RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5825
(596 letters)
>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 361
Score = 46.7 bits (110), Expect = 5e-06
Identities = 35/193 (18%), Positives = 61/193 (31%), Gaps = 34/193 (17%)
Query: 266 RLKNEQADILQRKVHIISGDISQPSLGISSHDQQFIQHHIHVIIHAAASLRFDELIQD-- 323
L++ + + DI + + F Q+ ++H AA D I
Sbjct: 39 NLESLSDISESNRYNFEHADICDSA----EITRIFEQYQPDAVMHLAAESHVDRSITGPA 94
Query: 324 -AFTLNIQATRELLDLATRCSQLKAILHVSTLYTHSYREDIQEEFYPPLFSYEDLAHVMQ 382
NI T LL++A + + H D E Y L +++ + +
Sbjct: 95 AFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTD---EVYGDLPHPDEVENSVT 151
Query: 383 TTNQEELEILSSMLFGGIYNNSYSFTKAIGESVVEKY--LYKLPLAMVRPSIVVSTWKEP 440
E + ++ YS +KA + +V + Y LP + S
Sbjct: 152 LPLFTETTAYAP-------SSPYSASKASSDHLVRAWRRTYGLPTIVTNCS--------- 195
Query: 441 IVGWSNNLYGPGG 453
N YGP
Sbjct: 196 ------NNYGPYH 202
>d1sa0e_ a.137.10.1 (E:) Stathmin 4 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 138
Score = 42.9 bits (101), Expect = 1e-05
Identities = 17/95 (17%), Positives = 45/95 (47%)
Query: 44 SSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEK 103
++S ++D ++ ++K + +E+ K + K + E+E + +E+++
Sbjct: 32 FNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIEENNNFI 91
Query: 104 EKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESK 138
+ KEK +K +S+K + E+ ++K+
Sbjct: 92 KMAKEKLAQKMESNKENREAHLAAMLERLQEKDKH 126
Score = 36.4 bits (84), Expect = 0.003
Identities = 18/105 (17%), Positives = 43/105 (40%), Gaps = 1/105 (0%)
Query: 30 PSTSTSSSTSNPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEK 89
+ S P S ++ + K E+ ++ ++ E K +E E++ + +
Sbjct: 26 FDGVPEFNASLPRRRDPSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHEREVIQKAIE 85
Query: 90 ERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQ 134
E K + + +K E + ++H +R ++KD+ E+
Sbjct: 86 ENNNFI-KMAKEKLAQKMESNKENREAHLAAMLERLQEKDKHAEE 129
>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli
[TaxId: 562]}
Length = 357
Score = 38.2 bits (88), Expect = 0.002
Identities = 45/359 (12%), Positives = 87/359 (24%), Gaps = 73/359 (20%)
Query: 242 LLRSKKNKTVQERLAEQFKDELFDRLKNEQADILQRKVHIISGDISQPSLGISSHDQQFI 301
LL +R A F E D + + K H+ GD+S S + +
Sbjct: 21 LLEKGYEVHGIKRRASSFNTERVDHIYQD-PHTCNPKFHLHYGDLSDTS----NLTRILR 75
Query: 302 QHHIHVIIHAAASLRFDELIQD---AFTLNIQATRELLDLATR--CSQLKAILHVSTLYT 356
+ + + A + ++ T LL+ + ST
Sbjct: 76 EVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQAST--- 132
Query: 357 HSYREDIQEEFYPPLFSYEDLAHVMQTTNQEELEILSSMLFGGIYNNSYSFTKAIGESVV 416
E Y +E+ + F + Y+ K +
Sbjct: 133 --------SELYG---------------LVQEIPQKETTPFYPR--SPYAVAKLYAYWIT 167
Query: 417 EKY--LYKLPLAMVRPSIVVSTWKEPIVGWSNNLYGPGGAAAGAALGLIHTFYAKHDKKC 474
Y Y + N P +
Sbjct: 168 VNYRESYGMYACNGILF---------------NHESPRRGETFVTRKITRAIANIAQGLE 212
Query: 475 DLIPVDVATNMMLGVVWKTALDHGHVAPPASLVAPIPRTDPPVYNLSISSSYPITWLEYM 534
+ + NM W A D+ + + + P + ++ Y + M
Sbjct: 213 SCLYLG---NMDSLRDWGHAKDYVKMQWMM-----LQQEQPEDFVIATGVQYSVRQFVEM 264
Query: 535 NSVQAAGKCDEQYIASVLAIWTYTFCMEQNQFMYLLRVWFLHMIPGMIMDTVLRCLNKP 593
+ Q K + T E+ + + + PG ++ V +P
Sbjct: 265 AAAQLGIKL----------RFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRP 313
>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 347
Score = 35.0 bits (79), Expect = 0.025
Identities = 27/203 (13%), Positives = 53/203 (26%), Gaps = 33/203 (16%)
Query: 242 LLRSKKNKTVQERLAEQFKDELFDRLKNEQADILQRKVHIISGDISQPSLGISSHDQQFI 301
LL R + F + L ++ + + GD++ + + ++
Sbjct: 21 LLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP 80
Query: 302 QHHIHVIIHAAASLRFDELIQDAFTLNIQATRELLDLATRCSQLKA--ILHVSTLYTHSY 359
++ + + FD A + T LLD C + + ST
Sbjct: 81 TEIYNLGAQSHVKISFDLAEYTADV-DGVGTLRLLDAVKTCGLINSVKFYQAST------ 133
Query: 360 REDIQEEFYPPLFSYEDLAHVMQTTNQEELEILSSMLFGGIYNNSYSFTKAIGESVVEKY 419
E Y +E+ + F + Y K +V +
Sbjct: 134 -----SELYG---------------KVQEIPQKETTPFYPR--SPYGAAKLYAYWIVVNF 171
Query: 420 --LYKLPLAMVRPSIVVSTWKEP 440
Y L S +
Sbjct: 172 REAYNLFAVNGILFNHESPRRGA 194
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 32.4 bits (74), Expect = 0.11
Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 87 KEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDK 128
+ E ++ KE EK K KE+ +K K + D +++
Sbjct: 111 AQTEARKQMSKE---EKLKIKEENEKLLKEYGFCIMDNHKER 149
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 30.5 bits (69), Expect = 0.13
Identities = 15/81 (18%), Positives = 33/81 (40%)
Query: 58 KEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSH 117
++ E + K + V ++ + + S K+ +E+ K + +K + E +
Sbjct: 11 RDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETAL 70
Query: 118 KHKDKDRERDKDEKKEQKESK 138
K +DK K ++ Q K
Sbjct: 71 KGEDKAAIEAKMQELAQVSQK 91
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 32.0 bits (73), Expect = 0.15
Identities = 10/42 (23%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 87 KEKERKESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDK 128
+KE+K+ + EK++ + +++K E+ +K + D R++
Sbjct: 103 LQKEQKKQLTSQ---EKKQIRLEREKFEEDYKFCELDGRREQ 141
>d1zroa2 a.264.1.1 (A:283-596) Erythrocyte binding antigen region II
{Plasmodium falciparum [TaxId: 5833]}
Length = 314
Score = 31.6 bits (71), Expect = 0.28
Identities = 12/66 (18%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 50 DKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEK 109
KK ++ +K+ ++ ++ ++ + + S+ K K K+ E + ++ K++
Sbjct: 248 SKKKEEYNKQAKQYQEYQKGNNYKMYSEFKSI-KPEVYLKKYSEKCSNLNFEDEFKEELH 306
Query: 110 KDKKEK 115
D K K
Sbjct: 307 SDYKNK 312
>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptomyces venezuelae [TaxId: 54571]}
Length = 322
Score = 31.3 bits (70), Expect = 0.33
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 17/54 (31%)
Query: 402 NNSYSFTKAIGESVVEKY--LYKLPLAMVRPSIVVSTWKEPIVGWSNNLYGPGG 453
N+ Y+ +KA + V Y Y L + + R N YGP
Sbjct: 148 NSPYAASKAGSDLVARAYHRTYGLDVRITRCC---------------NNYGPYQ 186
>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 363
Score = 31.1 bits (69), Expect = 0.36
Identities = 17/176 (9%), Positives = 45/176 (25%), Gaps = 26/176 (14%)
Query: 264 FDRLKNEQADILQRKVHIISGDISQPSLGISSHDQQFIQHHIHVIIHAAASLRFDELIQD 323
D KNE D+ + + + H ++
Sbjct: 45 SDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTE--GVDHVFNLAADMGGMGFIQSNHSV 102
Query: 324 AFTLNIQATRELLDLATRCSQLKAILHVSTLYTHSYREDIQEEFYPPLFSYEDLAHVMQT 383
N + +++ A R + +K + S+ + + ++ S A
Sbjct: 103 IMYNNTMISFNMIE-AARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAE---- 157
Query: 384 TNQEELEILSSMLFGGIYNNSYSFTKAIGESVVEKY--LYKLPLAMVRPSIVVSTW 437
+++ K E + + Y + + + R + +
Sbjct: 158 -----------------PQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPF 196
>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB)
{Streptococcus suis, serotype 2 [TaxId: 1307]}
Length = 346
Score = 30.3 bits (67), Expect = 0.56
Identities = 25/175 (14%), Positives = 47/175 (26%), Gaps = 23/175 (13%)
Query: 268 KNEQADILQRKVHIISGDISQPSLGISSHDQQFIQHHIHVIIHAAASLRFDELIQDAFTL 327
K IL +V ++ GDI+ L + H H SL
Sbjct: 43 KANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYAAESHNDNSLNDPS---PFIHT 99
Query: 328 NIQATRELLDLATRCSQLKAILHVSTLYTHSYREDIQEEFYPPLFSYEDLAHVMQTTNQE 387
N T LL+ A + + +Y + ++
Sbjct: 100 NFIGTYTLLEAARKYDIRFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSS-- 157
Query: 388 ELEILSSMLFGGIYNNSYSFTKAIGESVVEKYL--YKLPLAMVRPSIVVSTWKEP 440
YS TKA + +V+ ++ + + + S ++
Sbjct: 158 ----------------PYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI 196
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS)
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 66
Score = 27.0 bits (60), Expect = 1.1
Identities = 9/62 (14%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 57 DKEKEKEKKDKEKDKSAVSSKEKEKDKVSSK---EKERKESKPKESSSEKEKKKEKKDKK 113
D E+ + +++K + ++ K R+++ + +E+ + KE ++
Sbjct: 1 DVEEWRRRQEKRLKEL-----LALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQA 55
Query: 114 EK 115
E+
Sbjct: 56 ER 57
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 101
Score = 27.5 bits (61), Expect = 1.5
Identities = 8/50 (16%), Positives = 22/50 (44%)
Query: 92 KESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSS 141
+ + + +E+++++ K +DR K+ +++S SS
Sbjct: 51 SQKEHYKKLAEEQQRQYKVHLDLWVKSLSPQDRAAYKEYISNKRKSGPSS 100
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides
thetaiotaomicron [TaxId: 818]}
Length = 154
Score = 28.2 bits (62), Expect = 1.7
Identities = 13/163 (7%), Positives = 37/163 (22%), Gaps = 31/163 (19%)
Query: 278 KVHIISGDISQPSLGISSHDQQFIQHHIHVIIHAAAS-------------LRFDELIQDA 324
++ I GD + P + VI H ++ +
Sbjct: 1 EILYIKGDATAPI-----------GSGVKVITHICNDIGGWGKGFVLALSKKWKMPEEAY 49
Query: 325 FTLNIQATRELLDLA--TRCSQLKAILHVSTLYTHSYREDIQEEFYPPLFSYEDLAHVMQ 382
L + ++ + Y+ + ++
Sbjct: 50 RQWYKSQEEFTLGAVQFVNVENKLYVANMIGQHGIYKDSKGLPP-----IRYDAVRQCLK 104
Query: 383 TTNQEELEILSSMLFGGIYNNSYSFTKAIGESVVEKYLYKLPL 425
+ +S+ I + E ++++ L +
Sbjct: 105 EVALFTIAHKASVHMPRIGCGLAGGKWELMEQIIKEELITKEI 147
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream
binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 108
Score = 27.6 bits (61), Expect = 1.8
Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 13/109 (11%)
Query: 42 TNSSSSKKDKKDKDRDKE---------KEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERK 92
+ SS KDK D K E K+ + ++ K+ S++
Sbjct: 3 SGSSGQLKDKFDGRPTKPPPNSYSLYCAELMANMKDVPSTERMVLCSQQWKLLSQK---- 58
Query: 93 ESKPKESSSEKEKKKEKKDKKEKSHKHKDKDRERDKDEKKEQKESKSSS 141
E +++KK + + +++++R E+K S SS
Sbjct: 59 EKDAYHKKCDQKKKDYEVELLRFLESLPEEEQQRVLGEEKMLNISGPSS 107
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 27.6 bits (61), Expect = 2.0
Identities = 9/90 (10%), Positives = 29/90 (32%)
Query: 58 KEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKKDKKEKSH 117
K+ + K + K + + S S++E++ + +
Sbjct: 11 KDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAHLSEVA 70
Query: 118 KHKDKDRERDKDEKKEQKESKSSSKIVSSS 147
+ D D + +++ +++ + S
Sbjct: 71 QGDDVDAIEQAIKNVDKQTQDFAARRMDQS 100
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 28.2 bits (62), Expect = 2.5
Identities = 10/91 (10%), Positives = 25/91 (27%)
Query: 40 NPTNSSSSKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKES 99
P ++ + D + + A + + + +
Sbjct: 158 RPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAK 217
Query: 100 SSEKEKKKEKKDKKEKSHKHKDKDRERDKDE 130
+ E K + EK + D+ R+R +
Sbjct: 218 LYDIEFKSIDEVDFEKLSRELDESRDRYRRR 248
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 28.1 bits (62), Expect = 3.0
Identities = 9/61 (14%), Positives = 20/61 (32%)
Query: 50 DKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEK 109
+K K D K K+ K + D + + KE+ + ++++
Sbjct: 229 TRKKKQWDVLSTKFSSVKKTQKIGTENIATAYDILKQELNGFKEATFENEINKRDNLYNH 288
Query: 110 K 110
Sbjct: 289 L 289
Score = 27.7 bits (61), Expect = 4.4
Identities = 15/95 (15%), Positives = 31/95 (32%), Gaps = 5/95 (5%)
Query: 51 KKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKEKK 110
+ K++ K EK + A+ D + + K+ + K
Sbjct: 188 ELPKEQGKLNEKCASKLYYNNMAICMLPLCHDAC---KSYDQWITRKKKQWDVLSTKFSS 244
Query: 111 DKKEKSH--KHKDKDRERDKDEKKEQKESKSSSKI 143
KK + ++ + K E KE+ ++I
Sbjct: 245 VKKTQKIGTENIATAYDILKQELNGFKEATFENEI 279
Score = 26.5 bits (58), Expect = 9.3
Identities = 8/89 (8%), Positives = 34/89 (38%), Gaps = 3/89 (3%)
Query: 47 SKKDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSK---EKERKESKPKESSSEK 103
+ K + + ++ K+K+ D +S+K K+ ++ + ++
Sbjct: 201 ASKLYYNNMAICMLPLCHDACKSYDQWITRKKKQWDVLSTKFSSVKKTQKIGTENIATAY 260
Query: 104 EKKKEKKDKKEKSHKHKDKDRERDKDEKK 132
+ K++ + +++ + ++ +
Sbjct: 261 DILKQELNGFKEATFENEINKRDNLYNHL 289
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 26.9 bits (59), Expect = 6.9
Identities = 5/93 (5%), Positives = 30/93 (32%), Gaps = 2/93 (2%)
Query: 49 KDKKDKDRDKEKEKEKKDKEKDKSAVSSKEKEKDKVSSKEKERKESKPKESSSEKEKKKE 108
+ + K ++ + + + + + R ++ + + + +
Sbjct: 174 QQAALHAQQDAVTKIADLQKAGATPDQMRAQIAQTLGPEAAARAAQMQQDDEAWQTRYQA 233
Query: 109 KKDKKEKSHKHKDKDRERDK--DEKKEQKESKS 139
++++ ++RD + ++Q +
Sbjct: 234 YAAERDRIAAQGLAPQDRDARIAQLRQQTFTAP 266
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.309 0.125 0.353
Gapped
Lambda K H
0.267 0.0552 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,030,025
Number of extensions: 92673
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 338
Number of HSP's successfully gapped: 55
Length of query: 596
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 506
Effective length of database: 1,171,896
Effective search space: 592979376
Effective search space used: 592979376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 56 (25.8 bits)