs=42.6
Q ss_pred CCceeccccCCCCCCCCCeeecCCCCCcccccccccCCC--CCCCc----eecCCCCCcc
Q psy5823 288 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSD----WFCPKCSKVD 341 (444)
Q Consensus 288 ~~~~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~--~~~~~----w~Cp~C~~~~ 341 (444)
.....|..||..+....+||+|+.|..|||+.|+.+... ..+.. |+|++|....
T Consensus 237 ~~~~~~~~cg~~~~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~~~ 296 (345)
T KOG1632|consen 237 YSKLICDPCGLSDANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTVLK 296 (345)
T ss_pred cccccccccCcchHHHHHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceeecc
Confidence 344679889987755459999999999999999999877 22334 9999998633
No 26
>KOG4443|consensus
Probab=94.76 E-value=0.015 Score=64.26 Aligned_cols=48 Identities=31% Similarity=0.857 Sum_probs=39.6
Q ss_pred eeccccCCCCCCCCCeeecCCCCCcccccccccCCC-CCCCceecCCCCC
Q psy5823 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 339 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~-~~~~~w~Cp~C~~ 339 (444)
..|..|+...|.. ..+.|+.|+..||.+|..+... .+.+.|+|.-|..
T Consensus 69 rvCe~c~~~gD~~-kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~ 117 (694)
T KOG4443|consen 69 RVCEACGTTGDPK-KFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTR 117 (694)
T ss_pred eeeeeccccCCcc-cccccccccccccccccCCccccccCcccccHHHHh
Confidence 4577788766665 6778999999999999999888 7778999997764
No 27
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=94.35 E-value=0.017 Score=62.05 Aligned_cols=48 Identities=29% Similarity=0.717 Sum_probs=38.8
Q ss_pred eeccccCCCCC--CCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCc
Q psy5823 291 WICPACGVQDD--GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 340 (444)
Q Consensus 291 ~~C~VC~~~dd--g~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~ 340 (444)
..|.+|...+. .+ .+|.||+|+-..|-.|.|+.-. +.|.|+|..|.-.
T Consensus 194 ~~C~~c~~t~~eN~n-aiVfCdgC~i~VHq~CYGI~f~-peG~WlCrkCi~~ 243 (669)
T COG5141 194 DICTKCTSTHNENSN-AIVFCDGCEICVHQSCYGIQFL-PEGFWLCRKCIYG 243 (669)
T ss_pred hhhHhccccccCCcc-eEEEecCcchhhhhhcccceec-Ccchhhhhhhccc
Confidence 47999998764 34 6899999999999999999655 4578999988643
No 28
>KOG0956|consensus
Probab=92.52 E-value=0.054 Score=60.29 Aligned_cols=47 Identities=36% Similarity=0.869 Sum_probs=35.6
Q ss_pred ccccCCCC-CCCCCeeecCC--CCCcccccccccCCCCCCCceecCCCCCc
Q psy5823 293 CPACGVQD-DGSLPMIGCDG--CDAWYHWVCVGLVAEPETSDWFCPKCSKV 340 (444)
Q Consensus 293 C~VC~~~d-dg~~~mI~CD~--C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~ 340 (444)
|-||.... +.+-.+|.||+ |..+.|..|.||... +.+.|||..|...
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqV-PtGpWfCrKCesq 57 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQV-PTGPWFCRKCESQ 57 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcceeEec-CCCchhhhhhhhh
Confidence 43897543 22237999996 999999999999654 5678999999743
No 29
>KOG1144|consensus
Probab=91.81 E-value=0.39 Score=54.51 Aligned_cols=7 Identities=14% Similarity=0.017 Sum_probs=3.9
Q ss_pred hhhHhhc
Q psy5823 405 PRQCLRE 411 (444)
Q Consensus 405 ~~eCL~~ 411 (444)
.-+||+.
T Consensus 491 lld~ir~ 497 (1064)
T KOG1144|consen 491 LLDKIRG 497 (1064)
T ss_pred HHHHhhc
Confidence 4566663
No 30
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=89.61 E-value=0.23 Score=47.03 Aligned_cols=48 Identities=27% Similarity=0.804 Sum_probs=35.5
Q ss_pred eccccCCC---CCCCCCeeecCCCCCcccccccccCCC---------CCCCceecCCCCCc
Q psy5823 292 ICPACGVQ---DDGSLPMIGCDGCDAWYHWVCVGLVAE---------PETSDWFCPKCSKV 340 (444)
Q Consensus 292 ~C~VC~~~---ddg~~~mI~CD~C~~WfH~~CvG~~~~---------~~~~~w~Cp~C~~~ 340 (444)
.|.+|+.. ..-+ .||.|-+|...||-.|+|+... ...+...|..|...
T Consensus 1 ~C~~C~~~g~~~~kG-~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKG-PLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCC-CeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 37788542 2334 7999999999999999999876 23445678888743
No 31
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=87.83 E-value=0.21 Score=33.75 Aligned_cols=29 Identities=38% Similarity=0.703 Sum_probs=13.1
Q ss_pred eccccCCCCCCCCCeeecCCCCCccccccc
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCV 321 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~WfH~~Cv 321 (444)
.|.+|+.+.+++ .+-.|..|+.+.|..|+
T Consensus 2 ~C~~C~~~~~~~-~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-ceEECccCCCccChhcC
Confidence 588999988774 67889999999999985
No 32
>KOG1029|consensus
Probab=86.98 E-value=17 Score=41.89 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=21.8
Q ss_pred hhhhhhcchHHHHhhhhhhHHHHhhhhhHHHHHHHHHHH
Q psy5823 186 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 224 (444)
Q Consensus 186 ~~~~~kekk~ekerke~~~ke~~kk~k~~~kk~kkek~k 224 (444)
+...|.|++++.+++|...+|-++-|+.+=++++..++.
T Consensus 384 E~qrEEerkkeie~rEaar~ElEkqRqlewErar~qem~ 422 (1118)
T KOG1029|consen 384 ERQREEERKKEIERREAAREELEKQRQLEWERARRQEML 422 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445556666666666666666665555555554443
No 33
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=86.90 E-value=0.28 Score=37.16 Aligned_cols=32 Identities=22% Similarity=0.593 Sum_probs=17.7
Q ss_pred CeeecCCCCCcccccccccCC--CCCCCceecCCC
Q psy5823 305 PMIGCDGCDAWYHWVCVGLVA--EPETSDWFCPKC 337 (444)
Q Consensus 305 ~mI~CD~C~~WfH~~CvG~~~--~~~~~~w~Cp~C 337 (444)
.|||||.|..|=.+. .++.. ...++.|+|..-
T Consensus 2 ~WVQCd~C~KWR~lp-~~~~~~~~~~~d~W~C~~n 35 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP-EEVDPIREELPDPWYCSMN 35 (50)
T ss_dssp EEEE-TTT--EEEE--CCHHCTSCCSSTT--GGGS
T ss_pred eEEECCCCCceeeCC-hhhCcccccCCCeEEcCCC
Confidence 599999999998877 44444 223348999863
No 34
>KOG4443|consensus
Probab=86.52 E-value=0.14 Score=56.90 Aligned_cols=49 Identities=31% Similarity=0.773 Sum_probs=38.5
Q ss_pred ceeccccCCCCCCC--CCeeecCCCCCcccccccccCCC-----CCCCceecCCCC
Q psy5823 290 VWICPACGVQDDGS--LPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCS 338 (444)
Q Consensus 290 ~~~C~VC~~~ddg~--~~mI~CD~C~~WfH~~CvG~~~~-----~~~~~w~Cp~C~ 338 (444)
..+|++|...+... ..|++|+.|.+|.|..|-|+... ..+-.|-|..|+
T Consensus 145 ~~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~CR 200 (694)
T KOG4443|consen 145 LSYCPVCLIVYQDSESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCSTCR 200 (694)
T ss_pred cccCchHHHhhhhccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccceee
Confidence 36899998766332 25799999999999999998766 233479999998
No 35
>KOG0163|consensus
Probab=85.55 E-value=9.6 Score=43.85 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=9.9
Q ss_pred hhhhcchhceeccccCccccc
Q psy5823 89 EKEYSKVKDVELGVTPMVPNI 109 (444)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~i 109 (444)
++--+.+.+.+.-|..+|.-|
T Consensus 864 ~e~~~~~~~~~~~id~lv~~I 884 (1259)
T KOG0163|consen 864 EEIISGANSTYRQIDDLVKKI 884 (1259)
T ss_pred HHHHhhhhhHHHHHHHHHHHh
Confidence 334445555555554444443
No 36
>KOG1473|consensus
Probab=82.40 E-value=0.77 Score=53.99 Aligned_cols=44 Identities=25% Similarity=0.509 Sum_probs=36.7
Q ss_pred eeccccCCCCCCCCCeeecCCCCCcccccccccCCC-CCCCceecCCCC
Q psy5823 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCS 338 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~-~~~~~w~Cp~C~ 338 (444)
.+|.+|+. .++ .+||+.|++.||+.|+.++.. .+...|-|..|.
T Consensus 345 dhcrf~~d--~~~--~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~ 389 (1414)
T KOG1473|consen 345 DHCRFCHD--LGD--LLCCETCPRVVHLECVFHPRFAVPSAFWECEVCN 389 (1414)
T ss_pred ccccccCc--ccc--eeecccCCceEEeeecCCccccCCCccchhhhhh
Confidence 46877876 444 899999999999999998887 666789999886
No 37
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=82.19 E-value=0.9 Score=35.52 Aligned_cols=33 Identities=33% Similarity=0.704 Sum_probs=26.6
Q ss_pred ceeccccCCCCC-CCCCeeecCCCCCccccccccc
Q psy5823 290 VWICPACGVQDD-GSLPMIGCDGCDAWYHWVCVGL 323 (444)
Q Consensus 290 ~~~C~VC~~~dd-g~~~mI~CD~C~~WfH~~CvG~ 323 (444)
...|.+|+...- ++ ..|.|..|..-||-.|...
T Consensus 5 ~~~C~~Cg~~~~~~d-DiVvCp~CgapyHR~C~~~ 38 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGD-DIVVCPECGAPYHRDCWEK 38 (54)
T ss_pred CccChhhCCcccCCC-CEEECCCCCCcccHHHHhh
Confidence 357999998872 22 4999999999999999843
No 38
>KOG2752|consensus
Probab=81.69 E-value=0.68 Score=47.70 Aligned_cols=32 Identities=28% Similarity=0.719 Sum_probs=25.4
Q ss_pred CceeccccCCCCCC-----CCCeeecCCCCCccc-cccc
Q psy5823 289 QVWICPACGVQDDG-----SLPMIGCDGCDAWYH-WVCV 321 (444)
Q Consensus 289 ~~~~C~VC~~~ddg-----~~~mI~CD~C~~WfH-~~Cv 321 (444)
...+| .|..++++ +..|+||..|..||| -.|+
T Consensus 127 qG~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~ 164 (345)
T KOG2752|consen 127 QGLFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCM 164 (345)
T ss_pred cceeE-EecCCCCCccccccceeeeEEeccchhcccccC
Confidence 34689 99987754 347999999999999 6665
No 39
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=79.95 E-value=0.93 Score=38.75 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=25.8
Q ss_pred CceeccccCCCCCCCCCeeecCC--CCCccccccccc
Q psy5823 289 QVWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGL 323 (444)
Q Consensus 289 ~~~~C~VC~~~ddg~~~mI~CD~--C~~WfH~~CvG~ 323 (444)
....|.+|+.. ++ ..|.|.. |..+||..|.-.
T Consensus 54 ~~~~C~iC~~~--~G-~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GG-ACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--Cc-eeEEcCCCCCCcCCCHHHHHH
Confidence 34579999996 33 5899998 999999999643
No 40
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=79.09 E-value=1.7 Score=41.81 Aligned_cols=40 Identities=30% Similarity=0.828 Sum_probs=30.8
Q ss_pred eeccccCCCC-----CCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCC
Q psy5823 291 WICPACGVQD-----DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 339 (444)
Q Consensus 291 ~~C~VC~~~d-----dg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~ 339 (444)
..|.+|+..+ +.+ ..+.|+.|...||-.|..- -.||.|..
T Consensus 153 fiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~~--------~~CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFRK--------KSCPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcCC--------CCCCCcHh
Confidence 5788888643 333 5889999999999999973 12999983
No 41
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=75.62 E-value=0.28 Score=35.43 Aligned_cols=43 Identities=21% Similarity=0.525 Sum_probs=28.8
Q ss_pred eccccCCCCCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCC
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 338 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~ 338 (444)
.|.||......+..++... |+-.||..|+...... ...||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~---~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR---NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH---SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh---CCcCCccC
Confidence 4889988764332566665 9999999998654432 23788774
No 42
>KOG2626|consensus
Probab=74.93 E-value=3.6 Score=45.12 Aligned_cols=50 Identities=16% Similarity=0.537 Sum_probs=36.8
Q ss_pred eeccccCCCCCCCCCeeecCCCCCcccccccccCCC-------CCCCceecCCCCCcc
Q psy5823 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-------PETSDWFCPKCSKVD 341 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~-------~~~~~w~Cp~C~~~~ 341 (444)
.+| .|+...+....-++|..|..|||+.|+..... .....|.|..|...+
T Consensus 21 ~~~-y~e~~r~l~~~elqcs~clk~~~~~~~~~~~~~~s~~pf~t~y~fvc~~c~~~~ 77 (544)
T KOG2626|consen 21 TVC-YCEGERNLGIVELQCSTCLKWFHLPTLEAFHLIKSSLPFMTSYEFVCKECTPSG 77 (544)
T ss_pred ccc-ccccccccCceeeEeeecccccccccccccccccccCCcccceeEEeccccCcc
Confidence 467 78887766667899999999999866533222 334579999999764
No 43
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=74.15 E-value=3 Score=33.64 Aligned_cols=49 Identities=27% Similarity=0.513 Sum_probs=19.4
Q ss_pred eccccCCCC--CCCCCeeecC--CCCCcccccccccCC-----C---CCCCceecCCCCCc
Q psy5823 292 ICPACGVQD--DGSLPMIGCD--GCDAWYHWVCVGLVA-----E---PETSDWFCPKCSKV 340 (444)
Q Consensus 292 ~C~VC~~~d--dg~~~mI~CD--~C~~WfH~~CvG~~~-----~---~~~~~w~Cp~C~~~ 340 (444)
.|.||.... ++....+.|+ .|..-||..|+.-.. . ......-||.|...
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 588998643 3444578898 799999999974221 1 22335679999843
No 44
>KOG4299|consensus
Probab=71.79 E-value=3.2 Score=46.23 Aligned_cols=51 Identities=27% Similarity=0.592 Sum_probs=39.2
Q ss_pred CCCCCceeccccCCCCCCCCCeeecCCCCCcccccccccCCC--CCCCceecCCCCC
Q psy5823 285 GDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSK 339 (444)
Q Consensus 285 ed~~~~~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~--~~~~~w~Cp~C~~ 339 (444)
....+...|.+|.. +|+ .++|+.|+..||+.|.+.... .....|.|..|..
T Consensus 42 ~~~k~~ts~~~~~~--~gn--~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~ 94 (613)
T KOG4299|consen 42 RSGKAATSCGICKS--GGN--LLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPK 94 (613)
T ss_pred cccchhhhcchhhh--cCC--ccccccCccccchhccCcccCcccccccccccCCCc
Confidence 33445677888888 555 779999999999999998888 3455677777765
No 45
>KOG1512|consensus
Probab=71.17 E-value=1.3 Score=45.36 Aligned_cols=35 Identities=31% Similarity=0.661 Sum_probs=29.7
Q ss_pred CeeecCCCCCcccccccccCCC----CCCCceecCCCCC
Q psy5823 305 PMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCSK 339 (444)
Q Consensus 305 ~mI~CD~C~~WfH~~CvG~~~~----~~~~~w~Cp~C~~ 339 (444)
.||+|-.|...+|-+|+.++.. ...-.|.|..|.-
T Consensus 278 S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l 316 (381)
T KOG1512|consen 278 SWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL 316 (381)
T ss_pred cceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh
Confidence 6999999999999999998877 3345799998864
No 46
>KOG1144|consensus
Probab=69.63 E-value=22 Score=41.20 Aligned_cols=10 Identities=20% Similarity=-0.047 Sum_probs=6.0
Q ss_pred HHHHHhhhcC
Q psy5823 386 ADLKLCLLET 395 (444)
Q Consensus 386 ~dL~~CL~~S 395 (444)
--|+.||..|
T Consensus 489 TKlld~ir~t 498 (1064)
T KOG1144|consen 489 TKLLDKIRGT 498 (1064)
T ss_pred hHHHHHhhcc
Confidence 3566666665
No 47
>KOG1029|consensus
Probab=66.60 E-value=77 Score=37.00 Aligned_cols=8 Identities=38% Similarity=0.322 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy5823 178 EKKEEKEF 185 (444)
Q Consensus 178 ~~~k~k~~ 185 (444)
++++|-++
T Consensus 400 aar~ElEk 407 (1118)
T KOG1029|consen 400 AAREELEK 407 (1118)
T ss_pred HHHHHHHH
Confidence 33333333
No 48
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=65.62 E-value=3.9 Score=34.05 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=22.1
Q ss_pred eccccCCCCCCCCCeeecCCCCCcccccccc
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG 322 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG 322 (444)
.|.+|+++-+.+.+.+..+ +..+|..|+.
T Consensus 80 ~C~vC~k~l~~~~f~~~p~--~~v~H~~C~~ 108 (109)
T PF10367_consen 80 KCSVCGKPLGNSVFVVFPC--GHVVHYSCIK 108 (109)
T ss_pred CccCcCCcCCCceEEEeCC--CeEEeccccc
Confidence 5999999887774555544 4889999973
No 49
>KOG1952|consensus
Probab=65.22 E-value=3.2 Score=47.85 Aligned_cols=53 Identities=25% Similarity=0.668 Sum_probs=39.2
Q ss_pred CceeccccCCCCCCCCCeeecCCCCCcccccccccCCC----CCCCceecCCCCCcc
Q psy5823 289 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCSKVD 341 (444)
Q Consensus 289 ~~~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~----~~~~~w~Cp~C~~~~ 341 (444)
...-|.||...-+....|..|-+|...||+.|+.-... .....|-|+.|...+
T Consensus 190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 34679999765544436888999999999999754333 334689999999654
No 50
>KOG1246|consensus
Probab=64.39 E-value=12 Score=43.47 Aligned_cols=51 Identities=29% Similarity=0.665 Sum_probs=41.7
Q ss_pred CceeccccCCCCCCCCCeeecCCCCCcccccccccCCC-CCCCceecCCCCCcc
Q psy5823 289 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVD 341 (444)
Q Consensus 289 ~~~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~-~~~~~w~Cp~C~~~~ 341 (444)
....|..|....... .. +|++|..-||..|..+... ...+.|.|+.|....
T Consensus 154 ~~~~~~~~~k~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEK-LL-LCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTP 205 (904)
T ss_pred cchhhhccccCCCcc-ce-ecccccCcccccccCCCCCcCCcCcccCCcccccc
Confidence 445688888865553 45 9999999999999999888 777899999998763
No 51
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=64.04 E-value=3.8 Score=33.60 Aligned_cols=32 Identities=28% Similarity=0.703 Sum_probs=25.0
Q ss_pred ceeccccCCCCCCCCCeeecCC--CCCcccccccccC
Q psy5823 290 VWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGLV 324 (444)
Q Consensus 290 ~~~C~VC~~~ddg~~~mI~CD~--C~~WfH~~CvG~~ 324 (444)
...|.+|+.. .| ..|.|.. |..+||..|.-..
T Consensus 36 ~~~C~~C~~~-~G--a~i~C~~~~C~~~fH~~CA~~~ 69 (90)
T PF13771_consen 36 KLKCSICKKK-GG--ACIGCSHPGCSRSFHVPCARKA 69 (90)
T ss_pred CCCCcCCCCC-CC--eEEEEeCCCCCcEEChHHHccC
Confidence 3579999985 24 4899985 9999999997543
No 52
>KOG3054|consensus
Probab=63.96 E-value=45 Score=33.82 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=18.8
Q ss_pred HhhhhhhHHHHhhhhhHHHHHHHHHHHHHHHHh
Q psy5823 198 IRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 230 (444)
Q Consensus 198 erke~~~ke~~kk~k~~~kk~kkek~k~kKKEK 230 (444)
...|...+++++.|+..+++++++.+.=.|++-
T Consensus 149 ~~eEae~k~ee~~RkakEE~arkeheEylkmKa 181 (299)
T KOG3054|consen 149 LAEEAELKEEEKERKAKEEEARKEHEEYLKMKA 181 (299)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555556666666677776666653
No 53
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=57.86 E-value=5 Score=34.12 Aligned_cols=46 Identities=26% Similarity=0.681 Sum_probs=28.8
Q ss_pred ccccCCCCCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCc
Q psy5823 293 CPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 340 (444)
Q Consensus 293 C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~ 340 (444)
|+.|..|+|+- .+| -..|+..||..|+---.......=.||.|+..
T Consensus 35 Cp~Ck~Pgd~C-plv-~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDC-PLV-WGKCSHNFHMHCILKWLSTQSSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCC-cee-eccCccHHHHHHHHHHHccccCCCCCCCcCCe
Confidence 45555555444 334 34599999999986444422224589999853
No 54
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=56.10 E-value=10 Score=25.69 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=22.7
Q ss_pred eccccCCCCCCCCCeeecCCCCCccccccc
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCV 321 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~WfH~~Cv 321 (444)
.|.+|++..++.. .-.|+.|..-.|..|+
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 5889998766552 6679999998998885
No 55
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=55.44 E-value=4.1 Score=33.20 Aligned_cols=28 Identities=43% Similarity=0.914 Sum_probs=23.8
Q ss_pred eeccccCCCCCCCCCeeecCCCCCcccccccccC
Q psy5823 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV 324 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~ 324 (444)
..| .|.. .-||.|-+|+..-|-.|+|+.
T Consensus 34 ~~C-~C~L-----kAMi~Cq~CGAFCHDDCIgps 61 (69)
T PF13922_consen 34 NKC-ACSL-----KAMIMCQGCGAFCHDDCIGPS 61 (69)
T ss_pred ccc-ccch-----HHHHHHhhccchhccccccHH
Confidence 357 6776 369999999999999999985
No 56
>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional
Probab=53.82 E-value=3.1e+02 Score=29.45 Aligned_cols=11 Identities=9% Similarity=0.410 Sum_probs=5.4
Q ss_pred hhhhcchhcee
Q psy5823 89 EKEYSKVKDVE 99 (444)
Q Consensus 89 ~~~~~~~~~~~ 99 (444)
-..|.+|+++.
T Consensus 61 ~~q~~~~q~q~ 71 (387)
T PRK09510 61 VEQYNRQQQQQ 71 (387)
T ss_pred HHHHHHHHHhH
Confidence 34455555544
No 57
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=51.95 E-value=5.7 Score=39.92 Aligned_cols=41 Identities=27% Similarity=0.673 Sum_probs=17.9
Q ss_pred ceeccccCCCC-------CC--CCCeeecCCCCCcccccccccCCCCCCCceecCCCCCcc
Q psy5823 290 VWICPACGVQD-------DG--SLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 341 (444)
Q Consensus 290 ~~~C~VC~~~d-------dg--~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~ 341 (444)
..+|+|||... ++ +.-++.|..|+.-+|+. ...|+.|....
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~-----------R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV-----------RIKCPYCGNTD 221 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE-------------TTS-TTT---S
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec-----------CCCCcCCCCCC
Confidence 36899999641 21 33789999999444432 24588887443
No 58
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=51.81 E-value=2e+02 Score=31.88 Aligned_cols=12 Identities=25% Similarity=0.246 Sum_probs=8.0
Q ss_pred CCCCCCCcCCCC
Q psy5823 40 PMLQHPLIPQPL 51 (444)
Q Consensus 40 ~~~~~~~~~~~~ 51 (444)
|-=|+-+||+..
T Consensus 151 pG~tqI~IPL~~ 162 (489)
T PF05262_consen 151 PGKTQIVIPLSD 162 (489)
T ss_pred CCCceEEEeccc
Confidence 445677888873
No 59
>KOG0163|consensus
Probab=51.04 E-value=1.5e+02 Score=34.79 Aligned_cols=10 Identities=30% Similarity=0.903 Sum_probs=5.1
Q ss_pred HHHHHHhhhc
Q psy5823 385 RADLKLCLLE 394 (444)
Q Consensus 385 r~dL~~CL~~ 394 (444)
.+|+.+|-+.
T Consensus 1200 kDDmqMCeL~ 1209 (1259)
T KOG0163|consen 1200 KDDMQMCELS 1209 (1259)
T ss_pred CchHHHhcch
Confidence 4455555443
No 60
>KOG1829|consensus
Probab=51.00 E-value=4.9 Score=44.75 Aligned_cols=43 Identities=28% Similarity=0.643 Sum_probs=30.0
Q ss_pred ceeccccCCCC----CCCCCeeecCCCCCcccccccccCCCCCCCceecCCCC
Q psy5823 290 VWICPACGVQD----DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 338 (444)
Q Consensus 290 ~~~C~VC~~~d----dg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~ 338 (444)
.+.|.+|...+ ...+...-|+.|..|||-.|+.-... .||.|.
T Consensus 511 gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~s~------~CPrC~ 557 (580)
T KOG1829|consen 511 GFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRKSP------CCPRCE 557 (580)
T ss_pred eeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhccCC------CCCchH
Confidence 35688885432 10124678999999999999976433 299998
No 61
>KOG3612|consensus
Probab=49.00 E-value=20 Score=39.68 Aligned_cols=49 Identities=18% Similarity=0.261 Sum_probs=37.4
Q ss_pred CCCceeccccCCCCCCCCCeeecCCCCCcccccccccCCC--CCCCceecCCCCC
Q psy5823 287 SKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSK 339 (444)
Q Consensus 287 ~~~~~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~--~~~~~w~Cp~C~~ 339 (444)
.+...+|.-|.. ++. .+-|+.|.+-||..|..+... .....|.|+.|..
T Consensus 57 ~N~d~~cfechl--pg~--vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 57 SNIDPFCFECHL--PGA--VLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred cCCCcccccccC--Ccc--eeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 345678988988 444 788999999999999988766 3345688888753
No 62
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=48.95 E-value=7.2 Score=32.27 Aligned_cols=33 Identities=30% Similarity=0.693 Sum_probs=19.6
Q ss_pred CeeecCC-CCCcccccccccCCC------CCCCceecCCC
Q psy5823 305 PMIGCDG-CDAWYHWVCVGLVAE------PETSDWFCPKC 337 (444)
Q Consensus 305 ~mI~CD~-C~~WfH~~CvG~~~~------~~~~~w~Cp~C 337 (444)
.||.|.+ =+-|.|..|+++... .....|||..=
T Consensus 29 AMI~cs~~~GHWvhaqCm~LsE~~L~~LSq~n~KYfC~dH 68 (78)
T PF13341_consen 29 AMIFCSRGGGHWVHAQCMDLSETMLIQLSQENTKYFCNDH 68 (78)
T ss_dssp -EEEE-STT-EEEETGGGT--HHHHHHHHHSSS-B--TTT
T ss_pred eEEEEeCCCceEeEeecccchHHHHHHHccCCceEEEhhh
Confidence 6999986 448999999998766 34567999753
No 63
>KOG3277|consensus
Probab=48.55 E-value=8.7 Score=36.18 Aligned_cols=28 Identities=21% Similarity=0.742 Sum_probs=20.4
Q ss_pred ceeccccCC---------CCCCCCCeeecCCCCCcccc
Q psy5823 290 VWICPACGV---------QDDGSLPMIGCDGCDAWYHW 318 (444)
Q Consensus 290 ~~~C~VC~~---------~ddg~~~mI~CD~C~~WfH~ 318 (444)
.+.|.+|+. .+..++.+|+|++|.. +|+
T Consensus 79 ~yTCkvCntRs~ktisk~AY~~GvVivqC~gC~~-~Hl 115 (165)
T KOG3277|consen 79 AYTCKVCNTRSTKTISKQAYEKGVVIVQCPGCKN-HHL 115 (165)
T ss_pred EEEeeccCCccccccChhhhhCceEEEECCCCcc-cee
Confidence 467999984 3445568999999986 343
No 64
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=48.42 E-value=18 Score=26.81 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=25.4
Q ss_pred ceeccccCCCCCC-CCCeeecCCCCCcccccccccC
Q psy5823 290 VWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGLV 324 (444)
Q Consensus 290 ~~~C~VC~~~ddg-~~~mI~CD~C~~WfH~~CvG~~ 324 (444)
..+|.+|+..-.+ ....+.|..|....|..|+...
T Consensus 11 ~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 11 PTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp TEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 4689999987621 2267899999999999998653
No 65
>KOG1705|consensus
Probab=48.35 E-value=7.7 Score=33.65 Aligned_cols=50 Identities=20% Similarity=0.481 Sum_probs=34.9
Q ss_pred eccccCCCCCCCCCeeecCCCC-CcccccccccCCCCCCCceecCCCCCcc
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCD-AWYHWVCVGLVAEPETSDWFCPKCSKVD 341 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~-~WfH~~CvG~~~~~~~~~w~Cp~C~~~~ 341 (444)
.|.||.+--..-...-.||.|+ .-|...|+--......+.|||..|....
T Consensus 29 kC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV~d~~yc~ectr~e 79 (110)
T KOG1705|consen 29 KCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGVSDAYYCKECTRQE 79 (110)
T ss_pred cccccccccccceeeeeehhcCCccccCceEEecCCcccchHHHHHHHhhc
Confidence 5888887555443566799999 6677788654444455789999998443
No 66
>KOG3054|consensus
Probab=46.26 E-value=63 Score=32.83 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=4.9
Q ss_pred CCccccccccc
Q psy5823 313 DAWYHWVCVGL 323 (444)
Q Consensus 313 ~~WfH~~CvG~ 323 (444)
++.+|+---|+
T Consensus 233 nriq~~l~eg~ 243 (299)
T KOG3054|consen 233 NRIQELLAEGL 243 (299)
T ss_pred HHHHHHHHhhh
Confidence 34445444443
No 67
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=45.72 E-value=8.5 Score=31.16 Aligned_cols=44 Identities=20% Similarity=0.477 Sum_probs=26.8
Q ss_pred eccccCCCCCC---------CCCeeecCCCCCcccccccccCCCCCCCceecCCCC
Q psy5823 292 ICPACGVQDDG---------SLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 338 (444)
Q Consensus 292 ~C~VC~~~ddg---------~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~ 338 (444)
.|.||..+..+ +...|.=..|+-.||..|+.--... ...||.|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ---NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT---SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc---CCcCCCCC
Confidence 38899865411 1134444569999999999743331 23888885
No 68
>KOG1473|consensus
Probab=45.09 E-value=3.2 Score=49.09 Aligned_cols=53 Identities=17% Similarity=0.176 Sum_probs=41.1
Q ss_pred eeccccCCCCCCCCCeeecCC-CCCcccc-cccccCCC---CCCCceecCCCCCccccchhh
Q psy5823 291 WICPACGVQDDGSLPMIGCDG-CDAWYHW-VCVGLVAE---PETSDWFCPKCSKVDEGSRKE 347 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~-C~~WfH~-~CvG~~~~---~~~~~w~Cp~C~~~~~~~~k~ 347 (444)
..|.||+. |+ +.++|++ |...||+ .|++-+.- ..++.|+|+.|...+++....
T Consensus 429 rrl~Ie~~--de--t~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM~lT~~ 486 (1414)
T KOG1473|consen 429 RRLRIEGM--DE--TLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQMGLTEE 486 (1414)
T ss_pred eeeEEecC--CC--cEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhccchhh
Confidence 46888886 54 4999998 9999999 99993322 677889999999777665433
No 69
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=44.07 E-value=6.1 Score=32.11 Aligned_cols=26 Identities=23% Similarity=0.742 Sum_probs=16.2
Q ss_pred eeccccCC---------CCCCCCCeeecCCCCCcc
Q psy5823 291 WICPACGV---------QDDGSLPMIGCDGCDAWY 316 (444)
Q Consensus 291 ~~C~VC~~---------~ddg~~~mI~CD~C~~Wf 316 (444)
+.|.+|+. .+..+..+|+|++|..|+
T Consensus 5 FTC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~H 39 (66)
T PF05180_consen 5 FTCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNRH 39 (66)
T ss_dssp EEETTTTEEEEEEEEHHHHHTSEEEEE-TTS--EE
T ss_pred EEcCCCCCccceeeCHHHHhCCeEEEECCCCccee
Confidence 56888973 234445899999999973
No 70
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=43.94 E-value=17 Score=37.55 Aligned_cols=38 Identities=29% Similarity=0.737 Sum_probs=25.6
Q ss_pred ceeccccCCCC---------CCCCCeeecCCCCCcccccccccCCCCCCCceecCCCC
Q psy5823 290 VWICPACGVQD---------DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 338 (444)
Q Consensus 290 ~~~C~VC~~~d---------dg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~ 338 (444)
..+|+|||..- .++.-++.|..|...+|+. .-.|+.|.
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~-----------R~~C~~Cg 233 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV-----------RVKCSNCE 233 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc-----------CccCCCCC
Confidence 45899999642 2233788899999555532 34688887
No 71
>KOG1671|consensus
Probab=43.02 E-value=20 Score=35.13 Aligned_cols=50 Identities=26% Similarity=0.524 Sum_probs=34.2
Q ss_pred ccccccccCCCCCCCceecC-CCCCccccchhhhhhhhcccCccccccccccccccC
Q psy5823 316 YHWVCVGLVAEPETSDWFCP-KCSKVDEGSRKEKKKRGRKKKTHQDIIMSTYRFERD 371 (444)
Q Consensus 316 fH~~CvG~~~~~~~~~w~Cp-~C~~~~~~~~k~kr~~kRkkk~~q~~~mstyRyErd 371 (444)
-|+.|+-+......+.|||| +|..-...+ +-|+......-..|+|.|...
T Consensus 154 ThLGCVp~~~AGd~gg~~CPCHGSHYdasG------RIrkGPAPlnlevP~y~F~~~ 204 (210)
T KOG1671|consen 154 THLGCVPIANAGDYGGYYCPCHGSHYDASG------RIRKGPAPLNLEVPTYEFTSE 204 (210)
T ss_pred ccccccccccccccCceecccccccccccC------ceecCCCCCccCCCceecccC
Confidence 48999988777777889999 354333222 335566667777889988653
No 72
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=41.06 E-value=4.5e+02 Score=27.61 Aligned_cols=13 Identities=0% Similarity=0.161 Sum_probs=5.9
Q ss_pred hhhcchhceeccc
Q psy5823 90 KEYSKVKDVELGV 102 (444)
Q Consensus 90 ~~~~~~~~~~~~~ 102 (444)
..|.+|+++.-+.
T Consensus 50 ~~~~~~~~q~~~~ 62 (346)
T TIGR02794 50 QQANRIQQQKKPA 62 (346)
T ss_pred hhhhhhhhhhccc
Confidence 3444444444433
No 73
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=40.95 E-value=21 Score=36.92 Aligned_cols=38 Identities=32% Similarity=0.823 Sum_probs=25.9
Q ss_pred ceeccccCCCC----------CCCCCeeecCCCCCcccccccccCCCCCCCceecCCCC
Q psy5823 290 VWICPACGVQD----------DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 338 (444)
Q Consensus 290 ~~~C~VC~~~d----------dg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~ 338 (444)
..+|+|||..- .++.-++.|..|..-+|+. .-.|+.|.
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-----------R~~C~~Cg 231 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-----------RVKCSHCE 231 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-----------CccCCCCC
Confidence 45899999532 1233689999999555632 34688887
No 74
>KOG3779|consensus
Probab=40.52 E-value=45 Score=36.57 Aligned_cols=54 Identities=39% Similarity=0.528 Sum_probs=26.1
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCC-CCCCCCC------CCCCCcccccc
Q psy5823 28 SVAGPGLIPRLPPMLQHPLIPQPLVHPPGTPPPSKM-KDKVSPK------DKTSPKEKMSS 81 (444)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~~~~~~~ 81 (444)
+|||-|..|-.--.|.-|+.-.+...|-++|.-+|- +++++|+ |-|||-.+|+|
T Consensus 470 ~~~GG~~~PP~~~~F~~~~~~~~~~~~~~~~S~~~~~k~r~~~~~~D~~~~~~S~~t~~sS 530 (737)
T KOG3779|consen 470 SATGGFTTPPFRHPFPLPLMAYPFQSPLGAPSGSFSGKDRASPESLDLTRDTTSLRTKMSS 530 (737)
T ss_pred cccCCCcCCCccCCccchhhhccccCccCCCcccccCCcccCcchhhhhcccccccccccC
Confidence 467777766222222233333344455555544432 3556554 34555555554
No 75
>KOG4628|consensus
Probab=39.36 E-value=20 Score=37.71 Aligned_cols=47 Identities=19% Similarity=0.387 Sum_probs=32.2
Q ss_pred eeccccCCCCCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCc
Q psy5823 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 340 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~ 340 (444)
+.|.||...+-.+. -|-==-|.--||..|+++....- .-+||.|...
T Consensus 230 ~~CaIClEdY~~Gd-klRiLPC~H~FH~~CIDpWL~~~--r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKGD-KLRILPCSHKFHVNCIDPWLTQT--RTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccCC-eeeEecCCCchhhccchhhHhhc--CccCCCCCCc
Confidence 56889998764331 22225689999999999876521 2479999853
No 76
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=39.24 E-value=13 Score=26.42 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=26.0
Q ss_pred ceeccccCCCCCCCCCeeecCCCCCccccccccc
Q psy5823 290 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL 323 (444)
Q Consensus 290 ~~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~ 323 (444)
..+|.+|+..-.+....+.|..|..-.|..|+..
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 3479999987654312678999999999999764
No 77
>COG1773 Rubredoxin [Energy production and conversion]
Probab=38.86 E-value=25 Score=27.76 Aligned_cols=41 Identities=32% Similarity=0.714 Sum_probs=23.9
Q ss_pred eeccccCCCCCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCC
Q psy5823 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 339 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~ 339 (444)
..|.+|+-.++.+.-.--|+.|. |-.-...+++|+||.|..
T Consensus 4 ~~C~~CG~vYd~e~Gdp~~gi~p--------gT~fedlPd~w~CP~Cg~ 44 (55)
T COG1773 4 WRCSVCGYVYDPEKGDPRCGIAP--------GTPFEDLPDDWVCPECGV 44 (55)
T ss_pred eEecCCceEeccccCCccCCCCC--------CCchhhCCCccCCCCCCC
Confidence 46888987665442222233333 333234457899999984
No 78
>KOG2041|consensus
Probab=38.51 E-value=26 Score=40.35 Aligned_cols=48 Identities=25% Similarity=0.679 Sum_probs=35.2
Q ss_pred ceeccccCCCCCCCCCeeecCCCCCcccccccccCCC-CCCCceecCCCCCc
Q psy5823 290 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 340 (444)
Q Consensus 290 ~~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~-~~~~~w~Cp~C~~~ 340 (444)
.+.|.+|+-+-++. -++|..|..-| -.|+.--.. ..+..|+|+.|...
T Consensus 1117 ~vdc~~cg~~i~~~--~~~c~ec~~kf-P~CiasG~pIt~~~fWlC~~CkH~ 1165 (1189)
T KOG2041|consen 1117 KVDCSVCGAKIDPY--DLQCSECQTKF-PVCIASGRPITDNIFWLCPRCKHR 1165 (1189)
T ss_pred ceeeeecCCcCCcc--CCCChhhcCcC-ceeeccCCccccceEEEccccccc
Confidence 46799999877665 68999999766 567654333 44558999999843
No 79
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=36.89 E-value=19 Score=25.88 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=25.7
Q ss_pred ceeccccCCCCCCC-CCeeecCCCCCccccccccc
Q psy5823 290 VWICPACGVQDDGS-LPMIGCDGCDAWYHWVCVGL 323 (444)
Q Consensus 290 ~~~C~VC~~~ddg~-~~mI~CD~C~~WfH~~CvG~ 323 (444)
..+|.+|+....+. ...+.|+.|....|..|+..
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 34699998765541 25778999999999999764
No 80
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=36.59 E-value=19 Score=25.77 Aligned_cols=11 Identities=18% Similarity=1.005 Sum_probs=6.7
Q ss_pred CCCceecCCCC
Q psy5823 328 ETSDWFCPKCS 338 (444)
Q Consensus 328 ~~~~w~Cp~C~ 338 (444)
.++.|||..|-
T Consensus 22 ~dG~~yC~~cG 32 (36)
T PF11781_consen 22 DDGFYYCDRCG 32 (36)
T ss_pred cCCEEEhhhCc
Confidence 34667776665
No 81
>PF12773 DZR: Double zinc ribbon
Probab=36.05 E-value=33 Score=25.21 Aligned_cols=8 Identities=50% Similarity=1.547 Sum_probs=3.7
Q ss_pred eccccCCC
Q psy5823 292 ICPACGVQ 299 (444)
Q Consensus 292 ~C~VC~~~ 299 (444)
+|..|+.+
T Consensus 14 fC~~CG~~ 21 (50)
T PF12773_consen 14 FCPHCGTP 21 (50)
T ss_pred CChhhcCC
Confidence 45445443
No 82
>KOG0132|consensus
Probab=36.00 E-value=86 Score=36.45 Aligned_cols=38 Identities=34% Similarity=0.720 Sum_probs=19.2
Q ss_pred CCCCCCCCCCCCCCCcC----CCCCCCCCCCCCCCCCCCCCC
Q psy5823 32 PGLIPRLPPMLQHPLIP----QPLVHPPGTPPPSKMKDKVSP 69 (444)
Q Consensus 32 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 69 (444)
||+.|.-||.+.+|-.+ -+-..||+.|||..+...+-|
T Consensus 614 Pgf~PnpPpP~~~Pg~np~~pPpg~~pP~~pPp~~Ppm~~pp 655 (894)
T KOG0132|consen 614 PGFVPNPPPPPLRPGYNPYPPPPGFMPPTSPPPGQPPMGIPP 655 (894)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCC
Confidence 45555444444443332 333445555666666666666
No 83
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=35.77 E-value=17 Score=26.79 Aligned_cols=41 Identities=24% Similarity=0.541 Sum_probs=18.7
Q ss_pred ccccCCCCCCCCCeeecC--CCCCcccccccccCCCCCCCceecCCC
Q psy5823 293 CPACGVQDDGSLPMIGCD--GCDAWYHWVCVGLVAEPETSDWFCPKC 337 (444)
Q Consensus 293 C~VC~~~ddg~~~mI~CD--~C~~WfH~~CvG~~~~~~~~~w~Cp~C 337 (444)
|.+|...--- -+.|. .|+.-+|..|+.--....... .||.|
T Consensus 1 C~~C~~iv~~---G~~C~~~~C~~r~H~~C~~~y~r~~~~~-~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQ---GQRCSNRDCNVRLHDDCFKKYFRHRSNP-KCPNC 43 (43)
T ss_dssp -TTT-SB-SS---SEE-SS--S--EE-HHHHHHHTTT-SS--B-TTT
T ss_pred CcccchhHee---eccCCCCccCchHHHHHHHHHHhcCCCC-CCcCC
Confidence 4566653332 36788 599889999987544422222 77776
No 84
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=35.54 E-value=26 Score=32.03 Aligned_cols=27 Identities=30% Similarity=0.837 Sum_probs=19.9
Q ss_pred CceeccccCCCC-----CCCCCeeecCCCCCc
Q psy5823 289 QVWICPACGVQD-----DGSLPMIGCDGCDAW 315 (444)
Q Consensus 289 ~~~~C~VC~~~d-----dg~~~mI~CD~C~~W 315 (444)
..+.|..|++|+ ++...++-|+.|+.+
T Consensus 96 ~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 127 (133)
T TIGR00311 96 KYVICRECNRPDTRIIKEGRVSLLKCEACGAK 127 (133)
T ss_pred heEECCCCCCCCcEEEEeCCeEEEecccCCCC
Confidence 357899999987 334356789999865
No 85
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=34.52 E-value=22 Score=35.21 Aligned_cols=35 Identities=23% Similarity=0.631 Sum_probs=25.2
Q ss_pred CeeecCCCCCcccccccccCCCCCCCceecCCCCCccc
Q psy5823 305 PMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 342 (444)
Q Consensus 305 ~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~~ 342 (444)
.-|.|-.|.. |..|+.+...+.+ .|+|++|...+.
T Consensus 191 ~alIC~~C~h--hngl~~~~ek~~~-efiC~~Cn~~n~ 225 (251)
T COG5415 191 KALICPQCHH--HNGLYRLAEKPII-EFICPHCNHKND 225 (251)
T ss_pred hhhccccccc--cccccccccccch-heecccchhhcC
Confidence 3566777764 8888877665443 899999986653
No 86
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=33.72 E-value=29 Score=30.29 Aligned_cols=47 Identities=23% Similarity=0.512 Sum_probs=30.1
Q ss_pred eeccccCCCCCCCCCeeec------CCC---CCcccccccccCCC------CCCCceecCCCCC
Q psy5823 291 WICPACGVQDDGSLPMIGC------DGC---DAWYHWVCVGLVAE------PETSDWFCPKCSK 339 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~C------D~C---~~WfH~~CvG~~~~------~~~~~w~Cp~C~~ 339 (444)
..|..|.+-..+. .+.| ..| ..-|-..||-.... .....|.||.|..
T Consensus 8 ~~CHqCrqKt~~~--~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDF--KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCC--ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 4688888755544 4556 566 66677777532222 3467899999974
No 87
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=33.62 E-value=29 Score=26.32 Aligned_cols=14 Identities=36% Similarity=1.028 Sum_probs=8.0
Q ss_pred CCCCceecCCCCCc
Q psy5823 327 PETSDWFCPKCSKV 340 (444)
Q Consensus 327 ~~~~~w~Cp~C~~~ 340 (444)
..+++|.||.|...
T Consensus 30 ~Lp~~w~CP~C~a~ 43 (47)
T PF00301_consen 30 DLPDDWVCPVCGAP 43 (47)
T ss_dssp GS-TT-B-TTTSSB
T ss_pred HCCCCCcCcCCCCc
Confidence 34578999999843
No 88
>KOG1984|consensus
Probab=33.51 E-value=89 Score=36.82 Aligned_cols=55 Identities=25% Similarity=0.407 Sum_probs=30.7
Q ss_pred cccccCCCCCCCCCCCCCC-CCCCCCCCC--------CcCCCCCCCCCCC-CCCCCCCCCCCCCCCC
Q psy5823 18 MFPFQFSPFPSVAGPGLIP-RLPPMLQHP--------LIPQPLVHPPGTP-PPSKMKDKVSPKDKTS 74 (444)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 74 (444)
|-|=++..||. ||+.+| .+|+|...| ++|-+..+++++| +|+-.-+..-|.-+.+
T Consensus 155 f~p~~~~~~p~--~p~~~~p~~p~~~s~p~~~~~~~~a~pp~a~~~~p~p~~p~p~~pg~~P~~~~s 219 (1007)
T KOG1984|consen 155 FPPGPQGGGPP--GPAMVPPSGPLMVSQPARASGMPPAFPPGAQMQPPPPGAPRPSGPGYFPQSFSS 219 (1007)
T ss_pred CCCCccCCCCC--CCccCCCCCCcCCCCCCcCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 33444445566 777777 777777766 3344444444433 4455555556666555
No 89
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=33.49 E-value=34 Score=38.77 Aligned_cols=49 Identities=24% Similarity=0.553 Sum_probs=33.9
Q ss_pred eccccCCCCCCCCCeeecCCCCCc-ccccccccCCCCCCCceecCCCCCccc
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDAW-YHWVCVGLVAEPETSDWFCPKCSKVDE 342 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~W-fH~~CvG~~~~~~~~~w~Cp~C~~~~~ 342 (444)
.|+.|+..-..+ .-.|..|+.- -|..|..-....+.+.-||+.|.....
T Consensus 3 ~Cp~Cg~~n~~~--akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFENPNN--NRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcCCCC--CccccccCCCCCCCcCCCCCCCCCcccccccccCCccc
Confidence 588888764444 5688888854 346676665566667789999986543
No 90
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=33.44 E-value=9.5 Score=32.11 Aligned_cols=48 Identities=23% Similarity=0.603 Sum_probs=21.5
Q ss_pred eeccccCC----CCCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCcc
Q psy5823 291 WICPACGV----QDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 341 (444)
Q Consensus 291 ~~C~VC~~----~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~ 341 (444)
-.|+||+. ..+|+ ..|.|..|..-.--.|+-.. ...+.-.|+.|...+
T Consensus 10 qiCqiCGD~VGl~~~Ge-~FVAC~eC~fPvCr~CyEYE--rkeg~q~CpqCkt~y 61 (80)
T PF14569_consen 10 QICQICGDDVGLTENGE-VFVACHECAFPVCRPCYEYE--RKEGNQVCPQCKTRY 61 (80)
T ss_dssp -B-SSS--B--B-SSSS-B--S-SSS-----HHHHHHH--HHTS-SB-TTT--B-
T ss_pred cccccccCccccCCCCC-EEEEEcccCCccchhHHHHH--hhcCcccccccCCCc
Confidence 46999984 34666 89999999987666776443 234567899998444
No 91
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=33.12 E-value=30 Score=31.81 Aligned_cols=28 Identities=36% Similarity=0.897 Sum_probs=20.9
Q ss_pred CceeccccCCCC-----CCCCCeeecCCCCCcc
Q psy5823 289 QVWICPACGVQD-----DGSLPMIGCDGCDAWY 316 (444)
Q Consensus 289 ~~~~C~VC~~~d-----dg~~~mI~CD~C~~Wf 316 (444)
..+.|..|++|+ ++...++-|+.|+.+.
T Consensus 101 ~yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~ 133 (138)
T PRK03988 101 EYVICPECGSPDTKLIKEGRIWVLKCEACGAET 133 (138)
T ss_pred hcEECCCCCCCCcEEEEcCCeEEEEcccCCCCC
Confidence 357899999987 3344677799998754
No 92
>KOG0742|consensus
Probab=32.93 E-value=7.3e+02 Score=27.67 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=13.0
Q ss_pred cccCCCCCCCCCCCCCCC
Q psy5823 20 PFQFSPFPSVAGPGLIPR 37 (444)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (444)
||.||.|++-..|+|-|.
T Consensus 29 ~f~~~~fs~sp~~~~pp~ 46 (630)
T KOG0742|consen 29 RFGFPGFSASPPPPLPPA 46 (630)
T ss_pred CCCCCCCCCCCCCCCCCC
Confidence 889999988655665443
No 93
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=32.63 E-value=14 Score=25.05 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=26.9
Q ss_pred ccccCCCCCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCC
Q psy5823 293 CPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 339 (444)
Q Consensus 293 C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~ 339 (444)
|.+|...... .+....|+-.||..|+...... +...||.|..
T Consensus 2 C~iC~~~~~~---~~~~~~C~H~~c~~C~~~~~~~--~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFRE---PVVLLPCGHVFCRSCIDKWLKS--GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhC---ceEecCCCChhcHHHHHHHHHh--CcCCCCCCCC
Confidence 6788775422 3344568888999998643322 3567998873
No 94
>KOG1244|consensus
Probab=31.87 E-value=15 Score=37.67 Aligned_cols=49 Identities=22% Similarity=0.500 Sum_probs=36.5
Q ss_pred CceeccccCCCC-------CCCCCeeecCCCCCcccccccccCCC----CCCCceecCCCC
Q psy5823 289 QVWICPACGVQD-------DGSLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCS 338 (444)
Q Consensus 289 ~~~~C~VC~~~d-------dg~~~mI~CD~C~~WfH~~CvG~~~~----~~~~~w~Cp~C~ 338 (444)
..-||..|.... -.+ .+|.|..|++--|-+|+..+.. +..-.|.|-.|.
T Consensus 223 Pn~YCDFclgdsr~nkkt~~pe-elvscsdcgrsghpsclqft~nm~~avk~yrwqcieck 282 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPE-ELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECK 282 (336)
T ss_pred CCcccceeccccccccccCCch-hhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeecc
Confidence 346888886422 123 6899999999999999988877 344579888776
No 95
>PLN02400 cellulose synthase
Probab=31.79 E-value=34 Score=40.95 Aligned_cols=48 Identities=25% Similarity=0.625 Sum_probs=36.3
Q ss_pred eeccccCCC----CCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCcc
Q psy5823 291 WICPACGVQ----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 341 (444)
Q Consensus 291 ~~C~VC~~~----ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~ 341 (444)
-.|+|||.. .+|+ ..|.|.-|..-..-.|.-. +...+.=.||+|...+
T Consensus 37 qiCqICGD~VG~t~dGe-~FVAC~eCaFPVCRpCYEY--ERkeGnq~CPQCkTrY 88 (1085)
T PLN02400 37 QICQICGDDVGVTETGD-VFVACNECAFPVCRPCYEY--ERKDGTQCCPQCKTRY 88 (1085)
T ss_pred ceeeecccccCcCCCCC-EEEEEccCCCccccchhhe--ecccCCccCcccCCcc
Confidence 379999853 4677 8899999998777777733 3556778999998655
No 96
>KOG3477|consensus
Probab=31.63 E-value=39 Score=29.16 Aligned_cols=37 Identities=16% Similarity=0.507 Sum_probs=29.7
Q ss_pred ccchhhHHHHHHhhhcCcccccCCCChhhHhhcCChhhHHHHHhhHhhhhcc
Q psy5823 379 SACAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAPQCEALKNTFFECKRS 430 (444)
Q Consensus 379 saCk~~r~dL~~CL~~SdCv~~~~~t~~eCL~~~~~~~C~~L~~~f~eCKR~ 430 (444)
.-|.......+.||.... .-..+|..|-..||+||..
T Consensus 28 geC~~em~eYl~Cl~~k~---------------e~~~eCR~laK~YlqCRMd 64 (97)
T KOG3477|consen 28 GECTAEMKEYLGCLKSKA---------------ENSEECRLLAKKYLQCRMD 64 (97)
T ss_pred cccHHHHHHHHHHHHHHH---------------HhHHHHHHHHHHHHHHhhh
Confidence 479999999998887763 1245999999999999953
No 97
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=31.47 E-value=17 Score=27.43 Aligned_cols=46 Identities=24% Similarity=0.579 Sum_probs=24.8
Q ss_pred eccccCCCCCCCCCeee-cC--CCCCcccccccccCCCCCCCceecCCCC
Q psy5823 292 ICPACGVQDDGSLPMIG-CD--GCDAWYHWVCVGLVAEPETSDWFCPKCS 338 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~-CD--~C~~WfH~~CvG~~~~~~~~~w~Cp~C~ 338 (444)
.|.||...++++..+|. |. +--.|+|..|+.--.... ..-.|+.|.
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~-~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINES-GNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHc-CCCcCCCCC
Confidence 37788763322223444 32 223799999986443311 123777773
No 98
>PHA02862 5L protein; Provisional
Probab=30.82 E-value=15 Score=34.36 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=38.5
Q ss_pred eccccCCCCCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCccccchh
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDEGSRK 346 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~~~~~k 346 (444)
.|-||...++.+..--.|-+-..|-|..|+.--.. ....-+|+.|.........
T Consensus 4 iCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn-~S~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 4 ICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWIN-YSKKKECNLCKTKYNIKKT 57 (156)
T ss_pred EEEEecCcCCCCcccccccCcchhHHHHHHHHHHh-cCCCcCccCCCCeEEEEEc
Confidence 68888887655434555777889999999875443 2345799999987765433
No 99
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=30.76 E-value=24 Score=24.42 Aligned_cols=20 Identities=40% Similarity=1.119 Sum_probs=7.6
Q ss_pred eccccCCCC---CCCCCeeecCCCC
Q psy5823 292 ICPACGVQD---DGSLPMIGCDGCD 313 (444)
Q Consensus 292 ~C~VC~~~d---dg~~~mI~CD~C~ 313 (444)
.|+.|+..+ |+. ++.|..|.
T Consensus 4 ~Cp~C~se~~y~D~~--~~vCp~C~ 26 (30)
T PF08274_consen 4 KCPLCGSEYTYEDGE--LLVCPECG 26 (30)
T ss_dssp --TTT-----EE-SS--SEEETTTT
T ss_pred CCCCCCCcceeccCC--EEeCCccc
Confidence 367777644 333 55566665
No 100
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=30.37 E-value=26 Score=32.91 Aligned_cols=27 Identities=26% Similarity=0.914 Sum_probs=15.7
Q ss_pred eccccCCCCCCCCCeeecCCCCCcccccc
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVC 320 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~WfH~~C 320 (444)
.|..||-.+... .|.|..|+.||-..-
T Consensus 2 aC~YCG~~~p~~--vv~C~~c~kWFCNg~ 28 (152)
T PF09416_consen 2 ACAYCGIHDPSC--VVKCNTCNKWFCNGR 28 (152)
T ss_dssp S-TTT----CCC--EEEETTTTEEEES--
T ss_pred CccccCCCCccc--EeEcCCCCcEeecCC
Confidence 367788654555 999999999985443
No 101
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=29.81 E-value=34 Score=23.66 Aligned_cols=10 Identities=40% Similarity=1.451 Sum_probs=8.0
Q ss_pred CceecCCCCC
Q psy5823 330 SDWFCPKCSK 339 (444)
Q Consensus 330 ~~w~Cp~C~~ 339 (444)
..|.||.|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 4699999974
No 102
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=29.62 E-value=58 Score=35.89 Aligned_cols=19 Identities=42% Similarity=0.630 Sum_probs=12.2
Q ss_pred CCCCCCCCC-CCCCCCCcCCC
Q psy5823 31 GPGLIPRLP-PMLQHPLIPQP 50 (444)
Q Consensus 31 ~~~~~~~~~-~~~~~~~~~~~ 50 (444)
-||+.|..| |||.||+ ||.
T Consensus 547 ~~~Y~P~~PQ~~~~~PS-P~~ 566 (654)
T COG5180 547 MGMYMPFQPQPMFYHPS-PQM 566 (654)
T ss_pred cccccCCCCCcccccCC-CCC
Confidence 456666655 6777777 654
No 103
>PLN02436 cellulose synthase A
Probab=28.99 E-value=36 Score=40.73 Aligned_cols=48 Identities=27% Similarity=0.655 Sum_probs=36.6
Q ss_pred eeccccCCC----CCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCcc
Q psy5823 291 WICPACGVQ----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 341 (444)
Q Consensus 291 ~~C~VC~~~----ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~ 341 (444)
-.|+|||.. .+|+ ..|.|.-|..-..-.|... +...+.=.||+|...+
T Consensus 37 ~iCqICGD~Vg~t~dGe-~FVACn~C~fpvCr~Cyey--er~eg~~~Cpqckt~Y 88 (1094)
T PLN02436 37 QTCQICGDEIELTVDGE-PFVACNECAFPVCRPCYEY--ERREGNQACPQCKTRY 88 (1094)
T ss_pred ccccccccccCcCCCCC-EEEeeccCCCccccchhhh--hhhcCCccCcccCCch
Confidence 379999853 3666 8899999998777788733 3556778999998655
No 104
>KOG3799|consensus
Probab=28.67 E-value=23 Score=32.91 Aligned_cols=51 Identities=24% Similarity=0.463 Sum_probs=33.4
Q ss_pred eccccCCCCCCCCCeeecCCCCCcccccccccCCC-CCCCceecCCCCCccc
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVDE 342 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~-~~~~~w~Cp~C~~~~~ 342 (444)
.|.||...-..+..--.|.-|..-|...|-|-... ...-.|+|..|.+...
T Consensus 67 tC~IC~KTKFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~ 118 (169)
T KOG3799|consen 67 TCGICHKTKFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQE 118 (169)
T ss_pred chhhhhhcccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHH
Confidence 69999875432212345777887777778764333 3445799999986553
No 105
>KOG2412|consensus
Probab=28.50 E-value=2.2e+02 Score=32.02 Aligned_cols=7 Identities=14% Similarity=0.197 Sum_probs=2.7
Q ss_pred hhceecc
Q psy5823 95 VKDVELG 101 (444)
Q Consensus 95 ~~~~~~~ 101 (444)
|....+|
T Consensus 148 i~~~~~p 154 (591)
T KOG2412|consen 148 ILNSPLP 154 (591)
T ss_pred hhcCCCh
Confidence 3333333
No 106
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5.
Probab=27.82 E-value=40 Score=29.77 Aligned_cols=26 Identities=35% Similarity=0.981 Sum_probs=18.8
Q ss_pred CceeccccCCCC-----CCCCCeeecCCCCC
Q psy5823 289 QVWICPACGVQD-----DGSLPMIGCDGCDA 314 (444)
Q Consensus 289 ~~~~C~VC~~~d-----dg~~~mI~CD~C~~ 314 (444)
..+.|..|++|+ ++...++-|+.|+.
T Consensus 79 ~yVlC~~C~spdT~l~k~~r~~~l~C~aCGa 109 (110)
T smart00653 79 EYVLCPECGSPDTELIKENRLFFLKCEACGA 109 (110)
T ss_pred hcEECCCCCCCCcEEEEeCCeEEEEccccCC
Confidence 457899999987 33335666998875
No 107
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=27.34 E-value=36 Score=40.66 Aligned_cols=47 Identities=30% Similarity=0.711 Sum_probs=36.0
Q ss_pred eccccCCC----CCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCcc
Q psy5823 292 ICPACGVQ----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 341 (444)
Q Consensus 292 ~C~VC~~~----ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~ 341 (444)
.|+|||.. .+|+ ..|.|.-|..-..-.|.-. +...+.=.||+|...+
T Consensus 19 iCqICGD~vg~~~~Ge-~FVAC~eC~FPVCrpCYEY--Er~eG~q~CPqCktrY 69 (1079)
T PLN02638 19 VCQICGDNVGKTVDGE-PFVACDVCAFPVCRPCYEY--ERKDGNQSCPQCKTKY 69 (1079)
T ss_pred eeeecccccCcCCCCC-EEEEeccCCCccccchhhh--hhhcCCccCCccCCch
Confidence 79999853 3666 8899999998777778733 3556778999998655
No 108
>PF12316 Dsh_C: Segment polarity protein dishevelled (Dsh) C terminal; InterPro: IPR024580 Wnt proteins constitute a large family of secreted signalling molecules that are involved in intercellular signalling during development. The name derives from the first 2 members of the family to be discovered: int-1 (mouse) and wingless (Wg) (Drosophila) []. It is now recognised that Wnt signalling controls many cell fate decisions in a variety of different organisms, including mammals. Wnt signalling has been implicated in tumourigenesis, early mesodermal patterning of the embryo, morphogenesis of the brain and kidneys, regulation of mammary gland proliferation and Alzheimer's disease []. Wnt signal transduction proceeds initially via binding to their cell surface receptors - the so-called frizzled proteins. This activates the signalling functions of B-catenin and regulates the expression of specific genes important in development []. More recently, however, several non-canonical Wnt signalling pathways have been elucidated that act independently of B-catenin. In both cases, the transduction mechanism requires dishevelled protein (Dsh), a cytoplasmic phosphoprotein that acts directly downstream of frizzled []. In addition to its role in Wnt signalling, Dsh is also involved in generating planar polarity in Drosophila and has been implicated in the Notch signal transduction cascade. Three human and mouse homologues of Dsh have been cloned (DVL-1 to 3); it is believed that these proteins, like their Drosophila counterpart, are involved in signal transduction. Human and murine orthologues share more than 95% sequence identity and are each 40-50% identical to Drosophila Dsh. Sequence similarity amongst Dsh proteins is concentrated around three conserved domains: at the N terminus lies a DIX domain (mutations mapping to this region reduce or completely disrupt Wg signalling); a PDZ (or DHR) domain, often found in proteins involved in protein-protein interactions, lies within the central portion of the protein (point mutations within this module have been shown to have little effect on Wg-mediated signal transduction); and a DEP domain is located towards the C terminus and is conserved among a set of proteins that regulate various GTPases (whilst genetic and molecular assays have shown this module to be dispensable for Wg signalling, it is thought to be important in planar polarity signalling in flies []). This entry represents a domain found in the C-terminal of Dsh proteins.; PDB: 3ML6_D.
Probab=26.95 E-value=21 Score=34.86 Aligned_cols=45 Identities=36% Similarity=0.681 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCC
Q psy5823 25 PFPSVAGPGLIPRLPPMLQHPLIPQPLVHPPGTPPPSKMKDKVSPK 70 (444)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (444)
.-.+...|||.|...+|..-+..+.+..+|||.||.+.|- .|-|+
T Consensus 146 ~~~s~~ppGlpp~y~~~~~~~~~~~~~~~pPGaPP~ReLa-sVPPE 190 (203)
T PF12316_consen 146 SHSSYGPPGLPPPYNPPMLPPKPPPPSPGPPGAPPVRELA-SVPPE 190 (203)
T ss_dssp ----------------------------------------------
T ss_pred CCcCCCCCCCCCCCCccccccCCCCCCCCCCCCCCccccc-cCChh
Confidence 3455667898887777766666666666788888888764 45444
No 109
>COG4499 Predicted membrane protein [Function unknown]
Probab=25.77 E-value=1e+02 Score=33.21 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=12.0
Q ss_pred hhHHhhhhhHHHHHHHHHhhhh
Q psy5823 126 SIKKDKKTHKKKEKEKIKKKKD 147 (444)
Q Consensus 126 e~~~~~~~~~~k~~~~~~~k~~ 147 (444)
+++.+..+.+.++.+..++=.+
T Consensus 355 evksn~~lsg~~r~e~lk~~n~ 376 (434)
T COG4499 355 EVKSNTDLSGDKRQELLKEYNK 376 (434)
T ss_pred HHhcccCCCchHHHHHHHHHHH
Confidence 3444556666666666654333
No 110
>COG2835 Uncharacterized conserved protein [Function unknown]
Probab=25.70 E-value=54 Score=26.34 Aligned_cols=29 Identities=24% Similarity=0.543 Sum_probs=20.6
Q ss_pred CceeccccCCCC--CCCCCeeecCCCCCccc
Q psy5823 289 QVWICPACGVQD--DGSLPMIGCDGCDAWYH 317 (444)
Q Consensus 289 ~~~~C~VC~~~d--dg~~~mI~CD~C~~WfH 317 (444)
++..|++|..+- +.+...+.|-.|+.||-
T Consensus 7 eiLaCP~~kg~L~~~~~~~~L~c~~~~~aYp 37 (60)
T COG2835 7 EILACPVCKGPLVYDEEKQELICPRCKLAYP 37 (60)
T ss_pred eeeeccCcCCcceEeccCCEEEecccCceee
Confidence 457799998652 22235888999999985
No 111
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Probab=25.51 E-value=46 Score=32.18 Aligned_cols=28 Identities=36% Similarity=0.888 Sum_probs=19.6
Q ss_pred CceeccccCCCC-----CCCCCeeecCCCCCcc
Q psy5823 289 QVWICPACGVQD-----DGSLPMIGCDGCDAWY 316 (444)
Q Consensus 289 ~~~~C~VC~~~d-----dg~~~mI~CD~C~~Wf 316 (444)
..+.|..|++|+ ++...++-|+.|+.+.
T Consensus 97 ~yV~C~~C~~pdT~l~k~~~~~~l~C~aCGa~~ 129 (201)
T PRK12336 97 EYVICSECGLPDTRLVKEDRVLMLRCDACGAHR 129 (201)
T ss_pred heEECCCCCCCCcEEEEcCCeEEEEcccCCCCc
Confidence 357899999987 3333566788888754
No 112
>PLN02189 cellulose synthase
Probab=24.81 E-value=47 Score=39.66 Aligned_cols=48 Identities=25% Similarity=0.594 Sum_probs=36.7
Q ss_pred eeccccCCC----CCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCcc
Q psy5823 291 WICPACGVQ----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 341 (444)
Q Consensus 291 ~~C~VC~~~----ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~ 341 (444)
-.|+||+.. .+|+ ..|.|.-|..-..-.|.-. +...+.=.||+|...+
T Consensus 35 ~~C~iCgd~vg~~~~g~-~fvaC~~C~fpvCr~Cyey--er~eg~q~CpqCkt~Y 86 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGD-LFVACNECGFPVCRPCYEY--ERREGTQNCPQCKTRY 86 (1040)
T ss_pred ccccccccccCcCCCCC-EEEeeccCCCccccchhhh--hhhcCCccCcccCCch
Confidence 379999864 4666 7899999998777778733 3556778999998655
No 113
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=24.54 E-value=25 Score=35.39 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=0.0
Q ss_pred CCcccccCCCCCCCCCCCC
Q psy5823 16 APMFPFQFSPFPSVAGPGL 34 (444)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~ 34 (444)
++.+++ ||+.|...+|||
T Consensus 166 S~~n~~-~Pp~PPpp~P~l 183 (264)
T PF06003_consen 166 SQWNSQ-FPPPPPPPPPGL 183 (264)
T ss_dssp -------------------
T ss_pred cccccc-CCCCCCCCCCCc
Confidence 344554 666665445554
No 114
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.38 E-value=47 Score=39.62 Aligned_cols=48 Identities=27% Similarity=0.664 Sum_probs=36.5
Q ss_pred eeccccCCC----CCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCcc
Q psy5823 291 WICPACGVQ----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 341 (444)
Q Consensus 291 ~~C~VC~~~----ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~ 341 (444)
-.|+|||.. .+|+ ..|.|.-|..-..-.|... +...+.=.||+|....
T Consensus 16 ~~c~iCGd~vg~~~~Ge-~FVAC~eC~fpvCr~cyey--e~~~g~~~cp~c~t~y 67 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQ-PFVACHVCGFPVCKPCYEY--ERSEGNQCCPQCNTRY 67 (1044)
T ss_pred chhhccccccCcCCCCC-EEEEeccCCCccccchhhh--hhhcCCccCCccCCch
Confidence 479999853 3666 8899999998777788733 3456678999998655
No 115
>KOG1886|consensus
Probab=23.09 E-value=1.1e+02 Score=33.66 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=64.5
Q ss_pred ccCCCCCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCccccchhhhhhhhcccCccccccccccccccCCCc
Q psy5823 295 ACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDEGSRKEKKKRGRKKKTHQDIIMSTYRFERDPSE 374 (444)
Q Consensus 295 VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~~~~~k~kr~~kRkkk~~q~~~mstyRyErdpse 374 (444)
.|++...+...+.+|..|+.|+|..|++.... ....+|..|.... ...|.-......++..+ ..
T Consensus 175 ~~~k~e~d~~~~kt~~~~~~~~~p~~~~t~~~--~~~~~~~~~s~~~--------~~~r~ss~~~~~~~e~~------~~ 238 (464)
T KOG1886|consen 175 DGQKLEIDMLVPKTGPRRGTLPDPKKVQTLNA--AASKRSQQKSEIS--------SLSRASSSVDGEILESF------DL 238 (464)
T ss_pred cccccCCccchhhhcccCCCCCCccccccccc--cccceeccccccc--------cccccccccccccccCC------CC
Confidence 77877766558888999999999999988764 3457888875433 11111111222222221 11
Q ss_pred ccccccchhhHHHHHHhhhcCcccccCCCChhh--Hhhc-CChhhHHHHHhhHhh
Q psy5823 375 LVDKSACAGSRADLKLCLLETDCVQVDRKTPRQ--CLRE-GLAPQCEALKNTFFE 426 (444)
Q Consensus 375 L~d~saCk~~r~dL~~CL~~SdCv~~~~~t~~e--CL~~-~~~~~C~~L~~~f~e 426 (444)
+..-+.-..+...|+--+..-.|.-.+..++.+ |+-. ..++.|.+|..++..
T Consensus 239 ~t~~~~~~k~~g~~~~~v~~~~~~~s~~~~~~~~~~~~p~~~v~~~~~le~~s~~ 293 (464)
T KOG1886|consen 239 LTGRSDRDKVLGKLLEVVWQNSCSTSEAKPAGDQGSLWPNPSVSPCGALEQPSHA 293 (464)
T ss_pred CCCcccccccccccchhhccccccccccCCCcccccCCCCcccchhhhhhhhhhh
Confidence 222223333444555555334476666655544 5443 356778877666543
No 116
>KOG4218|consensus
Probab=22.35 E-value=38 Score=35.88 Aligned_cols=49 Identities=24% Similarity=0.723 Sum_probs=28.2
Q ss_pred eeccccCCCCCCC-CCeeecCCCCCcc--------cccccccCCC--CCCCceecCCCCC
Q psy5823 291 WICPACGVQDDGS-LPMIGCDGCDAWY--------HWVCVGLVAE--PETSDWFCPKCSK 339 (444)
Q Consensus 291 ~~C~VC~~~ddg~-~~mI~CD~C~~Wf--------H~~CvG~~~~--~~~~~w~Cp~C~~ 339 (444)
-.|+|||.--.|- ..++-|++|...| |..|..-..- .....-.||.|+.
T Consensus 16 ElCPVCGDkVSGYHYGLLTCESCKGFFKRTVQNnK~YtC~e~qnC~iDkTqRKRCP~CRF 75 (475)
T KOG4218|consen 16 ELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNNKQYTCSEEQNCHIDKTQRKRCPSCRF 75 (475)
T ss_pred cccccccCccccceeeeeehhhhhhHHHHHhhcCcceecccccccccchHhhccCCchhH
Confidence 3799999532221 1378899999877 4555432211 1122356887754
No 117
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=21.88 E-value=6.5 Score=30.65 Aligned_cols=42 Identities=21% Similarity=0.518 Sum_probs=31.4
Q ss_pred ceeccccCCCCCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCC
Q psy5823 290 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 338 (444)
Q Consensus 290 ~~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~ 338 (444)
...|..|+....-. .+-||-.|++|--.+|..- .-|.|..|.
T Consensus 7 ry~CDLCn~~~p~~-~LRQCvlCGRWaC~sCW~d------eYY~CksC~ 48 (57)
T PF14445_consen 7 RYSCDLCNSSHPIS-ELRQCVLCGRWACNSCWQD------EYYTCKSCN 48 (57)
T ss_pred hHhHHhhcccCcHH-HHHHHhhhchhhhhhhhhh------hHhHHHhhh
Confidence 35688898866433 4789999999999999854 346777775
No 118
>PF06098 Radial_spoke_3: Radial spoke protein 3; InterPro: IPR009290 This family consists of several radial spoke protein 3 (RSP3) sequences. Eukaryotic cilia and flagella present in diverse types of cells perform motile, sensory, and developmental functions in organisms from protists to humans. They are centred by precisely organised, microtubule-based structures, the axonemes. The axoneme consists of two central singlet microtubules, called the central pair, and nine outer doublet microtubules. These structures are well conserved during evolution. The outer doublet microtubules, each composed of A and B sub-fibres, are connected to each other by nexin links, while the central pair is held at the centre of the axoneme by radial spokes. The radial spokes are T-shaped structures extending from the A-tubule of each outer doublet microtubule to the centre of the axoneme. Radial spoke protein 3 (RSP3), is present at the proximal end of the spoke stalk and helps in anchoring the radial spoke to the outer doublet. It is thought that radial spokes regulate the activity of inner arm dynein through protein phosphorylation and dephosphorylation [].
Probab=21.82 E-value=2.7e+02 Score=28.79 Aligned_cols=42 Identities=17% Similarity=0.307 Sum_probs=33.3
Q ss_pred hhceeccccCcccccccccchhhhhhhhhhhhhHHhhhhhHH
Q psy5823 95 VKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKK 136 (444)
Q Consensus 95 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ke~~~~~~~~~~ 136 (444)
+-|..+-|.|+|-+||.-+-.|-+-|.-.+-||.++..-..+
T Consensus 123 LFDFd~EV~PiLeVLVgKtlEQAl~EV~EEeEL~~lr~~q~~ 164 (291)
T PF06098_consen 123 LFDFDEEVKPILEVLVGKTLEQALMEVMEEEELAALRRQQRA 164 (291)
T ss_pred ccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556778899999999988888888888888888877644433
No 119
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=21.75 E-value=50 Score=21.32 Aligned_cols=21 Identities=29% Similarity=0.839 Sum_probs=12.8
Q ss_pred eccccCCCCCCCCCeeecCCCCC
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDA 314 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~ 314 (444)
+|+.|+....++ ...|..|+.
T Consensus 1 ~Cp~CG~~~~~~--~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDD--AKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCc--CcchhhhCC
Confidence 467777665544 556666653
No 120
>KOG1080|consensus
Probab=21.62 E-value=74 Score=38.03 Aligned_cols=50 Identities=26% Similarity=0.596 Sum_probs=40.7
Q ss_pred ceeccccCCCCC-CCCCeeecCCCCCcccccccccCCCCCCCceecCCCCC
Q psy5823 290 VWICPACGVQDD-GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 339 (444)
Q Consensus 290 ~~~C~VC~~~dd-g~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~ 339 (444)
...|.+|+...+ ....++.||.|...-|..|.|......+..|.|..|..
T Consensus 573 t~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 623 (1005)
T KOG1080|consen 573 TERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGTSWVCDSCET 623 (1005)
T ss_pred cccccccccccccccceeeeeccccccCCCcccccCCCCCCCcchhhcccc
Confidence 356989986543 22378999999999999999998886667899999985
No 121
>KOG2846|consensus
Probab=21.61 E-value=49 Score=34.62 Aligned_cols=38 Identities=21% Similarity=0.401 Sum_probs=27.9
Q ss_pred CCeeecCCCCCcccccccccCCCCCCCceecCCCCCccccc
Q psy5823 304 LPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDEGS 344 (444)
Q Consensus 304 ~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~~~~ 344 (444)
..-+.|..|.. |..|+.. ....+-.|+|++|...+...
T Consensus 218 ryALIC~~C~~--HNGla~~-ee~~yi~F~C~~Cn~LN~~~ 255 (328)
T KOG2846|consen 218 RYALICSQCHH--HNGLARK-EEYEYITFRCPHCNALNPAK 255 (328)
T ss_pred hhhhcchhhcc--ccCcCCh-hhcCceEEECccccccCCCc
Confidence 35677888875 8888877 33455689999998766543
No 122
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=21.54 E-value=71 Score=31.95 Aligned_cols=25 Identities=28% Similarity=0.772 Sum_probs=16.9
Q ss_pred ceeccccCCCCCCCCCeeecCCCCCcc
Q psy5823 290 VWICPACGVQDDGSLPMIGCDGCDAWY 316 (444)
Q Consensus 290 ~~~C~VC~~~ddg~~~mI~CD~C~~Wf 316 (444)
...|..||..... .+-.|.+|..|-
T Consensus 354 ~~~c~~cg~~~~~--~~~~c~~c~~~~ 378 (389)
T PRK11788 354 RYRCRNCGFTART--LYWHCPSCKAWE 378 (389)
T ss_pred CEECCCCCCCCcc--ceeECcCCCCcc
Confidence 3568778875443 366788888874
No 123
>KOG0112|consensus
Probab=21.00 E-value=85 Score=36.97 Aligned_cols=16 Identities=56% Similarity=0.638 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhhhcC
Q psy5823 219 KKEKLKKKKKEKERSS 234 (444)
Q Consensus 219 kkek~k~kKKEKeRss 234 (444)
+++..+++...++..+
T Consensus 775 ~~e~~~k~p~~k~da~ 790 (975)
T KOG0112|consen 775 EKEKLKKKPHRKGDAS 790 (975)
T ss_pred hhhhhhcCCCCcCcCc
Confidence 3333444444444444
No 124
>KOG2879|consensus
Probab=20.82 E-value=57 Score=33.55 Aligned_cols=48 Identities=27% Similarity=0.610 Sum_probs=28.6
Q ss_pred eeccccCCCCCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCccc
Q psy5823 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 342 (444)
Q Consensus 291 ~~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~~ 342 (444)
..|.+|+.+..-- +.|+| |+.-|..+|+.-... -+..|.|+.|.....
T Consensus 240 ~~C~~Cg~~PtiP-~~~~~--C~HiyCY~Ci~ts~~-~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 240 TECPVCGEPPTIP-HVIGK--CGHIYCYYCIATSRL-WDASFTCPLCGENVE 287 (298)
T ss_pred ceeeccCCCCCCC-eeecc--ccceeehhhhhhhhc-chhhcccCccCCCCc
Confidence 4699999855433 34442 444566667654322 223489999985443
No 125
>PHA00626 hypothetical protein
Probab=20.82 E-value=83 Score=25.14 Aligned_cols=32 Identities=28% Similarity=0.707 Sum_probs=20.9
Q ss_pred eccccCCCCCCCCCeeecCCCCCcccccccccCCCCCCCceecCCCCCcc
Q psy5823 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 341 (444)
Q Consensus 292 ~C~VC~~~ddg~~~mI~CD~C~~WfH~~CvG~~~~~~~~~w~Cp~C~~~~ 341 (444)
.|+.|+. ...|.|..|..|- ..|.|+.|-...
T Consensus 2 ~CP~CGS-----~~Ivrcg~cr~~s-------------nrYkCkdCGY~f 33 (59)
T PHA00626 2 SCPKCGS-----GNIAKEKTMRGWS-------------DDYVCCDCGYND 33 (59)
T ss_pred CCCCCCC-----ceeeeeceecccC-------------cceEcCCCCCee
Confidence 3666766 2466677766652 469999997543
No 126
>KOG3248|consensus
Probab=20.71 E-value=1.1e+02 Score=32.53 Aligned_cols=7 Identities=43% Similarity=0.757 Sum_probs=3.6
Q ss_pred CCCCCCC
Q psy5823 31 GPGLIPR 37 (444)
Q Consensus 31 ~~~~~~~ 37 (444)
+-|-|||
T Consensus 102 avgqip~ 108 (421)
T KOG3248|consen 102 AVGQIPH 108 (421)
T ss_pred ccccCCC
Confidence 4455554
No 127
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=20.43 E-value=78 Score=34.39 Aligned_cols=13 Identities=31% Similarity=0.971 Sum_probs=10.2
Q ss_pred CCCCceecCCCCC
Q psy5823 327 PETSDWFCPKCSK 339 (444)
Q Consensus 327 ~~~~~w~Cp~C~~ 339 (444)
..+++|.||.|..
T Consensus 454 ~lp~~~~cp~c~~ 466 (479)
T PRK05452 454 EVPDNFLCPECSL 466 (479)
T ss_pred hCCCCCcCcCCCC
Confidence 3456899999984
No 128
>PF11671 Apis_Csd: Complementary sex determiner protein; InterPro: IPR021007 Sex determination proteins are found in eukaryotes. Proteins in this family are typically between 168 and 410 amino acids in length. It plays a role in the gender determination of around 20% of all animals. In the honeybee, the mechanism of sex determination depends on the complementary sex determiner (csd) gene which produces an SR-type protein. Males are homozygous while females are homozygous for the csd gene. Heterozygosity generates an active protein which initiates female development []. This entry represents the C-terminal end of the sex determination protein.
Probab=20.02 E-value=1.2e+02 Score=28.10 Aligned_cols=8 Identities=25% Similarity=0.571 Sum_probs=4.9
Q ss_pred CCCCCCCC
Q psy5823 59 PPSKMKDK 66 (444)
Q Consensus 59 ~~~~~~~~ 66 (444)
||+|+-+.
T Consensus 123 PPrFippn 130 (146)
T PF11671_consen 123 PPRFIPPN 130 (146)
T ss_pred CCccCCcc
Confidence 67776543
Done!