Query psy5827
Match_columns 410
No_of_seqs 319 out of 1337
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 18:57:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5827.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5827hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10203 Pet191_N: Cytochrome 99.9 7.8E-27 1.7E-31 185.1 5.5 64 344-407 2-68 (68)
2 KOG4114|consensus 99.9 1.4E-26 3.1E-31 182.0 3.1 67 344-410 2-72 (73)
3 KOG1973|consensus 99.1 3.8E-11 8.3E-16 118.1 3.6 55 249-307 212-269 (274)
4 COG5034 TNG2 Chromatin remodel 98.9 1.2E-09 2.6E-14 105.9 4.2 49 253-305 218-269 (271)
5 PF00628 PHD: PHD-finger; Int 98.9 2.5E-10 5.4E-15 84.3 -0.7 46 258-304 1-49 (51)
6 smart00249 PHD PHD zinc finger 98.8 7.2E-09 1.6E-13 73.2 3.8 45 258-303 1-47 (47)
7 KOG0825|consensus 98.2 3.9E-07 8.4E-12 99.4 2.1 52 254-306 213-266 (1134)
8 KOG1244|consensus 98.1 7.8E-07 1.7E-11 87.5 1.8 48 257-305 282-330 (336)
9 KOG4299|consensus 97.9 4E-06 8.8E-11 89.9 2.2 48 257-305 254-304 (613)
10 KOG1512|consensus 97.7 1.6E-05 3.6E-10 78.8 1.8 47 258-306 316-363 (381)
11 KOG4323|consensus 97.7 1.8E-05 3.9E-10 83.1 1.7 49 256-306 171-224 (464)
12 KOG1844|consensus 97.4 0.00025 5.3E-09 74.7 6.7 56 254-311 84-140 (508)
13 KOG0955|consensus 97.3 0.00016 3.4E-09 82.6 3.9 53 255-308 218-271 (1051)
14 KOG0954|consensus 97.1 0.00017 3.6E-09 79.0 1.6 50 255-305 270-320 (893)
15 PF13831 PHD_2: PHD-finger; PD 97.1 6.5E-05 1.4E-09 53.0 -1.2 34 271-304 3-36 (36)
16 KOG1245|consensus 96.8 0.00019 4.2E-09 84.3 -1.2 52 256-308 1108-1160(1404)
17 KOG0383|consensus 96.8 0.00063 1.4E-08 75.0 2.2 50 255-308 46-96 (696)
18 COG5141 PHD zinc finger-contai 96.6 0.00081 1.8E-08 71.1 1.2 49 257-306 194-243 (669)
19 KOG1632|consensus 96.5 0.0018 4E-08 66.2 3.4 51 257-308 61-115 (345)
20 KOG0957|consensus 96.5 0.008 1.7E-07 64.0 8.0 49 257-306 545-598 (707)
21 KOG0956|consensus 96.3 0.0015 3.3E-08 71.4 1.5 48 259-307 8-58 (900)
22 PTZ00266 NIMA-related protein 96.1 0.14 3E-06 59.3 15.4 7 1-7 292-298 (1021)
23 cd04718 BAH_plant_2 BAH, or Br 95.6 0.0071 1.5E-07 55.3 2.3 28 281-308 1-29 (148)
24 KOG4364|consensus 95.5 0.094 2E-06 57.7 10.4 19 350-368 610-628 (811)
25 KOG0957|consensus 95.4 0.01 2.3E-07 63.1 2.8 47 258-305 121-178 (707)
26 KOG1632|consensus 94.9 0.0032 6.9E-08 64.5 -2.4 57 252-308 235-297 (345)
27 KOG4443|consensus 94.9 0.012 2.6E-07 64.3 1.6 49 257-306 69-118 (694)
28 PF07227 DUF1423: Protein of u 94.4 0.032 6.9E-07 58.9 3.3 50 257-306 129-192 (446)
29 KOG4364|consensus 93.3 0.85 1.8E-05 50.5 11.5 14 345-358 615-628 (811)
30 KOG1144|consensus 92.0 0.58 1.3E-05 52.7 8.4 6 371-376 491-496 (1064)
31 PF15446 zf-PHD-like: PHD/FYVE 89.9 0.21 4.6E-06 46.8 2.3 48 258-306 1-60 (175)
32 KOG1144|consensus 88.8 1.5 3.3E-05 49.5 8.2 14 91-104 157-170 (1064)
33 KOG0163|consensus 88.2 2.8 6.1E-05 47.4 9.7 13 129-141 930-942 (1259)
34 PF07649 C1_3: C1-like domain; 87.9 0.2 4.3E-06 33.5 0.5 29 258-287 2-30 (30)
35 KOG4443|consensus 86.4 0.14 3.1E-06 56.3 -1.3 48 257-304 146-200 (694)
36 KOG2891|consensus 85.6 7.4 0.00016 39.6 10.3 16 178-193 396-411 (445)
37 PF07496 zf-CW: CW-type Zinc F 83.3 0.48 1E-05 35.5 0.7 32 271-303 2-35 (50)
38 PF14446 Prok-RING_1: Prokaryo 81.8 0.79 1.7E-05 35.4 1.4 31 257-288 6-37 (54)
39 KOG1473|consensus 81.0 0.89 1.9E-05 53.0 2.0 45 257-305 345-390 (1414)
40 KOG0163|consensus 79.5 18 0.00038 41.5 11.1 7 194-200 1003-1009(1259)
41 KOG2412|consensus 78.4 9 0.0002 41.9 8.3 25 127-151 204-228 (591)
42 KOG2752|consensus 77.7 1.1 2.3E-05 45.8 1.2 31 257-288 129-165 (345)
43 PF13832 zf-HC5HC2H_2: PHD-zin 77.0 1.3 2.8E-05 37.4 1.4 32 255-289 54-87 (110)
44 PF11793 FANCL_C: FANCL C-term 75.7 2.6 5.6E-05 33.6 2.7 49 258-306 4-64 (70)
45 PF05262 Borrelia_P83: Borreli 74.7 37 0.0008 36.9 11.8 9 61-69 156-164 (489)
46 KOG4299|consensus 73.6 3 6.6E-05 45.9 3.4 51 252-306 43-95 (613)
47 KOG1512|consensus 73.2 1 2.2E-05 45.6 -0.2 49 257-305 259-316 (381)
48 PF13901 DUF4206: Domain of un 71.0 3.1 6.8E-05 39.6 2.5 41 257-306 153-198 (202)
49 KOG2891|consensus 71.0 27 0.00059 35.7 9.1 26 154-179 350-375 (445)
50 PF05262 Borrelia_P83: Borreli 69.8 65 0.0014 35.1 12.3 25 60-84 151-175 (489)
51 PF10367 Vps39_2: Vacuolar sor 68.7 3 6.4E-05 34.4 1.6 29 258-288 80-108 (109)
52 KOG1473|consensus 68.7 1.1 2.5E-05 52.1 -1.1 55 257-315 429-488 (1414)
53 KOG2626|consensus 68.4 6.7 0.00014 42.7 4.5 52 256-308 20-78 (544)
54 PF07946 DUF1682: Protein of u 68.2 23 0.00049 36.0 8.1 18 156-173 300-317 (321)
55 PF13639 zf-RING_2: Ring finge 64.5 0.77 1.7E-05 32.7 -2.4 43 258-304 2-44 (44)
56 KOG3054|consensus 64.1 46 0.001 33.4 8.9 11 75-85 81-91 (299)
57 PF13771 zf-HC5HC2H: PHD-like 63.4 3.8 8.2E-05 33.2 1.2 31 257-290 37-69 (90)
58 KOG1246|consensus 62.3 13 0.00028 42.8 5.7 52 255-308 154-206 (904)
59 PF03107 C1_2: C1 domain; Int 58.0 8.4 0.00018 25.8 2.0 29 258-287 2-30 (30)
60 COG5415 Predicted integral mem 56.2 48 0.001 32.6 7.4 33 272-307 192-224 (251)
61 PF12861 zf-Apc11: Anaphase-pr 50.9 7.2 0.00016 32.8 0.9 46 259-306 35-80 (85)
62 COG1773 Rubredoxin [Energy pro 48.9 12 0.00027 29.1 1.8 41 257-305 4-44 (55)
63 TIGR02794 tolA_full TolA prote 47.9 2.8E+02 0.0061 28.8 12.1 11 347-357 312-322 (346)
64 KOG1829|consensus 45.9 5.4 0.00012 44.0 -0.8 43 257-306 512-559 (580)
65 PF00130 C1_1: Phorbol esters/ 45.8 16 0.00035 26.7 2.0 36 255-290 10-46 (53)
66 PF13341 RAG2_PHD: RAG2 PHD do 45.7 8.1 0.00017 31.6 0.4 50 254-303 2-68 (78)
67 KOG3612|consensus 43.9 24 0.00052 38.7 3.7 49 253-305 57-107 (588)
68 smart00109 C1 Protein kinase C 42.4 12 0.00025 26.4 0.8 34 256-289 11-44 (49)
69 KOG1244|consensus 42.3 8.2 0.00018 39.1 -0.0 51 255-306 223-284 (336)
70 KOG4661|consensus 41.9 1.4E+02 0.003 33.5 8.9 13 67-79 552-564 (940)
71 KOG2002|consensus 40.3 94 0.002 36.5 7.7 11 124-134 846-856 (1018)
72 cd00029 C1 Protein kinase C co 40.2 15 0.00032 26.1 1.0 34 256-289 11-45 (50)
73 PF08746 zf-RING-like: RING-li 39.0 13 0.00029 27.0 0.7 41 259-303 1-43 (43)
74 KOG3277|consensus 38.3 15 0.00032 34.3 1.0 28 256-284 79-115 (165)
75 PF10497 zf-4CXXC_R1: Zinc-fin 37.6 23 0.0005 30.6 2.0 47 257-305 8-69 (105)
76 KOG1952|consensus 37.4 17 0.00038 41.7 1.5 53 256-308 191-247 (950)
77 cd00350 rubredoxin_like Rubred 37.3 19 0.00041 24.6 1.2 10 296-305 16-25 (33)
78 PF04216 FdhE: Protein involve 37.3 15 0.00033 36.5 0.9 28 256-283 172-208 (290)
79 KOG3053|consensus 37.0 15 0.00033 36.9 0.9 50 257-306 21-80 (293)
80 PRK14559 putative protein seri 35.6 29 0.00063 38.9 2.9 49 258-308 3-52 (645)
81 PF12773 DZR: Double zinc ribb 35.1 33 0.00071 24.9 2.2 8 258-265 14-21 (50)
82 PF00301 Rubredoxin: Rubredoxi 34.8 26 0.00056 26.3 1.6 12 295-306 32-43 (47)
83 PF13922 PHD_3: PHD domain of 34.6 10 0.00022 30.7 -0.6 28 257-290 34-61 (69)
84 PF15346 ARGLU: Arginine and g 34.4 3.8E+02 0.0083 24.9 13.3 37 124-160 55-91 (149)
85 PF14569 zf-UDP: Zinc-binding 33.4 8.9 0.00019 31.9 -1.1 47 257-306 10-60 (80)
86 PRK03564 formate dehydrogenase 32.4 35 0.00075 35.0 2.6 29 256-284 187-224 (309)
87 KOG1080|consensus 32.3 36 0.00079 40.1 3.0 50 257-306 574-624 (1005)
88 PF06747 CHCH: CHCH domain; I 31.8 27 0.00058 23.6 1.2 25 371-395 8-34 (35)
89 PLN02400 cellulose synthase 31.2 34 0.00073 40.5 2.5 46 258-306 38-87 (1085)
90 PLN02436 cellulose synthase A 31.1 32 0.00068 40.7 2.3 46 258-306 38-87 (1094)
91 TIGR01562 FdhE formate dehydro 30.9 44 0.00095 34.2 3.0 39 256-305 184-232 (305)
92 cd00730 rubredoxin Rubredoxin; 30.7 35 0.00075 25.9 1.7 12 295-306 32-43 (50)
93 KOG2041|consensus 30.7 43 0.00093 38.4 3.1 47 257-306 1118-1165(1189)
94 PF05180 zf-DNL: DNL zinc fing 29.8 13 0.00028 29.9 -0.7 25 257-281 5-38 (66)
95 PF12678 zf-rbx1: RING-H2 zinc 29.6 23 0.00049 28.3 0.6 44 258-304 21-73 (73)
96 COG3064 TolA Membrane protein 29.4 4.4E+02 0.0095 27.7 9.7 9 75-83 49-57 (387)
97 PF09416 UPF1_Zn_bind: RNA hel 29.2 26 0.00057 32.5 1.0 24 259-284 3-26 (152)
98 KOG1705|consensus 28.4 28 0.0006 30.0 0.9 51 258-308 29-80 (110)
99 PLN03086 PRLI-interacting fact 28.1 2.2E+02 0.0047 31.8 7.9 10 355-364 243-252 (567)
100 KOG3634|consensus 27.3 3.1E+02 0.0066 28.8 8.2 6 39-44 10-15 (361)
101 PLN02638 cellulose synthase A 27.2 36 0.00078 40.3 1.9 46 258-306 19-68 (1079)
102 KOG2689|consensus 27.0 2.6E+02 0.0056 28.6 7.5 6 278-283 249-254 (290)
103 PF08991 DUF1903: Domain of un 26.1 57 0.0012 26.2 2.3 32 371-402 11-44 (67)
104 TIGR00311 aIF-2beta translatio 26.0 42 0.00091 30.3 1.7 25 257-281 98-127 (133)
105 PHA02862 5L protein; Provision 25.7 18 0.0004 33.4 -0.6 54 258-312 4-57 (156)
106 PRK03988 translation initiatio 25.0 45 0.00098 30.3 1.8 27 256-282 102-133 (138)
107 PLN02915 cellulose synthase A 24.7 44 0.00096 39.4 2.0 47 257-306 16-66 (1044)
108 cd00162 RING RING-finger (Real 24.5 23 0.0005 23.6 -0.2 42 259-305 2-43 (45)
109 KOG4628|consensus 23.8 54 0.0012 34.3 2.2 47 257-306 230-276 (348)
110 KOG2144|consensus 23.5 49 0.0011 34.1 1.8 32 62-93 210-244 (360)
111 PF13240 zinc_ribbon_2: zinc-r 23.1 48 0.001 21.2 1.1 21 258-280 1-21 (23)
112 PLN02189 cellulose synthase 22.6 54 0.0012 38.8 2.2 46 258-306 36-85 (1040)
113 PRK11595 DNA utilization prote 22.5 36 0.00078 32.6 0.6 26 257-283 6-31 (227)
114 PF11781 RRN7: RNA polymerase 22.4 45 0.00098 23.5 1.0 10 295-304 23-32 (36)
115 PRK05452 anaerobic nitric oxid 22.0 62 0.0013 34.7 2.4 40 255-306 424-467 (479)
116 PRK11788 tetratricopeptide rep 21.9 64 0.0014 31.9 2.3 25 256-282 354-378 (389)
117 smart00744 RINGv The RING-vari 21.2 39 0.00084 25.1 0.5 44 259-303 2-48 (49)
118 PF14205 Cys_rich_KTR: Cystein 21.0 77 0.0017 24.8 2.0 14 293-306 24-37 (55)
119 KOG4218|consensus 20.9 43 0.00093 35.2 0.9 27 257-283 16-43 (475)
120 PHA00626 hypothetical protein 20.8 85 0.0018 24.8 2.3 31 258-306 2-32 (59)
121 COG4499 Predicted membrane pro 20.7 69 0.0015 34.1 2.3 39 55-93 339-377 (434)
122 PLN02195 cellulose synthase A 20.6 67 0.0015 37.8 2.4 47 257-306 7-57 (977)
No 1
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=99.93 E-value=7.8e-27 Score=185.14 Aligned_cols=64 Identities=47% Similarity=1.061 Sum_probs=62.1
Q ss_pred chhhhhHHHHHHHHHhcCcccccCCCChhhhhcCC--Ccc-cHHHHHhHHHHhhcCCcCCcccccCC
Q psy5827 344 KSACAGSRADLKLCLLETDCVQVDRKTPRQCLREG--LAP-QCEALKNTFFECKRSLLDNRTRFRGH 407 (410)
Q Consensus 344 ~ssCa~~r~aL~~Cl~~S~Cv~~~~~t~~eCL~~~--~lp-eC~~l~~~~~eCKRg~lD~r~RfrGn 407 (410)
++||++++.+|+.||++||||+++++||++||+++ ++| +|++|+++||+|||||||||+|||||
T Consensus 2 ~~sC~~~~~~L~~Cl~~SdCv~~~~~t~~~Cl~~~~~~~p~eC~~lr~~f~eCKrg~lDmr~RfRGn 68 (68)
T PF10203_consen 2 SKSCKGIREALAECLQESDCVKKEKRTPKDCLKDPSDELPEECQQLRKAFFECKRGMLDMRKRFRGN 68 (68)
T ss_pred CchHHHHHHHHHHHHhhChhhccCCCCHHHHHcCCCCcCCHHHHHHHHHHHHHhcccccccccccCc
Confidence 57999999999999999999999999999999976 899 99999999999999999999999998
No 2
>KOG4114|consensus
Probab=99.92 E-value=1.4e-26 Score=182.01 Aligned_cols=67 Identities=52% Similarity=1.045 Sum_probs=64.3
Q ss_pred chhhhhHHHHHHHHHhcCcccccCCCChhhhhcCCC---cc-cHHHHHhHHHHhhcCCcCCcccccCCCCC
Q psy5827 344 KSACAGSRADLKLCLLETDCVQVDRKTPRQCLREGL---AP-QCEALKNTFFECKRSLLDNRTRFRGHKGY 410 (410)
Q Consensus 344 ~ssCa~~r~aL~~Cl~~S~Cv~~~~~t~~eCL~~~~---lp-eC~~l~~~~~eCKRg~lD~r~RfrGn~g~ 410 (410)
+.||++++.+|+.||++|+||++++++|++||.+++ || +|++|+.+|++|||||||||+||||++||
T Consensus 2 g~sC~~~r~alk~Cl~~S~Cv~v~~ks~reCldn~~~~~vPeeC~al~~af~dCKRslvDmrkRfrgrkg~ 72 (73)
T KOG4114|consen 2 GASCKDQRKALKICLLRSDCVMVERKSPRECLDNPELKDVPEECIALMKAFLDCKRSLVDMRKRFRGRKGT 72 (73)
T ss_pred cccHHHHHHHHHHHHhcCcceeeecCCHHHHhcCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 469999999999999999999999999999999764 89 99999999999999999999999999997
No 3
>KOG1973|consensus
Probab=99.10 E-value=3.8e-11 Score=118.06 Aligned_cols=55 Identities=38% Similarity=1.116 Sum_probs=46.4
Q ss_pred CCCCCCCcccccccCcCCCCCCCeeeccC--CC-CcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 249 DTGDSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 249 eded~~~~~~C~VCg~~ddgd~~mI~CD~--C~-~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
...++++..|| +|+...+|. ||.||+ |+ .|||+.|||+...+. |.|||+.|....
T Consensus 212 ~~~d~~e~~yC-~Cnqvsyg~--Mi~CDn~~C~~eWFH~~CVGL~~~Pk-gkWyC~~C~~~~ 269 (274)
T KOG1973|consen 212 EAVDPDEPTYC-ICNQVSYGK--MIGCDNPGCPIEWFHFTCVGLKTKPK-GKWYCPRCKAEN 269 (274)
T ss_pred cccCCCCCEEE-Eeccccccc--ccccCCCCCCcceEEEeccccccCCC-Ccccchhhhhhh
Confidence 34456678899 999887887 999999 99 999999999986655 789999998653
No 4
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=98.88 E-value=1.2e-09 Score=105.92 Aligned_cols=49 Identities=39% Similarity=1.123 Sum_probs=43.1
Q ss_pred CCCcccccccCcCCCCCCCeeeccC--CC-CcccceecccCCCCCCCcEEcCCCcC
Q psy5827 253 SKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSK 305 (410)
Q Consensus 253 ~~~~~~C~VCg~~ddgd~~mI~CD~--C~-~W~H~~Clgi~~~~~~~~W~Cp~C~~ 305 (410)
.++..|| .|+++..|. ||.||+ |. .|||+.|||+...|. |.|||+.|..
T Consensus 218 e~e~lYC-fCqqvSyGq--MVaCDn~nCkrEWFH~~CVGLk~pPK-G~WYC~eCk~ 269 (271)
T COG5034 218 EGEELYC-FCQQVSYGQ--MVACDNANCKREWFHLECVGLKEPPK-GKWYCPECKK 269 (271)
T ss_pred cCceeEE-Eeccccccc--ceecCCCCCchhheeccccccCCCCC-CcEeCHHhHh
Confidence 4467899 999999998 999998 88 999999999976655 8999999974
No 5
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=98.87 E-value=2.5e-10 Score=84.34 Aligned_cols=46 Identities=48% Similarity=1.284 Sum_probs=38.9
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCC---CCCCcEEcCCCc
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE---PETSDWFCPKCS 304 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~---~~~~~W~Cp~C~ 304 (410)
+|.+|+..++++ .||+||.|+.|||..|++++.. .....|+|+.|.
T Consensus 1 ~C~vC~~~~~~~-~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDG-DMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTS-SEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCC-CeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 588999976666 8999999999999999999876 223489999986
No 6
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG0825|consensus
Probab=98.24 E-value=3.9e-07 Score=99.36 Aligned_cols=52 Identities=27% Similarity=0.756 Sum_probs=45.5
Q ss_pred CCcccccccCcCCCCCCCeeeccCCCCc-ccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 254 KQVWICPACGVQDDGSLPMIGCDGCDAW-YHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 254 ~~~~~C~VCg~~ddgd~~mI~CD~C~~W-~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
.+.+.|.+|+.+|..+ .||+||+|+.. ||.+||.++.. .+.+.|||..|.-.
T Consensus 213 ~E~~~C~IC~~~DpEd-VLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~dL 266 (1134)
T KOG0825|consen 213 QEEVKCDICTVHDPED-VLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCSLL 266 (1134)
T ss_pred cccccceeeccCChHH-hheeecccccceeeccccCcccccccccceecCcchhh
Confidence 3567899999998888 89999999977 99999999886 56689999999864
No 8
>KOG1244|consensus
Probab=98.15 E-value=7.8e-07 Score=87.48 Aligned_cols=48 Identities=29% Similarity=0.803 Sum_probs=44.0
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcC
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 305 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~ 305 (410)
.+|.+||-.++++ .+++||.|++.||++|+.++.. ++.+.|.|-.|..
T Consensus 282 k~csicgtsendd-qllfcddcdrgyhmyclsppm~eppegswsc~KOG~ 330 (336)
T KOG1244|consen 282 KYCSICGTSENDD-QLLFCDDCDRGYHMYCLSPPMVEPPEGSWSCHLCLE 330 (336)
T ss_pred ceeccccCcCCCc-eeEeecccCCceeeEecCCCcCCCCCCchhHHHHHH
Confidence 4799999998888 8999999999999999999988 8889999999974
No 9
>KOG4299|consensus
Probab=97.92 E-value=4e-06 Score=89.91 Aligned_cols=48 Identities=33% Similarity=0.780 Sum_probs=40.2
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC---CCCCcEEcCCCcC
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE---PETSDWFCPKCSK 305 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~---~~~~~W~Cp~C~~ 305 (410)
.+|..|+....-. .+|+||+|+..||++|+.++.. .+.+.|||+.|.-
T Consensus 254 ~fCsaCn~~~~F~-~~i~CD~Cp~sFH~~CLePPl~~eniP~g~W~C~ec~~ 304 (613)
T KOG4299|consen 254 DFCSACNGSGLFN-DIICCDGCPRSFHQTCLEPPLEPENIPPGSWFCPECKI 304 (613)
T ss_pred HHHHHhCCccccc-cceeecCCchHHHHhhcCCCCCcccCCCCccccCCCee
Confidence 4899999964432 4799999999999999999855 6678999999964
No 10
>KOG1512|consensus
Probab=97.68 E-value=1.6e-05 Score=78.84 Aligned_cols=47 Identities=34% Similarity=0.750 Sum_probs=39.4
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcC-CCcCc
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCP-KCSKV 306 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp-~C~~~ 306 (410)
.|.+|+.|...+ .|++||.|++.||..|||+...+. |.|+|. .|...
T Consensus 316 lC~IC~~P~~E~-E~~FCD~CDRG~HT~CVGL~~lP~-G~WICD~~C~~~ 363 (381)
T KOG1512|consen 316 LCRICLGPVIES-EHLFCDVCDRGPHTLCVGLQDLPR-GEWICDMRCREA 363 (381)
T ss_pred hhhccCCcccch-heeccccccCCCCccccccccccC-ccchhhhHHHHh
Confidence 588899998777 799999999999999999976654 899997 36544
No 11
>KOG4323|consensus
Probab=97.65 E-value=1.8e-05 Score=83.11 Aligned_cols=49 Identities=33% Similarity=0.922 Sum_probs=38.9
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCC-----CCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-----~~~~~W~Cp~C~~~ 306 (410)
..|| -||.+..++ .||+|++|..|||..|.-+... ...+.|||..|...
T Consensus 171 c~vC-~~g~~~~~N-rmlqC~~C~~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~ 224 (464)
T KOG4323|consen 171 CSVC-YCGGPGAGN-RMLQCDKCRQWYHQACHQPLIKDELAGDPFYEWFCDVCNRG 224 (464)
T ss_pred eeee-ecCCcCccc-eeeeecccccHHHHHhccCCCCHhhccCccceEeehhhccc
Confidence 3455 566776666 8999999999999999987554 34579999999865
No 12
>KOG1844|consensus
Probab=97.43 E-value=0.00025 Score=74.67 Aligned_cols=56 Identities=29% Similarity=0.796 Sum_probs=47.1
Q ss_pred CCcccccccCcCCC-CCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcccCch
Q psy5827 254 KQVWICPACGVQDD-GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDEGSR 311 (410)
Q Consensus 254 ~~~~~C~VCg~~dd-gd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~~~k~ 311 (410)
.+...| +|+..++ ++ +||+|+.|..|+|..|+|+.....+..|.|..|.+......
T Consensus 84 ~~~~~c-~c~~~~~~~g-~~i~c~~c~~Wqh~~C~g~~~~~~p~~y~c~~c~~~~~~~~ 140 (508)
T KOG1844|consen 84 REISRC-DCGLEDDMEG-LMIQCDWCGRWQHKICCGSFKSTKPDKYVCEICTPRNKEVE 140 (508)
T ss_pred Cccccc-ccccccCCCc-eeeCCcccCcccCceeeeecCCCCchhceeeeeccccccch
Confidence 456789 9999888 66 99999999999999999998774467999999998765443
No 13
>KOG0955|consensus
Probab=97.32 E-value=0.00016 Score=82.56 Aligned_cols=53 Identities=28% Similarity=0.650 Sum_probs=42.1
Q ss_pred CcccccccCcCCCC-CCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCccc
Q psy5827 255 QVWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 308 (410)
Q Consensus 255 ~~~~C~VCg~~ddg-d~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~~ 308 (410)
++..|.||...+.. ...+|+||+|+..+|..|+|++..+. +.|+|..|.....
T Consensus 218 ~D~~C~iC~~~~~~n~n~ivfCD~Cnl~VHq~Cygi~~ipe-g~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNVIVFCDGCNLAVHQECYGIPFIPE-GQWLCRRCLQSPQ 271 (1051)
T ss_pred CCccceeecccccCCCceEEEcCCCcchhhhhccCCCCCCC-CcEeehhhccCcC
Confidence 45579999886533 13899999999999999999766544 8999999986544
No 14
>KOG0954|consensus
Probab=97.14 E-value=0.00017 Score=79.04 Aligned_cols=50 Identities=32% Similarity=0.806 Sum_probs=41.5
Q ss_pred CcccccccCcCCCCC-CCeeeccCCCCcccceecccCCCCCCCcEEcCCCcC
Q psy5827 255 QVWICPACGVQDDGS-LPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 305 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd-~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~ 305 (410)
+...|.||..+|... ..||+||.|+.-.|..|+||...+. +.|.|..|.-
T Consensus 270 edviCDvCrspD~e~~neMVfCd~Cn~cVHqaCyGIle~p~-gpWlCr~Cal 320 (893)
T KOG0954|consen 270 EDVICDVCRSPDSEEANEMVFCDKCNICVHQACYGILEVPE-GPWLCRTCAL 320 (893)
T ss_pred ccceeceecCCCccccceeEEeccchhHHHHhhhceeecCC-CCeeehhccc
Confidence 446799999986332 3799999999999999999987755 8999999864
No 15
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=97.12 E-value=6.5e-05 Score=52.98 Aligned_cols=34 Identities=35% Similarity=1.055 Sum_probs=19.8
Q ss_pred CeeeccCCCCcccceecccCCCCCCCcEEcCCCc
Q psy5827 271 PMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 304 (410)
Q Consensus 271 ~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~ 304 (410)
.||.|++|..++|..|.|+...+....|+|..|.
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~~~~~~~~W~C~~C~ 36 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVSEVPDGDDWLCDRCE 36 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-SS--SS-----HHH-
T ss_pred ceEEeCCCCCcCChhhCCcccCCCCCcEECCcCC
Confidence 5899999999999999999888665679998773
No 16
>KOG1245|consensus
Probab=96.84 E-value=0.00019 Score=84.31 Aligned_cols=52 Identities=27% Similarity=0.722 Sum_probs=44.6
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCccc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVDE 308 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~~~ 308 (410)
...|.+|..-.+.. .|+.||.|..|||+.|+.+... .+.++|+|+.|+....
T Consensus 1108 ~~~c~~cr~k~~~~-~m~lc~~c~~~~h~~C~rp~~~~~~~~dW~C~~c~~e~~ 1160 (1404)
T KOG1245|consen 1108 NALCKVCRRKKQDE-KMLLCDECLSGFHLFCLRPALSSVPPGDWMCPSCRKEHR 1160 (1404)
T ss_pred hhhhhhhhhcccch-hhhhhHhhhhhHHHHhhhhhhccCCcCCccCCccchhhh
Confidence 35799998876665 7999999999999999998777 6668999999998765
No 17
>KOG0383|consensus
Probab=96.78 E-value=0.00063 Score=75.04 Aligned_cols=50 Identities=26% Similarity=0.689 Sum_probs=39.6
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCccc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVDE 308 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~~~ 308 (410)
....|.+|+. +|. .|+||.|..|||.+|++++.. .+.+.|.|+.|.....
T Consensus 46 ~~e~c~ic~~--~g~--~l~c~tC~~s~h~~cl~~pl~~~p~~~~~c~Rc~~p~~ 96 (696)
T KOG0383|consen 46 EQEACRICAD--GGE--LLWCDTCPASFHASCLGPPLTPQPNGEFICPRCFCPKN 96 (696)
T ss_pred hhhhhhhhcC--CCc--EEEeccccHHHHHHccCCCCCcCCccceeeeeeccCCC
Confidence 4457989987 555 899999999999999999887 4445599999954443
No 18
>COG5141 PHD zinc finger-containing protein [General function prediction only]
Probab=96.58 E-value=0.00081 Score=71.10 Aligned_cols=49 Identities=33% Similarity=0.754 Sum_probs=40.3
Q ss_pred ccccccCcCCCCC-CCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGS-LPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd-~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|.+|...+.+. +.+|.||+|+...|..|.||.-.+. |.|+|..|.-.
T Consensus 194 ~~C~~c~~t~~eN~naiVfCdgC~i~VHq~CYGI~f~pe-G~WlCrkCi~~ 243 (669)
T COG5141 194 DICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPE-GFWLCRKCIYG 243 (669)
T ss_pred hhhHhccccccCCcceEEEecCcchhhhhhcccceecCc-chhhhhhhccc
Confidence 4799998876532 3799999999999999999987655 89999999743
No 19
>KOG1632|consensus
Probab=96.53 E-value=0.0018 Score=66.24 Aligned_cols=51 Identities=31% Similarity=0.732 Sum_probs=43.9
Q ss_pred ccccccCcCCCCCCCeeeccCCCCccccee--cccCCC--CCCCcEEcCCCcCccc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVC--VGLVAE--PETSDWFCPKCSKVDE 308 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~C--lgi~~~--~~~~~W~Cp~C~~~~~ 308 (410)
.+| .|..+++.+.+|+.||.|..|||..| +|++.. +....|+|..|.....
T Consensus 61 ~~~-~~~~~~~p~~~~~~cd~C~~~~~~ec~~v~~~~~e~p~~~~~~c~~c~~~~~ 115 (345)
T KOG1632|consen 61 RYC-KCYKPCDPDDLMEQCDLCEDWYHGECWEVGTAEKEAPKEDPKVCDECKEAQD 115 (345)
T ss_pred chh-hcccccCchhhhhccccccccccccccccCchhhcCCccccccccccchhhh
Confidence 378 88888877658999999999999999 999877 6678999999987754
No 20
>KOG0957|consensus
Probab=96.52 E-value=0.008 Score=63.96 Aligned_cols=49 Identities=27% Similarity=0.691 Sum_probs=40.8
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC-----CCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-----~~~~~W~Cp~C~~~ 306 (410)
..|.||.+..+.- .+++||.|..-||+.|+.+++. ...+.|.|..|...
T Consensus 545 ysCgiCkks~dQH-ll~~CDtC~lhYHlGCL~PPLTR~Pkk~kn~gWqCsECdk~ 598 (707)
T KOG0957|consen 545 YSCGICKKSTDQH-LLTQCDTCHLHYHLGCLSPPLTRLPKKNKNFGWQCSECDKN 598 (707)
T ss_pred eeeeeeccchhhH-HHhhcchhhceeeccccCCccccCcccccCcceeecccccc
Confidence 4699999865544 7899999999999999999887 33678999999554
No 21
>KOG0956|consensus
Probab=96.33 E-value=0.0015 Score=71.38 Aligned_cols=48 Identities=35% Similarity=0.908 Sum_probs=38.1
Q ss_pred ccccCcCC-CCCCCeeeccC--CCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 259 CPACGVQD-DGSLPMIGCDG--CDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 259 C~VCg~~d-dgd~~mI~CD~--C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
|-||..-. +.+..+|.||+ |..+.|..|+||...+. +.|||..|....
T Consensus 8 CCVCSDErGWaeNPLVYCDG~nCsVAVHQaCYGIvqVPt-GpWfCrKCesqe 58 (900)
T KOG0956|consen 8 CCVCSDERGWAENPLVYCDGHNCSVAVHQACYGIVQVPT-GPWFCRKCESQE 58 (900)
T ss_pred eeeecCcCCCccCceeeecCCCceeeeehhcceeEecCC-Cchhhhhhhhhh
Confidence 55996632 33458999997 99999999999987654 899999997543
No 22
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=96.05 E-value=0.14 Score=59.32 Aligned_cols=7 Identities=29% Similarity=0.311 Sum_probs=4.3
Q ss_pred CCCCCCC
Q psy5827 1 MLQHPLI 7 (410)
Q Consensus 1 ~~~~~~~ 7 (410)
+|+||+|
T Consensus 292 lL~h~~i 298 (1021)
T PTZ00266 292 CLGYQII 298 (1021)
T ss_pred HhccHHH
Confidence 3567666
No 23
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=95.62 E-value=0.0071 Score=55.30 Aligned_cols=28 Identities=25% Similarity=0.680 Sum_probs=23.9
Q ss_pred cccceecccCCC-CCCCcEEcCCCcCccc
Q psy5827 281 WYHWVCVGLVAE-PETSDWFCPKCSKVDE 308 (410)
Q Consensus 281 W~H~~Clgi~~~-~~~~~W~Cp~C~~~~~ 308 (410)
.||+.|+.++.. .+.++|+||.|.....
T Consensus 1 g~H~~CL~Ppl~~~P~g~W~Cp~C~~~~~ 29 (148)
T cd04718 1 GFHLCCLRPPLKEVPEGDWICPFCEVEKS 29 (148)
T ss_pred CcccccCCCCCCCCCCCCcCCCCCcCCCC
Confidence 489999999998 6779999999986543
No 24
>KOG4364|consensus
Probab=95.46 E-value=0.094 Score=57.68 Aligned_cols=19 Identities=11% Similarity=-0.109 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCcccccCC
Q psy5827 350 SRADLKLCLLETDCVQVDR 368 (410)
Q Consensus 350 ~r~aL~~Cl~~S~Cv~~~~ 368 (410)
+++.++.|+--..|+.+..
T Consensus 610 ~~A~~ah~a~d~ak~~~~~ 628 (811)
T KOG4364|consen 610 LQALTAHAAKDTAKLIICN 628 (811)
T ss_pred HHHHHHHHhhhhHHHhhhh
Confidence 4555555666666655543
No 25
>KOG0957|consensus
Probab=95.36 E-value=0.01 Score=63.14 Aligned_cols=47 Identities=32% Similarity=0.748 Sum_probs=34.3
Q ss_pred cccccCc--CCCCCCCeeeccCCCCcccceecccCCC------C---CCCcEEcCCCcC
Q psy5827 258 ICPACGV--QDDGSLPMIGCDGCDAWYHWVCVGLVAE------P---ETSDWFCPKCSK 305 (410)
Q Consensus 258 ~C~VCg~--~ddgd~~mI~CD~C~~W~H~~Clgi~~~------~---~~~~W~Cp~C~~ 305 (410)
.|.||.. .++.+ .+|+||.|+.-.|-.|+|+... . ....|||.-|.-
T Consensus 121 iCcVClg~rs~da~-ei~qCd~CGi~VHEgCYGv~dn~si~s~~s~~stepWfCeaC~~ 178 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAG-EILQCDKCGINVHEGCYGVLDNVSIPSGSSDCSTEPWFCEACLY 178 (707)
T ss_pred EEEEeecCcccccc-ceeeccccCceecccccccccccccCCCCccCCCCchhhhhHhc
Confidence 4669944 23333 5999999999999999998632 1 236899988864
No 26
>KOG1632|consensus
Probab=94.94 E-value=0.0032 Score=64.50 Aligned_cols=57 Identities=28% Similarity=0.675 Sum_probs=44.2
Q ss_pred CCCCcccccccCcCCCCCCCeeeccCCCCcccceecccCCC--CCCCc----EEcCCCcCccc
Q psy5827 252 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSD----WFCPKCSKVDE 308 (410)
Q Consensus 252 d~~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~--~~~~~----W~Cp~C~~~~~ 308 (410)
++....+|..||..+....+||+|+.|..|||..|+.+... .-+.. |+|++|.....
T Consensus 235 ~~~~~~~~~~cg~~~~~~~~~~~~~~~e~w~~~~~v~~~~a~~~~~~~~~~~~~c~~~~~~~~ 297 (345)
T KOG1632|consen 235 PDYSKLICDPCGLSDANKKFEICCDLCESWFHGDCVQIFEARKRLNEIRNEVYKCPHCTVLKF 297 (345)
T ss_pred cccccccccccCcchHHHHHHHHHHHHHHHhcccccccccchhhhhhhhccceecCceeeccc
Confidence 33345679999987765469999999999999999998776 22234 99999987543
No 27
>KOG4443|consensus
Probab=94.87 E-value=0.012 Score=64.27 Aligned_cols=49 Identities=31% Similarity=0.840 Sum_probs=39.1
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
..|..|+...+.. .++.|+.|+..||.+|..+... ...+.|+|+.|...
T Consensus 69 rvCe~c~~~gD~~-kf~~Ck~cDvsyh~yc~~P~~~~v~sg~~~ckk~~~c 118 (694)
T KOG4443|consen 69 RVCEACGTTGDPK-KFLLCKRCDVSYHCYCQKPPNDKVPSGPWLCKKCTRC 118 (694)
T ss_pred eeeeeccccCCcc-cccccccccccccccccCCccccccCcccccHHHHhh
Confidence 3566778655555 5779999999999999999877 66689999988654
No 28
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=94.39 E-value=0.032 Score=58.88 Aligned_cols=50 Identities=32% Similarity=0.787 Sum_probs=35.9
Q ss_pred ccccccCcCCCC--CCCeeeccCCCCcccceec--------ccCCC----CCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDG--SLPMIGCDGCDAWYHWVCV--------GLVAE----PETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddg--d~~mI~CD~C~~W~H~~Cl--------gi~~~----~~~~~W~Cp~C~~~ 306 (410)
+-|.+|++.|+. .-.||.||.|+-|-|..|. |++.. ..+..|+|..|...
T Consensus 129 C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~~G~s~~g~~g~~d~~f~C~~C~~~ 192 (446)
T PF07227_consen 129 CMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIGTGPSVKGSIGTLDMQFHCRACGKT 192 (446)
T ss_pred CCccccCCcccCCCCeeEEeccCCCceehhhhhcccccccCCccCCCCCccCceEEEccCCCCh
Confidence 457778875432 2379999999999999995 33222 23569999999865
No 29
>KOG4364|consensus
Probab=93.25 E-value=0.85 Score=50.53 Aligned_cols=14 Identities=29% Similarity=0.441 Sum_probs=9.8
Q ss_pred hhhhhHHHHHHHHH
Q psy5827 345 SACAGSRADLKLCL 358 (410)
Q Consensus 345 ssCa~~r~aL~~Cl 358 (410)
..|++.+.-+..|.
T Consensus 615 ah~a~d~ak~~~~~ 628 (811)
T KOG4364|consen 615 AHAAKDTAKLIICN 628 (811)
T ss_pred HHHhhhhHHHhhhh
Confidence 46777777777776
No 30
>KOG1144|consensus
Probab=92.03 E-value=0.58 Score=52.74 Aligned_cols=6 Identities=17% Similarity=0.063 Sum_probs=3.3
Q ss_pred hhhhhc
Q psy5827 371 PRQCLR 376 (410)
Q Consensus 371 ~~eCL~ 376 (410)
+-+||+
T Consensus 491 lld~ir 496 (1064)
T KOG1144|consen 491 LLDKIR 496 (1064)
T ss_pred HHHHhh
Confidence 455665
No 31
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=89.90 E-value=0.21 Score=46.76 Aligned_cols=48 Identities=27% Similarity=0.807 Sum_probs=35.2
Q ss_pred cccccCcCC---CCCCCeeeccCCCCcccceecccCCC---------CCCCcEEcCCCcCc
Q psy5827 258 ICPACGVQD---DGSLPMIGCDGCDAWYHWVCVGLVAE---------PETSDWFCPKCSKV 306 (410)
Q Consensus 258 ~C~VCg~~d---dgd~~mI~CD~C~~W~H~~Clgi~~~---------~~~~~W~Cp~C~~~ 306 (410)
.|.+|+... .-+ .||.|-+|...||-.|+|+... ...+...|..|...
T Consensus 1 ~C~~C~~~g~~~~kG-~Lv~CQGCs~sYHk~CLG~Rs~ReHlVTKVg~d~FVLQCr~Cig~ 60 (175)
T PF15446_consen 1 TCDTCGYEGDDRNKG-PLVYCQGCSSSYHKACLGPRSQREHLVTKVGDDDFVLQCRRCIGI 60 (175)
T ss_pred CcccccCCCCCccCC-CeEEcCccChHHHhhhcCCccccceeeEEEcCCceEEechhhcCh
Confidence 378886532 223 7999999999999999998664 34456668888744
No 32
>KOG1144|consensus
Probab=88.75 E-value=1.5 Score=49.51 Aligned_cols=14 Identities=64% Similarity=0.729 Sum_probs=5.9
Q ss_pred hhhhhHHHHHHHHh
Q psy5827 91 KKTHKKKEKEKIKK 104 (410)
Q Consensus 91 ~~~~~~~~~~~~~~ 104 (410)
+|...|+++++.+.
T Consensus 157 kKkkeKkek~~~~~ 170 (1064)
T KOG1144|consen 157 KKKKEKKEKEKKKE 170 (1064)
T ss_pred hhhhhhhhhhhhhh
Confidence 33334444444444
No 33
>KOG0163|consensus
Probab=88.23 E-value=2.8 Score=47.45 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=5.5
Q ss_pred HHhhhHHHHHHHH
Q psy5827 129 KEKGKKEEKEKKE 141 (410)
Q Consensus 129 ~e~~e~~~k~k~~ 141 (410)
.|.+|.+++++++
T Consensus 930 qE~~E~ER~rrEa 942 (1259)
T KOG0163|consen 930 QELAEAERKRREA 942 (1259)
T ss_pred HHHHHHHHHhhhh
Confidence 3334444444444
No 34
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=87.95 E-value=0.2 Score=33.51 Aligned_cols=29 Identities=38% Similarity=0.703 Sum_probs=13.1
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceec
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCV 287 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Cl 287 (410)
.|.+|+.+.+++ .+-.|..|+.+.|..|+
T Consensus 2 ~C~~C~~~~~~~-~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDGG-WFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S---EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCCC-ceEECccCCCccChhcC
Confidence 588999987774 67889999999999884
No 35
>KOG4443|consensus
Probab=86.42 E-value=0.14 Score=56.25 Aligned_cols=48 Identities=31% Similarity=0.776 Sum_probs=38.5
Q ss_pred ccccccCcCCCCC--CCeeeccCCCCcccceecccCCC-----CCCCcEEcCCCc
Q psy5827 257 WICPACGVQDDGS--LPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCS 304 (410)
Q Consensus 257 ~~C~VCg~~ddgd--~~mI~CD~C~~W~H~~Clgi~~~-----~~~~~W~Cp~C~ 304 (410)
.+|++|...+... ..|++|+.|.+|.|..|-|+... ..+-.|-|..|+
T Consensus 146 ~~cPvc~~~Y~~~e~~~~~~c~~c~rwsh~~c~~~sdd~~~q~~vD~~~~CS~CR 200 (694)
T KOG4443|consen 146 SYCPVCLIVYQDSESLPMVCCSICQRWSHGGCDGISDDKYMQAQVDLQYKCSTCR 200 (694)
T ss_pred ccCchHHHhhhhccchhhHHHHHhcccccCCCCccchHHHHHHhhhhhcccceee
Confidence 6899998876443 35699999999999999998765 233489999998
No 36
>KOG2891|consensus
Probab=85.65 E-value=7.4 Score=39.60 Aligned_cols=16 Identities=38% Similarity=0.538 Sum_probs=8.6
Q ss_pred hhhhHHHHHHHHHHHH
Q psy5827 178 KDKDKKLKKEKLKKKK 193 (410)
Q Consensus 178 k~~e~k~kkek~kkKK 193 (410)
.+++.+++.+.++-+.
T Consensus 396 qkeeeklk~e~qkike 411 (445)
T KOG2891|consen 396 QKEEEKLKAEEQKIKE 411 (445)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3455566666555444
No 37
>PF07496 zf-CW: CW-type Zinc Finger; InterPro: IPR011124 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a CW-type zinc finger motif, named for its conserved cysteine and tryptophan residues. It is predicted to be a highly specialised mononuclear four-cysteine (C4) zinc finger that plays a role in DNA binding and/or promoting protein-protein interactions in complicated eukaryotic processes including chromatin methylation status and early embryonic development. Weak homology to members of IPR001965 from INTERPRO further evidences these predictions. The domain is found exclusively in vertebrates, vertebrate-infecting parasites and higher plants []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2RR4_A 2E61_A 2L7P_A.
Probab=83.28 E-value=0.48 Score=35.51 Aligned_cols=32 Identities=22% Similarity=0.593 Sum_probs=17.2
Q ss_pred CeeeccCCCCcccceecccCC--CCCCCcEEcCCC
Q psy5827 271 PMIGCDGCDAWYHWVCVGLVA--EPETSDWFCPKC 303 (410)
Q Consensus 271 ~mI~CD~C~~W~H~~Clgi~~--~~~~~~W~Cp~C 303 (410)
.||+||.|..|-.+. .++.. ...++.|+|..-
T Consensus 2 ~WVQCd~C~KWR~lp-~~~~~~~~~~~d~W~C~~n 35 (50)
T PF07496_consen 2 YWVQCDSCLKWRRLP-EEVDPIREELPDPWYCSMN 35 (50)
T ss_dssp EEEE-TTT--EEEE--CCHHCTSCCSSTT--GGGS
T ss_pred eEEECCCCCceeeCC-hhhCcccccCCCeEEcCCC
Confidence 599999999998876 44433 222348999763
No 38
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=81.77 E-value=0.79 Score=35.44 Aligned_cols=31 Identities=35% Similarity=0.807 Sum_probs=25.9
Q ss_pred ccccccCcCCC-CCCCeeeccCCCCcccceecc
Q psy5827 257 WICPACGVQDD-GSLPMIGCDGCDAWYHWVCVG 288 (410)
Q Consensus 257 ~~C~VCg~~dd-gd~~mI~CD~C~~W~H~~Clg 288 (410)
..|.+|+.+.. ++ ..|.|..|..-||-.|..
T Consensus 6 ~~C~~Cg~~~~~~d-DiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGD-DIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCC-CEEECCCCCCcccHHHHh
Confidence 47999999873 33 599999999999999983
No 39
>KOG1473|consensus
Probab=81.02 E-value=0.89 Score=52.97 Aligned_cols=45 Identities=24% Similarity=0.482 Sum_probs=37.2
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcC
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 305 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~ 305 (410)
..|.+|.. .++ .+||+.|++.||+.|+.++.. .+...|-|..|..
T Consensus 345 dhcrf~~d--~~~--~lc~Et~prvvhlEcv~hP~~~~~s~~~e~evc~~ 390 (1414)
T KOG1473|consen 345 DHCRFCHD--LGD--LLCCETCPRVVHLECVFHPRFAVPSAFWECEVCNI 390 (1414)
T ss_pred ccccccCc--ccc--eeecccCCceEEeeecCCccccCCCccchhhhhhh
Confidence 46888876 454 899999999999999998877 5557899999873
No 40
>KOG0163|consensus
Probab=79.51 E-value=18 Score=41.45 Aligned_cols=7 Identities=43% Similarity=0.553 Sum_probs=3.0
Q ss_pred HHhhhhc
Q psy5827 194 KEKERSS 200 (410)
Q Consensus 194 ~EKeRss 200 (410)
.|.+|..
T Consensus 1003 ~Eqer~D 1009 (1259)
T KOG0163|consen 1003 LEQERRD 1009 (1259)
T ss_pred HHHHHHH
Confidence 3444443
No 41
>KOG2412|consensus
Probab=78.39 E-value=9 Score=41.90 Aligned_cols=25 Identities=32% Similarity=0.504 Sum_probs=9.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH
Q psy5827 127 KEKEKGKKEEKEKKEEKEKKEEKEF 151 (410)
Q Consensus 127 ~e~e~~e~~~k~k~~~~~~~~~~~~ 151 (410)
++.+.-|..+.+++...+++++.++
T Consensus 204 ~~~q~~eqi~~~~~~~e~kr~Eaer 228 (591)
T KOG2412|consen 204 REKQRKEQIRERKERSEEKREEAER 228 (591)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3333333333333333333333333
No 42
>KOG2752|consensus
Probab=77.71 E-value=1.1 Score=45.84 Aligned_cols=31 Identities=26% Similarity=0.738 Sum_probs=25.1
Q ss_pred ccccccCcCCCC-----CCCeeeccCCCCccc-ceecc
Q psy5827 257 WICPACGVQDDG-----SLPMIGCDGCDAWYH-WVCVG 288 (410)
Q Consensus 257 ~~C~VCg~~ddg-----d~~mI~CD~C~~W~H-~~Clg 288 (410)
.+| .|..++++ +..|++|-.|..||| -.|+.
T Consensus 129 ~~C-~Cd~~Ypdp~~~~e~~m~QC~iCEDWFHce~c~~ 165 (345)
T KOG2752|consen 129 LFC-KCDTPYPDPVRTEEGEMLQCVICEDWFHCEGCMQ 165 (345)
T ss_pred eeE-EecCCCCCccccccceeeeEEeccchhcccccCc
Confidence 579 99998765 247999999999999 66653
No 43
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=77.02 E-value=1.3 Score=37.40 Aligned_cols=32 Identities=28% Similarity=0.668 Sum_probs=25.9
Q ss_pred CcccccccCcCCCCCCCeeeccC--CCCcccceeccc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGL 289 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~--C~~W~H~~Clgi 289 (410)
....|.+|+.. ++ ..|.|.. |..+||..|.-.
T Consensus 54 ~~~~C~iC~~~--~G-~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 54 FKLKCSICGKS--GG-ACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred cCCcCcCCCCC--Cc-eeEEcCCCCCCcCCCHHHHHH
Confidence 34579999995 33 4899998 999999999743
No 44
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=75.70 E-value=2.6 Score=33.64 Aligned_cols=49 Identities=27% Similarity=0.531 Sum_probs=19.5
Q ss_pred cccccCcCC--CCCCCeeecc--CCCCcccceeccc-----CCC---CCCCcEEcCCCcCc
Q psy5827 258 ICPACGVQD--DGSLPMIGCD--GCDAWYHWVCVGL-----VAE---PETSDWFCPKCSKV 306 (410)
Q Consensus 258 ~C~VCg~~d--dgd~~mI~CD--~C~~W~H~~Clgi-----~~~---~~~~~W~Cp~C~~~ 306 (410)
.|.||.... ++....+.|+ .|..-||..|+-- +.. .....+-||.|...
T Consensus 4 ~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~ 64 (70)
T PF11793_consen 4 ECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSP 64 (70)
T ss_dssp S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SE
T ss_pred CCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCe
Confidence 599997642 3434578898 7999999999842 111 22346789999854
No 45
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=74.71 E-value=37 Score=36.94 Aligned_cols=9 Identities=44% Similarity=0.549 Sum_probs=4.6
Q ss_pred cccccccce
Q psy5827 61 GVTPMVPNI 69 (410)
Q Consensus 61 ~~~~~~~~~ 69 (410)
=|.|++-|+
T Consensus 156 I~IPL~~~~ 164 (489)
T PF05262_consen 156 IVIPLSDNI 164 (489)
T ss_pred EEEeccccc
Confidence 355665444
No 46
>KOG4299|consensus
Probab=73.64 E-value=3 Score=45.90 Aligned_cols=51 Identities=27% Similarity=0.577 Sum_probs=39.5
Q ss_pred CCCCcccccccCcCCCCCCCeeeccCCCCcccceecccCCC--CCCCcEEcCCCcCc
Q psy5827 252 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKV 306 (410)
Q Consensus 252 d~~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~--~~~~~W~Cp~C~~~ 306 (410)
...+...|.+|.. +|+ ..+|+.|+..||+.|.+.... .....|.|..|...
T Consensus 43 ~~k~~ts~~~~~~--~gn--~~~~~~~~~s~h~~~~~~~~sp~~~~~~~~~~~~~~~ 95 (613)
T KOG4299|consen 43 SGKAATSCGICKS--GGN--LLCCDHCPASFHLECDKPPLSPDLKGSEINCSRCPKG 95 (613)
T ss_pred ccchhhhcchhhh--cCC--ccccccCccccchhccCcccCcccccccccccCCCcc
Confidence 3445677988987 555 789999999999999998777 34467888888763
No 47
>KOG1512|consensus
Probab=73.17 E-value=1 Score=45.57 Aligned_cols=49 Identities=22% Similarity=0.328 Sum_probs=36.0
Q ss_pred ccccccCcCCCC-----CCCeeeccCCCCcccceecccCCC----CCCCcEEcCCCcC
Q psy5827 257 WICPACGVQDDG-----SLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCSK 305 (410)
Q Consensus 257 ~~C~VCg~~ddg-----d~~mI~CD~C~~W~H~~Clgi~~~----~~~~~W~Cp~C~~ 305 (410)
..|.+|-..-.+ ...||+|-.|...+|-+|+..+.. .....|.|..|.-
T Consensus 259 ~~~~~~~~~~~~~~~~r~~S~I~C~~C~~~~HP~Ci~M~~elv~~~KTY~W~C~~C~l 316 (381)
T KOG1512|consen 259 NERKHFWDIQTNIIQSRRNSWIVCKPCATRPHPYCVAMIPELVGQYKTYFWKCSSCEL 316 (381)
T ss_pred hhhhhhhcchhhhhhhhhccceeecccccCCCCcchhcCHHHHhHHhhcchhhcccHh
Confidence 357777542111 136999999999999999988765 4457899999864
No 48
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=71.00 E-value=3.1 Score=39.56 Aligned_cols=41 Identities=27% Similarity=0.717 Sum_probs=30.9
Q ss_pred ccccccCcC-----CCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQ-----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~-----ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
+.|.+|+.+ .+.+ ..+.|..|...||-.|..- -.||.|.+.
T Consensus 153 fiCe~C~~~~~IfPF~~~-~~~~C~~C~~v~H~~C~~~--------~~CpkC~R~ 198 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQID-TTVRCPKCKSVFHKSCFRK--------KSCPKCARR 198 (202)
T ss_pred CCCccCCCCCCCCCCCCC-CeeeCCcCccccchhhcCC--------CCCCCcHhH
Confidence 468888763 3333 5889999999999999863 129999854
No 49
>KOG2891|consensus
Probab=71.00 E-value=27 Score=35.65 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=13.1
Q ss_pred hhhhcchHHHHhHHHHHHHHHhhchh
Q psy5827 154 KEDKEKPVEKIRKEEKDSEKEKKSKD 179 (410)
Q Consensus 154 ~~~k~~~~e~~rke~~~~ekeKk~k~ 179 (410)
|+++.+..|+.++|.+..++++++..
T Consensus 350 aeerqraeekeq~eaee~~ra~kr~e 375 (445)
T KOG2891|consen 350 AEERQRAEEKEQKEAEELERARKREE 375 (445)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555544
No 50
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=69.82 E-value=65 Score=35.10 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=11.0
Q ss_pred ccccccccceeeccCcccccccccc
Q psy5827 60 LGVTPMVPNIVKVTSSEDLGEIKKD 84 (410)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (410)
-|-|-||--|...--+.+|..|+-|
T Consensus 151 pG~tqI~IPL~~~~~~~~~s~vdt~ 175 (489)
T PF05262_consen 151 PGKTQIVIPLSDNILSGSLSDVDTD 175 (489)
T ss_pred CCCceEEEeccccccCCCccccchh
Confidence 3455555444443344444444433
No 51
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=68.72 E-value=3 Score=34.36 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=21.8
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecc
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG 288 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clg 288 (410)
.|.+|+++-+...+.+..+ +..+|..|+.
T Consensus 80 ~C~vC~k~l~~~~f~~~p~--~~v~H~~C~~ 108 (109)
T PF10367_consen 80 KCSVCGKPLGNSVFVVFPC--GHVVHYSCIK 108 (109)
T ss_pred CccCcCCcCCCceEEEeCC--CeEEeccccc
Confidence 5999999877664555544 4889999973
No 52
>KOG1473|consensus
Probab=68.66 E-value=1.1 Score=52.13 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=42.6
Q ss_pred ccccccCcCCCCCCCeeeccC-CCCcccc-eecccCCC---CCCCcEEcCCCcCcccCchhhhh
Q psy5827 257 WICPACGVQDDGSLPMIGCDG-CDAWYHW-VCVGLVAE---PETSDWFCPKCSKVDEGSRKEKK 315 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~-C~~W~H~-~Clgi~~~---~~~~~W~Cp~C~~~~~~k~k~kk 315 (410)
..|-||++ ++ +.++|++ |+..||+ .|++-+.. ..++.|+|+.|.-.+.+.+-.-.
T Consensus 429 rrl~Ie~~--de--t~l~yysT~pqly~ll~cLd~~~~e~~L~d~i~~~~ee~~rqM~lT~~lt 488 (1414)
T KOG1473|consen 429 RRLRIEGM--DE--TLLWYYSTCPQLYHLLRCLDRTYVEMYLCDGIWERREEIIRQMGLTEELT 488 (1414)
T ss_pred eeeEEecC--CC--cEEEEecCcHHHHHHHHHhchHHHHHhhccchhhhHHHHHHhccchhhhh
Confidence 45878886 44 5899999 9999999 99994333 56789999999988776655443
No 53
>KOG2626|consensus
Probab=68.42 E-value=6.7 Score=42.70 Aligned_cols=52 Identities=15% Similarity=0.519 Sum_probs=37.9
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCC-------CCCCcEEcCCCcCccc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-------PETSDWFCPKCSKVDE 308 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-------~~~~~W~Cp~C~~~~~ 308 (410)
.++| .|+...+....-++|-.|..|+|+.|+..... .....|.|..|...+.
T Consensus 20 ~~~~-y~e~~r~l~~~elqcs~clk~~~~~~~~~~~~~~s~~pf~t~y~fvc~~c~~~~~ 78 (544)
T KOG2626|consen 20 ATVC-YCEGERNLGIVELQCSTCLKWFHLPTLEAFHLIKSSLPFMTSYEFVCKECTPSGR 78 (544)
T ss_pred cccc-ccccccccCceeeEeeecccccccccccccccccccCCcccceeEEeccccCcch
Confidence 3568 88887666667899999999999866533221 3346899999997743
No 54
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=68.25 E-value=23 Score=35.98 Aligned_cols=18 Identities=39% Similarity=0.506 Sum_probs=8.0
Q ss_pred hhcchHHHHhHHHHHHHH
Q psy5827 156 DKEKPVEKIRKEEKDSEK 173 (410)
Q Consensus 156 ~k~~~~e~~rke~~~~ek 173 (410)
++-+..||++-+++++++
T Consensus 300 ~~lspeeQrK~eeKe~kk 317 (321)
T PF07946_consen 300 SKLSPEEQRKYEEKERKK 317 (321)
T ss_pred hcCCHHHHHHHHHHHHHH
Confidence 344444555544444433
No 55
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=64.49 E-value=0.77 Score=32.74 Aligned_cols=43 Identities=21% Similarity=0.525 Sum_probs=28.2
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCc
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 304 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~ 304 (410)
.|.||......+..++... |+-.||..|+..-... ...||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~---~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKR---NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHH---SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHh---CCcCCccC
Confidence 4889988764332566655 9999999998643321 23788874
No 56
>KOG3054|consensus
Probab=64.09 E-value=46 Score=33.42 Aligned_cols=11 Identities=27% Similarity=0.308 Sum_probs=7.3
Q ss_pred ccccccccccc
Q psy5827 75 SEDLGEIKKDK 85 (410)
Q Consensus 75 ~~~~~~~~~~~ 85 (410)
-||-+.++-|+
T Consensus 81 ~ee~~~~dg~e 91 (299)
T KOG3054|consen 81 VEEEGSGDGDE 91 (299)
T ss_pred ccccccccccc
Confidence 46666677766
No 57
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=63.37 E-value=3.8 Score=33.18 Aligned_cols=31 Identities=29% Similarity=0.753 Sum_probs=24.8
Q ss_pred ccccccCcCCCCCCCeeeccC--CCCcccceecccC
Q psy5827 257 WICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGLV 290 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~--C~~W~H~~Clgi~ 290 (410)
..|.+|+.+ .|. .|.|.. |..+||..|.-..
T Consensus 37 ~~C~~C~~~-~Ga--~i~C~~~~C~~~fH~~CA~~~ 69 (90)
T PF13771_consen 37 LKCSICKKK-GGA--CIGCSHPGCSRSFHVPCARKA 69 (90)
T ss_pred CCCcCCCCC-CCe--EEEEeCCCCCcEEChHHHccC
Confidence 579999985 244 899986 9999999997543
No 58
>KOG1246|consensus
Probab=62.30 E-value=13 Score=42.81 Aligned_cols=52 Identities=31% Similarity=0.675 Sum_probs=41.4
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCccc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVDE 308 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~~~ 308 (410)
....|..|....... .. .|++|..-||..|..++.. ...+.|.|+.|.....
T Consensus 154 ~~~~~~~~~k~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (904)
T KOG1246|consen 154 DYPQCNTCSKGKEEK-LL-LCDSCDDSYHTYCLRPPLTRVPDGDWRCPKCIPTPE 206 (904)
T ss_pred cchhhhccccCCCcc-ce-ecccccCcccccccCCCCCcCCcCcccCCccccccc
Confidence 345688888865543 45 9999999999999998877 6678999999987743
No 59
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=57.96 E-value=8.4 Score=25.80 Aligned_cols=29 Identities=28% Similarity=0.575 Sum_probs=22.6
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceec
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCV 287 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Cl 287 (410)
.|.+|++.-++.. .-.|+.|..-+|..|+
T Consensus 2 ~C~~C~~~~~~~~-~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY-FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE-eEEeCCCCCeEcCccC
Confidence 5899988655542 6779999999998884
No 60
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=56.18 E-value=48 Score=32.56 Aligned_cols=33 Identities=24% Similarity=0.622 Sum_probs=22.3
Q ss_pred eeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 272 MIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 272 mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
-|.|-.|. +|..|+.+...+. ..|+|++|-...
T Consensus 192 alIC~~C~--hhngl~~~~ek~~-~efiC~~Cn~~n 224 (251)
T COG5415 192 ALICPQCH--HHNGLYRLAEKPI-IEFICPHCNHKN 224 (251)
T ss_pred hhcccccc--ccccccccccccc-hheecccchhhc
Confidence 34556664 3777777765544 489999997654
No 61
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=50.85 E-value=7.2 Score=32.82 Aligned_cols=46 Identities=26% Similarity=0.681 Sum_probs=26.7
Q ss_pred ccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 259 CPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 259 C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
|+.|..|.++- .+| -..|.-.||..|+--=.......=.||.|+..
T Consensus 35 Cp~Ck~Pgd~C-plv-~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~ 80 (85)
T PF12861_consen 35 CPDCKFPGDDC-PLV-WGKCSHNFHMHCILKWLSTQSSKGQCPMCRQP 80 (85)
T ss_pred CCCccCCCCCC-cee-eccCccHHHHHHHHHHHccccCCCCCCCcCCe
Confidence 44444443333 333 34599999999975422211224589999854
No 62
>COG1773 Rubredoxin [Energy production and conversion]
Probab=48.94 E-value=12 Score=29.08 Aligned_cols=41 Identities=32% Similarity=0.714 Sum_probs=24.9
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcC
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 305 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~ 305 (410)
+.|.+||-.++.+.-.--|+.|+ |-.-...+.+|+||.|..
T Consensus 4 ~~C~~CG~vYd~e~Gdp~~gi~p--------gT~fedlPd~w~CP~Cg~ 44 (55)
T COG1773 4 WRCSVCGYVYDPEKGDPRCGIAP--------GTPFEDLPDDWVCPECGV 44 (55)
T ss_pred eEecCCceEeccccCCccCCCCC--------CCchhhCCCccCCCCCCC
Confidence 46999998776653333344443 222122347899999985
No 63
>TIGR02794 tolA_full TolA protein. TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.
Probab=47.88 E-value=2.8e+02 Score=28.76 Aligned_cols=11 Identities=18% Similarity=0.383 Sum_probs=5.3
Q ss_pred hhhHHHHHHHH
Q psy5827 347 CAGSRADLKLC 357 (410)
Q Consensus 347 Ca~~r~aL~~C 357 (410)
|.....++..|
T Consensus 312 D~AAl~AV~ka 322 (346)
T TIGR02794 312 CQAALAAVAKA 322 (346)
T ss_pred HHHHHHHHHHh
Confidence 44445554444
No 64
>KOG1829|consensus
Probab=45.89 E-value=5.4 Score=43.99 Aligned_cols=43 Identities=26% Similarity=0.660 Sum_probs=29.8
Q ss_pred ccccccCcC-----CCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQ-----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~-----ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
+.|.+|... ...+ ...-|+.|..|||-.|+..... .||.|.+.
T Consensus 512 fiCe~Cq~~~iiyPF~~~-~~~rC~~C~avfH~~C~~r~s~------~CPrC~R~ 559 (580)
T KOG1829|consen 512 FICELCQHNDIIYPFETR-NTRRCSTCLAVFHKKCLRRKSP------CCPRCERR 559 (580)
T ss_pred eeeeeccCCCcccccccc-cceeHHHHHHHHHHHHHhccCC------CCCchHHH
Confidence 567777442 1111 4578999999999999876432 29999854
No 65
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=45.81 E-value=16 Score=26.70 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=25.5
Q ss_pred CcccccccCcCCCC-CCCeeeccCCCCcccceecccC
Q psy5827 255 QVWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGLV 290 (410)
Q Consensus 255 ~~~~C~VCg~~ddg-d~~mI~CD~C~~W~H~~Clgi~ 290 (410)
.+.+|.+|+..-.| ....+.|..|....|..|+...
T Consensus 10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~ 46 (53)
T PF00130_consen 10 KPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKV 46 (53)
T ss_dssp STEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTS
T ss_pred CCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhc
Confidence 34689999986622 1257899999999999998643
No 66
>PF13341 RAG2_PHD: RAG2 PHD domain; PDB: 2JWO_A 2V86_B 2V85_B 2V87_A 2V83_C 2V89_A 2V88_A.
Probab=45.67 E-value=8.1 Score=31.63 Aligned_cols=50 Identities=26% Similarity=0.564 Sum_probs=24.4
Q ss_pred CCcccccccCcC------CCCC----CCeeeccCC-CCcccceecccCCC------CCCCcEEcCCC
Q psy5827 254 KQVWICPACGVQ------DDGS----LPMIGCDGC-DAWYHWVCVGLVAE------PETSDWFCPKC 303 (410)
Q Consensus 254 ~~~~~C~VCg~~------ddgd----~~mI~CD~C-~~W~H~~Clgi~~~------~~~~~W~Cp~C 303 (410)
.|+.-|..|... +.+. .-||.|.+= +-|.|..|++++.. .....|||..=
T Consensus 2 YWi~cc~~C~~d~NtW~P~YStEL~kPAMI~cs~~~GHWvhaqCm~LsE~~L~~LSq~n~KYfC~dH 68 (78)
T PF13341_consen 2 YWIKCCAGCDVDVNTWVPYYSTELNKPAMIFCSRGGGHWVHAQCMDLSETMLIQLSQENTKYFCNDH 68 (78)
T ss_dssp TSS-SSTT----TTT----STT-SSS--EEEE-STT-EEEETGGGT--HHHHHHHHHSSS-B--TTT
T ss_pred cceEecCCCccCCcccccccccccCCceEEEEeCCCceEeEeecccchHHHHHHHccCCceEEEhhh
Confidence 356667777652 2221 269999874 48999999998764 44568999653
No 67
>KOG3612|consensus
Probab=43.86 E-value=24 Score=38.75 Aligned_cols=49 Identities=18% Similarity=0.264 Sum_probs=37.5
Q ss_pred CCCcccccccCcCCCCCCCeeeccCCCCcccceecccCCC--CCCCcEEcCCCcC
Q psy5827 253 SKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSK 305 (410)
Q Consensus 253 ~~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~--~~~~~W~Cp~C~~ 305 (410)
.+..++|.-|..+ +. .+-|+.|.+-||..|..+... .....|.|+.|..
T Consensus 57 ~N~d~~cfechlp--g~--vl~c~vc~Rs~h~~c~sp~~q~r~~s~p~~~p~p~s 107 (588)
T KOG3612|consen 57 SNIDPFCFECHLP--GA--VLKCIVCHRSFHENCQSPDPQKRNYSVPSDKPQPYS 107 (588)
T ss_pred cCCCcccccccCC--cc--eeeeehhhccccccccCcchhhccccccccCCcccc
Confidence 3455789999983 44 678999999999999988665 2235788888854
No 68
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=42.39 E-value=12 Score=26.36 Aligned_cols=34 Identities=24% Similarity=0.351 Sum_probs=25.9
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceeccc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi 289 (410)
..+|.+|+..-.+....+.|..|....|..|+..
T Consensus 11 ~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~~ 44 (49)
T smart00109 11 PTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAEK 44 (49)
T ss_pred CCCccccccccCcCCCCcCCCCCCchHHHHHHhh
Confidence 3579999886654312678999999999999754
No 69
>KOG1244|consensus
Probab=42.31 E-value=8.2 Score=39.06 Aligned_cols=51 Identities=22% Similarity=0.467 Sum_probs=38.3
Q ss_pred CcccccccCcCC-------CCCCCeeeccCCCCcccceecccCCC----CCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQD-------DGSLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~d-------dgd~~mI~CD~C~~W~H~~Clgi~~~----~~~~~W~Cp~C~~~ 306 (410)
...||..|.... -.+ .+|.|..|++.-|-+|+..+.. .....|.|-.|.--
T Consensus 223 Pn~YCDFclgdsr~nkkt~~pe-elvscsdcgrsghpsclqft~nm~~avk~yrwqcieck~c 284 (336)
T KOG1244|consen 223 PNPYCDFCLGDSRENKKTGMPE-ELVSCSDCGRSGHPSCLQFTANMIAAVKTYRWQCIECKYC 284 (336)
T ss_pred CCcccceeccccccccccCCch-hhcchhhcCCCCCcchhhhhHHHHHHHHhheeeeeeccee
Confidence 346899995522 122 6899999999999999988766 44578999988743
No 70
>KOG4661|consensus
Probab=41.90 E-value=1.4e+02 Score=33.54 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=6.0
Q ss_pred cceeeccCccccc
Q psy5827 67 PNIVKVTSSEDLG 79 (410)
Q Consensus 67 ~~~~~~~~~~~~~ 79 (410)
.|-..+|-|.+-|
T Consensus 552 snRsR~tksgsRG 564 (940)
T KOG4661|consen 552 SNRSRSTKSGSRG 564 (940)
T ss_pred cccccccccCCCc
Confidence 4444455444433
No 71
>KOG2002|consensus
Probab=40.25 E-value=94 Score=36.54 Aligned_cols=11 Identities=27% Similarity=0.081 Sum_probs=4.3
Q ss_pred HHHHHHHhhhH
Q psy5827 124 KIDKEKEKGKK 134 (410)
Q Consensus 124 ~~~~e~e~~e~ 134 (410)
+.+++.+.+|+
T Consensus 846 ~a~~~~~~ee~ 856 (1018)
T KOG2002|consen 846 EALIEKELEEA 856 (1018)
T ss_pred HHHHHHHHHHH
Confidence 33344444333
No 72
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=40.22 E-value=15 Score=26.15 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=25.7
Q ss_pred cccccccCcCCCCC-CCeeeccCCCCcccceeccc
Q psy5827 256 VWICPACGVQDDGS-LPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 256 ~~~C~VCg~~ddgd-~~mI~CD~C~~W~H~~Clgi 289 (410)
..+|.+|+....+. ...+.|..|....|..|..-
T Consensus 11 ~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~ 45 (50)
T cd00029 11 PTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADK 45 (50)
T ss_pred CCChhhcchhhhccccceeEcCCCCCchhhhhhcc
Confidence 34799998865541 25678999999999999754
No 73
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=39.03 E-value=13 Score=26.99 Aligned_cols=41 Identities=24% Similarity=0.572 Sum_probs=18.8
Q ss_pred ccccCcCCCCCCCeeecc--CCCCcccceecccCCCCCCCcEEcCCC
Q psy5827 259 CPACGVQDDGSLPMIGCD--GCDAWYHWVCVGLVAEPETSDWFCPKC 303 (410)
Q Consensus 259 C~VCg~~ddgd~~mI~CD--~C~~W~H~~Clgi~~~~~~~~W~Cp~C 303 (410)
|.+|...-.-+ +.|. .|+.-+|..|+.-........ .||.|
T Consensus 1 C~~C~~iv~~G---~~C~~~~C~~r~H~~C~~~y~r~~~~~-~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQG---QRCSNRDCNVRLHDDCFKKYFRHRSNP-KCPNC 43 (43)
T ss_dssp -TTT-SB-SSS---EE-SS--S--EE-HHHHHHHTTT-SS--B-TTT
T ss_pred CcccchhHeee---ccCCCCccCchHHHHHHHHHHhcCCCC-CCcCC
Confidence 45665533323 6788 599889999987544422222 78876
No 74
>KOG3277|consensus
Probab=38.35 E-value=15 Score=34.33 Aligned_cols=28 Identities=21% Similarity=0.762 Sum_probs=20.2
Q ss_pred cccccccCcC---------CCCCCCeeeccCCCCcccc
Q psy5827 256 VWICPACGVQ---------DDGSLPMIGCDGCDAWYHW 284 (410)
Q Consensus 256 ~~~C~VCg~~---------ddgd~~mI~CD~C~~W~H~ 284 (410)
.+.|.+|+.- |..+..+|+|++|.. +|+
T Consensus 79 ~yTCkvCntRs~ktisk~AY~~GvVivqC~gC~~-~Hl 115 (165)
T KOG3277|consen 79 AYTCKVCNTRSTKTISKQAYEKGVVIVQCPGCKN-HHL 115 (165)
T ss_pred EEEeeccCCccccccChhhhhCceEEEECCCCcc-cee
Confidence 3679999872 334458999999986 454
No 75
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=37.56 E-value=23 Score=30.56 Aligned_cols=47 Identities=23% Similarity=0.512 Sum_probs=30.2
Q ss_pred ccccccCcCCCCCCCeeec------cCC---CCcccceecccCCC------CCCCcEEcCCCcC
Q psy5827 257 WICPACGVQDDGSLPMIGC------DGC---DAWYHWVCVGLVAE------PETSDWFCPKCSK 305 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~C------D~C---~~W~H~~Clgi~~~------~~~~~W~Cp~C~~ 305 (410)
..|..|.+-..+. .+.| ..| ..-|-..||-.... .....|.||.|+.
T Consensus 8 ~~CHqCrqKt~~~--~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDF--KTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCC--ceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 4698898854443 4556 556 66666677532111 3457899999985
No 76
>KOG1952|consensus
Probab=37.38 E-value=17 Score=41.73 Aligned_cols=53 Identities=25% Similarity=0.688 Sum_probs=37.7
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceeccc---CCC-CCCCcEEcCCCcCccc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL---VAE-PETSDWFCPKCSKVDE 308 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi---~~~-~~~~~W~Cp~C~~~~~ 308 (410)
..-|.||...-+....+..|-+|...||+.|+.- ... .....|.||.|.....
T Consensus 191 ~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 191 KYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred ceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 3569999764443336789999999999999742 111 3347899999996543
No 77
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=37.32 E-value=19 Score=24.61 Aligned_cols=10 Identities=40% Similarity=1.451 Sum_probs=8.1
Q ss_pred CcEEcCCCcC
Q psy5827 296 SDWFCPKCSK 305 (410)
Q Consensus 296 ~~W~Cp~C~~ 305 (410)
..|.||.|..
T Consensus 16 ~~~~CP~Cg~ 25 (33)
T cd00350 16 APWVCPVCGA 25 (33)
T ss_pred CCCcCcCCCC
Confidence 4799999974
No 78
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=37.30 E-value=15 Score=36.49 Aligned_cols=28 Identities=21% Similarity=0.567 Sum_probs=13.5
Q ss_pred cccccccCcC-------CCC--CCCeeeccCCCCccc
Q psy5827 256 VWICPACGVQ-------DDG--SLPMIGCDGCDAWYH 283 (410)
Q Consensus 256 ~~~C~VCg~~-------ddg--d~~mI~CD~C~~W~H 283 (410)
..+|+|||.. ..+ +.-++.|..|+.-+|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~ 208 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWR 208 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEEETTT--EEE
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeee
Confidence 4689999983 111 236889999995445
No 79
>KOG3053|consensus
Probab=36.98 E-value=15 Score=36.89 Aligned_cols=50 Identities=22% Similarity=0.552 Sum_probs=35.2
Q ss_pred ccccccCcCCCCC--CCee---eccCCCCcccceeccc--CCC---CCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGS--LPMI---GCDGCDAWYHWVCVGL--VAE---PETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd--~~mI---~CD~C~~W~H~~Clgi--~~~---~~~~~W~Cp~C~~~ 306 (410)
-+|.+|-..|.++ ..|| .|-+-..|.|.+|+.. +.. .......|+.|...
T Consensus 21 R~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTE 80 (293)
T KOG3053|consen 21 RCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTE 80 (293)
T ss_pred eeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcch
Confidence 4799997765443 2355 4788889999999853 222 34468999999864
No 80
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=35.64 E-value=29 Score=38.90 Aligned_cols=49 Identities=24% Similarity=0.566 Sum_probs=33.7
Q ss_pred cccccCcCCCCCCCeeeccCCCCcc-cceecccCCCCCCCcEEcCCCcCccc
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWY-HWVCVGLVAEPETSDWFCPKCSKVDE 308 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~-H~~Clgi~~~~~~~~W~Cp~C~~~~~ 308 (410)
.|+.||.....+ .-+|..|+.-+ |..|..-....+.+.-||+.|.....
T Consensus 3 ~Cp~Cg~~n~~~--akFC~~CG~~l~~~~Cp~CG~~~~~~~~fC~~CG~~~~ 52 (645)
T PRK14559 3 ICPQCQFENPNN--NRFCQKCGTSLTHKPCPQCGTEVPVDEAHCPNCGAETG 52 (645)
T ss_pred cCCCCCCcCCCC--CccccccCCCCCCCcCCCCCCCCCcccccccccCCccc
Confidence 588888864444 56888888543 35676665555567889999986543
No 81
>PF12773 DZR: Double zinc ribbon
Probab=35.11 E-value=33 Score=24.93 Aligned_cols=8 Identities=50% Similarity=1.547 Sum_probs=4.0
Q ss_pred cccccCcC
Q psy5827 258 ICPACGVQ 265 (410)
Q Consensus 258 ~C~VCg~~ 265 (410)
+|..||.+
T Consensus 14 fC~~CG~~ 21 (50)
T PF12773_consen 14 FCPHCGTP 21 (50)
T ss_pred CChhhcCC
Confidence 45555543
No 82
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=34.78 E-value=26 Score=26.25 Aligned_cols=12 Identities=42% Similarity=1.295 Sum_probs=7.4
Q ss_pred CCcEEcCCCcCc
Q psy5827 295 TSDWFCPKCSKV 306 (410)
Q Consensus 295 ~~~W~Cp~C~~~ 306 (410)
+++|.||.|...
T Consensus 32 p~~w~CP~C~a~ 43 (47)
T PF00301_consen 32 PDDWVCPVCGAP 43 (47)
T ss_dssp -TT-B-TTTSSB
T ss_pred CCCCcCcCCCCc
Confidence 478999999854
No 83
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=34.58 E-value=10 Score=30.66 Aligned_cols=28 Identities=43% Similarity=0.914 Sum_probs=23.9
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccC
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV 290 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~ 290 (410)
..| .|.. .-||.|-+|+.+-|..|+|+.
T Consensus 34 ~~C-~C~L-----kAMi~Cq~CGAFCHDDCIgps 61 (69)
T PF13922_consen 34 NKC-ACSL-----KAMIMCQGCGAFCHDDCIGPS 61 (69)
T ss_pred ccc-ccch-----HHHHHHhhccchhccccccHH
Confidence 357 7877 259999999999999999986
No 84
>PF15346 ARGLU: Arginine and glutamate-rich 1
Probab=34.41 E-value=3.8e+02 Score=24.86 Aligned_cols=37 Identities=32% Similarity=0.529 Sum_probs=17.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhcch
Q psy5827 124 KIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKP 160 (410)
Q Consensus 124 ~~~~e~e~~e~~~k~k~~~~~~~~~~~~~~~~~k~~~ 160 (410)
....+++.+-.+.++++++..++.+.+.++-++..+.
T Consensus 55 ele~ek~~~l~e~r~keEeer~~~eELe~ileen~rk 91 (149)
T PF15346_consen 55 ELEREKEEALEEARRKEEEERKKREELEKILEENRRK 91 (149)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455554444444455544444443
No 85
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=33.45 E-value=8.9 Score=31.92 Aligned_cols=47 Identities=23% Similarity=0.637 Sum_probs=21.4
Q ss_pred ccccccCc----CCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGV----QDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~----~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|++||. ..+|+ .+|+|..|..-.--.|+-... ..+.-.|+.|...
T Consensus 10 qiCqiCGD~VGl~~~Ge-~FVAC~eC~fPvCr~CyEYEr--keg~q~CpqCkt~ 60 (80)
T PF14569_consen 10 QICQICGDDVGLTENGE-VFVACHECAFPVCRPCYEYER--KEGNQVCPQCKTR 60 (80)
T ss_dssp -B-SSS--B--B-SSSS-B--S-SSS-----HHHHHHHH--HTS-SB-TTT--B
T ss_pred cccccccCccccCCCCC-EEEEEcccCCccchhHHHHHh--hcCcccccccCCC
Confidence 36999976 34566 889999999877777764432 2467889999843
No 86
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=32.38 E-value=35 Score=34.99 Aligned_cols=29 Identities=28% Similarity=0.717 Sum_probs=20.1
Q ss_pred cccccccCcCC---------CCCCCeeeccCCCCcccc
Q psy5827 256 VWICPACGVQD---------DGSLPMIGCDGCDAWYHW 284 (410)
Q Consensus 256 ~~~C~VCg~~d---------dgd~~mI~CD~C~~W~H~ 284 (410)
..+|+|||..- .++.-++.|..|...+|+
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~ 224 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHV 224 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccc
Confidence 35899999841 122368889999966664
No 87
>KOG1080|consensus
Probab=32.29 E-value=36 Score=40.05 Aligned_cols=50 Identities=26% Similarity=0.587 Sum_probs=41.3
Q ss_pred ccccccCcCCCC-CCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddg-d~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|.+|+....+ ...++.||.|....|..|.|.........|.|..|...
T Consensus 574 ~~c~~~~~~~~~~~n~~~~~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 624 (1005)
T KOG1080|consen 574 ERCAVCRDDEDWEKNVSIICDRCTRSVHSECYGNLKSYDGTSWVCDSCETL 624 (1005)
T ss_pred ccccccccccccccceeeeeccccccCCCcccccCCCCCCCcchhhccccc
Confidence 579999875433 34789999999999999999988866678999999863
No 88
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=31.83 E-value=27 Score=23.61 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=18.5
Q ss_pred hhhhhcCCCc-c-cHHHHHhHHHHhhc
Q psy5827 371 PRQCLREGLA-P-QCEALKNTFFECKR 395 (410)
Q Consensus 371 ~~eCL~~~~l-p-eC~~l~~~~~eCKR 395 (410)
+..||.+.+. . .|..+..+|.+|+.
T Consensus 8 ~~~Cl~~n~~~~~~C~~~~~~~~~C~~ 34 (35)
T PF06747_consen 8 YLACLKENNFDWSKCRKEFKAYKECRM 34 (35)
T ss_dssp HHHHHHCH-SSTCCCHHHHHHHHHHHC
T ss_pred HHHHHHHCCCcHHhhHHHHHHHHHHhh
Confidence 4567775322 3 89999999999975
No 89
>PLN02400 cellulose synthase
Probab=31.22 E-value=34 Score=40.53 Aligned_cols=46 Identities=26% Similarity=0.686 Sum_probs=35.6
Q ss_pred cccccCc----CCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 258 ICPACGV----QDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 258 ~C~VCg~----~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.|+|||. ..+|+ ..|.|.-|..-.--.|.-- +...+.=.||.|...
T Consensus 38 iCqICGD~VG~t~dGe-~FVAC~eCaFPVCRpCYEY--ERkeGnq~CPQCkTr 87 (1085)
T PLN02400 38 ICQICGDDVGVTETGD-VFVACNECAFPVCRPCYEY--ERKDGTQCCPQCKTR 87 (1085)
T ss_pred eeeecccccCcCCCCC-EEEEEccCCCccccchhhe--ecccCCccCcccCCc
Confidence 7999987 34566 7899999998877888733 345688899999754
No 90
>PLN02436 cellulose synthase A
Probab=31.11 E-value=32 Score=40.72 Aligned_cols=46 Identities=28% Similarity=0.723 Sum_probs=35.7
Q ss_pred cccccCcC----CCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 258 ICPACGVQ----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 258 ~C~VCg~~----ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.|+|||.. .+|+ ..|.|.-|..-.--.|..- +...+.=.||.|...
T Consensus 38 iCqICGD~Vg~t~dGe-~FVACn~C~fpvCr~Cyey--er~eg~~~Cpqckt~ 87 (1094)
T PLN02436 38 TCQICGDEIELTVDGE-PFVACNECAFPVCRPCYEY--ERREGNQACPQCKTR 87 (1094)
T ss_pred cccccccccCcCCCCC-EEEeeccCCCccccchhhh--hhhcCCccCcccCCc
Confidence 79999873 3556 7899999998888888833 344678899999854
No 91
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=30.87 E-value=44 Score=34.19 Aligned_cols=39 Identities=31% Similarity=0.812 Sum_probs=25.9
Q ss_pred cccccccCcCC----------CCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcC
Q psy5827 256 VWICPACGVQD----------DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 305 (410)
Q Consensus 256 ~~~C~VCg~~d----------dgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~ 305 (410)
-.+|+|||..- .++.-++.|..|..-+|+. .-.|+.|..
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~-----------R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV-----------RVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc-----------CccCCCCCC
Confidence 35899999831 1223688999999666632 345777764
No 92
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=30.73 E-value=35 Score=25.88 Aligned_cols=12 Identities=42% Similarity=1.254 Sum_probs=9.6
Q ss_pred CCcEEcCCCcCc
Q psy5827 295 TSDWFCPKCSKV 306 (410)
Q Consensus 295 ~~~W~Cp~C~~~ 306 (410)
+.+|.||.|...
T Consensus 32 p~~w~CP~C~a~ 43 (50)
T cd00730 32 PDDWVCPVCGAG 43 (50)
T ss_pred CCCCCCCCCCCc
Confidence 469999999743
No 93
>KOG2041|consensus
Probab=30.73 E-value=43 Score=38.36 Aligned_cols=47 Identities=26% Similarity=0.706 Sum_probs=33.9
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
..|.+||.+-++. -++|.-|..-| -.|+.-... -.+..|+|+.|.-.
T Consensus 1118 vdc~~cg~~i~~~--~~~c~ec~~kf-P~CiasG~pIt~~~fWlC~~CkH~ 1165 (1189)
T KOG2041|consen 1118 VDCSVCGAKIDPY--DLQCSECQTKF-PVCIASGRPITDNIFWLCPRCKHR 1165 (1189)
T ss_pred eeeeecCCcCCcc--CCCChhhcCcC-ceeeccCCccccceEEEccccccc
Confidence 5699999976654 67999999765 577644333 33458999999844
No 94
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=29.78 E-value=13 Score=29.90 Aligned_cols=25 Identities=24% Similarity=0.824 Sum_probs=15.4
Q ss_pred ccccccCcC---------CCCCCCeeeccCCCCc
Q psy5827 257 WICPACGVQ---------DDGSLPMIGCDGCDAW 281 (410)
Q Consensus 257 ~~C~VCg~~---------ddgd~~mI~CD~C~~W 281 (410)
+.|.+|+.. +..+..+|.|++|..|
T Consensus 5 FTC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~ 38 (66)
T PF05180_consen 5 FTCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNR 38 (66)
T ss_dssp EEETTTTEEEEEEEEHHHHHTSEEEEE-TTS--E
T ss_pred EEcCCCCCccceeeCHHHHhCCeEEEECCCCcce
Confidence 568888762 3334489999999986
No 95
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=29.59 E-value=23 Score=28.33 Aligned_cols=44 Identities=20% Similarity=0.480 Sum_probs=26.6
Q ss_pred cccccCcCCCC---------CCCeeeccCCCCcccceecccCCCCCCCcEEcCCCc
Q psy5827 258 ICPACGVQDDG---------SLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCS 304 (410)
Q Consensus 258 ~C~VCg~~ddg---------d~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~ 304 (410)
.|.||..+..+ +...|.=..|+-.||..|+..=.. ....||.|+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~---~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLK---QNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHT---TSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHh---cCCcCCCCC
Confidence 39899875421 113444456999999999863222 123888885
No 96
>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]
Probab=29.44 E-value=4.4e+02 Score=27.67 Aligned_cols=9 Identities=11% Similarity=-0.090 Sum_probs=3.3
Q ss_pred ccccccccc
Q psy5827 75 SEDLGEIKK 83 (410)
Q Consensus 75 ~~~~~~~~~ 83 (410)
+.|--.||.
T Consensus 49 vi~AVmVDp 57 (387)
T COG3064 49 VIDAVMVDP 57 (387)
T ss_pred eeeeeEeCc
Confidence 333333443
No 97
>PF09416 UPF1_Zn_bind: RNA helicase (UPF2 interacting domain); InterPro: IPR018999 UPF1 (or regulator of nonsense transcripts 1 homologue) is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) []. ; GO: 0003677 DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, 0005737 cytoplasm; PDB: 2IYK_B 2WJY_A 2WJV_A 2XZL_A.
Probab=29.21 E-value=26 Score=32.45 Aligned_cols=24 Identities=29% Similarity=1.115 Sum_probs=15.1
Q ss_pred ccccCcCCCCCCCeeeccCCCCcccc
Q psy5827 259 CPACGVQDDGSLPMIGCDGCDAWYHW 284 (410)
Q Consensus 259 C~VCg~~ddgd~~mI~CD~C~~W~H~ 284 (410)
|..||..+... .+.|..|+.||--
T Consensus 3 C~YCG~~~p~~--vv~C~~c~kWFCN 26 (152)
T PF09416_consen 3 CAYCGIHDPSC--VVKCNTCNKWFCN 26 (152)
T ss_dssp -TTT----CCC--EEEETTTTEEEES
T ss_pred ccccCCCCccc--EeEcCCCCcEeec
Confidence 77788754554 8999999999843
No 98
>KOG1705|consensus
Probab=28.40 E-value=28 Score=30.02 Aligned_cols=51 Identities=20% Similarity=0.479 Sum_probs=32.8
Q ss_pred cccccCcCCCCCCCeeeccCCC-CcccceecccCCCCCCCcEEcCCCcCccc
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCD-AWYHWVCVGLVAEPETSDWFCPKCSKVDE 308 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~-~W~H~~Clgi~~~~~~~~W~Cp~C~~~~~ 308 (410)
.|.+|..--......-.||.|. ..|...|+--......+.|||..|.+..-
T Consensus 29 kC~ICDS~VRP~tlVRiC~eC~~Gs~q~~ciic~~~gV~d~~yc~ectr~ek 80 (110)
T KOG1705|consen 29 KCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGVGVSDAYYCKECTRQEK 80 (110)
T ss_pred cccccccccccceeeeeehhcCCccccCceEEecCCcccchHHHHHHHhhcc
Confidence 5778866333332455699998 56777776444343457899999986543
No 99
>PLN03086 PRLI-interacting factor K; Provisional
Probab=28.07 E-value=2.2e+02 Score=31.75 Aligned_cols=10 Identities=40% Similarity=0.521 Sum_probs=6.3
Q ss_pred HHHHhcCccc
Q psy5827 355 KLCLLETDCV 364 (410)
Q Consensus 355 ~~Cl~~S~Cv 364 (410)
++|+..+|+-
T Consensus 243 aVsiieTDi~ 252 (567)
T PLN03086 243 SVSVLETDIE 252 (567)
T ss_pred eeEEEeCceE
Confidence 5666666664
No 100
>KOG3634|consensus
Probab=27.31 E-value=3.1e+02 Score=28.81 Aligned_cols=6 Identities=50% Similarity=0.722 Sum_probs=2.6
Q ss_pred cccccc
Q psy5827 39 MSSKEK 44 (410)
Q Consensus 39 ~~~~~~ 44 (410)
||..|.
T Consensus 10 msd~EE 15 (361)
T KOG3634|consen 10 MSDEEE 15 (361)
T ss_pred cccccc
Confidence 444443
No 101
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=27.23 E-value=36 Score=40.26 Aligned_cols=46 Identities=30% Similarity=0.747 Sum_probs=35.7
Q ss_pred cccccCcC----CCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 258 ICPACGVQ----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 258 ~C~VCg~~----ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.|+|||.. .+|+ ..|.|.-|..-.--.|.-- +...+.=.||.|...
T Consensus 19 iCqICGD~vg~~~~Ge-~FVAC~eC~FPVCrpCYEY--Er~eG~q~CPqCktr 68 (1079)
T PLN02638 19 VCQICGDNVGKTVDGE-PFVACDVCAFPVCRPCYEY--ERKDGNQSCPQCKTK 68 (1079)
T ss_pred eeeecccccCcCCCCC-EEEEeccCCCccccchhhh--hhhcCCccCCccCCc
Confidence 69999873 4566 7899999998888888833 344678899999854
No 102
>KOG2689|consensus
Probab=26.95 E-value=2.6e+02 Score=28.61 Aligned_cols=6 Identities=17% Similarity=0.096 Sum_probs=2.7
Q ss_pred CCCccc
Q psy5827 278 CDAWYH 283 (410)
Q Consensus 278 C~~W~H 283 (410)
|+.-||
T Consensus 249 ~P~~f~ 254 (290)
T KOG2689|consen 249 DPYSFH 254 (290)
T ss_pred CCeeee
Confidence 444444
No 103
>PF08991 DUF1903: Domain of unknown function (DUF1903); InterPro: IPR009069 The mature-T-cell-proliferation (MTCP1) putative oncogene was identified for its involvement in t(X:14)(q28;q11)-associated T-cell leukaemia []. MTCP1 is alternatively spliced to produce two completely distinct proteins: the small mitochondrial protein, p8MTCP1, and the protein p13MTCP1, which shows strong homology to another oncogene product, p14TCL1. While p13MTCP1 expression appears to be restricted to mature T-cell proliferation with t(X,14) translocations, the mitochondrial p8MTCP1 is expressed at low levels in most human tissues, and is over-expressed in the proliferating T-cells. The biological function of p8MTCP1 is still unknown, but it appears to play a role in oncogenesis. The structure of p8MTCP1 reveals a disulphide-rich, irregular array of three helices [].; PDB: 2HP8_A 1EI0_A 1HP8_A.
Probab=26.07 E-value=57 Score=26.23 Aligned_cols=32 Identities=19% Similarity=0.669 Sum_probs=20.8
Q ss_pred hhhhhc-CCCcc-cHHHHHhHHHHhhcCCcCCcc
Q psy5827 371 PRQCLR-EGLAP-QCEALKNTFFECKRSLLDNRT 402 (410)
Q Consensus 371 ~~eCL~-~~~lp-eC~~l~~~~~eCKRg~lD~r~ 402 (410)
.+.||. +++.+ .|..+..+|.+|.....+-|.
T Consensus 11 iq~CL~~N~Yd~~kC~~~i~~l~~Cck~~y~~~~ 44 (67)
T PF08991_consen 11 IQKCLQRNNYDESKCQDYIDALYECCKKFYEQRG 44 (67)
T ss_dssp HHHHHHHTTT-CCCTHHHHHHHHHHHTTS-----
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHccc
Confidence 345665 45566 999999999999988866553
No 104
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative.
Probab=26.01 E-value=42 Score=30.29 Aligned_cols=25 Identities=32% Similarity=0.862 Sum_probs=18.4
Q ss_pred ccccccCcCCC-----CCCCeeeccCCCCc
Q psy5827 257 WICPACGVQDD-----GSLPMIGCDGCDAW 281 (410)
Q Consensus 257 ~~C~VCg~~dd-----gd~~mI~CD~C~~W 281 (410)
+.|..|+.|+. +...++.|..|+.+
T Consensus 98 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 127 (133)
T TIGR00311 98 VICRECNRPDTRIIKEGRVSLLKCEACGAK 127 (133)
T ss_pred EECCCCCCCCcEEEEeCCeEEEecccCCCC
Confidence 67999999874 23346788888865
No 105
>PHA02862 5L protein; Provisional
Probab=25.65 E-value=18 Score=33.45 Aligned_cols=54 Identities=20% Similarity=0.292 Sum_probs=36.7
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcccCchh
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDEGSRK 312 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~~~k~k 312 (410)
.|.+|...++.+..--.|-+-..|.|..|+.-=.. ....-.|+.|.....-+..
T Consensus 4 iCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn-~S~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 4 ICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWIN-YSKKKECNLCKTKYNIKKT 57 (156)
T ss_pred EEEEecCcCCCCcccccccCcchhHHHHHHHHHHh-cCCCcCccCCCCeEEEEEc
Confidence 58889887655444555777889999999853222 2356789999876544333
No 106
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Probab=25.00 E-value=45 Score=30.27 Aligned_cols=27 Identities=37% Similarity=0.876 Sum_probs=19.8
Q ss_pred cccccccCcCCC-----CCCCeeeccCCCCcc
Q psy5827 256 VWICPACGVQDD-----GSLPMIGCDGCDAWY 282 (410)
Q Consensus 256 ~~~C~VCg~~dd-----gd~~mI~CD~C~~W~ 282 (410)
-+.|..|+.|+. +..+++-|+.|+.+.
T Consensus 102 yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~ 133 (138)
T PRK03988 102 YVICPECGSPDTKLIKEGRIWVLKCEACGAET 133 (138)
T ss_pred cEECCCCCCCCcEEEEcCCeEEEEcccCCCCC
Confidence 367999999874 233677799998754
No 107
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=24.68 E-value=44 Score=39.43 Aligned_cols=47 Identities=28% Similarity=0.697 Sum_probs=36.0
Q ss_pred ccccccCcC----CCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQ----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~----ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|++||.. .+|+ ..|.|.-|..-..-.|+.- +...+.=.||.|...
T Consensus 16 ~~c~iCGd~vg~~~~Ge-~FVAC~eC~fpvCr~cyey--e~~~g~~~cp~c~t~ 66 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQ-PFVACHVCGFPVCKPCYEY--ERSEGNQCCPQCNTR 66 (1044)
T ss_pred chhhccccccCcCCCCC-EEEEeccCCCccccchhhh--hhhcCCccCCccCCc
Confidence 369999873 3566 7899999998888888833 344678899999854
No 108
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=24.49 E-value=23 Score=23.63 Aligned_cols=42 Identities=19% Similarity=0.423 Sum_probs=26.7
Q ss_pred ccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcC
Q psy5827 259 CPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 305 (410)
Q Consensus 259 C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~ 305 (410)
|.+|...... .+....|+-.||..|+...... +...||.|..
T Consensus 2 C~iC~~~~~~---~~~~~~C~H~~c~~C~~~~~~~--~~~~Cp~C~~ 43 (45)
T cd00162 2 CPICLEEFRE---PVVLLPCGHVFCRSCIDKWLKS--GKNTCPLCRT 43 (45)
T ss_pred CCcCchhhhC---ceEecCCCChhcHHHHHHHHHh--CcCCCCCCCC
Confidence 7788775422 3344558888999998643221 3567888864
No 109
>KOG4628|consensus
Probab=23.77 E-value=54 Score=34.25 Aligned_cols=47 Identities=19% Similarity=0.422 Sum_probs=31.9
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
+.|.||...+..+ .-|-==-|.--||..|+.+=... ..-+||-|...
T Consensus 230 ~~CaIClEdY~~G-dklRiLPC~H~FH~~CIDpWL~~--~r~~CPvCK~d 276 (348)
T KOG4628|consen 230 DTCAICLEDYEKG-DKLRILPCSHKFHVNCIDPWLTQ--TRTFCPVCKRD 276 (348)
T ss_pred ceEEEeecccccC-CeeeEecCCCchhhccchhhHhh--cCccCCCCCCc
Confidence 4699998876444 12333568889999999764331 13479999864
No 110
>KOG2144|consensus
Probab=23.46 E-value=49 Score=34.13 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=26.2
Q ss_pred cccccccee---eccCcccccccccccchhhhhhh
Q psy5827 62 VTPMVPNIV---KVTSSEDLGEIKKDKSIKKDKKT 93 (410)
Q Consensus 62 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 93 (410)
..||||.+. |.|||+++.-|+--.+-+-||+.
T Consensus 210 mnpMvPGL~q~~KMSsSd~~SkIdllD~~~~V~kK 244 (360)
T KOG2144|consen 210 MNPMVPGLAQGEKMSSSDPLSKIDLLDEPADVNKK 244 (360)
T ss_pred cCCCCccccccCccccCCcccccccccCHHHHHHH
Confidence 579999987 99999999999877776666653
No 111
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=23.05 E-value=48 Score=21.16 Aligned_cols=21 Identities=29% Similarity=0.839 Sum_probs=12.2
Q ss_pred cccccCcCCCCCCCeeeccCCCC
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDA 280 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~ 280 (410)
+|+.||....++ ...|-.|+.
T Consensus 1 ~Cp~CG~~~~~~--~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIEDD--AKFCPNCGT 21 (23)
T ss_pred CCcccCCCCCCc--CcchhhhCC
Confidence 467777754443 455666653
No 112
>PLN02189 cellulose synthase
Probab=22.62 E-value=54 Score=38.76 Aligned_cols=46 Identities=26% Similarity=0.659 Sum_probs=35.8
Q ss_pred cccccCcC----CCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 258 ICPACGVQ----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 258 ~C~VCg~~----ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.|++||.. .+|+ ..|.|.-|..-.--.|.-- +...+.=.||.|...
T Consensus 36 ~C~iCgd~vg~~~~g~-~fvaC~~C~fpvCr~Cyey--er~eg~q~CpqCkt~ 85 (1040)
T PLN02189 36 VCEICGDEIGLTVDGD-LFVACNECGFPVCRPCYEY--ERREGTQNCPQCKTR 85 (1040)
T ss_pred cccccccccCcCCCCC-EEEeeccCCCccccchhhh--hhhcCCccCcccCCc
Confidence 69999884 4566 7899999998888888833 344678899999854
No 113
>PRK11595 DNA utilization protein GntX; Provisional
Probab=22.47 E-value=36 Score=32.63 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=16.5
Q ss_pred ccccccCcCCCCCCCeeeccCCCCccc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYH 283 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H 283 (410)
.+|.+|+.+.... ....|+.|..-++
T Consensus 6 ~~C~~C~~~~~~~-~~~lC~~C~~~l~ 31 (227)
T PRK11595 6 GLCWLCRMPLALS-HWGICSVCSRALR 31 (227)
T ss_pred CcCccCCCccCCC-CCcccHHHHhhCC
Confidence 3699999864333 2347999874443
No 114
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=22.40 E-value=45 Score=23.53 Aligned_cols=10 Identities=20% Similarity=1.016 Sum_probs=6.4
Q ss_pred CCcEEcCCCc
Q psy5827 295 TSDWFCPKCS 304 (410)
Q Consensus 295 ~~~W~Cp~C~ 304 (410)
+|.|||..|-
T Consensus 23 dG~~yC~~cG 32 (36)
T PF11781_consen 23 DGFYYCDRCG 32 (36)
T ss_pred CCEEEhhhCc
Confidence 4667776664
No 115
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=22.01 E-value=62 Score=34.74 Aligned_cols=40 Identities=18% Similarity=0.378 Sum_probs=22.6
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCC----CCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~----~~~~~W~Cp~C~~~ 306 (410)
..+.|.+|+-.++...- | .=.|++.. .-+++|.||.|...
T Consensus 424 ~~~~c~~c~~~yd~~~g----~--------~~~~~~~gt~~~~lp~~~~cp~c~~~ 467 (479)
T PRK05452 424 PRMQCSVCQWIYDPAKG----E--------PMQDVAPGTPWSEVPDNFLCPECSLG 467 (479)
T ss_pred CeEEECCCCeEECCCCC----C--------cccCCCCCCChhhCCCCCcCcCCCCc
Confidence 44678888876655400 0 00123222 23469999999854
No 116
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=21.94 E-value=64 Score=31.88 Aligned_cols=25 Identities=28% Similarity=0.769 Sum_probs=15.3
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWY 282 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~ 282 (410)
.+.|..||.... ...-.|.+|..|-
T Consensus 354 ~~~c~~cg~~~~--~~~~~c~~c~~~~ 378 (389)
T PRK11788 354 RYRCRNCGFTAR--TLYWHCPSCKAWE 378 (389)
T ss_pred CEECCCCCCCCc--cceeECcCCCCcc
Confidence 356777777422 2455677777763
No 117
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=21.24 E-value=39 Score=25.15 Aligned_cols=44 Identities=23% Similarity=0.584 Sum_probs=23.0
Q ss_pred ccccCcCCCCCCCeee-cc--CCCCcccceecccCCCCCCCcEEcCCC
Q psy5827 259 CPACGVQDDGSLPMIG-CD--GCDAWYHWVCVGLVAEPETSDWFCPKC 303 (410)
Q Consensus 259 C~VCg~~ddgd~~mI~-CD--~C~~W~H~~Clgi~~~~~~~~W~Cp~C 303 (410)
|.+|...++++..+|. |. +--.|+|..|+.-=... ...-.|+.|
T Consensus 2 CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~-~~~~~C~iC 48 (49)
T smart00744 2 CRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINE-SGNKTCEIC 48 (49)
T ss_pred ccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHH-cCCCcCCCC
Confidence 6778763333324444 32 22379999998532110 122367766
No 118
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=21.00 E-value=77 Score=24.78 Aligned_cols=14 Identities=29% Similarity=0.805 Sum_probs=10.4
Q ss_pred CCCCcEEcCCCcCc
Q psy5827 293 PETSDWFCPKCSKV 306 (410)
Q Consensus 293 ~~~~~W~Cp~C~~~ 306 (410)
...+..|||.|...
T Consensus 24 LkNfPlyCpKCK~E 37 (55)
T PF14205_consen 24 LKNFPLYCPKCKQE 37 (55)
T ss_pred eccccccCCCCCce
Confidence 34577999999864
No 119
>KOG4218|consensus
Probab=20.92 E-value=43 Score=35.17 Aligned_cols=27 Identities=26% Similarity=0.938 Sum_probs=18.6
Q ss_pred ccccccCcCCCCC-CCeeeccCCCCccc
Q psy5827 257 WICPACGVQDDGS-LPMIGCDGCDAWYH 283 (410)
Q Consensus 257 ~~C~VCg~~ddgd-~~mI~CD~C~~W~H 283 (410)
-.|+|||.--.|= .-++-|++|..+|-
T Consensus 16 ElCPVCGDkVSGYHYGLLTCESCKGFFK 43 (475)
T KOG4218|consen 16 ELCPVCGDKVSGYHYGLLTCESCKGFFK 43 (475)
T ss_pred cccccccCccccceeeeeehhhhhhHHH
Confidence 3799999742221 13788999998773
No 120
>PHA00626 hypothetical protein
Probab=20.84 E-value=85 Score=24.79 Aligned_cols=31 Identities=29% Similarity=0.834 Sum_probs=20.8
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.|+.||. + ..|.|..|..| ...|.|+.|--.
T Consensus 2 ~CP~CGS---~--~Ivrcg~cr~~-------------snrYkCkdCGY~ 32 (59)
T PHA00626 2 SCPKCGS---G--NIAKEKTMRGW-------------SDDYVCCDCGYN 32 (59)
T ss_pred CCCCCCC---c--eeeeeceeccc-------------CcceEcCCCCCe
Confidence 3777765 1 35677777665 257999999754
No 121
>COG4499 Predicted membrane protein [Function unknown]
Probab=20.67 E-value=69 Score=34.10 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=22.2
Q ss_pred cccccccccccccceeeccCcccccccccccchhhhhhh
Q psy5827 55 VKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKT 93 (410)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (410)
+.|+.|-+-..+--+--|-|-+||.--+.-+-+++.|+.
T Consensus 339 L~D~d~~~~Al~k~~eevksn~~lsg~~r~e~lk~~n~~ 377 (434)
T COG4499 339 LDDNDLTLLALTKLYEEVKSNTDLSGDKRQELLKEYNKK 377 (434)
T ss_pred CCcchhHHHHHHHHHHHHhcccCCCchHHHHHHHHHHHH
Confidence 345555544444445556666777665555666666554
No 122
>PLN02195 cellulose synthase A
Probab=20.61 E-value=67 Score=37.76 Aligned_cols=47 Identities=23% Similarity=0.617 Sum_probs=35.9
Q ss_pred ccccccCc----CCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGV----QDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~----~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|++||. ..+|+ ..|.|.-|..-.--.|..- +..+|.=.||.|...
T Consensus 7 ~~c~~cgd~~~~~~~g~-~fvaC~eC~~pvCrpCyey--er~eg~q~CpqCkt~ 57 (977)
T PLN02195 7 PICATCGEEVGVDSNGE-AFVACHECSYPLCKACLEY--EIKEGRKVCLRCGGP 57 (977)
T ss_pred ccceecccccCcCCCCC-eEEEeccCCCccccchhhh--hhhcCCccCCccCCc
Confidence 36999987 33555 7899999998888888733 344688899999754
Done!