BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5827
(410 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3ZCK8|COA5_BOVIN Cytochrome c oxidase assembly factor 5 OS=Bos taurus GN=COA5 PE=3
SV=1
Length = 74
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 3/66 (4%)
Query: 345 SACAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAPQCEALKNTFFECKRSLLDNRTRF 404
ACAG + DL LCLL++DCV + K+PRQCL+EG C+ALK +FFECKRS+LD R+RF
Sbjct: 12 GACAGVKEDLGLCLLQSDCVLKEGKSPRQCLKEG---NCKALKYSFFECKRSMLDARSRF 68
Query: 405 RGHKGY 410
RG KGY
Sbjct: 69 RGRKGY 74
>sp|Q5HZG4|TAF3_MOUSE Transcription initiation factor TFIID subunit 3 OS=Mus musculus
GN=Taf3 PE=1 SV=2
Length = 932
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 254 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 305
Q+WICP C DDGS PMIGCD CD WYHW CVG++A PE WFCPKC+
Sbjct: 865 NQIWICPGCNKPDDGS-PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCAN 916
>sp|Q5VWG9|TAF3_HUMAN Transcription initiation factor TFIID subunit 3 OS=Homo sapiens
GN=TAF3 PE=1 SV=1
Length = 929
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 34/53 (64%), Positives = 38/53 (71%), Gaps = 2/53 (3%)
Query: 254 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV-AEPETSDWFCPKCSK 305
Q+WICP C DDGS PMIGCD CD WYHW CVG++ A PE WFCPKC+
Sbjct: 863 NQIWICPGCNKPDDGS-PMIGCDDCDDWYHWPCVGIMTAPPEEMQWFCPKCAN 914
>sp|Q28CA1|COA5_XENTR Cytochrome c oxidase assembly factor 5 OS=Xenopus tropicalis
GN=coa5 PE=3 SV=1
Length = 75
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%), Gaps = 3/68 (4%)
Query: 343 DKSACAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAPQCEALKNTFFECKRSLLDNRT 402
DK CAG + DLK CLL+TDCV + K+P++CL+EG C+AL+ TFFECKRS+LD R
Sbjct: 11 DKHPCAGVKEDLKSCLLQTDCVLQEGKSPKECLKEGY---CKALQVTFFECKRSILDTRA 67
Query: 403 RFRGHKGY 410
RFRG KGY
Sbjct: 68 RFRGRKGY 75
>sp|Q5RFJ0|COA5_PONAB Cytochrome c oxidase assembly factor 5 OS=Pongo abelii GN=Coa5 PE=3
SV=1
Length = 74
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/66 (62%), Positives = 48/66 (72%), Gaps = 3/66 (4%)
Query: 345 SACAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAPQCEALKNTFFECKRSLLDNRTRF 404
AC G + DL CLLE+DCV + K+PRQCL+EG C +LK FFECKRS+LDNR RF
Sbjct: 12 GACGGLKEDLGACLLESDCVVQEGKSPRQCLKEGY---CNSLKYAFFECKRSVLDNRARF 68
Query: 405 RGHKGY 410
RG KGY
Sbjct: 69 RGRKGY 74
>sp|Q5EAW9|TAF3_XENLA Transcription initiation factor TFIID subunit 3 OS=Xenopus laevis
GN=taf3 PE=2 SV=1
Length = 845
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/51 (64%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 254 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL-VAEPETSDWFCPKC 303
Q+WICP C DDGS PMIGCD CD WYHW CVG+ A PE WFC KC
Sbjct: 779 NQIWICPGCNKPDDGS-PMIGCDQCDDWYHWPCVGINAAPPEDEQWFCTKC 828
>sp|A1L3N6|COA5_XENLA Cytochrome c oxidase assembly factor 5 OS=Xenopus laevis GN=coa5
PE=3 SV=1
Length = 75
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 50/64 (78%), Gaps = 3/64 (4%)
Query: 347 CAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAPQCEALKNTFFECKRSLLDNRTRFRG 406
C G + DLK CLL++DCV + K+P++CL+EG C+AL+ TFFECKRS+LDNR RFRG
Sbjct: 15 CGGVKEDLKNCLLQSDCVLQEGKSPKECLKEG---YCKALQVTFFECKRSILDNRARFRG 71
Query: 407 HKGY 410
KGY
Sbjct: 72 RKGY 75
>sp|Q5F489|TAF3_CHICK Transcription initiation factor TFIID subunit 3 OS=Gallus gallus
GN=TAF3 PE=2 SV=1
Length = 930
Score = 82.4 bits (202), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 254 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 305
Q+W CP C DDGS PMIGCD CD WYHW CVG+ A PE WFC KC+
Sbjct: 864 NQIWFCPGCNKPDDGS-PMIGCDDCDDWYHWPCVGITAAPPEEMQWFCSKCAN 915
>sp|Q86WW8|COA5_HUMAN Cytochrome c oxidase assembly factor 5 OS=Homo sapiens GN=COA5 PE=1
SV=1
Length = 74
Score = 79.0 bits (193), Expect = 7e-14, Method: Composition-based stats.
Identities = 41/65 (63%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 346 ACAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAPQCEALKNTFFECKRSLLDNRTRFR 405
ACAG + DL CLL++DCV + K+PRQCL+EG C +LK FFECKRS+LDNR RFR
Sbjct: 13 ACAGLKEDLGACLLQSDCVVQEGKSPRQCLKEGY---CNSLKYAFFECKRSVLDNRARFR 69
Query: 406 GHKGY 410
G KGY
Sbjct: 70 GRKGY 74
>sp|Q99M07|COA5_MOUSE Cytochrome c oxidase assembly factor 5 OS=Mus musculus GN=Coa5 PE=2
SV=1
Length = 74
Score = 76.6 bits (187), Expect = 3e-13, Method: Composition-based stats.
Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 3/65 (4%)
Query: 346 ACAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAPQCEALKNTFFECKRSLLDNRTRFR 405
ACAG + DL CLL++ CV + K+PRQCL+EG C AL+ +FFECKRS+LD R+RFR
Sbjct: 13 ACAGVKEDLGACLLQSACVLQEGKSPRQCLKEG---NCRALQYSFFECKRSMLDARSRFR 69
Query: 406 GHKGY 410
G KGY
Sbjct: 70 GRKGY 74
>sp|Q0P451|COA5_DANRE Cytochrome c oxidase assembly factor 5 OS=Danio rerio GN=coa5 PE=3
SV=1
Length = 75
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 3/67 (4%)
Query: 343 DKSACAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAPQCEALKNTFFECKRSLLDNRT 402
D AC+G R D K CLL+ DCV + K P +CL+EG C +++ FFECKRS+LD R+
Sbjct: 11 DGRACSGLREDFKACLLQHDCVVKEGKKPSECLKEG---HCRSMQVAFFECKRSMLDTRS 67
Query: 403 RFRGHKG 409
RFRG KG
Sbjct: 68 RFRGRKG 74
>sp|F1QBY1|NIPLB_DANRE Nipped-B-like protein B OS=Danio rerio GN=nipblb PE=2 SV=1
Length = 2876
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 80/111 (72%), Gaps = 3/111 (2%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
K+ K ++KE++K + K+ KD K +EKD++K+++K++EK + +E EK EK++ +E E
Sbjct: 740 KEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKGREKDQDKELE 799
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEK-KSKDKDKKLKK--EKLKKKKKEKER 198
++D++K +EK R++++D E EK + KD+DK+L+K EK + K +EK+R
Sbjct: 800 KGREKDRDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDKVREKDR 850
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 84/131 (64%), Gaps = 5/131 (3%)
Query: 73 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKG 132
TS E +DK +++K K EK + K+ + +DK+++K++EKD+EK DKE EKG
Sbjct: 670 TSKSSRVEHNRDKEQEQEKVGDKGLEKGREKELEKGRDKERVKDQEKDQEKGRDKEVEKG 729
Query: 133 KKEE--KEKKEEKEKKEEKEFKMKEDK--EKPVEKIRKEEKDSEKEK-KSKDKDKKLKKE 187
+ +E K++ +E+EK +KE DK K +EK R++++D E EK + K++DK+L+K
Sbjct: 730 RYKERVKDRVKEQEKVRDKEQVKGRDKKRSKDLEKCREKDQDKELEKDREKNQDKELEKG 789
Query: 188 KLKKKKKEKER 198
+ K + KE E+
Sbjct: 790 REKDQDKELEK 800
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 71/103 (68%), Gaps = 3/103 (2%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E++K + +DK+ K +EK++ K ++ KD+DK+++K++DK ++ D++K + K +K +
Sbjct: 821 ELEKGREKDQDKELEKGQEKDRDKVRE--KDRDKVRDKDRDKVREKDRDKVREKDRDKLR 878
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
++++EK E++ +K++ E+++ EKD EKE+ KD+DK
Sbjct: 879 EKDREKIRERDRDKGREKDRDKEQVKTREKDQEKERL-KDRDK 920
Score = 41.6 bits (96), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 82/130 (63%), Gaps = 11/130 (8%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E++K + +DK+ K +EK++ K+ + ++KD+ K EK +EK DKE EKG++++++K
Sbjct: 785 ELEKGREKDQDKELEKGREKDRDKEMEKAREKDQDKELEKGREKDQDKELEKGQEKDRDK 844
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK-----------KSKDKDKKLKKEK 188
EK++ + ++ + +EK +K+R++++D +EK K ++KD+ ++ K
Sbjct: 845 VREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVK 904
Query: 189 LKKKKKEKER 198
++K +EKER
Sbjct: 905 TREKDQEKER 914
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 50/68 (73%), Gaps = 4/68 (5%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
+DK +KD+ ++K+++K++ +KD++KI+ +++DK ++ D++KE+ K EK++++E
Sbjct: 858 RDKVREKDRDKVREKDRDKLR----EKDREKIRERDRDKGREKDRDKEQVKTREKDQEKE 913
Query: 143 KEKKEEKE 150
+ K +KE
Sbjct: 914 RLKDRDKE 921
Score = 32.3 bits (72), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 63/99 (63%), Gaps = 10/99 (10%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKI------KNKEKDKEKKIDKEKEKGKKEE 136
+DK ++K ++ + K +EK + K KD+DK+ K +EKD++K +K++EK ++ +
Sbjct: 830 QDKELEKGQEKDRDKVREKDRDKVRDKDRDKVREKDRDKVREKDRDKLREKDREKIRERD 889
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
++K EK++ +E+ + +EK EK R +++D E+EK
Sbjct: 890 RDKGREKDRDKEQ----VKTREKDQEKERLKDRDKEREK 924
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 63/93 (67%), Gaps = 12/93 (12%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKK-KDK-----KDKDKIKNKEKDKEKKI----DKEKEKG 132
+DK +KD+ ++K++EKI+++ +DK +DK+++K +EKD+EK+ DKE+EK
Sbjct: 866 RDKVREKDRDKLREKDREKIRERDRDKGREKDRDKEQVKTREKDQEKERLKDRDKEREKV 925
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIR 165
+ + +++ ++EKK KE + EDK+ P ++ R
Sbjct: 926 RDKGRDRDRDQEKKRNKE--LTEDKQAPEQRSR 956
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 51.6 bits (122), Expect = 1e-05, Method: Composition-based stats.
Identities = 29/117 (24%), Positives = 83/117 (70%), Gaps = 2/117 (1%)
Query: 86 SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK 145
++K+ ++ +KE+E ++++++ +++K + +K++E K +E+E+ +KEE K++E+E+
Sbjct: 2738 ALKRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELK-RQEQERLQKEEALKRQEQER 2796
Query: 146 KEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
+++E ++K +++ +E+ ++E+ E+E K +++++ K+E LK++++E+ + E
Sbjct: 2797 LQKEE-ELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEE 2852
Score = 47.0 bits (110), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/149 (25%), Positives = 89/149 (59%), Gaps = 11/149 (7%)
Query: 80 EIKKDKSIKKDKKTH-------KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE-K 131
+++K++ +K+ ++ K++E+E+++K+++ K +++ + E++K++++ KE+E K
Sbjct: 2768 QLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQ-ERLEREKQEQLQKEEELK 2826
Query: 132 GKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
+++E+ +KEE K++E+E KE++ K E+ R E K E ++ + KL+ + +K
Sbjct: 2827 RQEQERLQKEEALKRQEQERLQKEEELKRQEQERLERKKIELAEREQHIKSKLESDMVKI 2886
Query: 192 KKKEKERSSHEKEVIPKLTFKFGTDMEEK 220
K E + + E+I K +E+K
Sbjct: 2887 IK--DELTKEKDEIIKNKDIKLRHSLEQK 2913
Score = 46.2 bits (108), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/151 (23%), Positives = 90/151 (59%), Gaps = 7/151 (4%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
++K++ +K+ ++ ++EK++ +K+++ + + + +K++ K +++ K+EE +++
Sbjct: 2747 LQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQ 2806
Query: 141 EEKEKKEEKEFKMKEDKE---KPVEKIRKEEKDSEKEKKSKDKDKKLKK---EKLKKKKK 194
E++ + EK+ ++++++E + E+++KEE +E++ K+++LK+ E+L++KK
Sbjct: 2807 EQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLERKKI 2866
Query: 195 E-KERSSHEKEVIPKLTFKFGTDMEEKTKRE 224
E ER H K + K D K K E
Sbjct: 2867 ELAEREQHIKSKLESDMVKIIKDELTKEKDE 2897
Score = 41.6 bits (96), Expect = 0.012, Method: Composition-based stats.
Identities = 34/131 (25%), Positives = 80/131 (61%), Gaps = 6/131 (4%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED-KEKPVEKIRK 166
K+ + + KE++ +++ + E+ K+E+ +K+EE +++E++ + +E K + E+++K
Sbjct: 2740 KRQEQERLQKEEELKRQEQERLEREKQEQLQKEEELKRQEQERLQKEEALKRQEQERLQK 2799
Query: 167 EE--KDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRE 224
EE K E+E+ ++K ++L+KE+ + K++E+ER E+ + K + EE+ KR+
Sbjct: 2800 EEELKRQEQERLEREKQEQLQKEE-ELKRQEQERLQKEEAL--KRQEQERLQKEEELKRQ 2856
Query: 225 SSPKIVIKPVK 235
++ K ++
Sbjct: 2857 EQERLERKKIE 2867
>sp|Q8SX83|SPEN_DROME Protein split ends OS=Drosophila melanogaster GN=spen PE=1 SV=2
Length = 5560
Score = 40.8 bits (94), Expect = 0.022, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 56/94 (59%), Gaps = 4/94 (4%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK-KEE 148
DK+ +K+ +EK ++K+++++D N+EK+ K +EKE +KE++EK+ +EK + E
Sbjct: 1997 DKEQKEKEIREKDLREKEQRERD---NREKELRDKDLREKEMREKEQREKELHREKDQRE 2053
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
+E + KE + ++ ++ +E S K K
Sbjct: 2054 REHREKEQSRRAMDVEQEGRGGRMRELSSYQKSK 2087
Score = 36.2 bits (82), Expect = 0.47, Method: Composition-based stats.
Identities = 22/88 (25%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
++K+KE + +EK ++E +++E K+ +E +M+E KE+ +++ +E+ E+E +
Sbjct: 1999 EQKEKEIREKDLREKEQRERDNREKELRDKDLREKEMRE-KEQREKELHREKDQREREHR 2057
Query: 177 SKDKDKK-LKKEKLKKKKKEKERSSHEK 203
K++ ++ + E+ + + +E SS++K
Sbjct: 2058 EKEQSRRAMDVEQEGRGGRMRELSSYQK 2085
Score = 33.1 bits (74), Expect = 4.2, Method: Composition-based stats.
Identities = 20/80 (25%), Positives = 54/80 (67%), Gaps = 6/80 (7%)
Query: 82 KKDKSIK-KDKKTHKKKEKEKIKKK-KDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+K+K I+ KD + +++E++ +K+ +DK ++K +++ +EK++ +EK++ ++E +EK
Sbjct: 2000 QKEKEIREKDLREKEQRERDNREKELRDKDLREKEMREKEQREKELHREKDQREREHREK 2059
Query: 140 KEEKE----KKEEKEFKMKE 155
++ + ++E + +M+E
Sbjct: 2060 EQSRRAMDVEQEGRGGRMRE 2079
>sp|Q3UXZ9|KDM5A_MOUSE Lysine-specific demethylase 5A OS=Mus musculus GN=Kdm5a PE=1 SV=2
Length = 1690
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPET--SDWFCPKCSKVDEGSRKE 313
+++C CG + + ++ CDGCD YH C+ L P+ DW CPKC V E K
Sbjct: 293 LYVCMFCG-RGNNEDKLLLCDGCDDSYHTFCL-LPPLPDVPKGDWRCPKC--VAEECNKP 348
Query: 314 KKKRGRKKKTHQDIIMS 330
++ G ++ + + S
Sbjct: 349 REAFGFEQAVREYTLQS 365
>sp|P29375|KDM5A_HUMAN Lysine-specific demethylase 5A OS=Homo sapiens GN=KDM5A PE=1 SV=3
Length = 1690
Score = 37.0 bits (84), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPET--SDWFCPKCSKVDEGSRKE 313
+++C CG + + ++ CDGCD YH C+ + P+ DW CPKC V E K
Sbjct: 293 LYVCMFCG-RGNNEDKLLLCDGCDDSYHTFCL-IPPLPDVPKGDWRCPKC--VAEECSKP 348
Query: 314 KKKRGRKKKTHQDIIMS 330
++ G ++ + + S
Sbjct: 349 REAFGFEQAVREYTLQS 365
>sp|C0H5F4|RBP2B_PLAF7 Reticulocyte binding protein 2 homolog b OS=Plasmodium falciparum
(isolate 3D7) GN=Rh2b PE=3 SV=1
Length = 3179
Score = 34.7 bits (78), Expect = 1.2, Method: Composition-based stats.
Identities = 23/99 (23%), Positives = 69/99 (69%), Gaps = 4/99 (4%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
++K+ +++++E++KK+ KK + + + +++ +E +E+E+ +KEE+ K++E+E+ E
Sbjct: 2628 QEKERLEREKQEQLKKEALKKQEQERQEQQQKEEALKRQEQERLQKEEELKRQEQERLER 2687
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
+ K+++ + E++RK+E++ ++++ ++ +++ K E
Sbjct: 2688 E----KQEQLQKEEELRKKEQEKQQQRNIQELEEQKKPE 2722
Score = 33.5 bits (75), Expect = 3.4, Method: Composition-based stats.
Identities = 24/98 (24%), Positives = 62/98 (63%), Gaps = 5/98 (5%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
+EKE+++++K ++ K + K++ + ++ +++E K++E+E+ +++E E K +E
Sbjct: 2628 QEKERLEREKQEQLKKEALKKQEQERQEQQQKEEALKRQEQERLQKEE-----ELKRQEQ 2682
Query: 157 KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
+ EK + +K+ E KK ++K ++ ++L+++KK
Sbjct: 2683 ERLEREKQEQLQKEEELRKKEQEKQQQRNIQELEEQKK 2720
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 175,261,720
Number of Sequences: 539616
Number of extensions: 9332216
Number of successful extensions: 421899
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5763
Number of HSP's successfully gapped in prelim test: 5844
Number of HSP's that attempted gapping in prelim test: 103023
Number of HSP's gapped (non-prelim): 104458
length of query: 410
length of database: 191,569,459
effective HSP length: 120
effective length of query: 290
effective length of database: 126,815,539
effective search space: 36776506310
effective search space used: 36776506310
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)