RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5825
(596 letters)
>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif,
rossmann fold, short chain dehydrogenase/REDU family,
reductase; 2.30A {Mycobacterium tuberculosis}
Length = 478
Score = 156 bits (396), Expect = 8e-42
Identities = 53/312 (16%), Positives = 114/312 (36%), Gaps = 44/312 (14%)
Query: 239 IYILLRSKKNKTVQERLAEQFKDELFDRLKNEQADILQRKVHIISGDISQPSLGISSHDQ 298
+ L+R++ ++ + RL + F + L++ + R + +++GD S+P LG+
Sbjct: 103 LICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADR-LEVVAGDKSEPDLGLDQPMW 161
Query: 299 QFIQHHIHVIIHAAASLRFDELIQDAFTLNIQATRELLDLATRCSQLKAILHVSTLYTHS 358
+ + + +I+ +AA + + F N+ T EL+ +A ++LK +VST +
Sbjct: 162 RRLAETVDLIVDSAAMVNAFPY-HELFGPNVAGTAELIRIALT-TKLKPFTYVSTADVGA 219
Query: 359 YREDIQEEFYPPLFSYEDLAHVMQTTNQEELEILSSMLFGGIYNNSYSFTKAIGESVVEK 418
P ED + I + G + Y +K GE ++ +
Sbjct: 220 A--------IEPSAFTED---------ADIRVISPTRTVDGGWAGGYGTSKWAGEVLLRE 262
Query: 419 Y--LYKLPLAMVRPSIVVSTWKEPIVGWSNNLYGPGGAAAGAALGLI-------HTFYAK 469
L LP+A+ R ++++ ++ + A G+ + +
Sbjct: 263 ANDLCALPVAVFRCGMILADTSYAGQLNMSDWV-TRMVLSLMATGIAPRSFYEPDSEGNR 321
Query: 470 HDKKCDLIPVDVATNMMLGVVWKTALDHGHVAPPASLVAPIPRTDPPVYNLSISSSYPIT 529
D +PV + + + A Y++ I
Sbjct: 322 QRAHFDGLPVTFVAEAIAVLGARVAGS--------------SLAGFATYHVMNPHDDGIG 367
Query: 530 WLEYMNSVQAAG 541
EY++ + AG
Sbjct: 368 LDEYVDWLIEAG 379
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 64.9 bits (157), Expect = 5e-11
Identities = 80/500 (16%), Positives = 156/500 (31%), Gaps = 134/500 (26%)
Query: 191 HDKH-----SKHKHKKKD--KHGDKTNPKEKDAK----------SKEKESHKSSAGPKCY 233
H H +H+++ KD + D K SKE+ H +
Sbjct: 3 HHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD--- 59
Query: 234 PEVGGIYIL---LRSKKNKTVQ---------------ERLAEQFKD-ELFDRLKNEQADI 274
V G L L SK+ + VQ + + + + R+ EQ D
Sbjct: 60 -AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 275 LQRKVHIIS-GDIS--QPSLGISSHDQQFIQHHIHVIIH----------AAASLRFDELI 321
L + + ++S QP L + + ++ +V+I A +
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLE-LRPAKNVLIDGVLGSGKTWVALDVCL-SYKV 176
Query: 322 QDAFTLNI--------QATRELLD-LATRCSQLKAILHVSTLYTHSYR---EDIQEEFYP 369
Q I + +L+ L Q+ + ++ + + IQ E
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 370 PLFS--YED----LAHV----------------MQTTNQEELEILSSMLFGGIY--NNSY 405
L S YE+ L +V + T ++ + LS+ I ++S
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 406 SFTKAIGESVVEKYL----YKLPLAMVR--P---SIV-------VSTWKEPIVGWSNNLY 449
+ T +S++ KYL LP ++ P SI+ ++TW W +
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN----WKHVNC 352
Query: 450 GPGGAAAGAALGLIHTFYAKHD-KKCDLIPVDVA-TNMMLGVVWKTA--------LDHGH 499
++L ++ + + + P ++L ++W ++ H
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412
Query: 500 VAPPASLVAPIPRTDPPVYNLSISSSYPITWLEYMNSVQAAGKCDEQYIASVLAIWTYTF 559
SLV P +SI S Y ++ N + Y ++ +
Sbjct: 413 K---YSLVE----KQPKESTISIPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDD 463
Query: 560 CMEQNQFMYLLRVWFL--HM 577
+ Y + H+
Sbjct: 464 LIPPYLDQYFY--SHIGHHL 481
Score = 43.7 bits (102), Expect = 2e-04
Identities = 33/214 (15%), Positives = 63/214 (29%), Gaps = 41/214 (19%)
Query: 209 TNPKEKDAKSKEKESHKSSAGPKCYPE----VGGIYILLRSK--KNKTVQERLAEQFKDE 262
+ + D + HK S K E + IY+ L+ K + + + +
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN-- 454
Query: 263 LFDRLKNEQADILQRKVHIISGDISQPSLGISSHDQ---QFIQHHIHVIIHAAASLRFDE 319
+ + S D+ P L DQ I HH+ I H F
Sbjct: 455 ------------IPKTFD--SDDLIPPYL-----DQYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 320 LIQD-AFTLNIQATRELLDLATRC-SQLKAILHVSTLYTHSYREDIQEEFYPPLFSYEDL 377
+ D F ++ A + L Y Y D ++ + + D
Sbjct: 496 VFLDFRF---LEQKIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILDF 551
Query: 378 AHVMQTT--NQEELEILSSMLF---GGIYNNSYS 406
++ + ++L L I+ ++
Sbjct: 552 LPKIEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 5e-07
Identities = 89/549 (16%), Positives = 149/549 (27%), Gaps = 219/549 (39%)
Query: 140 SSKIVSSSHNSKE-----PAS----GSQL----ISHPPPPAPTPTQ----KSPVK----- 177
S++ ++ SH S E P + SQL P P +P +
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 178 ----TKEKEKEKESSTTH-----------------DKHSKHKHKKKDKHGDKTNPKEKD- 215
+ E K D H+ ++ D T K K+
Sbjct: 65 LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN--DTTLVKTKEL 122
Query: 216 ----------AKSKEKESHKS------SAGP-KCYPEVGG-------------IYILLRS 245
AK + S G + GG +Y
Sbjct: 123 IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLY----- 177
Query: 246 KKNKTVQERLAEQFKDELFDRLKNEQADILQRKVHIISG-DISQ----PSLGISSHDQQF 300
+T L + L L + G +I + PS ++ D+ +
Sbjct: 178 ---QTYHV-LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS---NTPDKDY 230
Query: 301 IQHHIHVIIHAAASLRFDELIQDAFTLNIQATRELLDLATRCSQLKAILHVSTLYTHSYR 360
+ + S +IQ A + T +LL +L++ L +T HS
Sbjct: 231 L-------LSIPISCPLIGVIQLA---HYVVTAKLLGFTP--GELRSYLKGAT--GHS-- 274
Query: 361 EDIQEEFYPPLFSYEDLAHVMQTTNQEE--LEILSSMLFGGIYNNSYSFTKAIGESVVEK 418
+ + A + T+ E + + + F IG E
Sbjct: 275 QGLV------------TAVAIAETDSWESFFVSVRKAI-------TVLF--FIGVRCYEA 313
Query: 419 YLYKLPLAMVRPSIVVSTWK----EP-----IVGWSN----------NLYGPGGAAAGAA 459
Y P + PSI+ + + P I + N + P G +
Sbjct: 314 Y----PNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 460 LGLIHTFYAKHDKKCDLIPVDVATNMMLGVVWKTALDHGHVAPPASLV----------AP 509
L V+ A N+ VV + G PP SL AP
Sbjct: 370 L------------------VNGAKNL---VV--S----G---PPQSLYGLNLTLRKAKAP 399
Query: 510 -------IPRTD--PPVYN--LSISSSY--PITWLEYMNSV-----QAAGKCDEQYIASV 551
IP ++ N L ++S + + + K + + A
Sbjct: 400 SGLDQSRIPFSERKLKFSNRFLPVASPFHSH-----LLVPASDLINKDLVKNNVSFNAKD 454
Query: 552 LAIWTY-TF 559
+ I Y TF
Sbjct: 455 IQIPVYDTF 463
Score = 47.4 bits (112), Expect = 1e-05
Identities = 48/295 (16%), Positives = 99/295 (33%), Gaps = 94/295 (31%)
Query: 252 QER-----LAEQFK--DELFDRLKNEQADILQRKVHIIS-GDISQ---PSLGI---SSHD 297
QE+ L + K ++++R AD + + S DI +L I
Sbjct: 1627 QEQGMGMDLYKTSKAAQDVWNR-----ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 298 QQFIQHHIHVIIHAAASLR------FDELIQDAFTLNIQATRELLDLATRCSQLKAILHV 351
++ +++ +I + F E+ + + + ++ + LL T+ +Q A+
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSA-TQFTQ-PALT-- 1737
Query: 352 STLYTHSY--REDIQEEFYPPLFSYEDLA-H-------------VMQTTNQEELEILSSM 395
ED++ + P + A H VM +E L +
Sbjct: 1738 ----LMEKAAFEDLKSKGLIPADAT--FAGHSLGEYAALASLADVM------SIESLVEV 1785
Query: 396 LF--GGIYNNSYSFTKAIGESVVEKYLYKLPLAM--VRPSIVVSTWKEPIV--------- 442
+F G + +V L + M + P V +++ + +
Sbjct: 1786 VFYRG----------MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGK 1835
Query: 443 --GWS----N-NLYGPGG--AAAG--AAL-GLIHTFYAKHDKKCDLIPVDVATNM 485
GW N N+ AAG AL + + +K D+I + + ++
Sbjct: 1836 RTGWLVEIVNYNV--ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 37.0 bits (85), Expect = 0.020
Identities = 37/229 (16%), Positives = 71/229 (31%), Gaps = 91/229 (39%)
Query: 282 ISGDISQPS--LGISSHDQQFIQHHIHVIIHAAASLRFDELIQ-------DAFTLNIQAT 332
+ + PS L IS+ Q+ +Q +++ + L + ++ + +
Sbjct: 328 LENNEGVPSPMLSISNLTQEQVQDYVN---KTNSHLPAGKQVEISLVNGAKNLVV----S 380
Query: 333 ---RELLDLATRCSQLKA--------ILH-------------VSTLYTHS-Y----REDI 363
+ L L + KA I V++ + HS + I
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF-HSHLLVPASDLI 439
Query: 364 QEEFYPP--LFSYEDLA-HVMQTTNQEELEILSSMLFGGIYNNSYSFTKAIGESVVEKYL 420
++ F+ +D+ V T + +L +LS I E +V+
Sbjct: 440 NKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGS---------------ISERIVD--- 481
Query: 421 YKLPLAMVRPSIVVSTWKEPIVGWSNNL---------YGPGGAAAGAAL 460
++R P V W +GPGGA+ L
Sbjct: 482 -----CIIR---------LP-VKWETTTQFKATHILDFGPGGASGLGVL 515
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Length = 437
Score = 51.0 bits (121), Expect = 6e-07
Identities = 19/170 (11%), Positives = 53/170 (31%), Gaps = 1/170 (0%)
Query: 6 KSSSSSSSAHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKK 65
K+KD+D S S + + D E +
Sbjct: 268 SRDKEERRRSRERSKDKDRDRKRRSSRSRERARRERERKEELRGGGGDMAEPSEA-GDAP 326
Query: 66 DKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRE 125
+ + + + ++++R+ + S E+ + +++ +++ HK ++ E
Sbjct: 327 PDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSE 386
Query: 126 RDKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHPPPPAPTPTQKSP 175
R +DE + + + + + + P + +P
Sbjct: 387 RGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGGDGYLAPENGYLMEAAP 436
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 48.2 bits (114), Expect = 1e-06
Identities = 14/84 (16%), Positives = 37/84 (44%), Gaps = 9/84 (10%)
Query: 54 KDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKK 113
+E E +K +E+ + + +E D K ++ ++ ++K+ ++ + +
Sbjct: 78 DRLTQEPESIRKWREEQRKRL----QELDA---ASKVMEQEWREK--AKKDLEEWNQRQS 128
Query: 114 EKSHKHKDKDRERDKDEKKEQKES 137
E+ K+K +R DK ++
Sbjct: 129 EQVEKNKINNRIADKAFYQQPDAD 152
Score = 40.5 bits (94), Expect = 5e-04
Identities = 6/43 (13%), Positives = 21/43 (48%)
Query: 94 SKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKE 136
++ + E E ++ ++++ K + D + + E +E+ +
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAK 117
Score = 40.5 bits (94), Expect = 5e-04
Identities = 10/66 (15%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 48 KKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK- 106
++ K+ ++ D K + + ++K+ +K+ ++ + ++ E+ E K K ++ +K
Sbjct: 93 EQRKRLQELD-AASKVMEQEWREKA-----KKDLEEWNQRQSEQVE-KNKINNRIADKAF 145
Query: 107 -KEKKD 111
++
Sbjct: 146 YQQPDA 151
Score = 40.1 bits (93), Expect = 7e-04
Identities = 10/73 (13%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
Query: 72 SAVSSKEKEKDKVSS-KEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDK-DRERDKD 129
+ +E + + +E++RK + + K +++ +EK+ K ++ ++ + +
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQELD---AASKVM-EQEWREKAKKDLEEWNQRQSEQ 130
Query: 130 EKKEQKESKSSSK 142
+K + ++ + K
Sbjct: 131 VEKNKINNRIADK 143
Score = 39.4 bits (91), Expect = 0.001
Identities = 9/54 (16%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 48 KKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEK-EKDKVSSKEKERKESKPKESS 100
+ D K +++ +EK K+ ++ E+ EK+K++++ ++ + ++
Sbjct: 100 ELDAASK-VMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 39.4 bits (91), Expect = 0.001
Identities = 10/62 (16%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 84 VSSKEKERKESKPKESSSEKEKKK-EKKDKKEKSHKHKDKDR-ERDKDE-KKEQKESKSS 140
++ ++ +E + E+++K+ ++ D K + + +++ ++D +E + Q E
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 141 SK 142
+K
Sbjct: 134 NK 135
Score = 31.7 bits (71), Expect = 0.39
Identities = 13/64 (20%), Positives = 20/64 (31%), Gaps = 8/64 (12%)
Query: 212 KEKDAKSKEKESHKSSAGPKCYPEVGGIYILLRSKKNKTVQERLAEQFKDELFDRLKNEQ 271
+E DA SK E K ++ + K D+ F +
Sbjct: 99 QELDAASKVMEQEWREKAKK---DLEEWNQRQSEQVEKNKINNRIA---DKAF--YQQPD 150
Query: 272 ADIL 275
ADI+
Sbjct: 151 ADII 154
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 47.9 bits (113), Expect = 9e-06
Identities = 19/179 (10%), Positives = 68/179 (37%), Gaps = 10/179 (5%)
Query: 3 YSVKSSSSSSS-AHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKE 61
+ + + + ++P ++ +T+ S+T+ + K +K + +++K+
Sbjct: 782 FQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKK 841
Query: 62 KEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPK--ESSSEKEKKKEKKDKKEKSHKH 119
+ ++ +++ ++ ++ K+ K + SKP ++ + ++ + K +
Sbjct: 842 EHEEKEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRF 901
Query: 120 KDKDRER-------DKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHPPPPAPTPT 171
+ + +D + ++ + + N+ P + P A P+
Sbjct: 902 VPVRKFKGNNGVVVLRDREPKEPVALIETVRQMKDVNAPLPTPFKVDDNVDFPSALQPS 960
Score = 34.4 bits (78), Expect = 0.11
Identities = 15/86 (17%), Positives = 33/86 (38%), Gaps = 3/86 (3%)
Query: 149 NSKEPASGSQLISHPPPPA---PTPTQKSPVKTKEKEKEKESSTTHDKHSKHKHKKKDKH 205
S + Q+ + A P +++ K EK STT ++ K KK+K
Sbjct: 774 GSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKG 833
Query: 206 GDKTNPKEKDAKSKEKESHKSSAGPK 231
++ K++ + +++ +
Sbjct: 834 PNEEEKKKEHEEKEKERETNKKGIKE 859
>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3-
hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A
{Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*
Length = 317
Score = 46.9 bits (112), Expect = 9e-06
Identities = 31/237 (13%), Positives = 69/237 (29%), Gaps = 62/237 (26%)
Query: 253 ERLAEQFKDE---LFDRLKNEQADILQRKVHIISGDISQPSLGISSHDQQFIQHHIHVII 309
LAE++ + D ++ + + I+ D+S D+ ++ I I
Sbjct: 17 PYLAEKYGKKNVIASDIVQRDTG-----GIKFITLDVSNRDEI----DRAVEKYSIDAIF 67
Query: 310 HAAA--SLRFDELIQDAFTLNIQATRELLDLATRCSQLKAILHVSTLYTHSYREDIQEEF 367
H A S + ++ A+ +N+ T +L+ A + +++ ++ ST+ F
Sbjct: 68 HLAGILSAKGEKDPALAYKVNMNGTYNILEAA-KQHRVEKVVIPSTI----------GVF 116
Query: 368 YPPLFSYEDLAHVMQTTNQEELEILSSMLFGGIYNNSYSFTKAIGESVVEKY--LYKLPL 425
P + I + TK E + + Y + L +
Sbjct: 117 GPET----------PKNKVPSITITRP-------RTMFGVTKIAAELLGQYYYEKFGLDV 159
Query: 426 AMVRPSIVVSTWKEPIVGWSNNLYGPGGAAAGAALGLIHTFY--AKHDKKCDLIPVD 480
+R + + A +K +
Sbjct: 160 RSLRYP---------------GIISYKAEPTAGTTDYAVEIFYYAVKREKYK-CYLA 200
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 47.4 bits (113), Expect = 1e-05
Identities = 15/93 (16%), Positives = 36/93 (38%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK 106
+K + + E + D + E+E +++ +E K + +
Sbjct: 945 KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQ 1004
Query: 107 KEKKDKKEKSHKHKDKDRERDKDEKKEQKESKS 139
EKK +E + K+K + + + K++ K+
Sbjct: 1005 TEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037
Score = 45.9 bits (109), Expect = 4e-05
Identities = 15/90 (16%), Positives = 38/90 (42%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK 106
K + + E EK + D E+ + + + ++V S ++E + + + ++ EKK
Sbjct: 949 EKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKK 1008
Query: 107 KEKKDKKEKSHKHKDKDRERDKDEKKEQKE 136
++ + H+ + E + + E
Sbjct: 1009 TIEEWADKYKHETEQLVSELKEQNTLLKTE 1038
Score = 43.6 bits (103), Expect = 2e-04
Identities = 19/98 (19%), Positives = 41/98 (41%), Gaps = 4/98 (4%)
Query: 48 KKDKKDKDRDKEKEKEKKDKEKDKSA----VSSKEKEKDKVSSKEKERKESKPKESSSEK 103
+K + D +R + E+E K+ + ++ KE + +++K +E K +
Sbjct: 963 EKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022
Query: 104 EKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSS 141
+ E K++ K++ R D+ KE E+
Sbjct: 1023 QLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKK 1060
Score = 40.1 bits (94), Expect = 0.002
Identities = 27/183 (14%), Positives = 66/183 (36%), Gaps = 23/183 (12%)
Query: 49 KDKKDKDRDKEKEKEKKDKEKDKSA-----VSSKEKEKDKVSSKEKERKESKPKESSSEK 103
K K + R E+ K+ ++K + + KE + K + + E+ +
Sbjct: 907 KKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR 966
Query: 104 E-------KKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASG 156
++E K+ + +++ + K+ + Q E K+ + + E
Sbjct: 967 SDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE---- 1022
Query: 157 SQLISHPPPPAPTPTQKSPVKTKEKEKEKESSTTHDKHSKHKHKKKDKHGDKTNPKEKDA 216
QL+S Q + +KT+++E + + ++ KK + + D
Sbjct: 1023 -QLVSE------LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDE 1075
Query: 217 KSK 219
+ +
Sbjct: 1076 RLR 1078
Score = 37.4 bits (87), Expect = 0.015
Identities = 18/84 (21%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK 106
+ + K ++ +K K + E+ + S+ KE++ + EKE + + + E +
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQ----LVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056
Query: 107 KEKKDKKEKSHKHKDKDRERDKDE 130
EKK +E D + ER + +
Sbjct: 1057 MEKKLVEETKQLELDLNDERLRYQ 1080
Score = 34.3 bits (79), Expect = 0.14
Identities = 27/219 (12%), Positives = 68/219 (31%), Gaps = 44/219 (20%)
Query: 56 RDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEK 115
R ++E K K K S E+ K E + + + K KE K +
Sbjct: 898 RRMMAKRELK---KLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNL 954
Query: 116 SHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHPPPPAPTPTQKSP 175
+ + + D ++ + + + + + +E + +
Sbjct: 955 EITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQE-------------------EIAK 995
Query: 176 VKTKEKEKEKESSTTHDKHSKHKHKKKDKHGDKTNPKEKDAKSKEKESHKSSAGPKCYPE 235
++ + + + E T + K+KH+ + + ++ EKE
Sbjct: 996 LRKELHQTQTEKKTIEEWADKYKHETEQLVSELK--EQNTLLKTEKEELN---------- 1043
Query: 236 VGGIYILLRSKKNKTVQERLAEQFKDELFDRLKNEQADI 274
++ + + E + +L + K + D+
Sbjct: 1044 ----------RRIHDQAKEITETMEKKLVEETKQLELDL 1072
Score = 30.1 bits (68), Expect = 3.0
Identities = 20/237 (8%), Positives = 65/237 (27%), Gaps = 35/237 (14%)
Query: 52 KDKDRDKEKEKEKKDKEKDKSAV---SSKEKEKDKVSSKEKERKESKPKESSSEKEKKKE 108
+ R + + ++ ++ +V + + K+E
Sbjct: 846 QALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE 905
Query: 109 KKDKK--EKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHPPPP 166
K K +S + K +++ + + + L
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQN----KEYKSLLEKMNNLEI----- 956
Query: 167 APTPTQKSPVKTKEKEKEKESSTTHDKHSKHKHKKKDKHGDKTNPKEKDAKSKEKESHKS 226
S K + + + ++ ++ + +++ +++ ++
Sbjct: 957 -----TYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIE 1011
Query: 227 SAGPKCYPEVGGIYILLRSKKNKTVQE-----RLAEQFKDELFDRLKNEQADILQRK 278
K + + + V E L + K+EL R+ ++ +I +
Sbjct: 1012 EWADK-----------YKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETM 1057
>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A
{Pseudomonas aeruginosa}
Length = 342
Score = 46.5 bits (111), Expect = 1e-05
Identities = 24/232 (10%), Positives = 57/232 (24%), Gaps = 66/232 (28%)
Query: 278 KVHIISGDISQPSLGISSHDQQFIQHH---IHVIIHAAASLRFD-ELIQDAFTLNIQATR 333
+ ++ D ++ + +I +A Q+ + T
Sbjct: 57 EPECRVAEML---------DHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTN 107
Query: 334 ELLDLATRCSQLKAILHVSTLYTHSYREDIQEEFYPPLFSYEDLAHVMQTTNQEELEILS 393
+ ++ IL+V + Y +E L + +
Sbjct: 108 PFYAACLQA-RVPRILYVGSAYAMPRHPQGLP-------GHEGLFYDSLPSG-------- 151
Query: 394 SMLFGGIYNNSYSFTKAIGESVVEKYLYK-LPLAMVRPSIVVSTWKEPIVGWSNNLYGPG 452
+SY K + + LP+ + P +V G
Sbjct: 152 --------KSSYVLCKWALDEQAREQARNGLPVVIGIPGMV---------------LGEL 188
Query: 453 GAAAGAALGLIHTFYAKH-----DKKCDLIPV-DVATNMMLGVVWKTALDHG 498
+I + ++I + +++ AL+ G
Sbjct: 189 DIGPTTG-RVITAIGNGEMTHYVAGQRNVIDAAEAGRGLLM------ALERG 233
>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium
tumefa structural genomics, PSI-2, protein structure
initiative; 1.85A {Agrobacterium tumefaciens}
Length = 342
Score = 46.2 bits (110), Expect = 2e-05
Identities = 42/262 (16%), Positives = 77/262 (29%), Gaps = 73/262 (27%)
Query: 263 LFDRLKNEQADILQRKVHIISGDISQPSLGISSHDQQFIQHHIHVIIHAAASL------R 316
L D + E V + D+S P ++ ++ VI H AA +
Sbjct: 50 LIDVFQPEAPAGFSGAVDARAADLSAPGE-----AEKLVEARPDVIFHLAAIVSGEAELD 104
Query: 317 FDELIQDAFTLNIQATRELLDLA----TRCSQLKAILHVSTL--YTHSYREDIQEEFYP- 369
FD+ + +N+ TR L D + ++ S++ + I +EF+
Sbjct: 105 FDK----GYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTT 160
Query: 370 PLFSYEDLAHVMQTTNQEELEILSSMLFGGIYNNSYSFTKAIGESVVEKY--LYKLPLAM 427
PL SY KAI E ++ Y
Sbjct: 161 PL-------------------------------TSYGTQKAICELLLSDYSRRGFFDGIG 189
Query: 428 VRPSIVVSTWKEPIVGWSNNLYGPGGAAAGAALGLIHTFYAKHDKKCDLIPVDVATNMML 487
+R + + P AA+G ++ + PV +
Sbjct: 190 IRLPTICIRPGK-----------PNAAASGFFSNILREPLVGQEAVL---PVPESIRHWH 235
Query: 488 GVVWKTALD---HGHVAPPASL 506
++A+ HG + +
Sbjct: 236 ASP-RSAVGFLIHGAMIDVEKV 256
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 45.2 bits (107), Expect = 6e-05
Identities = 24/156 (15%), Positives = 59/156 (37%), Gaps = 10/156 (6%)
Query: 48 KKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKK 107
K++K + +E++K+ +K K K + E E + K ++S E EK K
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIK 1062
Query: 108 EKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHPPPPA 167
K + + + + + E K Q K + + E + + +
Sbjct: 1063 RKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALK------ 1116
Query: 168 PTPTQKSPVKTKEKEKEKESSTTHDKHSKHKHKKKD 203
+ +++ + +++ + +K + +K+D
Sbjct: 1117 ----KIRELESHISDLQEDLESEKAARNKAEKQKRD 1148
Score = 41.0 bits (96), Expect = 0.001
Identities = 37/246 (15%), Positives = 81/246 (32%), Gaps = 42/246 (17%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK 106
+KK + ++ + + + ++++E+ + + K+K + ++ E++ +E + + EK
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 107 K--EKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHPP 164
K K E + + E+K +E S + K
Sbjct: 980 TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEK------------- 1026
Query: 165 PPAPTPTQKSPVKTKEKEKEKESSTTHDKHSKHKHKKKDKHGDKTNPKEKDAKSKEKESH 224
K K K K S + + K ++K + E + ++ E
Sbjct: 1027 -----------AKNLTKLKNKHESMISELEVRLKKEEKSRQ-------ELEKIKRKLEGE 1068
Query: 225 KSSAGPKCYPEVGGIYILLRSKKNKTVQERLAEQFKDELFDRLKNEQADI--LQRKVHII 282
S + I L Q E+ RL++E + +K+ +
Sbjct: 1069 SSDLHEQ-------IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121
Query: 283 SGDISQ 288
IS
Sbjct: 1122 ESHISD 1127
Score = 37.5 bits (87), Expect = 0.015
Identities = 17/98 (17%), Positives = 41/98 (41%), Gaps = 3/98 (3%)
Query: 45 SSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKE 104
S + + K ++ ++ E++++A + EK K K+ ++ +
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001
Query: 105 KKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSK 142
KE+K +E + D ++E+K + +K +K
Sbjct: 1002 LTKERKLLEE---RVSDLTTNLAEEEEKAKNLTKLKNK 1036
Score = 35.2 bits (81), Expect = 0.076
Identities = 13/98 (13%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
Query: 45 SSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKE 104
+++ ++++K ++ K K K + +KE+ EK +++ + + S ++
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMIS-ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQ 1075
Query: 105 KKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSK 142
+ + E + K+ E + + E+ +
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNN 1113
Score = 33.3 bits (76), Expect = 0.25
Identities = 13/90 (14%), Positives = 34/90 (37%), Gaps = 3/90 (3%)
Query: 43 NSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSK-EKEKDKVSSKEKERKESKPKESSS 101
++ + + + + K+ ++ E S + E EK + EK++++ E
Sbjct: 1097 LQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDL--SEELE 1154
Query: 102 EKEKKKEKKDKKEKSHKHKDKDRERDKDEK 131
+ + E + + +D D+K
Sbjct: 1155 ALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 44.3 bits (105), Expect = 1e-04
Identities = 8/72 (11%), Positives = 21/72 (29%)
Query: 48 KKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKK 107
+ + + + K+ + + K E+ +E E+ +
Sbjct: 939 EGQSNSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLLAELERLQ 998
Query: 108 EKKDKKEKSHKH 119
+ +D H H
Sbjct: 999 KIEDLHHHHHHH 1010
>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase;
2.25A {Homo sapiens} PDB: 2ydx_A
Length = 315
Score = 42.2 bits (100), Expect = 2e-04
Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 23/116 (19%)
Query: 262 ELFDRLKNEQADILQRKVHIISGDISQPSLGISSHDQ--QFIQHH-IHVIIHAAASLRFD 318
+ + + Q + + + I HVI+H AA R D
Sbjct: 17 AVHKEFQQNNWHAVGCGFRRARPKFEQ--VNLLDSNAVHHIIHDFQPHVIVHCAAERRPD 74
Query: 319 ------ELIQDAFTLNIQATRELLDLATRCSQLKAIL-HVSTLY----THS-YRED 362
+ A LN+ A+ LA + + A L ++S+ Y T+ YRE+
Sbjct: 75 VVENQPDA---ASQLNVDASGN---LAKEAAAVGAFLIYISSDYVFDGTNPPYREE 124
>1rxt_A Myristoyl-, glycylpeptide N-tetradecanoyltransferase 1; alpha-beta
structure, unique N-myristoyltransferase fold; 3.00A
{Homo sapiens} SCOP: d.108.1.2 d.108.1.2
Length = 496
Score = 42.4 bits (99), Expect = 3e-04
Identities = 13/118 (11%), Positives = 46/118 (38%)
Query: 1 MAYSVKSSSSSSSAHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEK 60
MA +++ + + + S + ++ S + + K+K
Sbjct: 1 MADESETAVKPPAPPLPQMMEGNGNGHEHCSDCENEEDNSYNRGGLSPANDTGAKKKKKK 60
Query: 61 EKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHK 118
+K+KK+K + + + + + + ++ + + + S + K ++ ++S++
Sbjct: 61 QKKKKEKGSETDSAQDQPVKMNSLPAERIQEIQKAIELFSVGQGPAKTMEEASKRSYQ 118
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 39.5 bits (91), Expect = 0.001
Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 11/131 (8%)
Query: 7 SSSSSSSAHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKD 66
+ S A P P +D A + + P + ++ +E E +K
Sbjct: 48 AGSQGGLAQPGPASGASEDMGATVNGDVFQEANGPADGYAAIAQ--ADRLTQEPESIRKW 105
Query: 67 KEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRER 126
+E+ + + +E D S ++ K ++K+ ++ + + E+ K+K +R
Sbjct: 106 REEQRKRL----QELDAASKVMEQEWREK-----AKKDLEEWNQRQSEQVEKNKINNRIA 156
Query: 127 DKDEKKEQKES 137
DK ++
Sbjct: 157 DKAFYQQPDAD 167
>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain
dehydrogenase/reductase, rossmann fold, BIO protein;
HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2
PDB: 1i2c_A* 1i2b_A* 1qrr_A*
Length = 404
Score = 40.1 bits (94), Expect = 0.002
Identities = 13/153 (8%), Positives = 38/153 (24%), Gaps = 23/153 (15%)
Query: 297 DQQFIQHHIHVIIHAAASLRFDELIQDA------FTLNIQATRELLDLATRCSQLKAILH 350
+ F ++H + D N+ T +L + ++
Sbjct: 93 AESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVK 152
Query: 351 VSTLYTHSYREDIQEEFYPPLFSYEDLAHVMQTTNQEELEILSSMLFGGIYNNSYSFTKA 410
+ T+ + EE Y + ++ + ++ Y +K
Sbjct: 153 LGTMGEYGTPNIDIEEGYITI---------------THNGRTDTLPYPKQASSFYHLSKV 197
Query: 411 IGESVVEKY--LYKLPLAMVRPSIVVSTWKEPI 441
+ + + + +V +
Sbjct: 198 HDSHNIAFTCKAWGIRATDLNQGVVYGVKTDET 230
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 37.7 bits (88), Expect = 0.008
Identities = 35/201 (17%), Positives = 55/201 (27%), Gaps = 55/201 (27%)
Query: 278 KVHIISGDISQPSLGISSHDQQFIQHHIHVIIHAAASLRFDELIQDAFT---LNIQATRE 334
V I+ +L +Q + H A I D N T +
Sbjct: 79 AVRFSETSITDDAL------LASLQDEYDYVFHLATYHGNQSSIHDPLADHENNTLTTLK 132
Query: 335 LLDLATRCSQLKAILHVST--LYTHSYREDIQEEFYPPLFSYEDLAHVMQTTNQEELEIL 392
L + +LK +++ + +D + + S
Sbjct: 133 LYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSL------------------ 174
Query: 393 SSMLFGGIYNNS-YSFTKAIGESVVEKY--LYKLPLAMVRPSIVVSTWKEPIVGWSNNLY 449
N+S YS +K GE Y ++LP R N+Y
Sbjct: 175 -------HNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQ---------------NVY 212
Query: 450 GPG-GAAAGAALGLIHTFYAK 469
GPG AG G T +
Sbjct: 213 GPGEILGAGRWRGTPATVWRN 233
>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold,
sugar-nucleotide-binding domain; HET: NAD; 2.00A
{Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A*
1kc3_A* 1kbz_A*
Length = 299
Score = 37.6 bits (88), Expect = 0.009
Identities = 23/112 (20%), Positives = 40/112 (35%), Gaps = 24/112 (21%)
Query: 269 NEQADILQRKVHIISGDISQPSLG--ISSHDQ--QFI-QHHIHVIIHAAASLRFD----- 318
E L ++I+ D+ S+ + + + VI++AAA D
Sbjct: 14 WELQRSLAPVGNLIALDVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESE 73
Query: 319 -ELIQDAFTLNIQATRELLDLATRCSQLKAIL-HVSTLY------THSYRED 362
EL A LN + +A ++ A + H ST Y ++E
Sbjct: 74 PEL---AQLLNATSVEA---IAKAANETGAWVVHYSTDYVFPGTGDIPWQET 119
>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint
center for structural genomics, JCSG, protein structu
initiative; HET: NAI UNL; 2.05A {Clostridium
acetobutylicum} SCOP: c.2.1.2
Length = 292
Score = 37.1 bits (87), Expect = 0.011
Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 23/91 (25%)
Query: 285 DISQPSLGISSHDQQFIQHHIHVIIHAAASLRFD------ELIQDAFTLNIQATRELLDL 338
DI+ + ++ F + +V+I+ AA D +L A+ +N + L
Sbjct: 48 DITNVL----AVNKFFNEKKPNVVINCAAHTAVDKCEEQYDL---AYKINAIGPKN---L 97
Query: 339 ATRCSQLKAIL-HVSTLY------THSYRED 362
A + A + +ST Y E
Sbjct: 98 AAAAYSVGAEIVQISTDYVFDGEAKEPITEF 128
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 37.5 bits (86), Expect = 0.011
Identities = 14/77 (18%), Positives = 24/77 (31%)
Query: 43 NSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSE 102
KD+ + +++ ++ +E + KE S K K S
Sbjct: 298 AGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLV 357
Query: 103 KEKKKEKKDKKEKSHKH 119
EK E + H H
Sbjct: 358 AEKIPENETTHHHHHHH 374
Score = 35.2 bits (80), Expect = 0.052
Identities = 13/76 (17%), Positives = 26/76 (34%)
Query: 61 EKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHK 120
EKE A + K++D+ + +E + + + KK K E +
Sbjct: 293 EKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVG 352
Query: 121 DKDRERDKDEKKEQKE 136
+ +K + E
Sbjct: 353 TEQLVAEKIPENETTH 368
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics,
infectious diseases, bacillus anthracis STR. AMES,
rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus
anthracis}
Length = 287
Score = 37.1 bits (87), Expect = 0.012
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 285 DISQPSLGISSHDQQFIQHHIHVIIHAAASLRFD--ELIQD-AFTLNIQATRELLDLATR 341
DI+ S Q + H+IIH AA + D E +D A+ +N R +A
Sbjct: 41 DITNIS----QVQQVVQEIRPHIIIHCAAYTKVDQAEKERDLAYVINAIGARN---VAVA 93
Query: 342 CSQLKAIL-HVSTLY------THSYRED 362
+ A L ++ST Y Y E
Sbjct: 94 SQLVGAKLVYISTDYVFQGDRPEGYDEF 121
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 36.4 bits (83), Expect = 0.022
Identities = 17/87 (19%), Positives = 35/87 (40%)
Query: 51 KKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKK 110
K + ++ + DK+A + + K ++K +K R++ K +K KK
Sbjct: 333 KTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Query: 111 DKKEKSHKHKDKDRERDKDEKKEQKES 137
K + K + +K E+K+
Sbjct: 393 KKAAATKKPAADKKPAEKKPTTEEKKP 419
Score = 32.5 bits (73), Expect = 0.41
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 1/77 (1%)
Query: 48 KKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKK 107
++ K K R + + K ++K K + K + ++ + KP KK
Sbjct: 342 RQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPK-KPVVGKKAAATKK 400
Query: 108 EKKDKKEKSHKHKDKDR 124
DKK K +++
Sbjct: 401 PAADKKPAEKKPTTEEK 417
Score = 29.5 bits (65), Expect = 3.2
Identities = 15/67 (22%), Positives = 24/67 (35%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK 106
K + + +EK K + K + K+ K +K KP EKK
Sbjct: 352 DKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Query: 107 KEKKDKK 113
++KK
Sbjct: 412 PTTEEKK 418
>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha,
beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus
tokodaii}
Length = 273
Score = 36.0 bits (84), Expect = 0.022
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 20/107 (18%)
Query: 273 DILQRKVHIISGDISQPSLGISSHD--------QQFIQHHIHVIIHAAASLRFD--ELIQ 322
+L + +I S G D I+ VII+AAA D E+ +
Sbjct: 18 RLLSERHEVIKVYNSSEIQGGYKLDLTDFPRLEDFIIKKRPDVIINAAAMTDVDKCEIEK 77
Query: 323 D-AFTLNIQATRELLDLATRCSQLKAIL-HVSTLY-----THSYRED 362
+ A+ +N +A R + + + + H+ST Y +Y+E+
Sbjct: 78 EKAYKINAEAVRH---IVRAGKVIDSYIVHISTDYVFDGEKGNYKEE 121
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 36.4 bits (84), Expect = 0.025
Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 1/111 (0%)
Query: 102 EKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEP-ASGSQLI 160
E+ + +++ +E ++K K S+ +EP +
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Query: 161 SHPPPPAPTPTQKSPVKTKEKEKEKESSTTHDKHSKHKHKKKDKHGDKTNP 211
+ + ++ E K K KKK +T+P
Sbjct: 65 DEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDP 115
Score = 31.0 bits (70), Expect = 1.3
Identities = 24/121 (19%), Positives = 41/121 (33%), Gaps = 15/121 (12%)
Query: 111 DKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHPPPPAPTP 170
++ S H + D + D E+ ++ ++K + S P
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSA--------AGEQEP 56
Query: 171 TQKSPVKTKEKEKEKESSTTHDKHSKHKHKKKDKHGDKTNPKEKDAKSKEKESHKSSAGP 230
++S E ++ E S DK + D GD A K+K+ K GP
Sbjct: 57 DKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDG-------ATGKKKKKKKKKRGP 109
Query: 231 K 231
K
Sbjct: 110 K 110
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 36.5 bits (85), Expect = 0.027
Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 50 DKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEK 109
K +D + E ++K E V ++ + + S K+ +E+ K + +K +
Sbjct: 513 QKMVRDAEANAEADRKFDEL----VQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA 568
Query: 110 KDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKI 143
E + K +DK K ++ Q K
Sbjct: 569 LTALETALKGEDKAAIEAKMQELAQVSQKLMEIA 602
>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase,
structural genomics, PSI-2, protein structure
initiative; HET: UDP; 2.95A {Bacillus cereus}
Length = 311
Score = 35.6 bits (83), Expect = 0.032
Identities = 27/196 (13%), Positives = 48/196 (24%), Gaps = 70/196 (35%)
Query: 279 VHIISGDISQPSLGISSHDQQFIQHHIHVIIHAAASLRFDELIQDAFTLNIQATRELLDL 338
D + D + + ++H AA+ I + N T+ L D
Sbjct: 44 YEYRVSDYTLE-------DLINQLNDVDAVVHLAATRGSQGKISEFHD-NEILTQNLYDA 95
Query: 339 ATRCSQLKAILHVST--LY----THSYREDIQEEFYPPLFSYEDLAHVMQTTNQEELEIL 392
+ + I++ ST Y + + E P
Sbjct: 96 C-YENNISNIVYASTISAYSDETSLPWNEKELPL---PD--------------------- 130
Query: 393 SSMLFGGIYNNSYSFTKAIGESVVEKY--LYKLPLAMVRPSIVVSTWKEPIVGWSNNLYG 450
Y +K E + Y L + +R + +LYG
Sbjct: 131 ----------LMYGVSKLACEHIGNIYSRKKGLCIKNLRFA---------------HLYG 165
Query: 451 PGGAAAGAALGLIHTF 466
I+ F
Sbjct: 166 FNEKNNYM----INRF 177
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 35.4 bits (82), Expect = 0.041
Identities = 30/229 (13%), Positives = 55/229 (24%), Gaps = 74/229 (32%)
Query: 253 ERLAEQFKDELFDRLKNEQADILQRKVHIISGDISQPSL---GISSHDQQFIQHHIHVII 309
ERLA + L D + D++ + ++ D I+
Sbjct: 21 ERLAPMAEILRLADLSP--LDPAGPNEECVQCDLADANAVNAMVAGCD---------GIV 69
Query: 310 H-AAASLRFDELIQDAFTLNIQATRELLDLATRCSQLKAILHVSTLYTHSY----REDIQ 364
H S+ + NI L + A R I+ S+ H+ + +
Sbjct: 70 HLGGISVEKP--FEQILQGNIIGLYNLYE-AARAHGQPRIVFASS--NHTIGYYPQTERL 124
Query: 365 EEFYP--PLFSYEDLAHVMQTTNQEELEILSSMLFGGIYNNSYSFTKAIGESVVEKY--L 420
P P + Y +K GE++ Y
Sbjct: 125 GPDVPARP-------------------------------DGLYGVSKCFGENLARMYFDK 153
Query: 421 YKLPLAMVRPSIVVSTWKEPIVGWSNNLYGPGGAAAGAALGLIHTFYAK 469
+ A+VR + + H +
Sbjct: 154 FGQETALVRIG---------------SCTPEPNNYRMLSTWFSHDDFVS 187
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 35.7 bits (81), Expect = 0.054
Identities = 29/229 (12%), Positives = 67/229 (29%), Gaps = 20/229 (8%)
Query: 77 KEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKE 136
++ + + +E+ E+S + + + + K + E ++ K E+ E
Sbjct: 7 HHGHHHQLENLYFQGEETAVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAE 66
Query: 137 SKSSSKIVSSSHNSKEPASGSQLISHPPPPAPTPTQKSPVKTKEKEKEKESSTTHDKHSK 196
+++ S PA + + E +
Sbjct: 67 GVATA-------------------SETASPASNEAATTETAEAASAAKPEEKASEVVAET 107
Query: 197 HKHKKKDKHGDKTNPKEKDAKSKEKESHKSSAGPKCYPEVGGIYILLRSKKNKTVQERLA 256
+ K K DK + +A ++ ES ++ K EV K K + +
Sbjct: 108 PSAEAKPK-SDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFN 166
Query: 257 EQFKDELFDRLKNEQADILQRKVHIISGDISQPSLGISSHDQQFIQHHI 305
+ ++ E I + V + S +S + +
Sbjct: 167 SWEELLKWEPGAREDDAINRGSVVLASRRTGHLVNEKASKEAKVQALSN 215
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 35.1 bits (80), Expect = 0.056
Identities = 0/175 (0%), Positives = 0/175 (0%), Gaps = 15/175 (8%)
Query: 42 TNSSSSKKDKKDKDRDKEKEKEKKDK-------EKDKSAVSSKEKEKDKVSSKEKERKES 94
NSS K + + K + +++ K + K++ + +++ +
Sbjct: 28 ENSSPELKAELRPLQFKSIREIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQD 87
Query: 95 KP------KESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSH 148
+ + + + + K+ +S + +D + + + +
Sbjct: 88 RHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGN 147
Query: 149 NSKEPASGSQLISHPPPPAPTPTQKSPVKTKEKEKEKES--STTHDKHSKHKHKK 201
++ S+ + + T ++ +
Sbjct: 148 KIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIPSE 202
Score = 30.1 bits (67), Expect = 1.8
Identities = 4/104 (3%), Positives = 19/104 (18%), Gaps = 4/104 (3%)
Query: 10 SSSSAHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEK---EKKD 66
A ++ + +D+ + + +
Sbjct: 48 EIDVAGGKKALAIFVPVPSLAGFHKVQTKLTRE-LEKKFQDRHVIFLAERRILPKPSRTS 106
Query: 67 KEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKK 110
++ K S ++ + + +
Sbjct: 107 RQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQ 150
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 34.4 bits (78), Expect = 0.091
Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 5/124 (4%)
Query: 11 SSSAHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDR--DKEKEKEKKDKE 68
++ + NK+K + + K + + + K KEK +K K+
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKD 355
Query: 69 KDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDK 128
+ E+ K + E + KE + K E EK + ++ ++ + E++K
Sbjct: 356 SEAELQRRHEQMKKNL---EAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNK 412
Query: 129 DEKK 132
+ K
Sbjct: 413 KKGK 416
Score = 30.2 bits (67), Expect = 2.4
Identities = 18/118 (15%), Positives = 51/118 (43%), Gaps = 5/118 (4%)
Query: 36 SSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESK 95
++ + ++ K + K + E+E+++ + E E ++V + + K K
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAK---MKKMEMEMEQVFEMKVKEKVQK 352
Query: 96 PKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEP 153
K+S E E ++ + K+ + E+ + + E+ ++ +I+ ++S+
Sbjct: 353 LKDS--EAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTL 408
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 34.0 bits (77), Expect = 0.11
Identities = 10/93 (10%), Positives = 40/93 (43%)
Query: 46 SSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEK 105
++K+ + +K R + KE+ K++++ AV + + + + + ++ + +
Sbjct: 104 AAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQ 163
Query: 106 KKEKKDKKEKSHKHKDKDRERDKDEKKEQKESK 138
K+++ + ++ + E + ++
Sbjct: 164 ASPGPSKQQERRRRSREEAQAKAQEAEALYQAC 196
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 33.8 bits (78), Expect = 0.11
Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Query: 50 DKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEK 109
K +D + E ++K +E V ++ + + S K+ +E+ K + +K +
Sbjct: 125 QKMVRDAEANAEADRKFEEL----VQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA 180
Query: 110 KDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKI 143
E + K +DK K ++ Q K
Sbjct: 181 LTALETALKGEDKAAIEAKMQELAQVSQKLMEIA 214
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 33.7 bits (78), Expect = 0.12
Identities = 10/61 (16%), Positives = 24/61 (39%), Gaps = 11/61 (18%)
Query: 57 DKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKS 116
K + ++ E+++ + +EKE + + E+EKK + K ++
Sbjct: 214 WSSKTETVEE-----------PMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTV 262
Query: 117 H 117
Sbjct: 263 W 263
Score = 29.9 bits (68), Expect = 2.0
Identities = 8/44 (18%), Positives = 23/44 (52%)
Query: 76 SKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKH 119
++ E+ + + ++ + ++ +E+++EKK K +K K
Sbjct: 218 TETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 29.1 bits (66), Expect = 3.4
Identities = 6/46 (13%), Positives = 23/46 (50%)
Query: 92 KESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKES 137
+++ E E+E+ +++ + +++ E K + K+ +++
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 27.9 bits (63), Expect = 9.6
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 77 KEKEKDKVSSKEKERKESKPKESSSEK---EKKKEKKDKKEKSHKHKDKDRER 126
K + E+E + KE S ++ E+++E+K K K + D E
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWEL 267
Score = 27.9 bits (63), Expect = 9.8
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 76 SKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHK 120
SK + ++ +E+ KE K +++E++ K + K
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 33.9 bits (77), Expect = 0.12
Identities = 17/84 (20%), Positives = 33/84 (39%)
Query: 55 DRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKE 114
DR KEK +K E +S K++ D++ K+KE + P + + +
Sbjct: 15 DRYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNK 74
Query: 115 KSHKHKDKDRERDKDEKKEQKESK 138
+ K ++ +K K+
Sbjct: 75 EHKTTKMSNKSNEKSGNVLPKDKP 98
Score = 32.0 bits (72), Expect = 0.54
Identities = 16/101 (15%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 78 EKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKES 137
++ K+K+ K K +E K++ ++ ++K+K + ++ +E
Sbjct: 15 DRYKEKLLQKAKAEGVESIEE---LKKRLADQIEEKKK-----------ELNKIDPLREL 60
Query: 138 KSSSKIVSSSHNSKEPASGSQLISHPPPPAPTPTQKSPVKT 178
+ S H +KE + + P KT
Sbjct: 61 EQHLNAGSRIHTNKEHKTTKMSNKSNEKSGNVLPKDKPYKT 101
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase,
microtubule, RB3, stath tubulin, cell cycle; HET: GTP
GDP; 4.17A {Artificial gene}
Length = 240
Score = 33.4 bits (75), Expect = 0.15
Identities = 13/90 (14%), Positives = 40/90 (44%)
Query: 49 KDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKE 108
++ ++K+K E+ + + + + K+K++ K + KE++ + + + E
Sbjct: 114 AAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENRKYQEAELLKHLAE 173
Query: 109 KKDKKEKSHKHKDKDRERDKDEKKEQKESK 138
K++ + + + ++ KE+ K
Sbjct: 174 KREHEREVIQRAIEENNNWIKMAKEKLAQK 203
Score = 33.4 bits (75), Expect = 0.16
Identities = 30/216 (13%), Positives = 74/216 (34%)
Query: 7 SSSSSSSAHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKD 66
S + S + +D I ++ + K +K + + ++
Sbjct: 25 SFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRAI 84
Query: 67 KEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRER 126
+E + +KEK K+ S ++ R+ +EK K ++ ++++ + + +
Sbjct: 85 EENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIKM 144
Query: 127 DKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHPPPPAPTPTQKSPVKTKEKEKEKE 186
K++ ++ ES ++ + K A + A KEK +K
Sbjct: 145 AKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQKM 204
Query: 187 SSTTHDKHSKHKHKKKDKHGDKTNPKEKDAKSKEKE 222
S ++ + + + +E + KE
Sbjct: 205 ESNKENREAHFAAMLERLQEKDKHAEEVRKNKELKE 240
Score = 31.9 bits (71), Expect = 0.42
Identities = 14/109 (12%), Positives = 43/109 (39%)
Query: 30 PSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEK 89
P + N + ++ + E +E++ ++ + EK + + ++
Sbjct: 23 PPSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQR 82
Query: 90 ERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESK 138
+E+ ++++ ++ + KE H ER +++ K +E +
Sbjct: 83 AIEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVR 131
Score = 30.7 bits (68), Expect = 1.2
Identities = 28/213 (13%), Positives = 73/213 (34%), Gaps = 3/213 (1%)
Query: 16 PSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVS 75
PS + ++S S ++ ++ K + + EK++ E++ +
Sbjct: 24 PSFDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQRA 83
Query: 76 SKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQK 135
+E +KEK ++ + + + E + +EK ++ + ++ K
Sbjct: 84 IEENNNWIKMAKEKLAQKMESNKENREAHFAAMLERLQEKDKHAEEVRQRAIEENNNWIK 143
Query: 136 ESKSSSKIVSSSHNSKEPASGSQLISHPPPPAPT---PTQKSPVKTKEKEKEKESSTTHD 192
+K S+ ++L+ H Q++ + K +
Sbjct: 144 MAKEKLAQKMESNKENRKYQEAELLKHLAEKREHEREVIQRAIEENNNWIKMAKEKLAQK 203
Query: 193 KHSKHKHKKKDKHGDKTNPKEKDAKSKEKESHK 225
S ++++ +EKD ++E +K
Sbjct: 204 MESNKENREAHFAAMLERLQEKDKHAEEVRKNK 236
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 33.3 bits (75), Expect = 0.20
Identities = 19/109 (17%), Positives = 31/109 (28%), Gaps = 1/109 (0%)
Query: 5 VKSSSSSSSAHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEK 64
V + SS+ ++DK+ + S P S
Sbjct: 206 VGARVQSSAYFSGGQVSRDKEEDYVRYAHGLISDYIPKELSDDLSKFLKLPEPPASLPNP 265
Query: 65 KDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKK 113
K+ S E ++D K+ K K + +K K DK
Sbjct: 266 PSKKLKLSD-EPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKS 313
>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, sugar binding protein; HET: NAD;
2.19A {Bordetella bronchiseptica}
Length = 333
Score = 33.4 bits (77), Expect = 0.21
Identities = 11/76 (14%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 278 KVHIISGDISQPSLGISSHDQQFIQHHIHVIIHAAASLRFDELIQDAFTLNIQATRELLD 337
+ + G I+ +L +Q ++H AAS + + + N ++
Sbjct: 67 NLTFVEGSIADHAL----VNQLIGDLQPDAVVHTAASYKDPDDWYNDTLTNCVGGSNVVQ 122
Query: 338 LATRCSQLKAILHVST 353
A + + + ++ T
Sbjct: 123 AA-KKNNVGRFVYFQT 137
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 32.9 bits (75), Expect = 0.28
Identities = 17/82 (20%), Positives = 35/82 (42%)
Query: 57 DKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKS 116
D+ ++ +K E K E+ + +++ KE+ K + S+ EKEK+K K +
Sbjct: 159 DEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLD 218
Query: 117 HKHKDKDRERDKDEKKEQKESK 138
+ R + +E+
Sbjct: 219 KVRRIFGRNGFQAYLREKYVPL 240
Score = 29.8 bits (67), Expect = 2.4
Identities = 11/83 (13%), Positives = 28/83 (33%)
Query: 49 KDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKE 108
K + + + EKEKEK K + + ++ + +E+ ++ +E + +
Sbjct: 194 KARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFD 253
Query: 109 KKDKKEKSHKHKDKDRERDKDEK 131
+ K +
Sbjct: 254 LPYSFVELTKDFEVRVHAPNGVL 276
Score = 29.0 bits (65), Expect = 4.2
Identities = 16/93 (17%), Positives = 33/93 (35%)
Query: 44 SSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEK 103
S K + K ++ ++ K + K E+ + KE + S
Sbjct: 144 KPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNL 203
Query: 104 EKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKE 136
EK+KEK K + + R+ + +++
Sbjct: 204 EKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREK 236
Score = 29.0 bits (65), Expect = 4.2
Identities = 10/101 (9%), Positives = 32/101 (31%), Gaps = 6/101 (5%)
Query: 49 KDKKDKDRDKEKEKE------KKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSE 102
+ + + + E ++ + +S+ EKEK+K++ + + + +
Sbjct: 169 GEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNG 228
Query: 103 KEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKI 143
+ +K + E D + ++
Sbjct: 229 FQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRV 269
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 32.7 bits (75), Expect = 0.29
Identities = 44/298 (14%), Positives = 83/298 (27%), Gaps = 103/298 (34%)
Query: 273 DILQRKVHIISGDISQPSLGISSHDQQFIQHHIHVIIHAAASLRFDELIQDAFTL---NI 329
+++ K +I+ DI+ P ++ + H + H AA D + + + N
Sbjct: 64 NLIGFKGEVIAADINNPLD-----LRRLEKLHFDYLFHQAA--VSDTTMLNQELVMKTNY 116
Query: 330 QATRELLDLATRCSQLKAILHVST--LY---THSYREDIQEEFYPPLFSYEDLAHVMQTT 384
QA LL++A +++ S+ +Y E P
Sbjct: 117 QAFLNLLEIARSKK--AKVIYASSAGVYGNTKAPNVVGKNES---PE------------- 158
Query: 385 NQEELEILSSMLFGGIYNNSYSFTKAIGESVVEKYLYKLPLAMVRPSIVVSTWKEPIVGW 444
N Y F+K + V + +R
Sbjct: 159 ------------------NVYGFSKLCMDEFVLSHSNDNVQVGLRYF------------- 187
Query: 445 SNNLYGPGGAAAGAALGLIHTFY--AKHDKKC----------DLIPV-DVATNMMLGVVW 491
N+YGP ++ A K+ D + + DV +
Sbjct: 188 --NVYGPREFYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVK---- 241
Query: 492 KTALDHGHVAPPASLVAPIPRTDPPVYNLSISSSYPITWLEYMNSVQAA-GKCDEQYI 548
A+ VYN + S ++ E ++ ++ G YI
Sbjct: 242 --AMKAQKSG---------------VYN--VGYSQARSYNEIVSILKEHLGDFKVTYI 280
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 32.7 bits (74), Expect = 0.30
Identities = 13/73 (17%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 48 KKDKKDKDRDKE----KEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEK 103
+ + ++K + ++K K+ E+D+ ++ K+ + +KE+ K K S
Sbjct: 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVT 438
Query: 104 EKKKEKKDKKEKS 116
+K E+
Sbjct: 439 NEKGTDSQAMEEE 451
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc
metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis}
SCOP: d.92.1.14 d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A*
1pwq_A* 1pwv_A 1zxv_A* 1pwu_A* 1pww_A 3kwv_C
Length = 776
Score = 33.0 bits (74), Expect = 0.33
Identities = 30/186 (16%), Positives = 57/186 (30%), Gaps = 2/186 (1%)
Query: 45 SSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERK-ESKPKESSSEK 103
+K + K KD ++ K +E+ KE K V + K ++ V + E+ E P + E
Sbjct: 15 EKNKDENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLEKVPSD-VLEM 73
Query: 104 EKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHP 163
K K K E ++KK+ K+ ++ + + L+
Sbjct: 74 YKAIGGKIYIVDGDITKHISLEALSEDKKKIKDIYGKDALLHEHYVYAKEGYEPVLVIQS 133
Query: 164 PPPAPTPTQKSPVKTKEKEKEKESSTTHDKHSKHKHKKKDKHGDKTNPKEKDAKSKEKES 223
T+K+ E K + ++ + K
Sbjct: 134 SEDYVENTEKALNVYYEIGKILSRDILSKINQPYQKFLDVLNTIKNASDSDGQDLLFTNQ 193
Query: 224 HKSSAG 229
K
Sbjct: 194 LKEHPT 199
>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold,
cupid domain, short-chain dehydrogenase/reduc NADPH;
2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A
Length = 369
Score = 32.6 bits (74), Expect = 0.37
Identities = 30/232 (12%), Positives = 63/232 (27%), Gaps = 73/232 (31%)
Query: 307 VIIHAAASLRFDELIQDAFTLNIQATRELLDLATRCSQLKAILHVSTLYTHSYREDIQEE 366
I+H A R + ++ N+ +LD+ TR ++ AIL S++
Sbjct: 49 FIVHLAGVNRPEH-DKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQAT--------- 98
Query: 367 FYPPLFSYEDLAHVMQTTNQEELEILSSMLFGGIYNNSYSFTKAIGESVVEKY--LYKLP 424
+N Y +K GE ++ +Y Y
Sbjct: 99 ----------------------------------QDNPYGESKLQGEQLLREYAEEYGNT 124
Query: 425 LAMVRPSIVVSTWKEPIVGWSNNLYGPGGAAAGAALGLIHTFY--AKHDKKCDLIPVDVA 482
+ + R NL+G +I TF +++ + +V
Sbjct: 125 VYIYRWP---------------NLFGKWC--KPNYNSVIATFCYKIARNEEIQVNDRNVE 167
Query: 483 TNMMLGVVWKTALDHGHVAPPASLVAPIPRTDPPVYNLSISSSYPITWLEYM 534
+ + + P + V + + + +
Sbjct: 168 LTLNYVDDIVAEI--------KRAIEGTPTIENGVPTVPNVFKVTLGEIVDL 211
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 32.8 bits (74), Expect = 0.38
Identities = 14/90 (15%), Positives = 39/90 (43%), Gaps = 2/90 (2%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK 106
+ K ++ + K D +K++ ++ ++ + K K++K K+ K+K
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQ--LADARRDLKSAKADAKVMKDAKTKKVVESKKKA 516
Query: 107 KEKKDKKEKSHKHKDKDRERDKDEKKEQKE 136
++ +++ + + DRE +K +
Sbjct: 517 VQRLEEQLMKLEVQATDREENKQIALGTSK 546
Score = 32.4 bits (73), Expect = 0.46
Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 40 NPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKES 99
+ + + + K K+++ + + S+K K +K K+ ESK K
Sbjct: 458 HQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAV 517
Query: 100 SSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKS 139
+E+ + + + D++E K+ S
Sbjct: 518 QRLEEQLMKLEVQA------------TDREENKQIALGTS 545
Score = 28.6 bits (63), Expect = 6.4
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 87 KEKERKESKPKESSSEKEKKKEKKDKKEKSHKH 119
+ E ++ KE EK K KE+ +K K +
Sbjct: 137 AQTEARKQMSKE---EKLKIKEENEKLLKEYGF 166
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 32.4 bits (73), Expect = 0.39
Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 2/123 (1%)
Query: 31 STSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKE-KDKSAVSSKEKEKD-KVSSKE 88
T + S ++ + K + E +KK++E + KEKE + K + KE
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363
Query: 89 KERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSH 148
K + K+ +++KK E K K + K R+ + + Q S+ +
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDK 423
Query: 149 NSK 151
K
Sbjct: 424 EKK 426
Score = 31.6 bits (71), Expect = 0.85
Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 10/118 (8%)
Query: 31 STSTSSSTSNPTNSSSSKKDKKDKDRDKEKE---------KEKKDKEKDKSAVSSKEKEK 81
+ S S + + + + + KE+E KEK+ + K+ EK
Sbjct: 311 TDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEK-ELHEKFD 369
Query: 82 DKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKS 139
+ E+K+ + K+ S + E K+ K + K KE K+
Sbjct: 370 RLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKKN 427
Score = 30.1 bits (67), Expect = 2.3
Identities = 18/115 (15%), Positives = 47/115 (40%), Gaps = 6/115 (5%)
Query: 45 SSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKE 104
D D +E + ++++ ++KE++ + KE + + +EKE
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363
Query: 105 KKKE----KKDKKEKSHKHKDKDR--ERDKDEKKEQKESKSSSKIVSSSHNSKEP 153
++ KK +++ K +DK + + + + K++K + + S +
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQT 418
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 32.7 bits (75), Expect = 0.39
Identities = 30/216 (13%), Positives = 53/216 (24%), Gaps = 53/216 (24%)
Query: 10 SSSSAHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKE-------K 62
+ D T + + D K + EKE K
Sbjct: 493 EEAYTIEDIEAGSDT--------KTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDK 544
Query: 63 EKKDKEKDKSAVSS---------KEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKK 113
+ E K+ + +E+ S EK + + ++ + K
Sbjct: 545 LVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKA 604
Query: 114 EKSHKHKDKDRERDKDEKKEQKESKS-SSKIVSSSHNSKEPASGSQLISHPPPPAPTPTQ 172
+ K +E S + I +E A Q
Sbjct: 605 KYIAK---------------YEELASLGNIIRGRYLAKEE----------EKKQAIRSKQ 639
Query: 173 KSPVKTKEKEKEKESSTTHDKHSKHKHKKKDKHGDK 208
++ EK ++ K +KKD GD
Sbjct: 640 EASQMAAMAEKLAAQ---RKAEAEKKEEKKDTEGDV 672
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 31.2 bits (70), Expect = 0.45
Identities = 16/92 (17%), Positives = 38/92 (41%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK 106
K KK + K++ +K + + + + S + E +++ +E ++K
Sbjct: 56 RKHHKKGITEEVAKKRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEK 115
Query: 107 KEKKDKKEKSHKHKDKDRERDKDEKKEQKESK 138
K+ + K+ K K + K K++ K +
Sbjct: 116 KKAEKAARKAEKAKSAGTQSSKFSKQQAKGAF 147
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 32.2 bits (73), Expect = 0.51
Identities = 8/65 (12%), Positives = 27/65 (41%)
Query: 51 KKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKK 110
K +++ + + +EK A + +++ +K + P ++ ++E+K
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTA 326
Query: 111 DKKEK 115
+ +
Sbjct: 327 GSQSQ 331
Score = 28.7 bits (64), Expect = 5.9
Identities = 11/87 (12%), Positives = 27/87 (31%), Gaps = 3/87 (3%)
Query: 54 KDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKK 113
D K + +K +++ + + +E+K +E+ K K +
Sbjct: 251 ADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ---LAREKKLYANMFERLAEEENKAKAEAS 307
Query: 114 EKSHKHKDKDRERDKDEKKEQKESKSS 140
H + +E K + +
Sbjct: 308 SGDHPTDTEMKEEQKSNTAGSQSQVET 334
>1jad_A PLC-beta, phospholipase C beta; alpha helical coiled coil,
hydrolase; 2.40A {Meleagris gallopavo} SCOP: h.4.10.1
Length = 251
Score = 31.7 bits (71), Expect = 0.55
Identities = 13/89 (14%), Positives = 39/89 (43%)
Query: 51 KKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKK 110
KK + + ++ + DK+A +KE + +E + E ++ ++K E+K
Sbjct: 141 KKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEEK 200
Query: 111 DKKEKSHKHKDKDRERDKDEKKEQKESKS 139
+ + + + + + + +++ K+
Sbjct: 201 QAENLRAIQEKEGQLQQEAVAEYEEKLKT 229
Score = 31.3 bits (70), Expect = 0.77
Identities = 11/90 (12%), Positives = 36/90 (40%)
Query: 48 KKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKK 107
KK + K D+ + + +K KE + + K K + +++ ++
Sbjct: 140 KKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKLLTEKTARYQQKLEE 199
Query: 108 EKKDKKEKSHKHKDKDRERDKDEKKEQKES 137
++ + + + + ++ E +E+ ++
Sbjct: 200 KQAENLRAIQEKEGQLQQEAVAEYEEKLKT 229
Score = 30.9 bits (69), Expect = 0.84
Identities = 15/90 (16%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK 106
S+ + KD + E ++ + + +S +E+ K KE + + + +
Sbjct: 132 SESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLK---KEINNSHIQEVVQTIKLLTE 188
Query: 107 KEKKDKKEKSHKHKDKDRERDKDEKKEQKE 136
K + +++ K + R + E + Q+E
Sbjct: 189 KTARYQQKLEEKQAENLRAIQEKEGQLQQE 218
Score = 29.8 bits (66), Expect = 2.2
Identities = 13/90 (14%), Positives = 33/90 (36%)
Query: 54 KDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKK 113
K + E KD +K A + S+ +K +E KE ++ ++ + K
Sbjct: 126 KALKESSESNIKDIKKKLEAKRLDRIQVMMRSTSDKAAQERLKKEINNSHIQEVVQTIKL 185
Query: 114 EKSHKHKDKDRERDKDEKKEQKESKSSSKI 143
+ + + +K + + + ++
Sbjct: 186 LTEKTARYQQKLEEKQAENLRAIQEKEGQL 215
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 32.1 bits (74), Expect = 0.55
Identities = 9/62 (14%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 57 DKEKEKEKKDKEKDKSAVSSKEKEKDKVSSK---EKERKESKPKESSSEKEKKKEKKDKK 113
D E+ + +++K + ++ K R+++ + +E+ + KE ++
Sbjct: 797 DVEEWRRRQEKRLKEL-----LALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQA 851
Query: 114 EK 115
E+
Sbjct: 852 ER 853
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 32.2 bits (72), Expect = 0.58
Identities = 13/93 (13%), Positives = 39/93 (41%), Gaps = 10/93 (10%)
Query: 51 KKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKK 110
+ K+ ++KE+ +E K E ++ ++ KE+ER K +E++
Sbjct: 509 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQL-LKEQERT---------LALKLQEQE 558
Query: 111 DKKEKSHKHKDKDRERDKDEKKEQKESKSSSKI 143
++ + + + + + + + + + + I
Sbjct: 559 QLLKEGFQKESRIMKNEIQDLQTKMRRRKACTI 591
Score = 30.7 bits (68), Expect = 1.6
Identities = 13/97 (13%), Positives = 39/97 (40%), Gaps = 5/97 (5%)
Query: 48 KKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKK 107
+ ++ + K KE + ++ KEKE + K + + S +++ ++
Sbjct: 456 QAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQ 515
Query: 108 EKKDKKEKSHKH-----KDKDRERDKDEKKEQKESKS 139
+ K+ +H + + +R + K++++
Sbjct: 516 MMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 552
Score = 29.9 bits (66), Expect = 3.1
Identities = 16/103 (15%), Positives = 42/103 (40%), Gaps = 10/103 (9%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK 106
S + + +++ E+ ++K++S +E K E +R + E+E+
Sbjct: 498 SAQASAKMLHEMQRKNEQMMEQKERSY---QEHLKQLTEKMENDRVQLL-----KEQERT 549
Query: 107 KEKK--DKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSS 147
K ++++ + K+ K+E ++ + K + S
Sbjct: 550 LALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKACTIS 592
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 31.8 bits (71), Expect = 0.61
Identities = 10/107 (9%), Positives = 30/107 (28%)
Query: 36 SSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESK 95
+ ++ K + KK + K + ++ K +K +
Sbjct: 2 EAVPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFAL 61
Query: 96 PKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSK 142
+ ++ EK K ++ + R ++ ++
Sbjct: 62 KTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAE 108
Score = 29.1 bits (64), Expect = 4.3
Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 7/115 (6%)
Query: 39 SNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKE 98
+ K K K+K + + +K K + E K K
Sbjct: 2 EAVPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKK-------KRRNFAELKVKR 54
Query: 99 SSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEP 153
+ K +K +++ ++ + + + + ++ + + EP
Sbjct: 55 LRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEP 109
Score = 27.9 bits (61), Expect = 9.9
Identities = 16/109 (14%), Positives = 40/109 (36%), Gaps = 5/109 (4%)
Query: 54 KDRDKEKEKEKKDKEKDKSAVSSKEKEKDKV-----SSKEKERKESKPKESSSEKEKKKE 108
+ ++K+K K V + K K + +K+R+ + ++K
Sbjct: 2 EAVPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFAL 61
Query: 109 KKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASGS 157
K +K + +K + K+ ++ + +++ + N PA
Sbjct: 62 KTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPK 110
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 31.8 bits (72), Expect = 0.72
Identities = 16/72 (22%), Positives = 25/72 (34%)
Query: 18 PHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSK 77
K + T ++ +S+ K K+ E K +E+ S
Sbjct: 524 EVLQSQKGQESEYGNITYPPAMKNAHAKASRTSSKHKEDVYENLHTKNKREEKVKKQRSA 583
Query: 78 EKEKDKVSSKEK 89
+KEK K S K K
Sbjct: 584 DKEKSKGSLKRK 595
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 31.4 bits (70), Expect = 0.73
Identities = 12/97 (12%), Positives = 32/97 (32%)
Query: 58 KEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSH 117
+ K+ EK + V + +++ + +K+ K ++ + K +
Sbjct: 187 RILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKKVEAPKK 246
Query: 118 KHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPA 154
+ K +K + K ++ + PA
Sbjct: 247 VDPKAAKTTPAATKATPAATKVAPKTQAAKTTTPAPA 283
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 31.2 bits (70), Expect = 0.74
Identities = 15/99 (15%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Query: 48 KKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKK 107
KK + E+E + E+D + S + ++ + + E K K+ +KE +
Sbjct: 78 SIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQN-EIKRKSEKQEDLKKEMLE 136
Query: 108 EKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSS 146
+K E +++ + + ++ K+ + +
Sbjct: 137 LEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEP 175
Score = 31.2 bits (70), Expect = 0.79
Identities = 12/92 (13%), Positives = 37/92 (40%), Gaps = 4/92 (4%)
Query: 48 KKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKK 107
K ++ + K + K + E+E S E +K + + + +E +
Sbjct: 59 KLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELR---SLNIEEDIAKERSNQANRE-IE 114
Query: 108 EKKDKKEKSHKHKDKDRERDKDEKKEQKESKS 139
+++ ++ + ++ ++ + +K E +S
Sbjct: 115 NLQNEIKRKSEKQEDLKKEMLELEKLALELES 146
>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for
structural genomics of infectio diseases, csgid, niaid;
HET: NAD SUC; 3.00A {Bacillus anthracis}
Length = 346
Score = 31.3 bits (72), Expect = 0.75
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 297 DQQFIQHHIHVIIHAAASLRFDELIQD--AF--TLNIQATRELLDLATRCSQLKAILHVS 352
+ + + VI++ AA D I++ F T N+ T LL+ + ++ VS
Sbjct: 91 EHVIKERDVQVIVNFAAESHVDRSIENPIPFYDT-NVIGTVTLLE-LVKKYPHIKLVQVS 148
Query: 353 T 353
T
Sbjct: 149 T 149
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 31.5 bits (72), Expect = 0.86
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 74 VSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKH 119
+S+ +K K+S + + K + E K KKK K KK H H
Sbjct: 728 LSNFQKGDVKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHHHHH 773
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 31.2 bits (70), Expect = 0.89
Identities = 17/81 (20%), Positives = 32/81 (39%)
Query: 57 DKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKS 116
D + ++D++ K S K E+ K++ + +KK KK+ K+K
Sbjct: 206 DYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKKKR 265
Query: 117 HKHKDKDRERDKDEKKEQKES 137
+ KD ++K S
Sbjct: 266 WNRPKMSLAQKKDRVAQKKAS 286
>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain
dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A
{Salmonella typhi} SCOP: c.2.1.2
Length = 347
Score = 31.0 bits (71), Expect = 0.92
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 300 FIQHHIHVIIHAAASLRFDELIQDA---FTLNIQATRELLDLATRCSQLKAILHVST 353
++ H A + I + F +N+ T LL+ + + I++ ST
Sbjct: 69 ITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSST 125
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 31.0 bits (70), Expect = 1.0
Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 5/83 (6%)
Query: 50 DKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEK 109
+K D K K +K + D + + E E + E E K
Sbjct: 236 TRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEF-----NEVAFENEINKRD 290
Query: 110 KDKKEKSHKHKDKDRERDKDEKK 132
E ++ ++ ++
Sbjct: 291 GAYIELCVCSVEEAKKNTQEVVT 313
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 30.4 bits (68), Expect = 1.0
Identities = 17/98 (17%), Positives = 46/98 (46%), Gaps = 1/98 (1%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEK-DKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEK 105
K+ KKD + K++ + K+ +S V + + K S++ E +++ + + E ++
Sbjct: 58 RKQHKKDIHAEAVKKRRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKE 117
Query: 106 KKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKI 143
+ +K ++K+ K + ++ + + + KI
Sbjct: 118 RIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKI 155
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule,
tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus
norvegicus} PDB: 3ryf_E* 3ryh_E* 3ryi_E* 1sa0_E* 1sa1_E*
1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E*
3n2g_E* 3n2k_E*
Length = 143
Score = 29.6 bits (66), Expect = 1.3
Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 30 PSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEK 89
++ +P+ KK + ++R K +E E K + E+E + + +E
Sbjct: 32 EFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELL---KHLAEKREHEREVIQKAIEEN 88
Query: 90 ERKESKPKESSSEK-EKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKS 139
KE ++K E KE ++ + + +++++ +E ++ KE K
Sbjct: 89 NNFIKMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEEVRKNKELKE 139
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 31.0 bits (69), Expect = 1.5
Identities = 28/140 (20%), Positives = 49/140 (35%), Gaps = 3/140 (2%)
Query: 22 KDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEK 81
K + S N + + K+ K+KD K + K D E V +K
Sbjct: 728 KGSVKDLGINPEWISKVENLNAALNEFKNGKNKDFSKVTQ-AKSDLENSVKDVIINQKVT 786
Query: 82 DKVSSKEKERKESKPKE--SSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKS 139
DKV + + +K S E+ K KE+ + K+ + + + E +S
Sbjct: 787 DKVDNLNQAVSVAKAMGDFSRVEQVLADLKNFSKEQLAQQAQKNEDFNTGKNSELYQSVK 846
Query: 140 SSKIVSSSHNSKEPASGSQL 159
+S + N + L
Sbjct: 847 NSVNKTLVGNGLSGIEATAL 866
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 30.1 bits (68), Expect = 1.5
Identities = 15/80 (18%), Positives = 33/80 (41%)
Query: 114 EKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHPPPPAPTPTQK 173
E+ K + D+ E+++ E +++ + S +G + + P APT +
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEEL 61
Query: 174 SPVKTKEKEKEKESSTTHDK 193
+ K + E E + S +
Sbjct: 62 AAAKAQIAELEAKLSEMEHR 81
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET:
MSE; 2.33A {Homo sapiens}
Length = 168
Score = 29.7 bits (66), Expect = 1.9
Identities = 18/90 (20%), Positives = 36/90 (40%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK 106
+ + + +DR + E + + S + K + E ERKE++ + SEKEK
Sbjct: 76 AILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135
Query: 107 KEKKDKKEKSHKHKDKDRERDKDEKKEQKE 136
+ D K + + + + K +
Sbjct: 136 NLEIDLNYKLKSLQQRLEQEVNEHKVTKAR 165
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 30.0 bits (67), Expect = 2.2
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 87 KEKERKESKPKESSSEKEKKKEKKDKKEKSHKH 119
++E+K S+ KE EK+ KEK+D + + +++
Sbjct: 113 VQREKKLSRTKE---EKKAIKEKQDAEAEPYRY 142
>1zro_A Erythrocyte binding antigen region II; EBA-175, RII, DBL, invasion,
HOST, malaria, disease, glycophorin, glycan, sialic
acid; HET: SO4; 2.25A {Plasmodium falciparum} SCOP:
a.264.1.1 a.264.1.1 PDB: 1zrl_A*
Length = 602
Score = 30.3 bits (68), Expect = 2.2
Identities = 21/153 (13%), Positives = 46/153 (30%), Gaps = 3/153 (1%)
Query: 58 KEKEKEKKDKEKDKSAVSSKEKEKD-KVSSKEKERK-ESKPKESSSEKEKKKEKKDKKEK 115
+ + K K K K+ + EK+ + E + ++ + +K KE
Sbjct: 190 ERDNRAKLPKSKCKNNALYEACEKECIDPCMKYRDWIIRSKFEWHTLSKEYETQKVPKEN 249
Query: 116 SHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHPPPPAPTPTQKSP 175
+ + K E D K + ++ +++ +
Sbjct: 250 AENYLIKISENKNDAKVSLLLNNCDAEYSKYCDCKHTTTLVKSVLNGNDNTIKEKREHID 309
Query: 176 VK-TKEKEKEKESSTTHDKHSKHKHKKKDKHGD 207
+ + +K S T+ K + K K D
Sbjct: 310 LDDFSKFGCDKNSVDTNTKVWECKKPYKLSTKD 342
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 29.5 bits (66), Expect = 2.4
Identities = 8/33 (24%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 87 KEKERKESKPKESSSEKEKKKEKKDKKEKSHKH 119
+KE+K+ + EK++ + +++K E+ +K
Sbjct: 103 LQKEQKKQLTSQ---EKKQIRLEREKFEEDYKF 132
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal
toxic shock S; 3.30A {Streptococcus pyogenes}
Length = 146
Score = 28.7 bits (63), Expect = 2.7
Identities = 17/95 (17%), Positives = 39/95 (41%), Gaps = 3/95 (3%)
Query: 45 SSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKE 104
++ KK + ++ + ++ + +++ + + + SSEKE
Sbjct: 38 KELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLELDQLSSEKE 97
Query: 105 KKKEKKDKKEKSHKHKDKDRE---RDKDEKKEQKE 136
+ +K K E+ + D R+ RD D +E K+
Sbjct: 98 QLTIEKAKLEEEKQISDASRQSLRRDLDASREAKK 132
>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NAD complex, protein-nucleotide comple binding
protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica}
PDB: 2pzl_A* 2pzk_A*
Length = 330
Score = 29.4 bits (67), Expect = 3.1
Identities = 12/81 (14%), Positives = 33/81 (40%), Gaps = 6/81 (7%)
Query: 264 FDRLKNEQADILQR--KVHIISGDISQPSLGISSHDQQFIQHHIHVIIHAAASLRFDELI 321
D + ++L + +I G ++ L ++ F ++H+AA+ + +
Sbjct: 50 IDNFATGKREVLPPVAGLSVIEGSVTDAGLL----ERAFDSFKPTHVVHSAAAYKDPDDW 105
Query: 322 QDAFTLNIQATRELLDLATRC 342
+ N+Q + + A++
Sbjct: 106 AEDAATNVQGSINVAKAASKA 126
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 27.8 bits (61), Expect = 3.2
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 147 SHNSKEPASGSQLISHPPPPAPTPTQKSPVKTKE 180
+H+ +SG +++ P P T K KT E
Sbjct: 2 AHHHHHHSSGLEVLFQGPAPKSGSTGKICKKTPE 35
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane
protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Length = 602
Score = 29.7 bits (65), Expect = 3.4
Identities = 18/193 (9%), Positives = 66/193 (34%)
Query: 34 TSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKE 93
T + S+ N + ++ D + EK+DKE + ++K+ + + + K
Sbjct: 20 TPPAWSSFGNKTIWGGNEWVDDSPTRSDIEKRDKEITAYKNTLSAQQKENENKRTEAGKR 79
Query: 94 SKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEP 153
++ EK++ K + + +E + + ++ + +
Sbjct: 80 LSAAIAAREKDENTLKTLRAGNADAADITRQEFRLLQAELREYGFRTEIAGYDALRLHTE 139
Query: 154 ASGSQLISHPPPPAPTPTQKSPVKTKEKEKEKESSTTHDKHSKHKHKKKDKHGDKTNPKE 213
+ + +P + + ++++K+ +++ +++++ D +
Sbjct: 140 SRMLFADADSLRISPREARSLIEQAEKRQKDAQNADKKAADMLAEYERRKGILDTRLSEL 199
Query: 214 KDAKSKEKESHKS 226
+ +
Sbjct: 200 EKNGGAALAVLDA 212
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 29.0 bits (64), Expect = 3.5
Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 51 KKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKK 110
KK K + K E+ ++ K+A K ER + KE + + + K
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAII-------LERNAAYQKEYETAERNIIQAK 66
Query: 111 DKKEKSHKHKDKDRER 126
+ + + + + +
Sbjct: 67 RDAKAAGSYYVEAQHK 82
>2l16_A SEC-independent protein translocase protein tatad; membrane
protein, protein transport; NMR {Bacillus subtilis}
Length = 78
Score = 27.2 bits (60), Expect = 3.6
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 83 KVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKH 119
K ++K + K ++S+ K++K E H H
Sbjct: 41 KSATKSLVSGDEKEEKSAELTAVKQDKNAGLEHHHHH 77
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 29.4 bits (66), Expect = 3.9
Identities = 9/70 (12%), Positives = 24/70 (34%), Gaps = 8/70 (11%)
Query: 82 DKVSSKEKERKESKP--------KESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKE 133
D V + + +E K++ ++ ++K + +K K + + + E
Sbjct: 605 DPVELERVDSREDALVFGRIITLKDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSS 664
Query: 134 QKESKSSSKI 143
+ K
Sbjct: 665 SPAKAHAPKA 674
>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk,
right handed coiled-coil, ATPase/SY ATP binding,
membrane, hydrolase; 2.25A {Thermus thermophilus} PDB:
3k5b_G 3j0j_I
Length = 105
Score = 27.7 bits (60), Expect = 4.0
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 75 SSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDE 130
S EKEK + E +KE++ + +E E K ++ + K+ + + RER++ E
Sbjct: 10 SLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAE 65
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 29.7 bits (67), Expect = 4.1
Identities = 6/40 (15%), Positives = 15/40 (37%)
Query: 58 KEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPK 97
+E+ K ++ D +E+ + E+ + P
Sbjct: 732 RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRTPL 771
>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose
metabolism, isomerase, NAD, spine; HET: NAD; 2.7A
{Bacillus anthracis}
Length = 330
Score = 28.9 bits (66), Expect = 4.3
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 264 FDRLKNEQADILQRKVHIISGDISQPSLGISSHDQQFIQHHIHVIIHAAAS 314
D L+ D + +GD+ + F Q +I ++H AA
Sbjct: 31 VDNLQTGHEDAITEGAKFYNGDLRDKAF----LRDVFTQENIEAVMHFAAD 77
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A
{Vibrio fischeri} PDB: 3pvz_A*
Length = 399
Score = 29.3 bits (66), Expect = 4.3
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 300 FIQHHIHVIIHAAA-----SLRFDELIQDAFTLNIQATRELLDLATRCSQLKAILHVST 353
+++ +A S + + +N+ T + + + K VST
Sbjct: 108 KADGQYDYVLNLSALKHVRSEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFC-VST 165
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 29.1 bits (66), Expect = 5.0
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 56 RDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEK 115
++ E++ ++ KEKD +AV S+E EK + E + +E + +K ++K +E
Sbjct: 397 KELEQKLDEVRKEKD-AAVQSQEFEK----AASLRDTEQRLREQVEDTKKSWKEKQGQEN 451
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct
genomics, riken structural genomics/proteomics
initiative; NMR {Mus musculus} SCOP: b.34.13.3
Length = 133
Score = 27.8 bits (61), Expect = 5.1
Identities = 6/62 (9%), Positives = 21/62 (33%)
Query: 57 DKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKS 116
K + ++ + +S ++ ++ ++ ++RK + + EK
Sbjct: 68 ALTKTVKDAVQKNSEKYLSELAEQPERKITRNQKRKHDEINHVQKTYAEMDPTTAALEKE 127
Query: 117 HK 118
Sbjct: 128 SG 129
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 28.2 bits (62), Expect = 5.3
Identities = 9/85 (10%), Positives = 32/85 (37%), Gaps = 4/85 (4%)
Query: 52 KDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKD 111
K+ ++ ++ E + S+E E E + +++ + + + ++ K +
Sbjct: 16 KELSMKYKQSFQEARDELVEFQEGSRELEA----ELEAQLVQAEQRNRDLQADNQRLKYE 71
Query: 112 KKEKSHKHKDKDRERDKDEKKEQKE 136
+ K + + + K + +
Sbjct: 72 VEALKEKLEHQYAQSYKQVSVLEDD 96
>3m1m_A ORF904; primase, polymerase, replication; 1.85A {Sulfolobus
islandicus}
Length = 335
Score = 28.7 bits (63), Expect = 5.5
Identities = 27/161 (16%), Positives = 54/161 (33%), Gaps = 4/161 (2%)
Query: 3 YSVKSSSSSSSAHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEK 62
Y + S + H + K K+ + + + + K +K K
Sbjct: 143 YVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLYNELKEIS--KVDLKSLLRFLAEKGKRL 200
Query: 63 EKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKES--SSEKEKKKEKKDKKEKSHKHK 120
+ K + K++E+D V E+ RKE ++S EK K++ K K
Sbjct: 201 GITLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKPVEKIKEEICTKSPPKLIKEI 260
Query: 121 DKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLIS 161
+ + D ++ + H +P +L+
Sbjct: 261 ICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELLP 301
>2ap3_A Conserved hypothetical protein; structural genomics, tetra helix,
PSI, protein structure INI midwest center for structural
genomics; 1.60A {Staphylococcus aureus subsp} SCOP:
a.24.27.1
Length = 199
Score = 28.3 bits (62), Expect = 6.0
Identities = 22/124 (17%), Positives = 47/124 (37%), Gaps = 3/124 (2%)
Query: 30 PSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEK 89
P+++T+ K K D++ K K+ + ++ K ++ KD +
Sbjct: 8 PTSTTTDKKEIKAYLKQVDKIKDDEEPIKTVGKKIAELDEKKKKLTEDVNSKDTAVRGKA 67
Query: 90 ER---KESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIVSS 146
+ K + + EKE+ KK +++ D + ++KE K+ K
Sbjct: 68 VKDLIKNADDRLKEFEKEEDAIKKSEQDFKKAKSHVDNIDNDVKRKEVKQLDDVLKEKYK 127
Query: 147 SHNS 150
H+
Sbjct: 128 LHSD 131
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 28.5 bits (64), Expect = 6.4
Identities = 13/95 (13%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSE---- 102
S + K+ ++ KEK +K + ++ ++ + ++ + + E +
Sbjct: 173 SGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDE 232
Query: 103 -KEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKE 136
+ + + ++ E+ + K + KK++KE
Sbjct: 233 AEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKE 267
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 28.7 bits (64), Expect = 6.4
Identities = 18/146 (12%), Positives = 42/146 (28%), Gaps = 12/146 (8%)
Query: 58 KEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSH 117
++ E + + + + +KE+ + + + + K+KKD
Sbjct: 656 EDNEADVRKSIDNFHVLKNKEEYEICN------------VDDNCRSQNNKKKKDIVTILL 703
Query: 118 KHKDKDRERDKDEKKEQKESKSSSKIVSSSHNSKEPASGSQLISHPPPPAPTPTQKSPVK 177
K K++ K K + K+ + + + PP P+ +P
Sbjct: 704 KELKDKIVSCKNQHKATKGKECCDKLPKIADGDTSDDEEQEDEAPAPPKPKPPSTPNPCV 763
Query: 178 TKEKEKEKESSTTHDKHSKHKHKKKD 203
K++ S
Sbjct: 764 RKDQSGTHIVSVEDVAEWMQGVTHDR 789
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 28.2 bits (62), Expect = 6.5
Identities = 14/67 (20%), Positives = 29/67 (43%)
Query: 54 KDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKK 113
K EK ++ K +++ S+ K+++ + +S +K E + E EK+K +K
Sbjct: 12 KLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGA 71
Query: 114 EKSHKHK 120
Sbjct: 72 FYVPAEA 78
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 6.5
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 270 EQADI--LQRKVHIISGDISQPSLGISS 295
E+ + LQ + + + D S P+L I +
Sbjct: 18 EKQALKKLQASLKLYADD-SAPALAIKA 44
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Length = 136
Score = 27.6 bits (61), Expect = 7.1
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 155 SGSQLISHPPPPAPTPTQKSPVKTKEKEKEKESSTTHDKHSKHKHKKKDK 204
+ ++ + P PA + E + + T HD+ HK+K +
Sbjct: 5 TTTEAGASAPSPAVDGAVNQTARQAEADGT-DIVTDHDRGVHGYHKQKAE 53
>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell
projection, disease mutation, membrane, phosphoprotein,
polymorphism; NMR {Homo sapiens}
Length = 216
Score = 28.2 bits (62), Expect = 7.2
Identities = 14/104 (13%), Positives = 35/104 (33%), Gaps = 2/104 (1%)
Query: 6 KSSSSSSSAHPSPHKNKDKDSSAIPSTSTSSSTSNPT--NSSSSKKDKKDKDRDKEKEKE 63
+ + P + K++S + + P S+SS ++ +D +++
Sbjct: 106 QEHLNGPLPVPFTNGEIQKENSREALAEAALESPRPALVRSASSDTSEELNSQDSPPKQD 165
Query: 64 KKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKK 107
S+ + +KE+ ++ K + KK
Sbjct: 166 STAPSSTSSSDPILDFNISLAMAKERAHQKRSSKRAPQMDWSKK 209
Score = 27.8 bits (61), Expect = 8.5
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 4 SVKSSSSSSSAHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKE 63
V+S+SS +S + + K S PS+++SS N S + K+R +K
Sbjct: 143 LVRSASSDTSEELNSQDSPPKQDSTAPSSTSSSDPILDFNISLAMA----KERAHQKRSS 198
Query: 64 KKDKEKDKS 72
K+ + D S
Sbjct: 199 KRAPQMDWS 207
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain,
rossmann fold, oxidoreductase; 1.90A {Escherichia coli}
PDB: 1x14_A* 1x15_A* 2bru_A*
Length = 401
Score = 28.4 bits (64), Expect = 7.4
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 160 ISHPPPP---APTPTQKSPVKTKEKEKEK 185
I+ P PP + P + K +EK
Sbjct: 373 ITWPAPPIQVSAQPQAAQKAAPEVKTEEK 401
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 28.3 bits (64), Expect = 7.5
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 239 IYILLRSKKNKTVQERLAEQFKDELFDRLKNEQADIL 275
+ I R+ K + LA + + L+N+QADIL
Sbjct: 146 LKIYARNVKTG---QYLAALYGYAYINSLENQQADIL 179
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 28.1 bits (62), Expect = 7.6
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 1/84 (1%)
Query: 52 KDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKD 111
K K + + +KE D++ K E D+ E E + K ++E E K +
Sbjct: 5 KKKMQMLKLDKENALDRADEAEADKKAAE-DRSKQLEDELVSLQKKLKATEDELDKYSEA 63
Query: 112 KKEKSHKHKDKDRERDKDEKKEQK 135
K+ K + +++ E
Sbjct: 64 LKDAQEKLELAEKKATDAEADVAS 87
>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1,
oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium
frigidimaris}
Length = 312
Score = 28.4 bits (64), Expect = 7.7
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 300 FIQHHIHVIIHAAA--SLRFDELIQDAFTLNIQATRELLDLA 339
H I I AA S ++ A+ LN+ + +L+LA
Sbjct: 64 VEVHKITDIYLMAALLSATAEKNPAFAWDLNMNSLFHVLNLA 105
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence
factor, S active protein, toxin; 3.04A {Streptococcus
pyogenes serotype M1} PDB: 2xny_M
Length = 155
Score = 27.7 bits (60), Expect = 7.9
Identities = 12/90 (13%), Positives = 31/90 (34%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKK 106
++ + + ++ KE EKE ++ + + ++ +
Sbjct: 64 DQRKDLETKLKELQQDYDLAKESTSWDRQRLEKELEEKKEALELAIDQASRDYHRATALE 123
Query: 107 KEKKDKKEKSHKHKDKDRERDKDEKKEQKE 136
KE ++KK+ D+ + +KE
Sbjct: 124 KELEEKKKALELAIDQASQDYNRANVLEKE 153
>2wn4_A ADP-ribosyltransferase enzymatic component; CDTA, ACTIN-ADPRT,
binary toxin; 1.85A {Clostridium difficile} PDB: 2wn5_A
2wn7_A* 2wn8_A 2wn6_A*
Length = 463
Score = 28.4 bits (62), Expect = 8.6
Identities = 20/115 (17%), Positives = 39/115 (33%), Gaps = 1/115 (0%)
Query: 31 STSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKE-KDKVSSKEK 89
+ + + S + K + E KDKEK K + + + K+ EK
Sbjct: 27 LLPNNIYAQDLQSYSEKVCNTTYKAPIERPEDFLKDKEKAKEWERKEAERIEQKLERSEK 86
Query: 90 ERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSSKIV 144
E ES K+S + + + + + +++E + K V
Sbjct: 87 EALESYKKDSVEISKYSQTRNYFYDYQIEANSREKEYKELRNAISKNKIDKPMYV 141
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 27.4 bits (61), Expect = 8.6
Identities = 10/48 (20%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 83 KVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDE 130
++++++K R+ ++P +S K++ K +KS + + R E
Sbjct: 97 ELTTEKKARRPTRPTRAS----KERRLASKAQKSSVKAMRGKVRSGRE 140
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 27.9 bits (62), Expect = 8.9
Identities = 12/68 (17%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Query: 46 SSKKDKKDKDRDK-EKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKE 104
KK + + + ++ EK +S K+K + S + K+ ++ E
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPYETL 290
Query: 105 KKKEKKDK 112
E K+
Sbjct: 291 DDTEVKNN 298
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 28.1 bits (62), Expect = 9.4
Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 60 KEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEK--EKKKEKKDKKEKSH 117
K + + E + S K + E+ +K + K KK+ K K
Sbjct: 214 KHLKGQSNEAFQKQFSKWSKTLEAAKVDSVEKLFTKVHAEIRKNPERVKSTKKNDKPKRD 273
Query: 118 KHKDKDRERDKDEKKEQKESK 138
K + ++K++ ++K
Sbjct: 274 HKKFYPTKLTAAQRKDRVKTK 294
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal
transduction, nuclear transport, GTP hydrolysis, ground
state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3
PDB: 1k5g_B*
Length = 201
Score = 27.5 bits (60), Expect = 9.9
Identities = 17/101 (16%), Positives = 38/101 (37%), Gaps = 5/101 (4%)
Query: 14 AHPSPHKNKDKDSSAIPSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSA 73
N D + + +T + P + + ++ K K K ++ +++ +
Sbjct: 106 PMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEER 165
Query: 74 VSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKE 114
K+ + K E E+ S KE+ KE ++K+
Sbjct: 166 EKKAGSGKNDHAEKVAE-----KLEALSVKEETKEDAEEKQ 201
>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK,
UDP, N-acetylglucosamine, N- acetylgalactosamine,
UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas
aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*
Length = 352
Score = 28.0 bits (63), Expect = 9.9
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 17/64 (26%)
Query: 405 YSFTKAIGESVVEKY--LYKLPLAMVRPSIVVSTWKEPIVGWSNNLYGPGGAAAGAALGL 462
Y+ TK + E + + Y +R N++G GA +
Sbjct: 177 YAVTKYVNELYADVFSRCYGFSTIGLRYF---------------NVFGRRQDPNGAYAAV 221
Query: 463 IHTF 466
I +
Sbjct: 222 IPKW 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.309 0.125 0.353
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,331,294
Number of extensions: 483148
Number of successful extensions: 1955
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1683
Number of HSP's successfully gapped: 333
Length of query: 596
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 497
Effective length of database: 3,937,614
Effective search space: 1956994158
Effective search space used: 1956994158
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 60 (27.6 bits)