RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5823
(444 letters)
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 78.0 bits (192), Expect = 3e-18
Identities = 35/62 (56%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 286 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL-VAEPETSDWFCPKCSKVDEGS 344
Q+WICP C DDGS PMIGCD CD WYHW CVG+ A PE WFCPKC+ +
Sbjct: 14 WGNQIWICPGCNKPDDGS-PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72
Query: 345 RK 346
+K
Sbjct: 73 KK 74
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 73.7 bits (181), Expect = 7e-17
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 285 GDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDE 342
G S C ACG I CD C+ W+H CV + + CP CS
Sbjct: 1 GSSGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60
Query: 343 GS 344
S
Sbjct: 61 PS 62
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 65.3 bits (159), Expect = 4e-14
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 292 ICPA--CGVQDDGSLPMIGCDG-CDAWYHWVCVGLVAEP-ETSDWFCPKCS 338
+C A C + + CDG CD W+H VCVG+ E E D+ C C+
Sbjct: 2 VCAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 64.1 bits (156), Expect = 2e-13
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 278 AADEYDTGDSKQVWI--CPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV-AEPETSDWFC 334
++ W C CG +DD M+ CDGC W+H C+G+ A+ S + C
Sbjct: 2 SSGSSGMERGVDNWKVDCK-CGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLC 60
Query: 335 PKCSK 339
+C +
Sbjct: 61 FRCIE 65
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC,
structural genom type zinc finger, protein binding, zinc
ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 63.7 bits (155), Expect = 3e-13
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 278 AADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 337
+ + + + C C G PMI C+ C W H C + + C KC
Sbjct: 7 HSSGRENLYFQGLVTCF-CMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKC 64
Query: 338 SK 339
Sbjct: 65 RD 66
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 63.0 bits (153), Expect = 5e-13
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 296 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGSRKEKKKRGR 353
C + D + MI CD C W+H CVG+ E P+ + CP C K G KKKR
Sbjct: 15 CRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK-THGKSTLKKKRTW 73
Query: 354 KK 355
K
Sbjct: 74 HK 75
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 61.6 bits (150), Expect = 9e-13
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 296 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 337
C G PMI C+ C W H C + + C KC
Sbjct: 9 CMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKC 49
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 61.5 bits (148), Expect = 5e-12
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 290 VWICPACGVQDDGSLPMIGCDG-CDAWYHWVCVGL-------VAEPETSDWFCPKCSKVD 341
V+ C AC + + I C+ C W+H C G+ + ++ W C C K
Sbjct: 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62
Query: 342 EGSRKEKKKR 351
EGS +
Sbjct: 63 EGSGSGSGSQ 72
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 58.4 bits (141), Expect = 2e-11
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 296 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGSRKEKKKRGR 353
C + + MI C C W+H CVG+ E + + CP C V G K
Sbjct: 17 CRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV-FGPSIMKNWHSG 75
Query: 354 KKK 356
Sbjct: 76 PSS 78
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 58.0 bits (140), Expect = 3e-11
Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 285 GDSKQVWICPACGVQDDGSLPMIGCDGCD---AWYHWVCVGLVAEPETSDWFCPKCSKVD 341
G S C C G M+GCD D W+H+ CVGL P+ W+CP+C+
Sbjct: 1 GSSGSSGYCI-CNQVSYG--EMVGCDNQDCPIEWFHYGCVGLTEAPK-GKWYCPQCTA-A 55
Query: 342 EGSRKEKKKRGRKK 355
R + K G
Sbjct: 56 MKRRGSRHKSGPSS 69
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 57.6 bits (139), Expect = 4e-11
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 277 AAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL------VAEPETS 330
++ + + C + MI CD C+ W+H CVG+ + E
Sbjct: 2 SSGSSGECEVYDPNALYCICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGE 60
Query: 331 DWFCPKCSK 339
D+ CP C+
Sbjct: 61 DYICPNCTI 69
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 63.9 bits (156), Expect = 5e-11
Identities = 11/120 (9%), Positives = 37/120 (30%), Gaps = 3/120 (2%)
Query: 116 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKE 175
L +++ + K + + K+ + + + E + + + +
Sbjct: 893 RILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ 952
Query: 176 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 235
E ++ E K+ ++ + ++ + E+L+K + H
Sbjct: 953 LTELNYNGVPELTERKD---TFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
Score = 52.0 bits (125), Expect = 3e-07
Identities = 16/155 (10%), Positives = 46/155 (29%), Gaps = 1/155 (0%)
Query: 84 KTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIK 143
+ PK +E S+++ + + + I + G + ++E +
Sbjct: 815 EKPPKGQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEAL 874
Query: 144 KKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEK 203
+ + K+ K +K E K E + ++ + +
Sbjct: 875 RIELKRQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETG-DSITAVQAKLKNLEAFDG 933
Query: 204 DSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 238
+ + + + D +L + E++
Sbjct: 934 ECQSLEGQSNSDLLSILAQLTELNYNGVPELTERK 968
Score = 42.7 bits (101), Expect = 2e-04
Identities = 11/120 (9%), Positives = 35/120 (29%), Gaps = 21/120 (17%)
Query: 76 KEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHK 135
+ S E +K+K++E + +S++ +
Sbjct: 906 SVYLGSNETGDSITAVQAKLKNLEA-------------------FDGECQSLEGQSNSDL 946
Query: 136 KKEKEKIKKKKDKKDKDKIKNKE--KDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEK 193
++ + + + K+ ++ K + K + E+ K+++
Sbjct: 947 LSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHH 1006
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway,
WNT signaling complex, chromosomal rearrangement,
signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A
2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 56.6 bits (136), Expect = 8e-11
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 286 DSKQVWICPACGVQDDGSLPMIGCDG-CDAWYHWVCVGL-------VAEPETSDWFCPKC 337
S V+ C C + + I C+ C W+H +C G+ + ++ W C C
Sbjct: 4 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTC 63
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 62.0 bits (149), Expect = 1e-10
Identities = 27/121 (22%), Positives = 38/121 (31%), Gaps = 3/121 (2%)
Query: 250 DMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGC 309
ME+KT +ES A +E K + IGC
Sbjct: 3 HMEQKTPKESDRCGGCGKFTHEDDLI-ALEEEKKKEKEKPLMSKKKSHHHKKNDFQWIGC 61
Query: 310 DGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGSRKEKKKRGRKKKTHQDIIMSTYR 367
D C WYH++C GL +FCPKC S + K + + +
Sbjct: 62 DSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSIRYKVVAPHRYRWYSPNEKHLGI 121
Query: 368 F 368
Sbjct: 122 E 122
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 59.0 bits (143), Expect = 2e-09
Identities = 27/131 (20%), Positives = 56/131 (42%), Gaps = 5/131 (3%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEF--KMKEDKE 192
++E K K + + ++ K E K+ + + K ++ KE K E ++
Sbjct: 900 MMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYS 959
Query: 193 KPVEKIRKEEKD---SEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGT 249
EK+R + + SE+E K+ +E++ K +KE ++ EK+ I + K+
Sbjct: 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH 1019
Query: 250 DMEEKTKRESS 260
+ E+
Sbjct: 1020 ETEQLVSELKE 1030
Score = 58.2 bits (141), Expect = 4e-09
Identities = 23/136 (16%), Positives = 61/136 (44%), Gaps = 13/136 (9%)
Query: 116 EDLGEIKKDKSIKKDK-KTHKKKEKEKIKKKKDK-----KDKDKIKNKEKDKEKKVDKEK 169
++ + K K + + E EK++ ++ ++ N+ ++++ K +
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997
Query: 170 EKGKKEEKEKK--EEKEFKMKEDKEKPVEKIRKEEKDSEKEK-----KSKDKDKKLKKEK 222
++ + + EKK EE K K + E+ V +++++ + EK + D+ K++ +
Sbjct: 998 KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057
Query: 223 LKKKKKEKERSSHEKE 238
KK +E ++ +
Sbjct: 1058 EKKLVEETKQLELDLN 1073
Score = 52.0 bits (125), Expect = 3e-07
Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 4/129 (3%)
Query: 114 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGK 173
L K D++ + K + + + + D E+ E+E
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981
Query: 174 KEEKEKKEEKEFKM--KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE--KLKKKKKE 229
+ ++E KE + EK EE + + +++ +LK++ LK +K+E
Sbjct: 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041
Query: 230 KERSSHEKE 238
R H++
Sbjct: 1042 LNRRIHDQA 1050
Score = 50.9 bits (122), Expect = 7e-07
Identities = 20/121 (16%), Positives = 45/121 (37%), Gaps = 3/121 (2%)
Query: 121 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKK 180
I + K + + +K D + + ++E K + +EE K
Sbjct: 937 IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996
Query: 181 E---EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 237
+ K+ E+ +K + E + E K ++ K +KE+L ++ ++ + E
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056
Query: 238 E 238
Sbjct: 1057 M 1057
Score = 49.7 bits (119), Expect = 2e-06
Identities = 18/123 (14%), Positives = 55/123 (44%), Gaps = 5/123 (4%)
Query: 125 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKE 184
+S+++ KK H E + ++ ++ +++K +K ++ + E+ E+
Sbjct: 914 RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST-ETEKLRSDVERL 972
Query: 185 FKMKEDKEKPVEKIRKEEKDSEKEK----KSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 240
+E+ + ++ +++ K + +++ + K +++ K K + ++ S KE
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032
Query: 241 PKL 243
L
Sbjct: 1033 TLL 1035
Score = 48.2 bits (115), Expect = 4e-06
Identities = 16/137 (11%), Positives = 43/137 (31%), Gaps = 17/137 (12%)
Query: 120 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEK 179
+ + K K + + K + + + +E +K K E +
Sbjct: 857 KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916
Query: 180 KEEKEFK----------------MKEDKEKPVEKIRKEEKDSEKEKKS-KDKDKKLKKEK 222
+ K+ ++ + +EK+ E E + + ++L+ +
Sbjct: 917 ERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSE 976
Query: 223 LKKKKKEKERSSHEKEV 239
+ K S ++E+
Sbjct: 977 EEAKNATNRVLSLQEEI 993
Score = 43.9 bits (104), Expect = 8e-05
Identities = 17/125 (13%), Positives = 45/125 (36%), Gaps = 5/125 (4%)
Query: 120 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEK 179
+++ + K + + K K + + K + +
Sbjct: 841 ATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRM 900
Query: 180 KEEKEFKMKEDKEKPVEKIRK-----EEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 234
++E K + + + VE+ +K E K + ++K +++K+ K K E S+
Sbjct: 901 MAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST 960
Query: 235 HEKEV 239
+++
Sbjct: 961 ETEKL 965
Score = 42.0 bits (99), Expect = 4e-04
Identities = 18/111 (16%), Positives = 49/111 (44%), Gaps = 4/111 (3%)
Query: 116 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDK--KDKDKIKNKEKDKEKKVDKEKEKGK 173
E L +++ ++ ++E K++K+ + +K I+ + + ++ + K
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Query: 174 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 224
++ K EKE + ++ K E + + +++K + L E+L+
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQ--AKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 37.4 bits (87), Expect = 0.009
Identities = 15/133 (11%), Positives = 48/133 (36%), Gaps = 5/133 (3%)
Query: 127 IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFK 186
I+K ++ + +++ + + + ++ + ++ + K +K +
Sbjct: 822 IQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARV 881
Query: 187 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFK 246
K + ++ + +++ K KLK E ++ +K E +++ +L K
Sbjct: 882 HYHRTLKAIVYLQCCYRRMMAKRELK----KLKIEARSVERYKKLHIGLENKIM-QLQRK 936
Query: 247 FGTDMEEKTKRES 259
+E
Sbjct: 937 IDEQNKEYKSLLE 949
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 52.5 bits (126), Expect = 2e-09
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 291 WICPACGVQDDGSLPMIGCDG---CDAWYHWVCVGLVAEPETSDWFCPKCSK 339
C C G MIGCD W+H+ CV L +P+ WFCP+C +
Sbjct: 10 TYCL-CHQVSYGE--MIGCDNPDCPIEWFHFACVDLTTKPK-GKWFCPRCVQ 57
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 51.8 bits (124), Expect = 4e-09
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 292 ICPACG-VQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 337
+C C + S ++ CD C+ H C G+ PE W C C
Sbjct: 18 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEG-QWLCRHC 63
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 57.3 bits (137), Expect = 4e-09
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 4/166 (2%)
Query: 255 TKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDA 314
+ + + A V+ C C D + MI CD C
Sbjct: 3 GAAAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPPVY-C-VCRQPYDVNRFMIECDICKD 60
Query: 315 WYHWVCVGL--VAEPETSDWFCPKCSKVDEGSRKEKKKRGRKKKTHQDIIMSTYRFERDP 372
W+H CVG+ + + CP C+ + S +K++ + + S
Sbjct: 61 WFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAGTR 120
Query: 373 SELVDKSACAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAPQCE 418
+ + + + AD + + + + P+ +
Sbjct: 121 TFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLD 166
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 51.3 bits (122), Expect = 1e-08
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 255 TKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDG--- 311
+ SP+ + V S P D D + C C G MIGCD
Sbjct: 3 SGSSGSPEYGMPSVTFGSVHPSDVLDM--PVDPNEPTYCL-CHQVSYGE--MIGCDNPDC 57
Query: 312 CDAWYHWVCVGLVAEPETSDWFCPKCSK 339
W+H+ CVGL +P WFCP+CS+
Sbjct: 58 SIEWFHFACVGLTTKPR-GKWFCPRCSQ 84
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Length = 60
Score = 50.2 bits (120), Expect = 1e-08
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 286 DSKQVWICPACGVQDDGSLPMIGCDG---CDAWYHWVCVGLVAEPETSDWFCPKCSK 339
+ +C + MIGCD W+H+ CVGL +P WFCP+CS+
Sbjct: 8 NEPTYCLCHQVSYGE-----MIGCDNPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQ 58
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural
genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 50.3 bits (120), Expect = 2e-08
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 277 AAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDG---CDAWYHWVCVGLVAEPETSDWF 333
+ + D + C C G MIGCD W+H+ CVGL +P WF
Sbjct: 3 SGSSGDMPVDPNEPTYCL-CHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPR-GKWF 58
Query: 334 CPKCSK 339
CP+CS+
Sbjct: 59 CPRCSQ 64
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 49.3 bits (117), Expect = 5e-08
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 266 KPVKSPSPPPVAAADEYDTGDSKQVWICPACG-VQDDGSLPMIGCDGCDAWYHWVCVGLV 324
+ ++ D V C C + S ++ CD C+ H C G+
Sbjct: 3 TKQTARKSTGGSSGSSQSLIDEDAV--CSICMDGESQNSNVILFCDMCNLAVHQECYGVP 60
Query: 325 AEPETSDWFCPKC 337
PE W C C
Sbjct: 61 YIPEG-QWLCRHC 72
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 54.1 bits (130), Expect = 6e-08
Identities = 29/141 (20%), Positives = 67/141 (47%)
Query: 120 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEK 179
+++++++ ++ + K KIKK +D + +N + KE+K+ +E+ +
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 180 KEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 239
+EEK + + K K I + E +KE+KS+ + +K+K++ + E+ + +
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
Query: 240 IPKLTFKFGTDMEEKTKRESS 260
I +L + EE +
Sbjct: 1083 IAELKAQLAKKEEELQAALAR 1103
Score = 53.3 bits (128), Expect = 1e-07
Identities = 29/128 (22%), Positives = 59/128 (46%)
Query: 111 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKE 170
KVT+ + +++ D I +D+ KE++ ++++ + + +EK K K K
Sbjct: 978 KVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Query: 171 KGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 230
+ E E + +KE K +++ EK K+ E D ++ K +L KK++E
Sbjct: 1038 ESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097
Query: 231 ERSSHEKE 238
+ + E
Sbjct: 1098 QAALARLE 1105
Score = 50.6 bits (121), Expect = 8e-07
Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 3/126 (2%)
Query: 113 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKG 172
++L EI + + +++ + ++ + KKK ++ D + E+++ + + EK
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 173 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 232
+ K KK E + + ED+ K+ KE K E+ + ++EK K K K +
Sbjct: 980 TADGKIKKMEDDILIMEDQ---NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK 1036
Query: 233 SSHEKE 238
Sbjct: 1037 HESMIS 1042
Score = 49.4 bits (118), Expect = 2e-06
Identities = 20/146 (13%), Positives = 69/146 (47%), Gaps = 5/146 (3%)
Query: 120 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEK 179
E K + ++ +K + E + ++ + ++ K+++ E+ + + + + ++EE+
Sbjct: 884 EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943
Query: 180 KEEKEFKMK-----EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 234
++ + K K D E+ +E+ + + EK + D K ++ + + + + +
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLT 1003
Query: 235 HEKEVIPKLTFKFGTDMEEKTKRESS 260
E++++ + T++ E+ ++ +
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKN 1029
Score = 49.1 bits (117), Expect = 2e-06
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE 181
K + + ++ +++E + K + +K D K +D ++ + K KE K +E
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011
Query: 182 EKEFKMKEDKEKPVEKIRKEEKDSEK-EKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 238
+ + + EK + K K E + + +LKKE+ +++ EK + E E
Sbjct: 1012 RVS-DLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Score = 46.0 bits (109), Expect = 2e-05
Identities = 21/119 (17%), Positives = 61/119 (51%), Gaps = 3/119 (2%)
Query: 121 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKK 180
I++++ + + KKK ++++ +++ ++++ ++ EK K K +++
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 181 EEKEFKMKEDKEKPVEKIRKEEKD-SEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 238
E++ K+ ++++ E++ + +E+E+K+K+ K K K + E E ++E
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK--LKNKHESMISELEVRLKKEE 1052
Score = 45.6 bits (108), Expect = 3e-05
Identities = 25/133 (18%), Positives = 62/133 (46%), Gaps = 4/133 (3%)
Query: 116 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKK-KDKKDKDKIKNKEKDKEKKVDKEKEKGKK 174
E + + + + K T +EK +++K + + + + + + +E E+
Sbjct: 871 ERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILH 930
Query: 175 EEKEKKEEKE---FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 231
E + + EE+E +++ +K+K +++ E+ E+E+ ++ K + K K KK ++
Sbjct: 931 EMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMED 990
Query: 232 RSSHEKEVIPKLT 244
++ KLT
Sbjct: 991 DILIMEDQNNKLT 1003
Score = 43.7 bits (103), Expect = 1e-04
Identities = 24/138 (17%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Query: 107 PNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVD 166
P + L ++ + + + K ++ KE+ +K + + + + K+ + +EK +
Sbjct: 838 PWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897
Query: 167 KEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK------ 220
+EK + + E + EE ++ K++ E + + E E+E++ + + KK
Sbjct: 898 QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957
Query: 221 EKLKKKKKEKERSSHEKE 238
L+++ +E+E + + +
Sbjct: 958 LDLEEQLEEEEAARQKLQ 975
Score = 42.5 bits (100), Expect = 3e-04
Identities = 17/123 (13%), Positives = 58/123 (47%)
Query: 116 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKE 175
E+L K+ + + + +++ ++ ++K+ + E E + + + KK+
Sbjct: 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQ 923
Query: 176 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 235
E E+ + E++E+ ++++ E+K +++ ++ + ++ +K + EK +
Sbjct: 924 ELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983
Query: 236 EKE 238
+ +
Sbjct: 984 KIK 986
Score = 42.1 bits (99), Expect = 3e-04
Identities = 21/128 (16%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 120 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKD---KDKIKNKEKDKEKKVDKEKEKGKKEE 176
+ K +K + + ++++K K K K++ E +V +KE+ ++E
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057
Query: 177 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD-----KKLKKEKLKKKKKEKE 231
EK + K D + + +++ + + + + K+++ +L+ E +K K+
Sbjct: 1058 LEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKK 1117
Query: 232 RSSHEKEV 239
E +
Sbjct: 1118 IRELESHI 1125
Score = 41.4 bits (97), Expect = 7e-04
Identities = 34/218 (15%), Positives = 90/218 (41%), Gaps = 19/218 (8%)
Query: 62 KMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTS-SEDLGE 120
KM+ ++ ++ +E+ + ++ K K+K +E + M K+T + L E
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011
Query: 121 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGK------- 173
D + ++ K K K+K K + + +K+++ + + EK K K
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSD 1071
Query: 174 --------KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK-EKKSKDKDKKLK--KEK 222
+ + + + + K +E+ + + ++ E KK ++ + + +E
Sbjct: 1072 LHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQED 1131
Query: 223 LKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESS 260
L+ +K + ++ +K + + T++E+ ++
Sbjct: 1132 LESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTAT 1169
Score = 39.0 bits (91), Expect = 0.003
Identities = 18/104 (17%), Positives = 56/104 (53%), Gaps = 6/104 (5%)
Query: 136 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPV 195
+ + E++++ K+++ K + + KE ++K +EK +EK + E + + E+
Sbjct: 860 QAKDEELQRTKERQQKAEAELKEL-EQKHTQLCEEKNLLQEKLQAETELYAEAEEM---- 914
Query: 196 EKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 239
++R K E E+ + + ++++E+ + ++ + E+ ++++
Sbjct: 915 -RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957
Score = 37.1 bits (86), Expect = 0.012
Identities = 15/119 (12%), Positives = 46/119 (38%), Gaps = 1/119 (0%)
Query: 119 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKE 178
GE + + + K ++ KK+++ + +++ +K +K + +
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHIS 1126
Query: 179 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 237
+E K + K EK +++ + + K++ +D ++ + + +K
Sbjct: 1127 DLQEDLESEKAARNK-AEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 32.5 bits (74), Expect = 0.35
Identities = 18/115 (15%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 115 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKK--KDKKDKDKIKNKEKDKEKKVDK----- 167
E + E++ + K + K++E + + + K+ K ++ E +
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Query: 168 EKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 222
E EK + + EK++ + E+ E ++ + +++ + D K +K
Sbjct: 1133 ESEKAARNKAEKQKR---DLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 49.0 bits (116), Expect = 8e-08
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 267 PVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDG---CDAWYHWVCVGL 323
P+ S + G++ Q + C G M+ CD W+H+ CVGL
Sbjct: 2 PLGSHMASEFINQGDVTEGNNNQEEVYCFCRNVSYGP--MVACDNPACPFEWFHYGCVGL 59
Query: 324 VAEPETSDWFCPKCSKVDEGSRKEKKKRGRKK 355
P+ W+C K K R + K++ R+K
Sbjct: 60 KQAPK-GKWYCSKDCKEIANQRSKSKRQKRRK 90
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 48.0 bits (114), Expect = 9e-08
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 279 ADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCD---AWYHWVCVGLVAEPETSDWFCP 335
E+ ++ + C C G MIGCD W+H+ CV L +P+ W+CP
Sbjct: 1 GSEFAIDPNEPTY-CL-CNQVSYGE--MIGCDNEQCPIEWFHFSCVSLTYKPK-GKWYCP 55
Query: 336 KCSKVDE 342
KC +E
Sbjct: 56 KCRGDNE 62
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 51.3 bits (122), Expect = 1e-07
Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 5/129 (3%)
Query: 213 DKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPS 272
D + K+E ++ + + + + E SP + +
Sbjct: 99 DAEISRKRETRTARELYANVVLGDDSLNDCRIIFVDEVFKIERPGEGSPMVDNPMRRKSG 158
Query: 273 PPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETS 330
P D+ + +V C CG + D + CD CD +H C+ L + P
Sbjct: 159 PSCKHCKDDVN--RLCRVCACHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSED 215
Query: 331 DWFCPKCSK 339
+W+CP+C
Sbjct: 216 EWYCPECRN 224
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 47.5 bits (113), Expect = 2e-07
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 293 CPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSK 339
C CG + D + CD CD +H C+ L + P +W+CP+C
Sbjct: 21 CHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 50.2 bits (119), Expect = 2e-07
Identities = 19/82 (23%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKP 194
+E E I+K ++++ K + +E D KV +++ + EK KK+ +E+ ++ ++
Sbjct: 80 LTQEPESIRKWREEQRK---RLQELDAASKVMEQEWR----EKAKKDLEEWNQRQSEQV- 131
Query: 195 VEKIRKEEKDSEKE-KKSKDKD 215
EK + + ++K + D D
Sbjct: 132 -EKNKINNRIADKAFYQQPDAD 152
Score = 44.4 bits (104), Expect = 2e-05
Identities = 15/84 (17%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 161 KEKKVDKEKEKGKK--EEKEKK-EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 217
+ ++ +E E +K EE+ K+ +E + K +++ EK +K+ ++ + + ++
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR-----QSEQ 130
Query: 218 LKKEKLKKKKKEKE-RSSHEKEVI 240
++K K+ + +K + ++I
Sbjct: 131 VEKNKINNRIADKAFYQQPDADII 154
Score = 43.2 bits (101), Expect = 4e-05
Identities = 9/58 (15%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 122 KKDKSI-KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKE 178
++ K + + D + +++ + K KKD ++ ++ ++++ +K K ++ +K ++ +
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 46.8 bits (111), Expect = 3e-07
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 293 CPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSK 339
C CG + D + CD CD +H C+ L + P +W+CP+C
Sbjct: 29 CHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 46.5 bits (110), Expect = 3e-07
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 283 DTGDSKQVWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGLVAEPETSD-----WFCP 335
D+ + C C MI C+ C W H CV + +P S ++C
Sbjct: 3 DSFQPEAKVRCI-CSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60
Query: 336 KC--SKVD 341
C S+ D
Sbjct: 61 LCRLSRAD 68
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 45.8 bits (109), Expect = 3e-07
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 283 DTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSK 339
+G S C C ++ CD C YH C+ L P+ W CP+C
Sbjct: 2 SSGSSGHEDFCSVCRKSGQ----LLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQD 55
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 46.7 bits (111), Expect = 4e-07
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 293 CPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSK 339
C CG + + ++ + CD C+ YH C+ L PE W+CP C
Sbjct: 29 CRVCGGKHEPNM-QLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 49.2 bits (116), Expect = 4e-07
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--------PETSDWFCPKCS 338
+C C DD M+ C CD W H C L E PE+ + C C+
Sbjct: 6 PLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT 61
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 45.9 bits (108), Expect = 6e-07
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 277 AAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGLVAEPETSD--- 331
++ E +V C CG + MI C+ C W H CV L +P +
Sbjct: 4 GSSGEDPFQPEIKVR-CV-CGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPL 60
Query: 332 ---WFCPKC 337
++C C
Sbjct: 61 PESFYCEIC 69
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein;
NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Length = 61
Score = 45.1 bits (107), Expect = 7e-07
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 291 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCS 338
C C D G L + CD C + YH C+ L P +W CP+C+
Sbjct: 10 EFCRVCK--DGGEL--LCCDTCPSSYHIHCLNPPLPEIPN-GEWLCPRCT 54
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 44.6 bits (106), Expect = 9e-07
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 293 CPACGVQDDGSLPMIGCDGCDAWYHWVCV--GLVAEPETSDWFCPKCS 338
C C + + +I CD C+ +H C+ L P+ +W CP C
Sbjct: 3 CKVCRKKGEDDK-LILCDECNKAFHLFCLRPALYEVPD-GEWQCPACQ 48
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 50.0 bits (118), Expect = 9e-07
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGSRKEKK 349
+ C + D + MI CD C W+H CVG+ E + + CP C + S +K+
Sbjct: 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKR 65
Query: 350 KRGRKKKTHQDIIMS 364
+ K
Sbjct: 66 RGSSKGHDTHKGKPV 80
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 44.3 bits (105), Expect = 1e-06
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 293 CPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSK 339
C C G + I CD C YH VC+ + PE W CP C K
Sbjct: 14 CEVCQ--QGGEI--ILCDTCPRAYHMVCLDPDMEKAPE-GKWSCPHCEK 57
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 49.0 bits (116), Expect = 2e-06
Identities = 39/210 (18%), Positives = 75/210 (35%), Gaps = 37/210 (17%)
Query: 67 VSPKDKTSPKEKMSSKEKTS----PKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIK 122
+ D+ PK +M+ K P+ E + K+VE V V T+
Sbjct: 772 IRGSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVE-----KVATAVLSTT-------- 818
Query: 123 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEE 182
+ K KK +KEK +++KK + + K KE++ KK KE ++ +E + K
Sbjct: 819 -----ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYS 873
Query: 183 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSK----DKDKKL--------KKEKLKKKKKEK 230
+ + + ++ + K + K K ++ K E
Sbjct: 874 SKP---YKVDNMTRILPQQSRYISFIKDDRFVPVRKFKGNNGVVVLRDREPKEPVALIET 930
Query: 231 ERSSHEKEVIPKLTFKFGTDMEEKTKRESS 260
R + FK +++ + + S
Sbjct: 931 VRQMKDVNAPLPTPFKVDDNVDFPSALQPS 960
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo sapiens}
PDB: 2ke1_A 2kft_A
Length = 66
Score = 43.6 bits (103), Expect = 3e-06
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV-AEPETSDWFCPKCSKVDEGSRKEKKK 350
C C D G L I CDGC +H C+ E + W C C + + +E +
Sbjct: 10 ECAVCR--DGGEL--ICCDGCPRAFHLACLSPPLREIPSGTWRCSSCL---QATVQEVQP 62
Query: 351 RGRK 354
R +
Sbjct: 63 RAEE 66
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 44.5 bits (105), Expect = 3e-06
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSKVDEGSRKEK 348
IC C D+ ++ CDGCD YH C+ L P W CPKC + E
Sbjct: 18 ICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRG-IWRCPKCILAECKQPPEA 74
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 43.6 bits (103), Expect = 3e-06
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSKVDEGSRKEK 348
C C ++ CD C YH C+ L P+ W CP+C D+ +KE+
Sbjct: 7 FCSVCRKSGQ----LLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRC--QDQMLKKEE 58
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 43.7 bits (103), Expect = 3e-06
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 285 GDSKQVWICPACGVQDDGSL-PMIGCDGCDAWYHWVC----VGLVAEPETSDWFCPKCSK 339
G S +C C + + M+ CD C YH +C + W C +C
Sbjct: 1 GSSGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60
Query: 340 VDEGSR 345
R
Sbjct: 61 ATTTKR 66
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 44.3 bits (104), Expect = 6e-06
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCS 338
C +C Q + M+ CD CD +H C L P+ W C C
Sbjct: 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPK-GMWICQICR 110
Score = 33.9 bits (77), Expect = 0.022
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 292 ICPACGVQDDGSLP--MIGCDGCDAWYHWVCVG----LVAEPETSDWFCPKC 337
C Q+ P +I C C H C+ L + W C +C
Sbjct: 10 FCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC 61
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 44.3 bits (104), Expect = 6e-06
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 286 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG-LVAEPETSDWFCPKCSKVDEG 343
+ C CG ++ ++ CD CD YH C+ VAEP W C C ++ +
Sbjct: 54 QCIECKSCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111
Score = 26.9 bits (59), Expect = 6.7
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 7/53 (13%)
Query: 292 ICPACGVQDDGSLP---MIGCDGCDAWYHWVCVG----LVAEPETSDWFCPKC 337
C + S ++ C C H C+ + +T W C +C
Sbjct: 6 FCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 45.3 bits (107), Expect = 8e-06
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL--VAEPETSDWFCPKCSKVDEGSRKEKK 349
+ C +D S IGCD C WYH CVG+ ++ CP+C ++
Sbjct: 9 LYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTP 68
Query: 350 KRGRKKKTHQDIIMS 364
+ + + ++ S
Sbjct: 69 LTEKDYEGLKRVLRS 83
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 45.0 bits (106), Expect = 1e-05
Identities = 12/79 (15%), Positives = 16/79 (20%), Gaps = 26/79 (32%)
Query: 272 SPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSD 331
+ + + V CP C V +V D
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPP--------------------KIVERFSEGD 42
Query: 332 WFCPKCSKV------DEGS 344
C C V D S
Sbjct: 43 VVCALCGLVLSDKLVDTRS 61
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 42.7 bits (100), Expect = 2e-05
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG-LVAEPETSDWFCPKCSK 339
+C C + S M+ CD CD YH C+ ++ T+ W C C
Sbjct: 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103
Score = 42.7 bits (100), Expect = 2e-05
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP-ETSDWFCP---KCSKVDEGSRKE 347
C C D C C YH +C+ + P + + W CP C +
Sbjct: 9 NCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDS 67
Query: 348 K 348
K
Sbjct: 68 K 68
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 45.7 bits (108), Expect = 2e-05
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 6/102 (5%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKK------EEKEKKEEKEFKMK 188
+ D D+++ ++ K + K+K K E++ KE +
Sbjct: 7 VAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDE 66
Query: 189 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 230
++ + +E+D + E D D K+K KKKKK
Sbjct: 67 VARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 45.3 bits (107), Expect = 3e-05
Identities = 17/109 (15%), Positives = 42/109 (38%), Gaps = 1/109 (0%)
Query: 126 SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEF 185
+ +++ ++ K++ K+KK G++E ++
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVD 65
Query: 186 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 234
++ E+ + ++ ++D E D KK+K KKKK+ + +
Sbjct: 66 EVARQLERSALEDKERDEDDEDGDGDGDGATG-KKKKKKKKKRGPKVQT 113
Score = 37.6 bits (87), Expect = 0.008
Identities = 16/153 (10%), Positives = 50/153 (32%)
Query: 79 MSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKE 138
+ + D E G K + + +++
Sbjct: 4 VEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGAS 63
Query: 139 KEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKI 198
+++ ++ ++ + + E D++ D + GKK++K+KK+ + P+ +
Sbjct: 64 VDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPICDL 123
Query: 199 RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 231
+ ++ + + + +EK+
Sbjct: 124 YPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKK 156
Score = 28.0 bits (62), Expect = 7.7
Identities = 17/93 (18%), Positives = 35/93 (37%)
Query: 57 TPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSE 116
P + + S ++ + K++ K+ P + V ++ ++ E
Sbjct: 18 LDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALE 77
Query: 117 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKK 149
D + D+ D K+K+K KKK+ K
Sbjct: 78 DKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 40.8 bits (95), Expect = 5e-05
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 293 CPACGVQDDGSL-PMIGCDGCDAWYHWVC------VGLVAEPETSDWFCPKCSKVDEGSR 345
C C S ++ C C YH C V +P W+C +C++ +
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRL-VWYCARCTRQMKRMA 77
Query: 346 KEKKKRGRK 354
++ +K G
Sbjct: 78 QKNQKSGPS 86
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 43.9 bits (104), Expect = 8e-05
Identities = 38/169 (22%), Positives = 75/169 (44%), Gaps = 28/169 (16%)
Query: 66 KVSPKDKT--SPKEKMSSK---EKTSPKEKEYSKVKDVELGVTPMVPNIV---KVTSSED 117
KV+PK +T +P+EK+ EK S VKD L V V V +V + +
Sbjct: 886 KVTPKGETQLTPEEKLLRAIFGEKAS-------DVKDSSLRVPNGVSGTVIDVQVFTRDG 938
Query: 118 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKI---KNKEKDKEKKVDKEKEKGKK 174
++KDK+ + +E + + KKD ++ +I + + V E K
Sbjct: 939 ---------VEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKL 989
Query: 175 EEKEKKEEKEFKMK-EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 222
++ + E + E+K+ +E++ ++ + + E + K + K+ K +
Sbjct: 990 DKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038
Score = 31.6 bits (72), Expect = 0.67
Identities = 20/129 (15%), Positives = 48/129 (37%), Gaps = 9/129 (6%)
Query: 141 KIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRK 200
++ + + + E+ + K+ K+ + + + + + EK+ K
Sbjct: 932 QVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGGVEAEKLDK 991
Query: 201 EEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESS 260
+D E D++K+ + E+L ++ E + +K + G D+
Sbjct: 992 LPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDL--------- 1042
Query: 261 PKIVIKPVK 269
V+K VK
Sbjct: 1043 APGVLKIVK 1051
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 43.3 bits (102), Expect = 1e-04
Identities = 16/128 (12%), Positives = 42/128 (32%), Gaps = 9/128 (7%)
Query: 116 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKD---------KKDKDKIKNKEKDKEKKVD 166
L I + + + K+ ++++++ + K ++ N EK+KEK
Sbjct: 153 AKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTK 212
Query: 167 KEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 226
+ K + + ++E ++K E S + K + ++
Sbjct: 213 FVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAP 272
Query: 227 KKEKERSS 234
+
Sbjct: 273 NGVLTIDN 280
Score = 40.2 bits (94), Expect = 0.001
Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 1/116 (0%)
Query: 125 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKE 184
K + K + K+ D+ +K K E KE + E+ +G+ KE+ +
Sbjct: 138 AKFLSLKPSEKLETVAKLLGI-DEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKAR 196
Query: 185 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 240
K + EK EK+ K + +K ++ ++ + K ++ +
Sbjct: 197 LKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEF 252
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 39.9 bits (93), Expect = 1e-04
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 7/48 (14%)
Query: 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCV--GLVAEPETSDWFCPKC 337
IC C D ++ C+ C+ +H C L P +W C C
Sbjct: 27 ICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPG-EEWSCSLC 69
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 43.0 bits (100), Expect = 2e-04
Identities = 15/118 (12%), Positives = 51/118 (43%), Gaps = 4/118 (3%)
Query: 121 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKK 180
I+ ++ ++ K+ + ++ + +K+K E+ K + + K E +
Sbjct: 455 IQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAE----SAQASAKMLHEMQ 510
Query: 181 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 238
+ E M++ + E +++ + E ++ K+++ +++++ + +KE
Sbjct: 511 RKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE 568
Score = 41.1 bits (95), Expect = 6e-04
Identities = 14/112 (12%), Positives = 56/112 (50%), Gaps = 5/112 (4%)
Query: 128 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKE-----EKEKKEE 182
+ +K+ + + K + + K+ ++ + K +++ ++KE+ +E ++ + +
Sbjct: 479 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMEND 538
Query: 183 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 234
+ +KE + K++++E+ ++ + + + K + + L+ K + ++ +
Sbjct: 539 RVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKACT 590
Score = 33.8 bits (76), Expect = 0.12
Identities = 12/92 (13%), Positives = 38/92 (41%)
Query: 116 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKE 175
E K + K ++KE+ ++ K+ +K++N K+ ++ +E
Sbjct: 497 ESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 556
Query: 176 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK 207
+++ +E K + ++ ++ + + +
Sbjct: 557 QEQLLKEGFQKESRIMKNEIQDLQTKMRRRKA 588
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 41.0 bits (95), Expect = 2e-04
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 292 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL-VAEPETSDWFCPKC 337
IC C Q G L + C+ C+ +H C + + +W C C
Sbjct: 4 ICRVC--QKPGDL--VMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 40.1 bits (93), Expect = 0.001
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 1/110 (0%)
Query: 124 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEK-KVDKEKEKGKKEEKEKKEE 182
++ K + + KI KK++ + K + + K K E K+K +
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 518
Query: 183 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 232
+ + E + ++ + K D ++ KK E+
Sbjct: 519 RLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEK 568
Score = 34.0 bits (77), Expect = 0.095
Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
Query: 155 KNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 214
+ K EK + + K ++++ + + + V K K +K E +KK+ +
Sbjct: 460 RAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQR 519
Query: 215 -DKKLKKEKLKKKKKEKERSSHEKE 238
+++L K +++ +E+ +
Sbjct: 520 LEEQLMKLEVQATDREENKQIALGT 544
Score = 32.0 bits (72), Expect = 0.40
Identities = 19/119 (15%), Positives = 38/119 (31%), Gaps = 3/119 (2%)
Query: 108 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDK 167
N + + ++ KK + +K K K K+ K
Sbjct: 457 NHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKV---MKDAKTKKVVESK 513
Query: 168 EKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 226
+K + EE+ K E + +E+ ++ K + + K + EK+ K
Sbjct: 514 KKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYNK 572
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 38.6 bits (89), Expect = 0.002
Identities = 19/118 (16%), Positives = 58/118 (49%), Gaps = 2/118 (1%)
Query: 120 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEK 179
++ K++ +D ++K+ + K +++ + N E+D K+ + + + + +
Sbjct: 61 QVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSL-NIEEDIAKERSNQANREIENLQNE 119
Query: 180 KEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 237
+ K K ++ K++ + ++ K + E +++ K+ K ++ + KKK++ + K
Sbjct: 120 IKRKSEKQEDLKKE-MLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPK 176
Score = 32.0 bits (72), Expect = 0.34
Identities = 19/122 (15%), Positives = 48/122 (39%), Gaps = 5/122 (4%)
Query: 117 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEE 176
++ + K+ + K+K+ +K K+ K+K + +E+ K+ K + ++
Sbjct: 12 EISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQD 71
Query: 177 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 236
K K+ K +E + E+ + +++ + E +R S +
Sbjct: 72 TNAKIASI-----QKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEK 126
Query: 237 KE 238
+E
Sbjct: 127 QE 128
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Length = 511
Score = 38.9 bits (89), Expect = 0.003
Identities = 35/245 (14%), Positives = 66/245 (26%), Gaps = 35/245 (14%)
Query: 4 TEEDDQAVVRQSAPMFPFQFSPFPSV-AGPGLIPRLPPMLQHPLIPQPLVHPPGTPPPSK 62
+ PM P V A P P + P+ P P
Sbjct: 176 QNGTQYMAIIGGIPM------TVPVVDAVPVPDRSRPGTNIKDVYSAPV--SPNLPDLVL 227
Query: 63 MKDKVSPKDKTSPKEKMSSKEKTSPKEKE---------------YSKVKDVELGVTPMVP 107
+++ +++P+ + + E + + V V
Sbjct: 228 SVGQMNTPVRSNPEIQEDGVISETGNYVEAGYTMSSNNHDVIVRFPEGSGVSPLYISAVE 287
Query: 108 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKD--KKDKDKIKNKEKDKEKKV 165
+ + S+ K + KK + EK + K + DK+ DK K +
Sbjct: 288 ILDSNSLSQRQEAENNAKDDFRVKKEQENDEKTVLTKTSEVIISVGDKVGEYLGDKYKAL 347
Query: 166 DKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 225
+E + + K + +D + K+ K DK+ K
Sbjct: 348 SREIAENINNFQGKT----IRSYDDAMSSINKLMA-----NPSLKINATDKEAIVNAWKA 398
Query: 226 KKKEK 230
E
Sbjct: 399 FNAED 403
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 38.6 bits (89), Expect = 0.003
Identities = 22/124 (17%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Query: 115 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVD---KEKEK 171
S L + + K K +++ ++ K+K E + E+ + KEK +
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQ 351
Query: 172 GKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL-----KKEKLKKK 226
K+ + + + + +MK++ E +++ ++ + E EK + + +++ L+K
Sbjct: 352 KLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKN 411
Query: 227 KKEK 230
KK+
Sbjct: 412 KKKG 415
Score = 37.5 bits (86), Expect = 0.008
Identities = 20/90 (22%), Positives = 40/90 (44%)
Query: 143 KKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 202
K + + K + E+ ++E K ++ E +M++ E V++ ++
Sbjct: 294 KLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKL 353
Query: 203 KDSEKEKKSKDKDKKLKKEKLKKKKKEKER 232
KDSE E + + + K E K+ +EK R
Sbjct: 354 KDSEAELQRRHEQMKKNLEAQHKELEEKRR 383
Score = 32.5 bits (73), Expect = 0.31
Identities = 18/105 (17%), Positives = 45/105 (42%)
Query: 134 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEK 193
+K D K + + ++ + K ++ E + E+ F+MK ++
Sbjct: 291 RSRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKV 350
Query: 194 PVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 238
K + E E+ K+ + + K+ + K+++ E E+++ E +
Sbjct: 351 QKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQ 395
Score = 30.6 bits (68), Expect = 1.3
Identities = 25/105 (23%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 113 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE-KDKEKKVDKEKEK 171
S E ++ + + K KK + E+ K K+K K K E + + +++ K E
Sbjct: 314 KSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEA 373
Query: 172 GKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 216
KE +EK+ ++F+ ++ + ++I +++ S +K+K K K
Sbjct: 374 QHKELEEKR--RQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 38.3 bits (88), Expect = 0.003
Identities = 15/158 (9%), Positives = 67/158 (42%), Gaps = 4/158 (2%)
Query: 78 KMSSKEKTSPKEKEYSKVKDV---ELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTH 134
K++ K S +++ + ++ + L + + T ++ + + + K+ +
Sbjct: 53 KIAEAGKVSIQQQSHMPLQYIYTLFLEHDLSLGTLAMETVAQQKRDYYQPLAAKRTEIEK 112
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKP 194
+KE ++ K+ K+ + ++ + + + V + ++ + + ++ + K
Sbjct: 113 WRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAP-QASPGPSKQ 171
Query: 195 VEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 232
E+ R+ ++++ + + + + + ++++ E
Sbjct: 172 QERRRRSREEAQAKAQEAEALYQACVREANARQQDLEI 209
Score = 32.5 bits (73), Expect = 0.21
Identities = 15/101 (14%), Positives = 38/101 (37%), Gaps = 9/101 (8%)
Query: 148 KKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE---------EKEFKMKEDKEKPVEKI 198
+ + K + EK + KE+ KE+K E + + ED +
Sbjct: 97 RDYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGS 156
Query: 199 RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 239
++ SK ++++ + + + K ++ + ++ V
Sbjct: 157 PEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACV 197
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 38.5 bits (90), Expect = 0.004
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 9/108 (8%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEE-KEKKEEKE-------FK 186
+ K +E+ +K K++ E+ + E K + K EE +
Sbjct: 564 RGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGR 623
Query: 187 MKEDKEKPVEKIR-KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 233
+E+ + IR K+E K ++ + + K++KK+ E
Sbjct: 624 YLAKEEEKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKDTEGD 671
Score = 35.4 bits (82), Expect = 0.037
Identities = 26/148 (17%), Positives = 52/148 (35%), Gaps = 18/148 (12%)
Query: 108 NIVKVTSSEDLGEIKKDKSIKKDKKTHK--KKEKEKI-------------KKKKDKKDKD 152
++ V + L K ++ I+K+ + K E + K +++
Sbjct: 514 DLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAP 573
Query: 153 KIKNKEKDK-EKKVDKEKEK-GKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 210
+ EK K + ++K +E + K + K +E IR E+EKK
Sbjct: 574 FASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEE-LASLGNIIRGRYLAKEEEKK 632
Query: 211 SKDKDKKLKKEKLKKKKKEKERSSHEKE 238
+ K+ + +K + E E
Sbjct: 633 QAIRSKQEASQMAAMAEKLAAQRKAEAE 660
Score = 33.8 bits (78), Expect = 0.12
Identities = 19/140 (13%), Positives = 44/140 (31%), Gaps = 17/140 (12%)
Query: 109 IVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKE 168
VK+ D + + + + + +KK K + ++KE
Sbjct: 477 PVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKE 536
Query: 169 KEKGKKEEKEKKEEKE---------FKMKED-KEKPVEKIRKEEKD------SEKEKKSK 212
+ ++K E ++ + ++ +E+ EK ++ E+
Sbjct: 537 -NEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLY 595
Query: 213 DKDKKLKKEKLKKKKKEKER 232
D+ K K K +E
Sbjct: 596 DEGFDSIKAKYIAKYEELAS 615
Score = 30.4 bits (69), Expect = 1.5
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
Query: 62 KMKDKVSPKDKTSPKEKMSSKEK-------TSPKEKEYSKVKDVELGVTPMVPNIVKVTS 114
+ S +KT + ++ E+ S K K +K +++ + +
Sbjct: 570 EYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEE 629
Query: 115 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD 160
+ K ++ + K + K + +K ++ KD + + D
Sbjct: 630 EKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKDTEGDVDMD 675
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 38.7 bits (90), Expect = 0.004
Identities = 17/123 (13%), Positives = 41/123 (33%), Gaps = 1/123 (0%)
Query: 108 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDK 167
N K E++ + + + K+ ++ I +++ +
Sbjct: 904 NKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQR 963
Query: 168 EKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK-DKDKKLKKEKLKKK 226
E E KEE ++ + ++ ++ E + K S + K KK+ + +K
Sbjct: 964 EAEALIKEENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQK 1023
Query: 227 KKE 229
Sbjct: 1024 IVS 1026
Score = 36.1 bits (83), Expect = 0.029
Identities = 26/215 (12%), Positives = 72/215 (33%), Gaps = 27/215 (12%)
Query: 61 SKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGE 120
+ ++ + D+ + + + + + P E K + +++ +
Sbjct: 786 LRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRK--- 842
Query: 121 IKKDKSIKKDKKTHKKKEKEKIKK-----------------KKDKKDKDKIKNKEKDKEK 163
I+ +S D + +++EKE KK K + + D I + +
Sbjct: 843 IQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNR 902
Query: 164 KVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 223
+ + E EE ++ + + V+ I ++ + +
Sbjct: 903 QNKGKGE--MIEEVKRLIRSSLGNRAKEGLVVDFI--QQTNLDDLPDKASIIDAFFTFAQ 958
Query: 224 KKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRE 258
+++++E E E+ + ++ + KRE
Sbjct: 959 REQQREAEALIKEENLNEDAAKRY---IRTSLKRE 990
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex,
exonuclease, hydrolase, mRNA proces nuclease, nucleus,
rRNA processing, transcription; 2.20A
{Schizosaccharomyces pombe}
Length = 899
Score = 37.4 bits (85), Expect = 0.009
Identities = 20/181 (11%), Positives = 55/181 (30%), Gaps = 1/181 (0%)
Query: 57 TPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSE 116
+ +T E ++S + TS K K + ++ + N+ + TS+
Sbjct: 423 ESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDLVNLSEKTSNR 482
Query: 117 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEE 176
LG ++ + + +K +K + E + E
Sbjct: 483 SLGATNRELINNRAANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVPLEDSIASS 542
Query: 177 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 236
++ + P++ + +++ ++ + + +ER +
Sbjct: 543 SAYEDTDSIESSTPVVHPIDT-KVSNVGQKRKAPDSTEENENTDTVRLYEPGYRERYYEQ 601
Query: 237 K 237
K
Sbjct: 602 K 602
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 35.7 bits (81), Expect = 0.015
Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Query: 136 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPV 195
+E E I+K ++++ K +++ + + + +EK KK+ +E + + E EK
Sbjct: 96 TQEPESIRKWREEQRK-RLQELDAASKVMEQEWREKAKKDLEEWNQ----RQSEQVEKNK 150
Query: 196 EKIRKEEKDSEKEKKS 211
R +K ++ +
Sbjct: 151 INNRIADKAFYQQPDA 166
Score = 33.0 bits (74), Expect = 0.14
Identities = 9/59 (15%), Positives = 33/59 (55%)
Query: 120 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKE 178
E ++ + + D + +++ + K KKD ++ ++ ++++ +K K ++ +K ++ +
Sbjct: 107 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 165
Score = 32.2 bits (72), Expect = 0.22
Identities = 13/67 (19%), Positives = 32/67 (47%)
Query: 126 SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEF 185
SI+K ++ +K+ +E K + + + K K+ +E + ++ K + + +K F
Sbjct: 101 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 160
Query: 186 KMKEDKE 192
+ D +
Sbjct: 161 YQQPDAD 167
Score = 31.8 bits (71), Expect = 0.30
Identities = 11/65 (16%), Positives = 30/65 (46%)
Query: 158 EKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 217
E ++ + ++ K + + K E+E++ K K+ R+ E+ + + ++ DK
Sbjct: 100 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKA 159
Query: 218 LKKEK 222
++
Sbjct: 160 FYQQP 164
Score = 28.3 bits (62), Expect = 3.5
Identities = 11/74 (14%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 167 KEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 226
+ ++ +E + ++ +E + K +E + K + +EK KD ++ +++ + +
Sbjct: 90 AQADRLTQEPESIRKWREEQRKRLQEL--DAASKVMEQEWREKAKKDLEEWNQRQSEQVE 147
Query: 227 KKEKERSSHEKEVI 240
K + +K
Sbjct: 148 KNKINNRIADKAFY 161
Score = 27.6 bits (60), Expect = 8.2
Identities = 10/76 (13%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 156 NKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 215
++ + + + K +E+ +K ++ + M+++ + +K +E + E+ K+K
Sbjct: 93 DRLTQEPESIRKWREEQRK-RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 151
Query: 216 KKLKKEKLKKKKKEKE 231
+K ++ + +
Sbjct: 152 NNRIADKAFYQQPDAD 167
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.015
Identities = 51/387 (13%), Positives = 98/387 (25%), Gaps = 124/387 (32%)
Query: 140 EKIKKKKDKKD-----KDKIKNKEKDKEKKVDKEKEKGKK-----EEKEKKEEKEF---K 186
+ D KD K + +E D + K+++ ++F
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV 86
Query: 187 MKEDKEKPVEKIRKEEKD-SEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTF 245
++ + + + I+ E++ S + ++ +L + K R ++ L
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL- 145
Query: 246 KFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGSLP 305
+ + ++I V G K C
Sbjct: 146 ----------ELRPAKNVLIDGVL---------------GSGKTWVALDVC--LSYKVQC 178
Query: 306 MIGCDGCDAWYHWVCVGLVAEPET---------SDWFCPKCSKVDEGSR--------KEK 348
+ W+ + PET S+ D S + +
Sbjct: 179 KMDFKI-----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE 233
Query: 349 KKRGRKKKTHQD----------------------IIMSTYRFERDPS------------- 373
+R K K +++ I+++T R
Sbjct: 234 LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT----RFKQVTDFLSAATTTHI 289
Query: 374 ELVDKSACAGSRADLKLCLLETDC------VQVDRKTPRQC------LREGLA------- 414
L S L L DC +V PR+ +R+GLA
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 415 PQCEALKNTFFECKRSL--LDNRTRFR 439
C+ L L + R F
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFD 376
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 36.0 bits (84), Expect = 0.016
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 186 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL--KKEKLKKKKKEKERSSHEKEVI 240
+ K + VE+ +EE+ +++EK+ D + + ++E+ K K K+ E++ + E++
Sbjct: 212 YVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELM 268
Score = 35.3 bits (82), Expect = 0.032
Identities = 8/45 (17%), Positives = 24/45 (53%)
Query: 142 IKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFK 186
K + ++ + + K++++ D E ++EE++K + K+ +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVE 259
Score = 34.9 bits (81), Expect = 0.040
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 173 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 217
K E E+ E+E KE+KE ++ EE++ EK+ K+K +K
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 33.7 bits (78), Expect = 0.081
Identities = 9/46 (19%), Positives = 23/46 (50%)
Query: 169 KEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 214
K + E+ +EE+ K +++ + +EE++ + + K +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 33.3 bits (77), Expect = 0.11
Identities = 5/46 (10%), Positives = 24/46 (52%)
Query: 139 KEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKE 184
K + ++ ++++ +EK+ +E+ ++++ + K+ ++
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 33.3 bits (77), Expect = 0.13
Identities = 9/47 (19%), Positives = 25/47 (53%)
Query: 137 KEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEK 183
K + ++ ++++ + KE ++ +E+E+ KK + +K E+
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 33.0 bits (76), Expect = 0.16
Identities = 11/50 (22%), Positives = 26/50 (52%)
Query: 157 KEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 206
K + E+ +++E+ +++E E + +E+K+ +K+ K D E
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWE 266
Score = 33.0 bits (76), Expect = 0.17
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 167 KEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 209
+ E+ +EE+ KEEKE E + E+ +K + ++
Sbjct: 219 ETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 32.6 bits (75), Expect = 0.19
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 176 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 221
K + E+ + +E ++ E E E+E++ K K KK++K
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 31.4 bits (72), Expect = 0.47
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 177 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 222
K E E M+E++ EK +++ + +E++ + K K K EK
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 31.4 bits (72), Expect = 0.47
Identities = 11/46 (23%), Positives = 25/46 (54%)
Query: 148 KKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEK 193
K + + E+++ K +KE + +E++EEK+ K K+ ++
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 30.3 bits (69), Expect = 1.1
Identities = 6/48 (12%), Positives = 26/48 (54%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEE 182
K + E+ ++++ ++K + ++ ++ ++EK+ K+ ++ +
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 36.3 bits (83), Expect = 0.017
Identities = 18/119 (15%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 112 VTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEK 171
+++ K+++ + ++KE+ ++ + + + + K+ EK++ ++ ++
Sbjct: 311 TDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDR 370
Query: 172 GKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 230
KK +++K++ E K K + E +++ + E + + LK+ K++K
Sbjct: 371 LKKLHQDEKKKLEDKKKSLDD---EVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
Score = 35.9 bits (82), Expect = 0.027
Identities = 22/122 (18%), Positives = 50/122 (40%), Gaps = 4/122 (3%)
Query: 111 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKE 170
++ + + K + + + E KK+++ + + KEK+ E K +++
Sbjct: 305 EMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKEL 364
Query: 171 KGKKEEKEKKEEKEFKMKEDK----EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 226
K + +K + E K EDK + V ++ + +E + + + K K+
Sbjct: 365 HEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKE 424
Query: 227 KK 228
KK
Sbjct: 425 KK 426
Score = 34.7 bits (79), Expect = 0.059
Identities = 21/99 (21%), Positives = 46/99 (46%)
Query: 115 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKK 174
+E LGE++K + + + KEKE K+ +K+ +K +K + + K ++K K
Sbjct: 329 NEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKS 388
Query: 175 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD 213
+ E K+ K + + + +++K+ K+
Sbjct: 389 LDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKKN 427
Score = 34.3 bits (78), Expect = 0.075
Identities = 22/96 (22%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Query: 144 KKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEK 203
++ KD D +E K E + +K+++E ++ ++ KEK E E++
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363
Query: 204 DSEKEKKSKDKDKKLKKE-KLKKKKKEKERSSHEKE 238
EK + K + KK+ + KKK + E ++ ++
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQR 399
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 34.8 bits (79), Expect = 0.018
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 280 DEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV--------AEPETSD 331
D+ C C + G+L I CD C + C+ E +
Sbjct: 47 DDISRDSDGMDEQCRWCA--EGGNL--ICCDFCHNAFCKKCILRNLGRRELSTIMDENNQ 102
Query: 332 WFCPKCSK 339
W+C C
Sbjct: 103 WYCYICHP 110
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 35.3 bits (81), Expect = 0.018
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 296 CGV-QDDGSLPMIGCDGCDAWYHWVCVG-LVAEPETSDWFCPKCSKVDEGSRKEKKKRGR 353
C V Q+ G L + C+ C +H C + + +W C C + + +
Sbjct: 7 CAVCQNGGEL--LCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPS 64
Query: 354 KKKTHQDIIMSTYRFERDP 372
+ D
Sbjct: 65 HNSEKKKTEGLVKLTPIDK 83
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 36.4 bits (83), Expect = 0.018
Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 3/132 (2%)
Query: 111 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKE 170
+ DL I K + + +KK ++ KK K+ + +
Sbjct: 282 HKMLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTIL 341
Query: 171 KGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 230
+ K K + ++ ++ K EK +K K+ K KK KK + KK
Sbjct: 342 RQAKNHKLRMDKAAAALEA---KSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAAT 398
Query: 231 ERSSHEKEVIPK 242
++ + +K+ K
Sbjct: 399 KKPAADKKPAEK 410
Score = 33.3 bits (75), Expect = 0.16
Identities = 15/76 (19%), Positives = 30/76 (39%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKP 194
++ + K++ K + ++ KK ++K K K+ K+ K +KP
Sbjct: 342 RQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Query: 195 VEKIRKEEKDSEKEKK 210
+ EK E+K
Sbjct: 402 AADKKPAEKKPTTEEK 417
Score = 32.5 bits (73), Expect = 0.24
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 1/87 (1%)
Query: 131 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKED 190
K + + K K + DK + K +EK V +K + KK +K +K K
Sbjct: 333 KTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Query: 191 KEKPVEKIRKEEKDSEKEKKSKDKDKK 217
K+ K +K EKK ++KK
Sbjct: 393 KKAAATKKPAADK-KPAEKKPTTEEKK 418
Score = 32.5 bits (73), Expect = 0.30
Identities = 24/113 (21%), Positives = 39/113 (34%)
Query: 82 KEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEK 141
K +K K + L + P + + T K K +EK
Sbjct: 308 KIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGV 367
Query: 142 IKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKP 194
KK +K K +K K+ V K+ KK +KK ++ E+K+
Sbjct: 368 PGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKKPA 420
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 36.3 bits (83), Expect = 0.019
Identities = 18/167 (10%), Positives = 42/167 (25%), Gaps = 3/167 (1%)
Query: 56 GTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYS---KVKDVELGVTPMVPNIVKV 112
+ D+ D K +S++ + K E ++ M P
Sbjct: 484 HIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFPFNPAK 543
Query: 113 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKG 172
+D G + D + + K K K + ++ E++
Sbjct: 544 IKKDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDP 603
Query: 173 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 219
+ + + + E K + K ++
Sbjct: 604 ISKRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVNVQ 650
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 36.4 bits (84), Expect = 0.019
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 8/152 (5%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKP 194
K+KE +IKK +K+ + + + + E +K F + ++KE+
Sbjct: 625 KEKEWGQIKKHFNKQFHGEGYDIAFKVKSYFEDN------EADVRKSIDNFHVLKNKEEY 678
Query: 195 VEKIRKEEKDSEKEKKSKDK-DKKLKKEKLKKKK-KEKERSSHEKEVIPKLTFKFGTDME 252
+ S+ KK KD LK+ K K K + +++ KE KL D
Sbjct: 679 EICNVDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKGKECCDKLPKIADGDTS 738
Query: 253 EKTKRESSPKIVIKPVKSPSPPPVAAADEYDT 284
+ ++E KP +P P D+ T
Sbjct: 739 DDEEQEDEAPAPPKPKPPSTPNPCVRKDQSGT 770
Score = 31.4 bits (71), Expect = 0.72
Identities = 23/165 (13%), Positives = 53/165 (32%), Gaps = 22/165 (13%)
Query: 88 KEKEYSKVKDV--------ELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEK 139
KEKE+ ++K + V + + ++ I +K ++
Sbjct: 625 KEKEWGQIKKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICNVD 684
Query: 140 EKIKKKKDKKDKDKIKN------------KEKDKEKKVDKEKEKGKKEEKEKKEEKEFKM 187
+ + + +KK KD + K + K K + +K K + E +
Sbjct: 685 DNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKGKECCDKLPKIADGDTSDDEEQE 744
Query: 188 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK--EKLKKKKKEK 230
E P K ++ +S ++ E ++ ++
Sbjct: 745 DEAPAPPKPKPPSTPNPCVRKDQSGTHIVSVEDVAEWMQGVTHDR 789
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 36.2 bits (83), Expect = 0.020
Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 5/143 (3%)
Query: 46 LIPQPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPM 105
L+P+ S SP E SK+ + +VE+
Sbjct: 14 LVPRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVT----AEVEVAPITT 69
Query: 106 VPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKV 165
VT++ + S + + K + + N +K EK++
Sbjct: 70 DATSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKK-SEKEI 128
Query: 166 DKEKEKGKKEEKEKKEEKEFKMK 188
+ + + + K
Sbjct: 129 WSDVVPFVRRTTDSDFDPSRMYK 151
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 36.2 bits (82), Expect = 0.021
Identities = 24/220 (10%), Positives = 68/220 (30%), Gaps = 2/220 (0%)
Query: 70 KDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKK 129
+ K S + + + + K + + + E++ + ++
Sbjct: 608 EMKKSSRGYILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNEDGPNTSRR 667
Query: 130 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKE 189
K+ + + + +D K+ + + E + + E +E+ + + E
Sbjct: 668 TKRPKQIRLLSIADSSDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQEQLKSMINE 727
Query: 190 DKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK-EVIPKLTFKFG 248
+ +++ D + E K K+ +EK+ + ++K S K + +
Sbjct: 728 LINSKISTFLRDQMD-QFELKINALLDKILEEKVTRIIEQKLGSHTGKFSTLKRPQLYMT 786
Query: 249 TDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSK 288
+ E K+ + + T S
Sbjct: 787 EEHNVGFDMEVPKKLRTSGKYAETVKDNDDHQAMSTTASP 826
Score = 30.8 bits (68), Expect = 1.1
Identities = 26/228 (11%), Positives = 71/228 (31%), Gaps = 7/228 (3%)
Query: 61 SKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGE 120
+ K + + K S + + + K+ + + + T K + +
Sbjct: 622 NLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNEDGPNTSRRTKRPKQIRLLSIAD 681
Query: 121 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKK 180
+ S + K E + + +D++ + +E+ K + K +++
Sbjct: 682 SSDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQEQLKSMINELINSKISTFLRDQM 741
Query: 181 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 240
++ E K+ +K +E EK + ++ K K+ + H
Sbjct: 742 DQFELKINALLDKILE-----EKVTRIIEQKLGSHT--GKFSTLKRPQLYMTEEHNVGFD 794
Query: 241 PKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSK 288
++ K T + + + + P + T + +
Sbjct: 795 MEVPKKLRTSGKYAETVKDNDDHQAMSTTASPSPEQDQEAKSYTDEQE 842
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 35.8 bits (83), Expect = 0.022
Identities = 18/137 (13%), Positives = 53/137 (38%), Gaps = 11/137 (8%)
Query: 119 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKE 178
G++++ + + + +E + K + ++ K K ++ K + + E +
Sbjct: 152 GDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELK 211
Query: 179 KKEEKEFKMK------EDKEKPVEKIRKEEKDSEKEKKSKDKDK----KLKKEKLKKKKK 228
+ ++ ++ + ++E+ K + K K+KK++ + +K
Sbjct: 212 TYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEK 271
Query: 229 EKER-SSHEKEVIPKLT 244
+ S H + +LT
Sbjct: 272 TFDYVSDHLDAIYRELT 288
Score = 28.5 bits (64), Expect = 4.6
Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 3/86 (3%)
Query: 156 NKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRK---EEKDSEKEKKSK 212
+ + K E K K E EE + K +
Sbjct: 122 DGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKE 181
Query: 213 DKDKKLKKEKLKKKKKEKERSSHEKE 238
++ K K EKL K E ++
Sbjct: 182 YEELKEKIEKLSKSATESIKNRRRIH 207
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 35.9 bits (82), Expect = 0.024
Identities = 23/138 (16%), Positives = 48/138 (34%), Gaps = 8/138 (5%)
Query: 108 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDK 167
N + V+S + D+ + + + E ++ K + + E++ ++++
Sbjct: 631 NGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLER 690
Query: 168 EK-------EKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 220
+K EK +KE E + K + R E E E K +
Sbjct: 691 QKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK-AQ 749
Query: 221 EKLKKKKKEKERSSHEKE 238
+ + E ER +E
Sbjct: 750 ALAIETEAELERVKKVRE 767
Score = 35.2 bits (80), Expect = 0.050
Identities = 18/117 (15%), Positives = 45/117 (38%), Gaps = 7/117 (5%)
Query: 131 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEK-------KEEK 183
+K + E EK +K+ + + + + K + + + + E E K +
Sbjct: 691 QKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQA 750
Query: 184 EFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 240
E + + V+K+R+ E + + + K + ++ KK ++ + I
Sbjct: 751 LAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTI 807
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 35.5 bits (82), Expect = 0.037
Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 162 EKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 221
K+V+KE ++E+K+++++ E K ED +KP + +E++ +K K K K++ + E
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEE-VDEEEEKKPKTKKVKEEVQEIE 268
Query: 222 KLKKKK 227
+L K K
Sbjct: 269 ELNKTK 274
Score = 34.0 bits (78), Expect = 0.11
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 178 EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 237
K+ EKE + E+++K EK +E+KD + +K ++ + +++K K KK ++E E+
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEE 269
Score = 32.0 bits (73), Expect = 0.46
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 138 EKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPV-- 195
E+ KK ++KKD++K +K + + E+E+ K + K+ KEE + + +K KP+
Sbjct: 219 IPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEELNKTKPLWT 278
Query: 196 ---EKIRKEEKDSEKEKKSKDKDKKL 218
I +EE ++ + S D + L
Sbjct: 279 RNPSDITQEEYNAFYKSISNDWEDPL 304
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc
metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis}
SCOP: d.92.1.14 d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A*
1pwq_A* 1pwv_A 1zxv_A* 1pwu_A* 1pww_A 3kwv_C
Length = 776
Score = 35.4 bits (80), Expect = 0.041
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 12/173 (6%)
Query: 71 DKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKD 130
++ + ++ K Y + P + EI KD
Sbjct: 202 SVEFLEQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAFNYMDKFNEQEINLSLEELKD 261
Query: 131 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKE--EKEKKEEKEF--- 185
++ + EK + K+ + D + + + KK+ E K + +EEKE
Sbjct: 262 QRMLSRYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKR 321
Query: 186 -------KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 231
+ ++++ ++K++ + +DS E++ + ++ +KEKE
Sbjct: 322 IQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKE 374
Score = 31.9 bits (71), Expect = 0.52
Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 4/121 (3%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKP 194
K+KEK K + K+ ++++K + +E KE K + K EE KKE E +++
Sbjct: 12 KEKEKNKDENKRKDEERNKTQ-EEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLEKVPSDV 70
Query: 195 VEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEK 254
+E + K L+ KKK + + K+ + + + + E
Sbjct: 71 LEMYKAIGGKIYIVDGDITKHISLEALSEDKKKIK---DIYGKDALLHEHYVYAKEGYEP 127
Query: 255 T 255
Sbjct: 128 V 128
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 35.3 bits (82), Expect = 0.042
Identities = 8/47 (17%), Positives = 27/47 (57%)
Query: 136 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEE 182
+KEK+ + ++ + +++ E+ ++V+ K+ K+++ ++ E
Sbjct: 407 RKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 31.8 bits (73), Expect = 0.43
Identities = 13/66 (19%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 175 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 234
++ E+K +++++K+ V+ ++ EK +D +++L+++ KK KE+
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQ-----SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQG 448
Query: 235 HEKEVI 240
E +
Sbjct: 449 QENSEV 454
Score = 27.6 bits (62), Expect = 9.8
Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 169 KEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 228
KE +K ++ +KE+ ++ EK +R E+ ++ + K K K+ + +
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEK-AASLRDTEQRLREQVEDTKKSWKEKQGQENSEVT 455
Query: 229 EKE 231
+
Sbjct: 456 VDD 458
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 35.6 bits (82), Expect = 0.042
Identities = 18/159 (11%), Positives = 57/159 (35%), Gaps = 6/159 (3%)
Query: 112 VTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEK 171
VT L I + + +K+ ++E+ + K + + +K +
Sbjct: 1892 VTPRHYLDFINQVVLLINEKRDQLEEEQLHLNIGLKKLRD---TEAQVKDLQVSLAQKNR 1948
Query: 172 GKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 231
+ E+ +K +M +D++ +I++++ + + + ++ EK
Sbjct: 1949 ELDVKNEQANQKLKQMVQDQQAA--EIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006
Query: 232 RSSHEK-EVIPKLTFKFGTDMEEKTKRESSPKIVIKPVK 269
+ E + +L ++ + ++ + K +
Sbjct: 2007 EPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIA 2045
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 34.9 bits (79), Expect = 0.054
Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 14/179 (7%)
Query: 77 EKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKK 136
+ +S +E + S K++ + + S+ + E+KK + K +K+ +K
Sbjct: 568 KGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQ--KDLEKSLRK 625
Query: 137 KEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPV- 195
+E + + +K + K KNK + K + ++ E KE + K +
Sbjct: 626 REHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIK 685
Query: 196 -------EKIRKEEKDSEKE----KKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 243
EKI K+ KD K K K+KD +E LK K + E I K+
Sbjct: 686 RELSDKLEKISKDLKDFSKSFDEFKNGKNKDFSKAEETLKALKGSVKDLGINPEWISKV 744
Score = 32.9 bits (74), Expect = 0.27
Identities = 37/197 (18%), Positives = 75/197 (38%), Gaps = 17/197 (8%)
Query: 81 SKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSE--DLGEIKKDKSIKKDKKT----H 134
S K + K +K GV+ + KV DL + ++++ +
Sbjct: 509 SNFKYTNASKNPNKGVGATNGVSHLEAGFNKVAVFNLPDLNNLAITSFVRRNLENKLTAK 568
Query: 135 KKKEKEKIKKKKDKKDKDK-IKNKEKDKEKKVDKEKEKGKKEE---KEKKEEKEFKMKED 190
+E K KD +K + K + K V + K G +E +K EK + +E
Sbjct: 569 GLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKSLRKREH 628
Query: 191 KEKPVEKIRKEEKDSEKEKKS-------KDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 243
EK VEK + + ++ + ++ KD+ L ++ + + + + K + +L
Sbjct: 629 LEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIKREL 688
Query: 244 TFKFGTDMEEKTKRESS 260
+ K ++ S
Sbjct: 689 SDKLEKISKDLKDFSKS 705
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 34.5 bits (79), Expect = 0.056
Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 123 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEE 182
+K+ K +++ + + ++KK + + ++E K E G + +E
Sbjct: 262 NNKAAKTQLAVCQQRIRRQ--LAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKE 319
Query: 183 KEFKMKEDKEKPVE 196
++ + VE
Sbjct: 320 EQKSNTAGSQSQVE 333
Score = 32.6 bits (74), Expect = 0.21
Identities = 6/65 (9%), Positives = 23/65 (35%)
Query: 125 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKE 184
++ + +EK+ ++ +++ K K + + E ++++ +
Sbjct: 271 AVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQS 330
Query: 185 FKMKE 189
E
Sbjct: 331 QVETE 335
Score = 29.5 bits (66), Expect = 2.0
Identities = 12/73 (16%), Positives = 30/73 (41%)
Query: 166 DKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 225
+K + +++ + + K+ E++ +EE ++ E S D + ++ +K
Sbjct: 263 NKAAKTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQK 322
Query: 226 KKKEKERSSHEKE 238
+S E E
Sbjct: 323 SNTAGSQSQVETE 335
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 33.9 bits (77), Expect = 0.080
Identities = 19/112 (16%), Positives = 45/112 (40%), Gaps = 3/112 (2%)
Query: 127 IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFK 186
IK+ +K +++ K K K++ + + + + K K + + E++ K
Sbjct: 100 IKEVQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSK---ENYNAKCVEQERLK 156
Query: 187 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 238
+ ++ +EK + K + K + L K ++K E + + E
Sbjct: 157 KEGATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIE 208
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Length = 315
Score = 34.0 bits (77), Expect = 0.081
Identities = 15/126 (11%), Positives = 42/126 (33%)
Query: 113 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKG 172
+ED K K + + + + K+K+ K++ + K
Sbjct: 135 EETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKN 194
Query: 173 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 232
+ ++ ++ + +K R ++ + + + +K+ EKL+ +
Sbjct: 195 RALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRLGLEIRKIYGEKLQFIFTNIDP 254
Query: 233 SSHEKE 238
+ E
Sbjct: 255 KNPESP 260
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 34.0 bits (77), Expect = 0.082
Identities = 17/159 (10%), Positives = 53/159 (33%), Gaps = 5/159 (3%)
Query: 125 KSIKKDKKTH----KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKE-KEKGKKEEKEK 179
+ +K D K+ +++ +++ K+ + + + KD K+ K + +
Sbjct: 129 EELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRESKDLHSKLSKNAASIEHYSKNNE 188
Query: 180 KEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 239
+ + ++ + + + + + K+ L+ + E +
Sbjct: 189 NSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETVM 248
Query: 240 IPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAA 278
L F+ ++++ K S + P A+
Sbjct: 249 TKFLAFEPQSEIDRFAKDASQYNFQLSSSSKEVVPNNAS 287
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 33.9 bits (77), Expect = 0.083
Identities = 13/50 (26%), Positives = 14/50 (28%)
Query: 14 QSAPMFPFQFSPFPSVAGPGLIPRLPPMLQHPLIPQPLVHPPGTPPPSKM 63
+ P P P PPM IP P G PPP
Sbjct: 172 RGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMR 221
Score = 28.1 bits (62), Expect = 5.2
Identities = 8/48 (16%), Positives = 12/48 (25%)
Query: 13 RQSAPMFPFQFSPFPSVAGPGLIPRLPPMLQHPLIPQPLVHPPGTPPP 60
++ P P + R P P + P G P
Sbjct: 157 ATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204
Score = 28.1 bits (62), Expect = 5.3
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 13 RQSAPMFPFQFSPFPSVAGPGLIPRLPPMLQHPLIPQPLVHPPGTPPP 60
+A +P PG PPM + P + PPG PP
Sbjct: 153 AAAAATASIAGAPTQY--PPGRGGPPPPMGRGAPPPGMMGPPPGMRPP 198
Score = 27.3 bits (60), Expect = 9.3
Identities = 9/42 (21%), Positives = 9/42 (21%)
Query: 20 PFQFSPFPSVAGPGLIPRLPPMLQHPLIPQPLVHPPGTPPPS 61
P Q P G P G PPP
Sbjct: 137 PSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPP 178
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 32.9 bits (74), Expect = 0.084
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 280 DEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL--------VAEPETSD 331
D+ C C + G+L I CD C + C+ E +
Sbjct: 53 DDISRDSDGMDEQCRWCA--EGGNL--ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQ 108
Query: 332 WFCPKCS 338
W+C C
Sbjct: 109 WYCYICH 115
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 34.4 bits (79), Expect = 0.093
Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 16/142 (11%)
Query: 113 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKG 172
S +DL E + D ++ E + +D D + N + K EK
Sbjct: 2 PSDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKT 61
Query: 173 KKEEKEKKEEKEFKMK-------------EDKEKPVEKIRKEE---KDSEKEKKSKDKDK 216
+ KE EF +K + V +++ + K E + D
Sbjct: 62 VPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDP 121
Query: 217 KLKKEKLKKKKKEKERSSHEKE 238
+ E ++ E+ER E E
Sbjct: 122 YVTAEDIEIMDMERERRLDEFE 143
Score = 31.3 bits (71), Expect = 0.68
Identities = 26/221 (11%), Positives = 75/221 (33%), Gaps = 21/221 (9%)
Query: 65 DKVSPKDKTSPKEKMSSKEKTSPKEKEYS-KVKDVELG-VTPMVPNIVKVTSSEDLGEIK 122
D ++ S + + P++ V + L + K + +
Sbjct: 12 DDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKEN 71
Query: 123 KDKSIKKDKKTHK----KKEKEKIKKKKDKKDKDKIK-NKEKDKEKKVDKEKEKGKKEEK 177
+ IK ++H + + + + K+ + K +D++ ++D E
Sbjct: 72 YEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIM 131
Query: 178 EKKEEKEFKMKEDKEKP---VEKIRKEEKDSEKEKKSKDKDKKLKKE-----------KL 223
+ + E+ E+ P ++ R +D + + K ++L + KL
Sbjct: 132 DMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIVKL 191
Query: 224 KKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIV 264
++ + ++ +++P+ + + + K P +
Sbjct: 192 APEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI 232
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 34.1 bits (78), Expect = 0.093
Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Query: 1 MKQTEEDDQAVVRQSAPMFPFQFSPFPSVAGP-GLIPRLPPMLQHPLIPQPLVHPPGTPP 59
MK+ Q + +Q A P ++P P P G P+ P +P PQ PP P
Sbjct: 371 MKEMMAMMQKMQQQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYP--PQGYPPPPQGAP 428
Query: 60 PSKMKDKVSPK 70
P P+
Sbjct: 429 PQGAPPAAPPQ 439
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 33.7 bits (77), Expect = 0.10
Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 1/94 (1%)
Query: 145 KKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 204
K+ + + + K+K EE+ +E E + E+ R+ E+
Sbjct: 100 SLAKEQRLNFGDDIPSALRIA-KKKRWNSIEERRIHQESELHSYLTRLIAAERERELEEC 158
Query: 205 SEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 238
+ +D ++ + K +K + ++
Sbjct: 159 QRNHEGHEDDGHIRAQQACIEAKHDKYMADMDEL 192
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 33.7 bits (78), Expect = 0.12
Identities = 12/65 (18%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 165 VDKEKEKGKKEEKEKKEEKEFKMKEDK---EKPVEKIRKEEKDSEKEKKSKDKDKKLK-K 220
+D E+ + ++E++ K+ + + K EK KE ++E+ + ++ ++ + +
Sbjct: 796 LDVEEWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIR 855
Query: 221 EKLKK 225
E L +
Sbjct: 856 EALSQ 860
Score = 32.5 bits (75), Expect = 0.27
Identities = 8/56 (14%), Positives = 26/56 (46%), Gaps = 11/56 (19%)
Query: 137 KEKEKIKKKKDK--KDKDKIKNK-------EKDKEKKVDKEKEKGKKEEKEKKEEK 183
+ + + +K+ + ++ + K EK ++ V+ E+ + +E ++ E+
Sbjct: 800 EWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEA--RLKENLEQAER 853
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 33.8 bits (76), Expect = 0.14
Identities = 21/185 (11%), Positives = 57/185 (30%)
Query: 48 PQPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVP 107
P T S + + + + + + + K E + +
Sbjct: 25 AVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGVATASETASPASNEAAT 84
Query: 108 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDK 167
+S E K + + + K + +K + K + ++K + K +K
Sbjct: 85 TETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKTEK 144
Query: 168 EKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 227
E + + EK + + E+ ++ +D + S + + +K
Sbjct: 145 EVQPDVPKNTEKTLKPKEIKFNSWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKA 204
Query: 228 KEKER 232
++ +
Sbjct: 205 SKEAK 209
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 33.2 bits (75), Expect = 0.15
Identities = 16/112 (14%), Positives = 46/112 (41%), Gaps = 7/112 (6%)
Query: 133 THKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKE 192
+ +E+++++K ++ + + K + ++K K + + ++ + K + K+
Sbjct: 104 SLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKD 163
Query: 193 KPVEKIRKEEKDSEKEKKSKDKDKKLKKE-KLKKKKKEKERSSHEKEVIPKL 243
K +K + +K +S K L + + H + ++P L
Sbjct: 164 KDRDKAK------DKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGL 209
>2wn4_A ADP-ribosyltransferase enzymatic component; CDTA, ACTIN-ADPRT,
binary toxin; 1.85A {Clostridium difficile} PDB: 2wn5_A
2wn7_A* 2wn8_A 2wn6_A*
Length = 463
Score = 33.4 bits (75), Expect = 0.17
Identities = 21/106 (19%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Query: 125 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKE 184
K ++ ++ ++ EKE ++ K D +I + + D + E +E++ K+
Sbjct: 72 KEAERIEQKLERSEKEALESYKK--DSVEISKYSQTRNYFYDYQIEANSREKEYKELRNA 129
Query: 185 F-KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 229
K K DK V EK + + + ++ EK + K+
Sbjct: 130 ISKNKIDKPMYVYYFESPEKFAFNKVIRTENQNEISLEKFNEFKET 175
Score = 28.4 bits (62), Expect = 5.3
Identities = 27/131 (20%), Positives = 51/131 (38%), Gaps = 8/131 (6%)
Query: 126 SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEF 185
S K T+K + KDK+ + + KE ++ ++ K E EK+ + +
Sbjct: 41 SEKVCNTTYKAPIERPEDFLKDKEKAKEWERKEAERIEQ--------KLERSEKEALESY 92
Query: 186 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTF 245
K + + R D + E S++K+ K + + K K +K + E K F
Sbjct: 93 KKDSVEISKYSQTRNYFYDYQIEANSREKEYKELRNAISKNKIDKPMYVYYFESPEKFAF 152
Query: 246 KFGTDMEEKTK 256
E + +
Sbjct: 153 NKVIRTENQNE 163
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 32.3 bits (74), Expect = 0.19
Identities = 17/116 (14%), Positives = 33/116 (28%), Gaps = 18/116 (15%)
Query: 141 KIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKE---------------- 184
+ K + +K ++ K V + K EK
Sbjct: 87 RFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAI 146
Query: 185 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK--EKLKKKKKEKERSSHEKE 238
+ E +EK V ++ +K KK + K + ++ + E H
Sbjct: 147 LESDEAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDILARTEGGHHHHH 202
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 33.1 bits (75), Expect = 0.20
Identities = 16/129 (12%), Positives = 44/129 (34%), Gaps = 14/129 (10%)
Query: 117 DLGEIKKDKSIKKDKK---THKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGK 173
++ + + +++ + K +++N + K K
Sbjct: 592 MSERLQWEVEKYSFQVKFIKMIIEKELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSP 651
Query: 174 KEE-KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK----------KLKKEK 222
+E E+ + + +++++ E + E+ + K + +K
Sbjct: 652 NDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMRIWSLTKERYQK 711
Query: 223 LKKKKKEKE 231
L K+K+EKE
Sbjct: 712 LLKQKQEKE 720
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 33.0 bits (75), Expect = 0.20
Identities = 18/102 (17%), Positives = 40/102 (39%), Gaps = 21/102 (20%)
Query: 121 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKD--------------------KIKNKEKD 160
+KK KS KK K + + KE +K+ + + + ++++
Sbjct: 1 MKKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADP 60
Query: 161 KEKKVDKEKEKGKKEEKEKKEEKEFKMKEDK-EKPVEKIRKE 201
+ + E + +E ++EE+E + + PV + E
Sbjct: 61 LDLEGPLEADLLPEEGLLEEEEEELSLPKVSTSDPVRQYLHE 102
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 32.9 bits (74), Expect = 0.22
Identities = 10/63 (15%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Query: 129 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMK 188
++ E + ++ K K + ++ KD+ +KE E + +E + + + +M+
Sbjct: 288 QEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILL-EKEAELRRMQEMIARMQAQMQMQ 346
Query: 189 EDK 191
Sbjct: 347 MQG 349
Score = 29.1 bits (64), Expect = 3.0
Identities = 10/54 (18%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 140 EKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEK 193
E + ++ K+ K++N++ +K++ + EKE + +E + +M+ +
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQIL-LEKEAELRRMQEMIARMQAQMQMQMQG 349
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 32.3 bits (73), Expect = 0.22
Identities = 18/119 (15%), Positives = 51/119 (42%), Gaps = 3/119 (2%)
Query: 125 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKE 184
+ I ++ +++ E I + ++ + + ++ E K + + K + + +K+
Sbjct: 5 ELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRII 64
Query: 185 FKMKEDKEKPVEKIRKEEKDS---EKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 240
+ + + I++E S E +++ + + E +K KE + +EK+V
Sbjct: 65 ANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSEDEYFESVKALLKEAIKELNEKKVR 123
Score = 30.3 bits (68), Expect = 1.00
Identities = 10/85 (11%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 165 VDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEK---DSEKEKKSKDKDKKLKKE 221
+ ++ KE + K E + ++ EK E+ R+ + + + + + ++
Sbjct: 4 AELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRI 63
Query: 222 KLKKKKKEKERSSHEKEVIPKLTFK 246
+ + + + +E I +
Sbjct: 64 IANARLEVRRKRLAIQEEIISSVLE 88
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 32.2 bits (73), Expect = 0.23
Identities = 9/119 (7%), Positives = 43/119 (36%)
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE 181
K + + ++ + + ++ + K + ++ + + + + + + + + +
Sbjct: 2 KLEAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAES 61
Query: 182 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 240
E + + + ++ +E + +E K E ++K E + + +
Sbjct: 62 AGELLVATARTQARGEVLEEVRRRVREALEALPQKPEWPEVVRKLALEALEALPGAKAL 120
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain,
winged helix domain, binding, transcription; 2.10A {Homo
sapiens} PDB: 3s32_A
Length = 177
Score = 31.7 bits (71), Expect = 0.26
Identities = 9/75 (12%), Positives = 17/75 (22%), Gaps = 11/75 (14%)
Query: 296 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETS-DWF----CPKCSKVDEGSRKEKKK 350
+ C C W+ G+ C C
Sbjct: 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFL---- 65
Query: 351 RGRKKKTHQDIIMST 365
RK+ +++ +S
Sbjct: 66 --RKQANLKEMCLSA 78
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 32.5 bits (75), Expect = 0.28
Identities = 17/104 (16%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Query: 138 EKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE-EKEFKMKEDKEKPVE 196
E+E +KK+KD ++++K E + K ++ + + E+E++ K + + ++
Sbjct: 416 EREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRR 475
Query: 197 KIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 240
+I E+ + + ++ + +L KL+ + + +
Sbjct: 476 EIELAERQYDLNRAAELRYGELP--KLEAEVEALSEKLRGARFV 517
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 32.2 bits (72), Expect = 0.29
Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 11/118 (9%)
Query: 116 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKD-KIKNKEKDKEKKVDKEKEKGKK 174
+ L ++ D + ++ +I K+ D D K ++ + D E+ VD+ +K K
Sbjct: 276 QHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFKCRHLQIDIERLVDQMIDKTKV 335
Query: 175 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 232
E+ E K + EK ++ + + E K + ++KL+ + EK+
Sbjct: 336 EKSEAK-------ATELEKKLDSELTARHELQVEMKKM---ENDFEQKLQDLQGEKDA 383
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 85
Score = 30.0 bits (67), Expect = 0.34
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 299 QDDGSLPMIGCDGCDA-WYHWVCVGLVAEPETSDWFCPKCSKVDEGS 344
+D+G +I C C + H C L + W C +C S
Sbjct: 39 EDEGRWRLILCATCGSHGTHRDCSSLRPNSK--KWECNECLPASGPS 83
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 32.0 bits (72), Expect = 0.39
Identities = 10/60 (16%), Positives = 20/60 (33%)
Query: 125 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKE 184
+K K H ++++ K + K + K E +K + E+E
Sbjct: 392 SMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEE 451
Score = 31.2 bits (70), Expect = 0.80
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 123 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEE 182
++K+ + +KK KE ++D++ + K +++ K + K GKK + E
Sbjct: 383 QNKAARLQISMCQKKAKEH--NERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNE 440
Query: 183 KEFKMKEDKEKPVE 196
K + +E+ E
Sbjct: 441 KGTDSQAMEEEKPE 454
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae}
SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 32.1 bits (72), Expect = 0.40
Identities = 8/54 (14%), Positives = 15/54 (27%)
Query: 16 APMFPFQFSPFPSVAGPGLIPRLPPMLQHPLIPQPLVHPPGTPPPSKMKDKVSP 69
+ + P +P P Q + P G P + ++P
Sbjct: 11 QAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTP 64
Score = 30.2 bits (67), Expect = 1.8
Identities = 8/48 (16%), Positives = 11/48 (22%)
Query: 14 QSAPMFPFQFSPFPSVAGPGLIPRLPPMLQHPLIPQPLVHPPGTPPPS 61
+ +P + M L PLV P P
Sbjct: 53 VPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100
Score = 29.8 bits (66), Expect = 2.0
Identities = 9/68 (13%), Positives = 18/68 (26%)
Query: 14 QSAPMFPFQFSPFPSVAGPGLIPRLPPMLQHPLIPQPLVHPPGTPPPSKMKDKVSPKDKT 73
A Q + + + P++ QP V P + + ++
Sbjct: 63 TPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYG 122
Query: 74 SPKEKMSS 81
P M
Sbjct: 123 QPSAAMGQ 130
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 32.2 bits (74), Expect = 0.41
Identities = 13/68 (19%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 173 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 232
++ E+K +++++K+ V+ ++ EK +D +++L+++ KK KE+
Sbjct: 392 TPPNLKELEQKLDEVRKEKDAAVQ-----SQEFEKAASLRDTEQRLREQVEDTKKSWKEK 446
Query: 233 SSHEKEVI 240
E +
Sbjct: 447 QGQENSEV 454
Score = 30.2 bits (69), Expect = 1.7
Identities = 8/47 (17%), Positives = 27/47 (57%)
Query: 136 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEE 182
+KEK+ + ++ + +++ E+ ++V+ K+ K+++ ++ E
Sbjct: 407 RKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 32.0 bits (72), Expect = 0.52
Identities = 12/121 (9%), Positives = 38/121 (31%), Gaps = 7/121 (5%)
Query: 117 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK-------EKKVDKEK 169
D ++ I D K ++E + KD+K ++ + + + +
Sbjct: 909 DPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQ 968
Query: 170 EKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 229
+ + + + + + E + +E + ++ L L+ +
Sbjct: 969 QTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLAT 1028
Query: 230 K 230
+
Sbjct: 1029 R 1029
Score = 29.3 bits (65), Expect = 3.7
Identities = 21/145 (14%), Positives = 47/145 (32%), Gaps = 2/145 (1%)
Query: 147 DKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 206
D D I+ + D D EK + + + + + K + +
Sbjct: 871 DGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLD 930
Query: 207 KEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIK 266
+E K KD+K +E + + + +I F D + + + + K ++
Sbjct: 931 EEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPS--DLTIKDIVL 988
Query: 267 PVKSPSPPPVAAADEYDTGDSKQVW 291
VK + + + + Q
Sbjct: 989 GVKDLQENLLVLRGKNEIIQNAQRD 1013
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 31.2 bits (70), Expect = 0.53
Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 9/103 (8%)
Query: 137 KEKEKIKKKKDKKD-------KDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKE 189
+ KEK+ +K + K ++ ++ ++K+K+++K + E+ + KE
Sbjct: 16 RYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKE 75
Query: 190 DKEKPVEKIRKEEKDSEKEKKSKDK--DKKLKKEKLKKKKKEK 230
K + E+ + K K D LK +K+K K++
Sbjct: 76 HKTTKMSNKSNEKSGNVLPKDKPYKTLDDYLKLDKIKDLSKQE 118
Score = 28.2 bits (62), Expect = 5.2
Identities = 13/82 (15%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 158 EKDKEKKVDKEKEKGKK-----EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 212
++ KEK + K K +G + +++ + +E K + +K P+ ++ + + +K
Sbjct: 15 DRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNK 74
Query: 213 DKDKKLKKEKLKKKKKEKERSS 234
+ K +K
Sbjct: 75 EHKTTKMSNKSNEKSGNVLPKD 96
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 31.4 bits (70), Expect = 0.53
Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 1/110 (0%)
Query: 116 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKE 175
E + E KK + K K KKK + +K K ++ + K K
Sbjct: 2 EAVPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFAL 61
Query: 176 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 225
+ +K ++ ++ + ++ R+ + + + K K
Sbjct: 62 KTLRKARRKLIYEK-AKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPK 110
Score = 29.5 bits (65), Expect = 2.2
Identities = 22/107 (20%), Positives = 41/107 (38%)
Query: 106 VPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKV 165
VP K ++ KK + K K E +KKK+ + K+K K K
Sbjct: 4 VPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFALKT 63
Query: 166 DKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 212
++ + EK K KE++ E + ++ ++ + + K
Sbjct: 64 LRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPK 110
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 31.0 bits (70), Expect = 0.55
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 131 KKTHKKKEKEKIKKKKDKKDKDKIKN---KEKDKEKKVDKEKEKGKKEEKEKKEEK 183
K++ +IK+ + D K+ + +K+++K++ +++K + E+EK EE
Sbjct: 75 KESGGPLNGIEIKEF-SRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 30.5 bits (68), Expect = 0.56
Identities = 23/109 (21%), Positives = 41/109 (37%)
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE 181
K + I + +K K KK K + +++ + + KK
Sbjct: 46 VKAQKITWTIARRRLWKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKA 105
Query: 182 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 230
E E ++E K+K I K+ D + + K KK + +K K+ K
Sbjct: 106 EAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAK 154
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 31.2 bits (71), Expect = 0.67
Identities = 4/58 (6%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 121 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKD----KDKIKNKEKDKEKKVDKEKEKGKK 174
+ + S + E+ ++ D + + + + + +G+
Sbjct: 264 LARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 30.4 bits (69), Expect = 0.83
Identities = 34/175 (19%), Positives = 67/175 (38%), Gaps = 37/175 (21%)
Query: 66 KVSPKDKTSPKEKMSSKEKTSPKEK--------EYSKVKDVELGVTPMVPNIV---KVTS 114
KV+PK +T +P+EK + S VKD L V V V +V +
Sbjct: 57 KVTPKGETQL----------TPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFT 106
Query: 115 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKK 174
++KDK+ E E+++ K+ KKD + + +
Sbjct: 107 R---------DGVEKDKRA---LEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVLVAGG 154
Query: 175 EEKEKKEEKE----FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 225
E EK ++ ++ E+ ++ + + ++ K +K + K+ K+ +
Sbjct: 155 VEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 209
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta
protein, PIK3C3, compound 15E, structural genomics, SGC
stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Length = 614
Score = 31.0 bits (69), Expect = 0.85
Identities = 16/125 (12%), Positives = 39/125 (31%), Gaps = 17/125 (13%)
Query: 128 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKE-FK 186
K + ++ + ++ + +++KK ++ + EK + E
Sbjct: 268 KSVRVMRSLLAAQQTFVDRLVHLMKAVQRESGNRKKKNERLQALLGDNEKMNLSDVELIP 327
Query: 187 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFK 246
+ + + + I E + KS +L + E + FK
Sbjct: 328 LPLEPQVKIRGIIPE---TATLFKSALMPAQLFFK-------------TEDGGKYPVIFK 371
Query: 247 FGTDM 251
G D+
Sbjct: 372 HGDDL 376
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 30.6 bits (68), Expect = 0.86
Identities = 19/110 (17%), Positives = 45/110 (40%), Gaps = 3/110 (2%)
Query: 125 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEK--GKKEEKEKKEE 182
K+ +KD + K K+ + + K K K K+++ K+ +E+
Sbjct: 111 KNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAK-KMKELEAAKKAYHLACKEERLAMT 169
Query: 183 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 232
+E K ++ E+ +K +K ++ K ++ ++ L+ K +
Sbjct: 170 REMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQ 219
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 30.9 bits (70), Expect = 0.89
Identities = 29/138 (21%), Positives = 56/138 (40%), Gaps = 17/138 (12%)
Query: 110 VKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDK--DKIKNKEKDKEKKVDK 167
V+ S ++K K + +++ + D+KDK +K+ + KD +++ +K
Sbjct: 204 VEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNK 263
Query: 168 EKEKGKKEEKEKKEEKE-FKMKEDKEKP-------------VEKIRKEEKDSEKEKKSKD 213
+ E KE + F K + KE + +E + K
Sbjct: 264 LRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK-RRETEEKM 322
Query: 214 KDKKLKKEKLKKKKKEKE 231
+ KL KEK +K++ EK+
Sbjct: 323 RRAKLAKEKAEKERLEKQ 340
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 30.8 bits (69), Expect = 0.91
Identities = 18/96 (18%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 129 KDKKTHKKKEKEKIKKKKDKKDKDKIKN---KEKDKEKKVDKEKEKGKKEEKEKKEEKEF 185
+ + K + I++ + D + I +++K+ KE++K KE+++ + E
Sbjct: 83 ESWREILDKRQHPIRRL-ELCDFEPIYQWHLVQREKKLSRTKEEKKAIKEKQDAEAEPYR 141
Query: 186 KMKED-KEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 220
D + + V R E + + KLK
Sbjct: 142 YCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKV 177
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 30.6 bits (68), Expect = 1.1
Identities = 10/63 (15%), Positives = 20/63 (31%)
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE 181
+ K+ ++ K KK + ++ K +E + +E KE
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIKE 407
Query: 182 EKE 184
E
Sbjct: 408 GDE 410
Score = 29.0 bits (64), Expect = 3.2
Identities = 13/72 (18%), Positives = 28/72 (38%)
Query: 121 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKK 180
I K+++ K + + K++ +K K K K ++E ++E
Sbjct: 339 IVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADF 398
Query: 181 EEKEFKMKEDKE 192
+ ++KE E
Sbjct: 399 IAQGQEIKEGDE 410
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 30.7 bits (68), Expect = 1.3
Identities = 17/140 (12%), Positives = 54/140 (38%), Gaps = 1/140 (0%)
Query: 62 KMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEI 121
+++ +V KD + + + ++ +++ + + V D
Sbjct: 423 RIQQEVELKDSETRRLQEEVEDARRKQDEAAAALLAATTPQHHHVAERADTDPDHDNASD 482
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDK-IKNKEKDKEKKVDKEKEKGKKEEKEKK 180
+S D + + ++ ++++ + N+ K ++ + + ++ K+ +K
Sbjct: 483 AGSESGGGDLARGPDDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKI 542
Query: 181 EEKEFKMKEDKEKPVEKIRK 200
+ + DK K + +IRK
Sbjct: 543 HRENVRQGRDKYKTLREIRK 562
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 29.4 bits (65), Expect = 1.3
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 286 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSD-------WFCPKCS 338
D Q + C C + M G + C + CV L+ P + W C C
Sbjct: 76 DGYQSY-CTICC--GGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 30.3 bits (68), Expect = 1.4
Identities = 25/108 (23%), Positives = 40/108 (37%), Gaps = 2/108 (1%)
Query: 120 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKN-KEKDKEKKVDKEKEKGKKEEKE 178
E D K K K + K K +D K K + KE +KK + K+ K+ ++
Sbjct: 488 EWGDDYCQDKTKMIETLKVECKEKPCEDDNCKRKCNSYKEWISKKKEEYNKQA-KQYQEY 546
Query: 179 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 226
+K E K E K+ + +D+ K+ K K
Sbjct: 547 QKGNNYKMYSEFKSIKPEVYLKKYSEKCSNLNFEDEFKEELHSDYKNK 594
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 29.5 bits (65), Expect = 1.6
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 286 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG-LVAEPETSDWFCPKC 337
D + W C C Q+ G L + C+ C +H C + + DW C C
Sbjct: 4 DPNEDW-CAVC--QNGGDL--LCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 51
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 29.8 bits (66), Expect = 1.6
Identities = 12/73 (16%), Positives = 27/73 (36%)
Query: 140 EKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIR 199
E KK + K + + +K ++++ E+ +KE++ E ++
Sbjct: 10 ESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDA 69
Query: 200 KEEKDSEKEKKSK 212
K E + K
Sbjct: 70 KAAGSYYVEAQHK 82
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 30.1 bits (67), Expect = 1.7
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 8/132 (6%)
Query: 116 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKE 175
+ G I+ ++ D I +D + + EK K+ E K
Sbjct: 507 SEFG-IRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVVGDAPEKVGPKQAEDAAKS 565
Query: 176 EKEKKEE--KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK-----KEKLKKKKK 228
++ + ++ V + +E+DS ++++ K KE L K+
Sbjct: 566 ITNGSDDGAQPSTSTAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLSAKRS 625
Query: 229 EKERSSHEKEVI 240
E+ +VI
Sbjct: 626 RIEQKEELDDVI 637
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting,
protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54
Length = 566
Score = 30.0 bits (66), Expect = 1.8
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 260 SPKIVIKPVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAW 315
+ + K + S A+ + ICPAC + + C+ C
Sbjct: 150 ADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGN--CEICGHR 203
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 29.8 bits (66), Expect = 1.9
Identities = 18/140 (12%), Positives = 51/140 (36%), Gaps = 2/140 (1%)
Query: 115 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKK 174
++L + K+ + + ++K + K + KV+K K
Sbjct: 87 KDNLCNDVNSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHS 146
Query: 175 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 234
K ++ + + + +K ++ +K+KD+ +K +++ + + + +S
Sbjct: 147 ACKTERSATN-QERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNS 205
Query: 235 HEKEVIPKLTFKFGTDMEEK 254
E + + K E+
Sbjct: 206 VYIEDMTSVFEKCQ-TFEKT 224
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 30.0 bits (67), Expect = 2.0
Identities = 12/120 (10%), Positives = 35/120 (29%)
Query: 114 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGK 173
+ + + SI+ D ++E + D++ K + D + ++
Sbjct: 908 MEDRSLSLYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRII 967
Query: 174 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 233
+ + + K + + E + D+ + + + RS
Sbjct: 968 QNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRS 1027
Score = 29.3 bits (65), Expect = 3.9
Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 2/98 (2%)
Query: 125 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKE 184
+ K K + ++ +D K++ K K V + +
Sbjct: 110 WNCGKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVC-KTKMVCDTGLSAGSDNFDLSNPSA 168
Query: 185 FKMKEDKEKPVEKIRKEEKDSEKE-KKSKDKDKKLKKE 221
IRK+ K+ KD+ +K
Sbjct: 169 NMGHGGCGAAQPTIRKDGLRLWGSWKRGKDESDLPEKR 206
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 29.9 bits (66), Expect = 2.1
Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 7/121 (5%)
Query: 119 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKD-----KDKIKNKEKDKEKKVDKEKEKGK 173
+ + D K + K EK K +K+K K K + N+ DK ++ +K
Sbjct: 8 AAAMNEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKIP 67
Query: 174 KE--EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 231
K+ E + E + ++++ ++ + S+ + + +KK+E
Sbjct: 68 KDVLEIYSELGGEIYFTDIDLVEHKELQDLSEEEKNSMNSRGEKVPFASRFVFEKKRETP 127
Query: 232 R 232
+
Sbjct: 128 K 128
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 29.4 bits (65), Expect = 2.1
Identities = 9/78 (11%), Positives = 34/78 (43%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKP 194
K EK+ K+ +++ + K+K +K+ + + ++ E++ ++ +
Sbjct: 7 KVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQ 66
Query: 195 VEKIRKEEKDSEKEKKSK 212
+++ + + ++K
Sbjct: 67 LKREARMKGGFYVSPEAK 84
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 29.8 bits (66), Expect = 2.2
Identities = 30/189 (15%), Positives = 70/189 (37%), Gaps = 22/189 (11%)
Query: 69 PKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIK 128
+P + + + S E ++KV L P++ + + + ++K
Sbjct: 254 TNASKNPNKGVGATNGVSHLEAGFNKVAVFNL------PDLNNLAITSFVRRNLENKLTA 307
Query: 129 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMK 188
K +E K KD +K + K E + ++ KK +K+ +
Sbjct: 308 KGLS-----LQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQKDLEKS 362
Query: 189 EDKEKPVEKIRKEEKDSEKEKKS-----------KDKDKKLKKEKLKKKKKEKERSSHEK 237
K + +EK +++ +S+ K+ KD+ L ++ + + + + K
Sbjct: 363 LRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLK 422
Query: 238 EVIPKLTFK 246
+ +L+ K
Sbjct: 423 GIKRELSDK 431
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 29.8 bits (66), Expect = 2.2
Identities = 9/67 (13%), Positives = 23/67 (34%)
Query: 176 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 235
EKE E + E ++ ++ + + + KK K E +
Sbjct: 293 EKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVG 352
Query: 236 EKEVIPK 242
++++ +
Sbjct: 353 TEQLVAE 359
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid
cyclase fold, DDXXXXD motif, NDXXSXXXE MOT
methylisoborneol biosynthesis; HET: GST; 1.80A
{Streptomyces coelicolor} PDB: 3v1x_A*
Length = 433
Score = 29.7 bits (66), Expect = 2.2
Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 6/78 (7%)
Query: 9 QAVVRQSAPMFPFQFSPFPSVAGPGLIPRLPPMLQHPLIPQPLVHPPGTPPPSKMKDKVS 68
V R S + P S + A L PP +P P PP P D V+
Sbjct: 13 GLVPRGSHMVIPSA-SVTSA-ASDFLAALHPP----VTVPDPAPPPPPAPAAGNPPDTVT 66
Query: 69 PKDKTSPKEKMSSKEKTS 86
+ + T+
Sbjct: 67 GDSVLQRILRGPTGPGTT 84
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 29.2 bits (65), Expect = 2.5
Identities = 17/123 (13%), Positives = 45/123 (36%)
Query: 116 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKE 175
E+ + I + ++ E + K + +++ K + EK K++
Sbjct: 160 RKYEEVARKLVIIESDLERAEERAELSEGKCAELEEEIKTVTNNLKSLEAQAEKYSQKED 219
Query: 176 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 235
+ E++ + ++ E E + EK + + +K K K +E + + +
Sbjct: 220 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEELDHALN 279
Query: 236 EKE 238
+
Sbjct: 280 DMT 282
Score = 29.2 bits (65), Expect = 2.7
Identities = 21/123 (17%), Positives = 50/123 (40%)
Query: 116 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKE 175
+ + + K + + + KE + I + D+K ++ + + E+ E
Sbjct: 128 KVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSE 187
Query: 176 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 235
K + E+E K + K +E ++ E + + + K K ++ + + + ERS
Sbjct: 188 GKCAELEEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVT 247
Query: 236 EKE 238
+ E
Sbjct: 248 KLE 250
Score = 28.5 bits (63), Expect = 4.1
Identities = 20/103 (19%), Positives = 52/103 (50%)
Query: 136 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPV 195
K +KE + D+ + DK +++ K+ + + + K + E + +K + +D ++ +
Sbjct: 12 KLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKL 71
Query: 196 EKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 238
E K+ D+E + S ++ +L +E+L + ++ + + E
Sbjct: 72 ELAEKKATDAEADVASLNRRIQLFEEELDRAQERLATALQKLE 114
Score = 28.1 bits (62), Expect = 5.2
Identities = 16/118 (13%), Positives = 50/118 (42%)
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE 181
K ++ ++ + K+ + + ++ + + ++ ++ E + + E +E
Sbjct: 136 KDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEE 195
Query: 182 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 239
E + K + + +K+ + E++ K KLK+ + + + E+ + EK +
Sbjct: 196 EIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSI 253
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 29.4 bits (65), Expect = 2.7
Identities = 25/176 (14%), Positives = 59/176 (33%), Gaps = 14/176 (7%)
Query: 49 QPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPN 108
P PP +P P KDK++P + E + ++ P ++ + + V +
Sbjct: 48 CPPPRPPSSPYPPLPKDKLNPPTPSIYLE--NKRDAFFPPLHQFCTNPNNPVTVIRGLAG 105
Query: 109 IVKVT----SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK 164
+K+ S++ L E + ++ + + + + D K + +
Sbjct: 106 ALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPAD--------ENWDPTGTKKIWHCESNR 157
Query: 165 VDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 220
K + + +E + E + + E S+ + + K K
Sbjct: 158 SHTTIAKYAQYQASSFQESLREENEKRSHHKDHSDSESTSSDNSGRRRKGPFKTIK 213
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 29.3 bits (65), Expect = 2.8
Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 6/114 (5%)
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE 181
+ + K + K +I K +K + + +K + K + K
Sbjct: 184 VRASDEGESSKYKPEDHKARIFGKHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKVDSV 243
Query: 182 EKEFK--MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL----KKEKLKKKKKE 229
EK F E ++ P ++ D K K KL +K+++K K +
Sbjct: 244 EKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQL 297
>3ed3_A Protein disulfide-isomerase MPD1; thioredoxin-like domain, CXXC,
endoplasmic reticulum, glycoprotein, redox-active
center; 2.00A {Saccharomyces cerevisiae}
Length = 298
Score = 29.0 bits (64), Expect = 2.8
Identities = 22/161 (13%), Positives = 60/161 (37%), Gaps = 8/161 (4%)
Query: 82 KEKTSPKEKEYSKVKDVELGVTPM-VPNIVKVTSSEDLGEIKKDKSIKKDKK------TH 134
+ K++ ++ + + ++V + + + + K ++ K ++
Sbjct: 138 LSRIRSYVKKFVRIDTLGSLLRKSPKLSVVLFSKQDKISPVYKSIALDWLGKFDFYSISN 197
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKE-DKEK 193
KK ++ +K + K +K ++ +K K + +K + E++ +K
Sbjct: 198 KKLKQLTDMNPTYEKTPEIFKYLQKVIPEQRQSDKSKLVVFDADKDKFWEYEGNSINKND 257
Query: 194 PVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 234
+ +R + E + + + K KK +K SS
Sbjct: 258 ISKFLRDTFSITPNEGPFSRRSEYIAYLKTGKKPIKKNHSS 298
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 29.1 bits (65), Expect = 2.8
Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 6/95 (6%)
Query: 134 HKKKEKEKIKKKKDKKDKDKIKN---KEKD-KEKKVDKEKEKGKKEEKEKKEEK--EFKM 187
+ + E ++ K + +++++ EK E+++ ++ K + + + +F
Sbjct: 285 PEVLDPESVELKWSEPNEEELIKFMCGEKQFSEERIRSGVKRLSKSRQGSTQGRLDDFFK 344
Query: 188 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 222
++ E K S K+K K K+ K
Sbjct: 345 VTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial
promoter opening, G-quartet, quadruplex, DNA binding;
2.10A {Thermus aquaticus} PDB: 3ugp_A 1ku2_A 3lev_A*
3les_A*
Length = 245
Score = 28.7 bits (64), Expect = 3.0
Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 168 EKEKGKKEEKEKKEEKE-FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 226
E G+ +EE + + E+ + ++K+ + ++ + + K L +++K
Sbjct: 13 LHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKI 72
Query: 227 KKEKER 232
KE+
Sbjct: 73 PGLKEK 78
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Length = 282
Score = 29.0 bits (65), Expect = 3.1
Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 123 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEE 182
+ ++ T +E+ + K ++ + +KNK ++V+ E K+ E+E E+
Sbjct: 83 GPQKLEVRAATGNHEERFSVGSKHYREQRITLKNK-----RQVNPLPEDLKRIERELAEQ 137
Query: 183 KEFKMKEDKEKP 194
+ P
Sbjct: 138 TAAYRRFSPGLP 149
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 29.2 bits (66), Expect = 3.1
Identities = 9/47 (19%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 134 HKKKEKEKI-KKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEK 179
+ +K K ++ K+K+ + K+ K K+ + KK
Sbjct: 726 YDLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
Score = 29.2 bits (66), Expect = 3.5
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 126 SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEK 171
+ +K K E+IK+K D+ ++ K +K +
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHH 772
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 28.3 bits (63), Expect = 3.2
Identities = 12/89 (13%), Positives = 38/89 (42%)
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE 181
++ K + + ++ + ++ K K K + EK V +++ ++ + ++
Sbjct: 26 NTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQAFEQ 85
Query: 182 EKEFKMKEDKEKPVEKIRKEEKDSEKEKK 210
++ + E++ K V +I+ K +
Sbjct: 86 DRARRSNEERGKLVTRIQTAVKSVANSQD 114
Score = 26.8 bits (59), Expect = 9.5
Identities = 10/92 (10%), Positives = 29/92 (31%)
Query: 131 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKED 190
E E + + + + + K + + ++ K E+ + + F K
Sbjct: 22 TGVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQ 81
Query: 191 KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 222
+ R E+ + + + K + +
Sbjct: 82 AFEQDRARRSNEERGKLVTRIQTAVKSVANSQ 113
Score = 26.8 bits (59), Expect = 9.8
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Query: 168 EKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 227
E E + + ++ E + + K ++K++ + S++ K KD + + K +
Sbjct: 29 ENEFKGRASELQRMETDLQAK------MKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQA 82
Query: 228 KEKERSSHEKEVIPKL 243
E++R+ E KL
Sbjct: 83 FEQDRARRSNEERGKL 98
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 29.0 bits (65), Expect = 3.3
Identities = 14/108 (12%), Positives = 38/108 (35%), Gaps = 16/108 (14%)
Query: 135 KKKEKEKIKKK-KDKKDKDKIKNKEKDKEKKVDKEKEK---GKKEEKEK---KEEKEFKM 187
+ + E + K + +K + + K KK+E + + + +K
Sbjct: 191 RNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNYKE 250
Query: 188 KEDKEKPVEKIRKE---------EKDSEKEKKSKDKDKKLKKEKLKKK 226
+ ++K + K+ + + E + K+ + L ++K
Sbjct: 251 TKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPYETLDDTEVKNN 298
Score = 28.6 bits (64), Expect = 3.6
Identities = 16/105 (15%), Positives = 38/105 (36%), Gaps = 8/105 (7%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEK-----KVDKEKEKGKKEEKEK---KEEKEFK 186
K+ E + K N DK++ K KK+E + + + +K
Sbjct: 190 KRNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNYK 249
Query: 187 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 231
+ ++K + K++ + E S+ + + + + + E
Sbjct: 250 ETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPYETLDDTE 294
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 28.9 bits (64), Expect = 3.5
Identities = 0/114 (0%), Positives = 0/114 (0%), Gaps = 7/114 (6%)
Query: 134 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEK 193
+++ K + + K K+ ++ + ++ K K
Sbjct: 94 AERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVL 153
Query: 194 PVEKIRKEEKDSEKEKKSKDKDKKLKKEK-------LKKKKKEKERSSHEKEVI 240
K ++ + ++ K+
Sbjct: 154 LDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIPSET 207
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 29.0 bits (66), Expect = 3.6
Identities = 10/87 (11%), Positives = 24/87 (27%), Gaps = 8/87 (9%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKP 194
K + + ++ V + E K E + + +
Sbjct: 229 VTKRTPQKLFTPSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDE-------AVNKIRLDT 281
Query: 195 VEKIRKEEKDSEKEKKSKDKDKKLKKE 221
E++ KE+ + + + KE
Sbjct: 282 EEQL-KEKFPEADPYEIIESFNVVAKE 307
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 28.7 bits (64), Expect = 3.6
Identities = 19/120 (15%), Positives = 44/120 (36%), Gaps = 3/120 (2%)
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK-EKKVDKEKEKGKKEEKEKK 180
+IK ++H ++E +K + K ++ K+ D + ++ + +E+
Sbjct: 121 VTRDTIKAKGRSHATAQEEILKLSEVFKQF-RLVPKQFDYLVNSMRVMMDRVRTQERLIM 179
Query: 181 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 240
+ + K K+ + E + K EKL +E R+ + + I
Sbjct: 180 KLCVEQCKMPKKNFITLFTGNETSDTWFNAAI-AMNKPWSEKLHDVSEEVHRALQKLQQI 238
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA
complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP:
c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A*
2pyj_A* 2pyl_A* 2pzs_A*
Length = 575
Score = 29.1 bits (64), Expect = 3.7
Identities = 16/96 (16%), Positives = 28/96 (29%), Gaps = 14/96 (14%)
Query: 103 TPMVPNIVKVTSSEDLGEIKKDKSIKK--------------DKKTHKKKEKEKIKKKKDK 148
T + I + + LG + + K+ K+ K + D
Sbjct: 465 TEIPDVIKDIVDPKKLGYWAHESTFKRAKYLRQKTYIQDIYMKEVDGKLVEGSPDDYTDI 524
Query: 149 KDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKE 184
K K +K+V E K K K + +
Sbjct: 525 KFSVKCAGMTDKIKKEVTFENFKVGFSRKMKPKPVQ 560
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 29.1 bits (66), Expect = 3.8
Identities = 25/118 (21%), Positives = 48/118 (40%), Gaps = 19/118 (16%)
Query: 129 KDKKTHKKKEKEKIKKKKDKK-DKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE------ 181
KDK + K+ +KI K ++D+I+ +D E + E ++ E + +
Sbjct: 489 KDKNSGKE---QKITIKASSGLNEDEIQKMVRDAEA--NAEADRKFDELVQTRNQGDHLL 543
Query: 182 ---EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 236
K+ + DK +K E + E K +D K ++ K +E + S +
Sbjct: 544 HSTRKQVEEAGDKLPADDKTAIESALTALETALKGED----KAAIEAKMQELAQVSQK 597
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 29.2 bits (65), Expect = 3.9
Identities = 22/127 (17%), Positives = 42/127 (33%), Gaps = 20/127 (15%)
Query: 136 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPV 195
K+ E K + K+ K K +V EK K +E ++ E +
Sbjct: 847 KEIIEVAKIENAKRAYIYTAEDWKWKVAEVVSEKRDFKSSMEELMKDSEIR--------- 897
Query: 196 EKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKT 255
+ K+ +KL KE+ K+ E + +E + + G ++
Sbjct: 898 ----------KHGKEVAKIVQKLIKERTFDVKRINEEKA-LREAKEFMEKELGIEIIINP 946
Query: 256 KRESSPK 262
+ K
Sbjct: 947 TEDKGGK 953
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 27.7 bits (61), Expect = 4.0
Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 6/110 (5%)
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE 181
+ + ++ K + E+ +K ++ + + K + + + + K E+ K KE
Sbjct: 38 PRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFIKMAKE 97
Query: 182 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 231
+ KM+ +KE +E + ++ ++KDK ++ + K+ KE+
Sbjct: 98 KLAQKMESNKEN------REAHLAAMLERLQEKDKHAEEVRKNKELKEEA 141
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 28.9 bits (65), Expect = 4.2
Identities = 7/48 (14%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 165 VDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 212
+D+ +E ++ + + + ++ D+E+ I+ E+ +E+
Sbjct: 725 IDRFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEE---REELRT 769
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.5 bits (61), Expect = 4.3
Identities = 22/105 (20%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 136 KKEKEKIKKKKDKKDKDKIKNKE-KDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKP 194
KE+ + K+ +K + + KE ++K + +EK + + + +++ + +
Sbjct: 16 ASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLI 75
Query: 195 VEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 239
KI+ E K E K+ +D+++ + KK+K E E S ++++
Sbjct: 76 KNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDI 120
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 28.7 bits (64), Expect = 4.4
Identities = 17/70 (24%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKP 194
KK E E K D + K+K + +KD + ++ K E K + + K ++ +
Sbjct: 234 KKTEYEIQTNKYDNEFKNK-NSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWKNPYET 292
Query: 195 VEKIRKEEKD 204
+E K + D
Sbjct: 293 LEDTFKSKCD 302
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein,
translation; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 27.0 bits (60), Expect = 5.0
Identities = 13/46 (28%), Positives = 21/46 (45%)
Query: 184 EFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 229
F E +K VE ++ K+++ KD K E+ K+ K E
Sbjct: 58 VFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERKQNKVE 103
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 28.1 bits (62), Expect = 5.2
Identities = 10/73 (13%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 114 SSEDLGEIKKD--KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEK 171
++ + + K +I+ D K +KE K+ K + ++ ++++
Sbjct: 232 DADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSS 291
Query: 172 GKKEEKEKKEEKE 184
++ +++E+ E
Sbjct: 292 AGADDDDEEEDDE 304
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 28.2 bits (63), Expect = 5.2
Identities = 12/76 (15%), Positives = 40/76 (52%)
Query: 167 KEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 226
K+ + +E ++K + F KED+++ +I ++E++ + + D+ + + + ++
Sbjct: 15 KKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNEFDARERA 74
Query: 227 KKEKERSSHEKEVIPK 242
++E+E + + +
Sbjct: 75 EREREAARGDAAAEKQ 90
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 28.0 bits (63), Expect = 5.6
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 182 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 225
E + + + + + DS K +++ D +KK + + K
Sbjct: 231 ENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKV 274
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 28.0 bits (63), Expect = 5.7
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 19/118 (16%)
Query: 129 KDKKTHKKKEKEKIKKKKDKK-DKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE------ 181
KDK + K+ +KI K ++D+I+ +D E + E ++ +E + +
Sbjct: 101 KDKNSGKE---QKITIKASSGLNEDEIQKMVRDAEA--NAEADRKFEELVQTRNQGDHLL 155
Query: 182 ---EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 236
K+ + DK +K E + E K +D K ++ K +E + S +
Sbjct: 156 HSTRKQVEEAGDKLPADDKTAIESALTALETALKGED----KAAIEAKMQELAQVSQK 209
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 28.3 bits (63), Expect = 5.7
Identities = 11/85 (12%), Positives = 28/85 (32%)
Query: 129 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMK 188
T KK + + + K + ++E + E + E +
Sbjct: 232 DQWITRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKRDG 291
Query: 189 EDKEKPVEKIRKEEKDSEKEKKSKD 213
E V + + +K++++ + D
Sbjct: 292 AYIELCVCSVEEAKKNTQEVVTNVD 316
Score = 27.9 bits (62), Expect = 6.1
Identities = 12/94 (12%), Positives = 24/94 (25%), Gaps = 9/94 (9%)
Query: 136 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPV 195
K + I +KK++ D K K K + + +E E
Sbjct: 229 KSYDQWITRKKNQWDVLS---------NKFISVKNAEKVQTAGIVTPYDILKQELDEFNE 279
Query: 196 EKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 229
E + + +K ++
Sbjct: 280 VAFENEINKRDGAYIELCVCSVEEAKKNTQEVVT 313
Score = 27.5 bits (61), Expect = 9.9
Identities = 18/113 (15%), Positives = 37/113 (32%)
Query: 157 KEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 216
E E + KEK GK +KK K + + + I +++ + K
Sbjct: 194 SELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKKNQWDVLSNKFISVK 253
Query: 217 KLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVK 269
+K + + E + ++ F+ + + E V + K
Sbjct: 254 NAEKVQTAGIVTPYDILKQELDEFNEVAFENEINKRDGAYIELCVCSVEEAKK 306
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 6.0
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 176 EKE--KKEEKEFKMKEDKEKPVEKIR 199
EK+ KK + K+ D P I+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 27.8 bits (62), Expect = 6.1
Identities = 6/79 (7%), Positives = 29/79 (36%), Gaps = 9/79 (11%)
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEK---------KVDKEKEKG 172
+ +K + + + + ++ I+++ + +++ ++ K +E
Sbjct: 3 QGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELA 62
Query: 173 KKEEKEKKEEKEFKMKEDK 191
+ + + E + E +
Sbjct: 63 AAKAQIAELEAKLSEMEHR 81
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase
subunit A', DNA-directed...; transcription, fusion
protein, chimera protein, multiprotein; 3.30A
{Pyrococcus furiosus}
Length = 436
Score = 28.1 bits (63), Expect = 6.1
Identities = 10/71 (14%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 120 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEK 179
EI++ + + + + E IK+ K + + + + EK + +
Sbjct: 173 EIEEYMKKIELARNRRSEFNEIIKEIHKKAKERMVCPHCGAPQYPIKFEKPT--IYWEIR 230
Query: 180 KEEKEFKMKED 190
K+E+ + +
Sbjct: 231 KDEQGNEYRHR 241
>2i71_A Hypothetical protein; structural genomics, APC6294, PSI-2, protein
structure initia midwest center for structural genomics,
MCSG; 1.70A {Sulfolobus solfataricus} SCOP: e.72.1.1
Length = 400
Score = 28.3 bits (62), Expect = 6.3
Identities = 14/92 (15%), Positives = 34/92 (36%), Gaps = 9/92 (9%)
Query: 111 KVTSSEDLGEIKKDKSIKKDKKTHK--KKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKE 168
+ + + DL ++ DK T + E +KI+K + ++ + K + K DK
Sbjct: 302 RFSGNVDLDTLRHYAETYADKVTRAIIENEVDKIEKYQMGSERKLLGEYMKVEGKGFDKR 361
Query: 169 K-------EKGKKEEKEKKEEKEFKMKEDKEK 193
++K++ + ++
Sbjct: 362 ILYAHGGLPYAGTYVYKEKDKVYVTYGDKIDE 393
>3vuu_A Erythrocyte membrane protein, putative; duffy binding-like domain,
erythrocyte binding, merozoite SU malaria, cell
adhesion; 2.09A {Plasmodium falciparum}
Length = 305
Score = 27.9 bits (62), Expect = 6.3
Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 3/100 (3%)
Query: 135 KKKEKEKIKKK---KDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDK 191
+K +K K + + + E K+ + K K E E +K +
Sbjct: 206 SEKNMNTLKAVCFPKQPRTEANPALTVHENEMCSSTLKKYEEWYNKRKTEWTEQSIKYNN 265
Query: 192 EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 231
+K K SE + + K KK + +
Sbjct: 266 DKINYTDIKTLSPSEYLIEKCPECKCTKKNLQDVFELTFD 305
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 27.6 bits (61), Expect = 7.2
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 151 KDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 210
+ + ++ + D + EE E++ +E +E E+ ++ EE+ E
Sbjct: 185 RGALVDRTQPWSIMPDLYFYR-DPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWA 243
Query: 211 SKDKDK 216
++ D
Sbjct: 244 EENADN 249
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural
genomics, PSI-biology, protei structure initiative; NMR
{Shigella flexneri}
Length = 123
Score = 26.9 bits (59), Expect = 7.3
Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 135 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKP 194
K+ EK +IK+ D+ D I++++ D +K ++EK E + +++E +
Sbjct: 5 KEVEKNEIKRLSDRLDA--IRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQK 62
Query: 195 VEKIRKEEKD 204
+ K ++
Sbjct: 63 LSKEAQKLMK 72
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 28.0 bits (63), Expect = 7.3
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 189 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFG 248
DK +P K +K KK K K+ ++LKK+ + E+ K G
Sbjct: 7 SDKYEPAATSENATKSKKKGKKDKIDKKR-DLDELKKEVSMDDHKLSLDELHNKY----G 61
Query: 249 TDMEE 253
TD+
Sbjct: 62 TDLTR 66
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 28.0 bits (63), Expect = 7.3
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 182 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIP 241
+ +++ + + P K S+K+ +K K E +KK+ + + E+
Sbjct: 4 AENYELYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEINDHQLSVAELEQ 63
Query: 242 KL 243
K
Sbjct: 64 KY 65
>3bbn_E Ribosomal protein S5; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 308
Score = 27.9 bits (62), Expect = 7.4
Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 2/139 (1%)
Query: 73 TSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKK 132
+ + T SK + L T P + +D+ ++ ++
Sbjct: 17 LHRRIPLFPTTTTLLSLSSSSKPLFLSLSSTRSFPTHLYCIKKDDIDITFFEQDNPDEEI 76
Query: 133 THKKKEKEKIKKKKDKKDKDKIKNKEK--DKEKKVDKEKEKGKKEEKEKKEEKEFKMKED 190
T EK + D+ +++E+ +++ G+ + K+K+
Sbjct: 77 TFDPPEKPEGYIPPRAVDEPPFESEEEIALAYEELYGAAYSGESLLGNDVYAMDSKIKKA 136
Query: 191 KEKPVEKIRKEEKDSEKEK 209
+ +++ +D +E
Sbjct: 137 TGFGSKSKKEKIRDGFEEN 155
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 27.3 bits (60), Expect = 7.7
Identities = 15/97 (15%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 132 KTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDK 191
K ++ K+ + + I+ K +K + D +E +E KE+ ++ + + K K
Sbjct: 71 KKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKK 130
Query: 192 EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 228
+ + + ++ + + + K K K+
Sbjct: 131 AEVAKS-----QKTQSKGGATQRGAKGPKIGGGGGKR 162
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 27.9 bits (62), Expect = 7.7
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 24/75 (32%)
Query: 293 CPACGVQ----D---DGSLPMIGCDGCDAWYHWVCVGLVAEPETSD----WFCPKCSKVD 341
C C + + SLP+ C+ L ++ E ++C C
Sbjct: 222 CLTCHKKSRTFEAFMYLSLPL---ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHC---- 274
Query: 342 EGSRKEKKKRGRKKK 356
+ +R KK
Sbjct: 275 ------RARRDSLKK 283
>2a1d_D Staphylocoagulase; prothrombin activator, hydrolase-hydrolase
inhibitor complex; HET: 0G6 NDG; 3.50A {Staphylococcus
aureus}
Length = 329
Score = 27.9 bits (61), Expect = 7.9
Identities = 14/81 (17%), Positives = 29/81 (35%)
Query: 124 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEK 183
D S K + E + ++ + D+ + K+ + K KEE + ++ +
Sbjct: 242 DSSKHHYKNHSEGFEALVKETREAVANADESWKTKTVKKYGESETKSPVVKEENKVEDPQ 301
Query: 184 EFKMKEDKEKPVEKIRKEEKD 204
K +E + EE
Sbjct: 302 SPKFDNQQEVKTTAGKAEETT 322
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase;
18.00A {Escherichia coli} PDB: 2y7h_A*
Length = 464
Score = 27.8 bits (62), Expect = 8.3
Identities = 17/89 (19%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 136 KKEKEKIKKKKDKKDK--DKIKNKEKDKEKKVDKEKE-------KGKKEEKEKKEEKEFK 186
KE+ +I ++ ++ D I+ + + +V+ + +G+ + + E +
Sbjct: 375 VKEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAFRGELTAQWRAENPDLI 434
Query: 187 MKEDK-EKPVEKIRKEEKDSEKEKKSKDK 214
E+ +EKI+ E S +K S+ K
Sbjct: 435 SGENSAAALLEKIKAERAASGGKKASRKK 463
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 27.3 bits (60), Expect = 8.5
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 106 VPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKV 165
+ KV S+ + DK ++KKT KK + ++ + DK+ + + +KD +K +
Sbjct: 126 IATSTKVDISKVNVQKFDDKYFAREKKTRAKKTEGELFES-DKEATKNLPDFKKDDQKVI 184
Query: 166 DKEKEKGKKEEKEKKE 181
D E K + K
Sbjct: 185 DAELIKAIDAVPDLKN 200
>1mw9_X DNA topoisomerase I; decatenase enzyme, toprim domain; HET: DNA;
1.67A {Escherichia coli} SCOP: e.10.1.1 PDB: 1mw8_X*
1cy1_A* 1cy0_A* 1cy2_A* 1cy4_A* 1cy6_A* 1cy7_A* 1cy8_A*
3pwt_A* 3px7_A* 1ecl_A 1cy9_A* 1cyy_A*
Length = 592
Score = 27.6 bits (62), Expect = 9.1
Identities = 8/67 (11%), Positives = 22/67 (32%), Gaps = 7/67 (10%)
Query: 148 KKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEK---KEEKEFKMK----EDKEKPVEKIRK 200
K+ + K K K+ + + ++ KEK V ++++
Sbjct: 39 TSGSAAKKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWEAHYEVLPGKEKVVSELKQ 98
Query: 201 EEKDSEK 207
+ ++
Sbjct: 99 LAEKADH 105
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer,
transferase, serine/threonine-protein kinase,
nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Length = 373
Score = 27.4 bits (61), Expect = 9.3
Identities = 20/129 (15%), Positives = 38/129 (29%), Gaps = 19/129 (14%)
Query: 43 QHPLIPQPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGV 102
L + L + + K ++ ++ + D+
Sbjct: 11 GVDLGTENLYFQSMKNSGDQDSRSGHNEAKEVWSNADLTERMPVKSKRTSALAVDIPAPP 70
Query: 103 TPMVPNIVKVTSSEDLGEIKKDKSIKKDKK--------THKKKEKE-------KIKKKKD 147
P IV G + ++ K + HK +E KI K +
Sbjct: 71 APFDHRIVTAKQ----GAVNSFYTVSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG 126
Query: 148 KKDKDKIKN 156
KDK+++KN
Sbjct: 127 MKDKEEVKN 135
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription
regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo
sapiens}
Length = 214
Score = 27.0 bits (59), Expect = 9.5
Identities = 18/79 (22%), Positives = 39/79 (49%)
Query: 139 KEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKEEKEFKMKEDKEKPVEKI 198
E+ ++ K ++K+K +++ + D EKE + KE + +MK +E+ +E
Sbjct: 127 AERFQEAKGDSPQEKLKTVKENWKNLSDSEKELYIQHAKEDETRYHNEMKSWEEQMIEVG 186
Query: 199 RKEEKDSEKEKKSKDKDKK 217
RK+ +K+ K ++
Sbjct: 187 RKDLLRRTIKKQRKYGAEE 205
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 26.9 bits (59), Expect = 9.6
Identities = 16/109 (14%), Positives = 40/109 (36%)
Query: 122 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKVDKEKEKGKKEEKEKKE 181
+ + I +K +K + ++ + K+ + +K + + K ++ + +K
Sbjct: 44 RNPRQINWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKA 103
Query: 182 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 230
++E ++ KE K ++ K K K K K +
Sbjct: 104 QREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPR 152
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.129 0.374
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,385,348
Number of extensions: 389745
Number of successful extensions: 4058
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2954
Number of HSP's successfully gapped: 845
Length of query: 444
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 347
Effective length of database: 3,993,456
Effective search space: 1385729232
Effective search space used: 1385729232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (26.4 bits)