BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5825
         (596 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XOX|A Chain A, Crystal Structure Of Pteridine Reductase (Ptr1) From
           Leishmania Donovani
 pdb|2XOX|B Chain B, Crystal Structure Of Pteridine Reductase (Ptr1) From
           Leishmania Donovani
          Length = 288

 Score = 35.8 bits (81), Expect = 0.072,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 10/110 (9%)

Query: 341 RCSQLKAILHVSTLYTHSYREDI----QEEFYP-PLFSYEDLAHVMQTTNQEELEILSSM 395
           RC+ L     V+  YTH  R D+       FYP PL   ++  HV    ++E +E  ++ 
Sbjct: 88  RCADL-----VAACYTHWGRCDVLVNNASSFYPTPLLRKDEDGHVPCVGDREAMEAAAAD 142

Query: 396 LFGGIYNNSYSFTKAIGESVVEKYLYKLPLAMVRPSIVVSTWKEPIVGWS 445
           LFG      Y   KA    V +    +        ++V +   +P++G++
Sbjct: 143 LFGSNAMAPYFLIKAFAHRVADTPAEQRGTNYSIVNMVDAMTSQPLLGYT 192


>pdb|1P33|A Chain A, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
 pdb|1P33|B Chain B, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
 pdb|1P33|C Chain C, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
 pdb|1P33|D Chain D, Pteridine Reductase From Leishmania Tarentolae Complex
           With Nadph And Mtx
          Length = 289

 Score = 32.0 bits (71), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 10/113 (8%)

Query: 338 LATRCSQLKAILHVSTLYTHSYREDI----QEEFYP-PLFSYEDLAHVMQTTNQEELEIL 392
           L +RCS L     V   Y H  R D+       FYP PL   +         ++E LE+ 
Sbjct: 86  LFSRCSAL-----VDACYMHWGRCDVLVNNASSFYPTPLLRKDAGEGGSSVGDKESLEVA 140

Query: 393 SSMLFGGIYNNSYSFTKAIGESVVEKYLYKLPLAMVRPSIVVSTWKEPIVGWS 445
           ++ LFG      Y   KA  + V +    +   +    ++V +   +P++G++
Sbjct: 141 AADLFGSNAIAPYFLIKAFAQRVADTRAEQRGTSYSIVNMVDAMTSQPLLGYT 193


>pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta
          Length = 919

 Score = 30.0 bits (66), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 333 RELLDLATRCSQLKAILHVSTLYTHSYREDIQEEFYPPLFSYEDLAHVMQTTNQEELEIL 392
           +E +DL T  ++     +VSTL+ H    + ++ ++P L   +     +  TN ++ + L
Sbjct: 710 KEAMDLGTEAAK-----YVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPDKFDKL 764

Query: 393 SSMLFGGIYNNSYSFTKAIGESVVEKYLYKL----PLAMVRPSI 432
                  +  +S S    +   V++K L +      LA VR +I
Sbjct: 765 DQKGLASVRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETI 808


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,643,666
Number of Sequences: 62578
Number of extensions: 357452
Number of successful extensions: 595
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 3
length of query: 596
length of database: 14,973,337
effective HSP length: 104
effective length of query: 492
effective length of database: 8,465,225
effective search space: 4164890700
effective search space used: 4164890700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)