Query psy5827
Match_columns 410
No_of_seqs 319 out of 1337
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 18:57:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5827.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5827hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lv9_A Histone-lysine N-methyl 99.4 4.6E-14 1.6E-18 117.8 3.8 61 251-313 23-83 (98)
2 2k16_A Transcription initiatio 99.4 5.3E-14 1.8E-18 111.3 2.0 55 251-306 13-68 (75)
3 1weu_A Inhibitor of growth fam 99.4 7.8E-13 2.7E-17 109.6 7.9 54 249-306 29-85 (91)
4 1wee_A PHD finger family prote 99.3 2.2E-13 7.6E-18 107.4 2.4 57 250-307 10-67 (72)
5 3o70_A PHD finger protein 13; 99.3 3.5E-13 1.2E-17 105.8 2.2 54 251-306 14-67 (68)
6 1wen_A Inhibitor of growth fam 99.3 1.4E-12 4.8E-17 103.2 5.5 54 249-306 9-65 (71)
7 2jmi_A Protein YNG1, ING1 homo 99.3 1.4E-13 4.9E-18 113.8 -0.2 51 251-305 21-75 (90)
8 3kqi_A GRC5, PHD finger protei 99.3 1.7E-13 6E-18 108.9 -0.8 56 252-308 6-63 (75)
9 1wep_A PHF8; structural genomi 99.3 1.3E-12 4.4E-17 104.7 3.9 55 254-309 10-66 (79)
10 1wew_A DNA-binding family prot 99.3 8.3E-13 2.8E-17 105.8 2.5 55 250-306 10-72 (78)
11 1we9_A PHD finger family prote 99.3 1.2E-12 4E-17 100.6 2.1 52 255-306 5-58 (64)
12 1wem_A Death associated transc 99.3 4E-13 1.4E-17 106.8 -0.6 51 255-307 15-71 (76)
13 3o7a_A PHD finger protein 13 v 99.2 8.7E-13 3E-17 98.0 0.9 49 255-305 3-51 (52)
14 2rsd_A E3 SUMO-protein ligase 99.2 3.4E-12 1.2E-16 99.7 1.8 52 252-305 6-64 (68)
15 2g6q_A Inhibitor of growth pro 99.2 2.6E-12 8.9E-17 99.2 0.5 51 251-305 6-59 (62)
16 3c6w_A P28ING5, inhibitor of g 99.2 2.9E-12 9.8E-17 98.0 0.5 50 252-305 5-57 (59)
17 1x4i_A Inhibitor of growth pro 99.2 6.4E-12 2.2E-16 99.2 2.0 50 253-306 3-55 (70)
18 2vnf_A ING 4, P29ING4, inhibit 99.2 4E-12 1.4E-16 97.4 0.4 50 252-305 6-58 (60)
19 2vpb_A Hpygo1, pygopus homolog 99.1 5.6E-12 1.9E-16 98.2 -0.4 50 255-304 7-64 (65)
20 1f62_A Transcription factor WS 99.1 2.7E-11 9.2E-16 89.1 3.0 48 258-306 2-50 (51)
21 2kgg_A Histone demethylase jar 99.1 1.8E-11 6.1E-16 91.0 0.3 47 258-304 4-52 (52)
22 2l5u_A Chromodomain-helicase-D 99.0 1.3E-10 4.3E-15 89.1 3.3 48 255-306 10-58 (61)
23 1mm2_A MI2-beta; PHD, zinc fin 99.0 3.2E-10 1.1E-14 86.9 4.7 48 255-306 8-56 (61)
24 2e6r_A Jumonji/ARID domain-con 99.0 1.4E-10 4.8E-15 95.8 2.4 50 256-306 16-66 (92)
25 2ri7_A Nucleosome-remodeling f 99.0 4.4E-11 1.5E-15 107.7 -0.9 52 254-306 6-59 (174)
26 2xb1_A Pygopus homolog 2, B-ce 99.0 7.9E-11 2.7E-15 99.5 0.4 53 256-308 3-63 (105)
27 3kv5_D JMJC domain-containing 98.9 4.6E-11 1.6E-15 124.4 -1.8 57 252-309 33-91 (488)
28 1xwh_A Autoimmune regulator; P 98.9 1.5E-10 5.1E-15 89.9 1.3 47 256-306 8-55 (66)
29 2yql_A PHD finger protein 21A; 98.9 3.1E-10 1.1E-14 85.3 2.6 47 255-305 8-55 (56)
30 2yt5_A Metal-response element- 98.9 1.9E-10 6.4E-15 88.7 1.2 53 255-308 5-63 (66)
31 2l43_A N-teminal domain from h 98.9 3.3E-10 1.1E-14 92.9 2.2 49 256-306 25-75 (88)
32 2lri_C Autoimmune regulator; Z 98.9 8.8E-10 3E-14 86.0 4.5 46 257-306 13-59 (66)
33 2ku3_A Bromodomain-containing 98.9 4E-10 1.4E-14 89.1 1.6 49 256-306 16-66 (71)
34 3asl_A E3 ubiquitin-protein li 98.9 8.2E-10 2.8E-14 87.0 3.0 47 258-305 20-68 (70)
35 2puy_A PHD finger protein 21A; 98.9 5.4E-10 1.9E-14 85.0 1.9 47 256-306 5-52 (60)
36 2e6s_A E3 ubiquitin-protein li 98.8 1.4E-09 4.6E-14 87.4 3.7 47 258-305 28-76 (77)
37 3u5n_A E3 ubiquitin-protein li 98.8 1.3E-09 4.3E-14 101.2 3.2 50 255-308 6-56 (207)
38 3kv4_A PHD finger protein 8; e 98.8 1.7E-10 5.8E-15 119.1 -3.1 56 254-310 3-60 (447)
39 1fp0_A KAP-1 corepressor; PHD 98.8 7.2E-09 2.5E-13 85.3 5.9 47 256-306 25-72 (88)
40 1wev_A Riken cDNA 1110020M19; 98.8 1.3E-09 4.5E-14 89.2 1.1 51 256-306 16-72 (88)
41 3lqh_A Histone-lysine N-methyl 98.7 1.1E-09 3.9E-14 100.9 0.3 52 258-309 4-66 (183)
42 3shb_A E3 ubiquitin-protein li 98.7 4.9E-09 1.7E-13 84.2 2.5 48 257-305 27-76 (77)
43 3o36_A Transcription intermedi 98.7 7.2E-09 2.5E-13 94.3 3.7 47 257-307 5-52 (184)
44 3ask_A E3 ubiquitin-protein li 98.6 1E-08 3.4E-13 97.4 3.0 48 257-305 175-224 (226)
45 2kwj_A Zinc finger protein DPF 98.6 9.1E-09 3.1E-13 87.6 1.6 47 258-305 60-107 (114)
46 4gne_A Histone-lysine N-methyl 98.6 1.9E-08 6.3E-13 85.6 3.0 45 255-304 14-60 (107)
47 3v43_A Histone acetyltransfera 98.5 3.9E-08 1.3E-12 83.3 4.0 48 258-305 63-111 (112)
48 2ysm_A Myeloid/lymphoid or mix 98.5 4.5E-08 1.5E-12 82.4 2.3 50 258-308 56-106 (111)
49 2ro1_A Transcription intermedi 98.4 8E-08 2.7E-12 88.4 3.2 46 258-307 4-50 (189)
50 3pur_A Lysine-specific demethy 98.4 6.5E-08 2.2E-12 101.4 0.9 50 262-311 48-99 (528)
51 2ysm_A Myeloid/lymphoid or mix 98.1 1.8E-06 6.1E-11 72.6 3.9 47 257-304 8-55 (111)
52 2lbm_A Transcriptional regulat 98.1 1.5E-06 5E-11 77.3 2.8 48 255-306 62-117 (142)
53 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.7 7E-06 2.4E-10 69.1 0.4 37 272-308 2-46 (140)
54 3ql9_A Transcriptional regulat 97.6 1.4E-05 4.8E-10 70.0 1.3 49 255-307 56-112 (129)
55 3v43_A Histone acetyltransfera 97.6 1.2E-05 4E-10 68.1 0.5 48 257-305 6-63 (112)
56 3rsn_A SET1/ASH2 histone methy 97.6 4.4E-05 1.5E-09 70.1 3.9 51 256-307 5-60 (177)
57 4bbq_A Lysine-specific demethy 97.5 2.8E-05 9.6E-10 65.5 1.8 38 270-307 73-115 (117)
58 2kwj_A Zinc finger protein DPF 97.4 2.3E-05 7.9E-10 66.5 -0.5 46 258-304 3-59 (114)
59 1wil_A KIAA1045 protein; ring 96.3 0.0017 5.7E-08 53.1 2.6 50 257-308 16-78 (89)
60 3a1b_A DNA (cytosine-5)-methyl 91.2 0.065 2.2E-06 48.3 1.5 49 255-307 78-135 (159)
61 2pv0_B DNA (cytosine-5)-methyl 89.8 0.087 3E-06 53.5 1.1 49 255-307 92-149 (386)
62 2ysl_A Tripartite motif-contai 85.6 0.71 2.4E-05 34.3 3.7 47 256-306 20-66 (73)
63 1iym_A EL5; ring-H2 finger, ub 82.5 0.88 3E-05 32.0 2.9 47 257-306 6-52 (55)
64 2lq6_A Bromodomain-containing 81.5 0.54 1.8E-05 38.0 1.6 32 255-288 16-49 (87)
65 2kiz_A E3 ubiquitin-protein li 79.0 0.58 2E-05 34.6 0.9 47 256-306 14-60 (69)
66 2d8s_A Cellular modulator of i 78.7 1.1 3.9E-05 35.2 2.6 50 258-308 17-69 (80)
67 2ect_A Ring finger protein 126 78.5 1.5 5.1E-05 33.1 3.2 48 256-307 15-62 (78)
68 2ct0_A Non-SMC element 1 homol 78.3 1.9 6.6E-05 33.8 3.8 48 255-306 14-61 (74)
69 1weq_A PHD finger protein 7; s 76.8 5 0.00017 32.5 5.9 36 271-308 45-81 (85)
70 3k1l_B Fancl; UBC, ring, RWD, 76.5 1.5 5.1E-05 44.4 3.3 52 255-306 307-370 (381)
71 4gne_A Histone-lysine N-methyl 76.5 1.6 5.5E-05 36.7 3.0 29 272-300 69-98 (107)
72 2ct2_A Tripartite motif protei 76.4 1.1 3.9E-05 34.2 2.0 50 256-306 15-65 (88)
73 2ysj_A Tripartite motif-contai 74.6 1.3 4.6E-05 32.0 1.9 44 256-303 20-63 (63)
74 2ecj_A Tripartite motif-contai 74.2 3 0.0001 29.3 3.6 44 256-303 15-58 (58)
75 2l7p_A Histone-lysine N-methyl 72.4 0.97 3.3E-05 37.8 0.7 31 271-302 27-58 (100)
76 2e61_A Zinc finger CW-type PWW 72.3 2.6 8.8E-05 32.9 3.0 31 271-302 17-49 (69)
77 2ecm_A Ring finger and CHY zin 65.8 1.8 6.1E-05 30.3 0.8 47 257-306 6-52 (55)
78 1x4j_A Ring finger protein 38; 64.4 1.9 6.6E-05 32.4 0.8 47 257-307 24-70 (75)
79 2l0b_A E3 ubiquitin-protein li 63.6 2.5 8.6E-05 33.3 1.4 46 257-306 41-86 (91)
80 3nw0_A Non-structural maintena 63.1 3.5 0.00012 38.9 2.5 47 256-306 180-226 (238)
81 2ep4_A Ring finger protein 24; 62.2 2.6 8.9E-05 31.4 1.2 46 257-306 16-61 (74)
82 1vyx_A ORF K3, K3RING; zinc-bi 58.0 3.4 0.00012 30.7 1.1 47 257-306 7-56 (60)
83 2egp_A Tripartite motif-contai 57.9 10 0.00035 28.2 3.9 48 256-307 12-63 (79)
84 1e8j_A Rubredoxin; iron-sulfur 57.9 8.9 0.0003 28.1 3.4 42 257-306 4-45 (52)
85 1f5n_A Interferon-induced guan 57.7 37 0.0013 36.0 9.4 57 121-177 485-541 (592)
86 2d8t_A Dactylidin, ring finger 57.5 6.9 0.00024 29.0 2.8 43 257-306 16-58 (71)
87 1v5n_A PDI-like hypothetical p 56.4 5.4 0.00018 32.1 2.2 34 257-292 48-81 (89)
88 1hp8_A HU-P8; leukemia, cystei 55.3 7.1 0.00024 30.4 2.6 32 370-401 13-46 (68)
89 1v87_A Deltex protein 2; ring- 54.5 4.3 0.00015 32.8 1.3 51 258-308 27-93 (114)
90 2ecy_A TNF receptor-associated 54.1 7 0.00024 28.4 2.3 45 256-306 15-59 (66)
91 2ecv_A Tripartite motif-contai 53.3 7.5 0.00026 29.1 2.4 48 256-307 19-69 (85)
92 2csy_A Zinc finger protein 183 52.6 3.6 0.00012 31.3 0.5 46 255-307 14-59 (81)
93 1jm7_A BRCA1, breast cancer ty 52.0 4.1 0.00014 32.6 0.8 46 257-306 22-67 (112)
94 2yur_A Retinoblastoma-binding 51.8 6.4 0.00022 29.5 1.8 48 255-306 14-61 (74)
95 2kn9_A Rubredoxin; metalloprot 51.7 5.4 0.00019 32.1 1.4 44 255-306 26-69 (81)
96 2ecw_A Tripartite motif-contai 50.6 12 0.0004 27.9 3.2 47 256-306 19-68 (85)
97 4rxn_A Rubredoxin; electron tr 49.7 7.5 0.00026 28.9 1.8 13 294-306 33-45 (54)
98 4bbq_A Lysine-specific demethy 47.8 2.2 7.4E-05 35.3 -1.6 34 258-305 9-42 (117)
99 2ecl_A Ring-box protein 2; RNF 46.8 4.7 0.00016 31.1 0.3 46 258-306 17-73 (81)
100 1bor_A Transcription factor PM 46.3 14 0.00049 26.2 2.9 43 255-307 5-47 (56)
101 2ea6_A Ring finger protein 4; 45.7 5 0.00017 29.0 0.3 48 256-306 15-65 (69)
102 3l11_A E3 ubiquitin-protein li 44.7 13 0.00045 30.0 2.8 46 256-307 15-60 (115)
103 1s24_A Rubredoxin 2; electron 41.8 7.8 0.00027 31.5 0.9 44 255-306 34-77 (87)
104 1e4u_A Transcriptional repress 41.6 20 0.0007 27.7 3.3 49 257-308 12-61 (78)
105 1dx8_A Rubredoxin; electron tr 41.3 11 0.00039 29.2 1.8 43 256-306 7-49 (70)
106 2djb_A Polycomb group ring fin 41.3 15 0.0005 27.2 2.3 46 255-306 14-59 (72)
107 1yk4_A Rubredoxin, RD; electro 40.6 11 0.00038 27.6 1.5 12 295-306 33-44 (52)
108 2ckl_B Ubiquitin ligase protei 39.7 5.8 0.0002 34.3 -0.2 47 256-307 54-100 (165)
109 1weo_A Cellulose synthase, cat 39.1 6.6 0.00023 32.3 0.1 47 257-306 17-67 (93)
110 2v3b_B Rubredoxin 2, rubredoxi 38.8 10 0.00036 28.1 1.1 13 294-306 33-45 (55)
111 2jwo_A RAG-2, V(D)J recombinat 38.4 17 0.0006 29.0 2.4 52 251-302 7-75 (82)
112 2a20_A Regulating synaptic mem 36.2 11 0.00039 28.7 1.0 50 257-306 10-60 (62)
113 3dpl_R Ring-box protein 1; ubi 35.6 8.8 0.0003 31.6 0.3 46 258-306 39-98 (106)
114 4a0k_B E3 ubiquitin-protein li 35.6 9.1 0.00031 32.3 0.4 46 258-306 50-109 (117)
115 2enn_A NPKC-theta, protein kin 34.8 19 0.00064 27.9 2.1 35 255-289 33-68 (77)
116 2lk0_A RNA-binding protein 5; 34.4 15 0.00052 24.2 1.3 15 294-308 2-16 (32)
117 2yuu_A NPKC-delta, protein kin 34.4 23 0.00078 27.7 2.6 35 255-289 27-62 (83)
118 1ptq_A Protein kinase C delta 33.5 19 0.00066 25.0 1.8 34 256-289 11-45 (50)
119 1t1h_A Gspef-atpub14, armadill 33.4 13 0.00046 27.6 1.0 45 256-306 8-52 (78)
120 4ayc_A E3 ubiquitin-protein li 32.8 13 0.00044 31.3 0.9 43 258-307 55-97 (138)
121 3knv_A TNF receptor-associated 31.7 8.1 0.00028 33.1 -0.5 46 255-306 30-75 (141)
122 3ztg_A E3 ubiquitin-protein li 31.6 13 0.00046 28.6 0.8 47 256-306 13-59 (92)
123 3lrq_A E3 ubiquitin-protein li 30.9 7.8 0.00027 30.9 -0.7 47 256-307 22-68 (100)
124 2js4_A UPF0434 protein BB2007; 30.6 18 0.00062 28.0 1.3 30 255-284 7-38 (70)
125 2pk7_A Uncharacterized protein 29.8 21 0.00071 27.6 1.6 29 256-284 8-38 (69)
126 2e2z_A TIM15; protein import, 29.6 9.6 0.00033 31.8 -0.4 27 256-282 13-48 (100)
127 2jr6_A UPF0434 protein NMA0874 29.3 22 0.00076 27.4 1.6 30 255-284 7-38 (68)
128 1ei0_A P8MTCP1; helix-turn-hel 29.2 32 0.0011 23.6 2.3 26 370-395 9-36 (38)
129 2enz_A NPKC-theta, protein kin 29.0 31 0.0011 25.5 2.4 34 256-289 23-57 (65)
130 3fl2_A E3 ubiquitin-protein li 27.9 12 0.0004 30.8 -0.2 46 257-308 53-98 (124)
131 2hf1_A Tetraacyldisaccharide-1 27.7 21 0.00073 27.5 1.3 29 256-284 8-38 (68)
132 1faq_A RAF-1; transferase, ser 27.1 29 0.00098 24.3 1.8 31 256-289 14-44 (52)
133 2jny_A Uncharacterized BCR; st 26.6 23 0.0008 27.2 1.3 30 255-284 9-40 (67)
134 2eli_A Protein kinase C alpha 26.4 37 0.0012 26.7 2.5 35 255-289 27-62 (85)
135 2fiy_A Protein FDHE homolog; F 26.3 23 0.00077 34.7 1.5 40 256-306 182-231 (309)
136 2fnf_X Putative RAS effector N 25.4 36 0.0012 26.1 2.2 33 255-289 34-66 (72)
137 1zbd_B Rabphilin-3A; G protein 25.3 35 0.0012 29.4 2.4 50 257-306 56-107 (134)
138 2k1p_A Zinc finger RAN-binding 24.5 32 0.0011 22.7 1.5 15 295-309 4-18 (33)
139 2vrw_B P95VAV, VAV1, proto-onc 24.4 43 0.0015 32.7 3.1 35 255-289 356-391 (406)
140 2ckl_A Polycomb group ring fin 24.2 20 0.00067 28.6 0.5 46 256-307 15-60 (108)
141 2y43_A E3 ubiquitin-protein li 23.7 20 0.00069 28.0 0.5 46 256-307 22-67 (99)
142 1chc_A Equine herpes virus-1 r 23.3 15 0.00051 26.5 -0.3 44 257-306 6-49 (68)
143 1y8f_A UNC-13 homolog A, MUNC1 23.2 32 0.0011 25.6 1.5 34 256-289 24-58 (66)
144 2db6_A SH3 and cysteine rich d 22.9 24 0.00083 27.0 0.8 35 255-289 27-62 (74)
145 2ecn_A Ring finger protein 141 21.9 23 0.00078 25.8 0.4 43 256-306 15-57 (70)
146 2jrp_A Putative cytoplasmic pr 21.6 39 0.0013 27.1 1.8 11 297-307 51-61 (81)
147 2xeu_A Ring finger protein 4; 21.6 13 0.00043 26.3 -1.0 46 257-306 4-53 (64)
148 3uej_A NPKC-delta, protein kin 20.9 43 0.0015 24.7 1.8 34 256-289 20-54 (65)
149 3ng2_A RNF4, snurf, ring finge 20.7 19 0.00064 26.1 -0.3 47 257-307 11-61 (71)
No 1
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.43 E-value=4.6e-14 Score=117.85 Aligned_cols=61 Identities=26% Similarity=0.679 Sum_probs=49.8
Q ss_pred CCCCCcccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcccCchhh
Q psy5827 251 GDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDEGSRKE 313 (410)
Q Consensus 251 ed~~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~~~k~k~ 313 (410)
..++++++| +|+.+++++ .||+||.|+.|||+.|+|++....++.|+|+.|.+......+.
T Consensus 23 ~~~~d~vrC-iC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~~~~~~~ 83 (98)
T 2lv9_A 23 SYGTDVTRC-ICGFTHDDG-YMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDKERA 83 (98)
T ss_dssp CCCCCBCCC-TTSCCSCSS-CEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSCCCHHHH
T ss_pred CCCCCCEEe-ECCCccCCC-cEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCCCCHHHH
Confidence 344567889 999998777 8999999999999999999877445689999999776554443
No 2
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.40 E-value=5.3e-14 Score=111.34 Aligned_cols=55 Identities=62% Similarity=1.550 Sum_probs=46.7
Q ss_pred CCCCCcccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 251 GDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 251 ed~~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
++++...+|.+|+.+++++ +||+||.|+.|||+.|+|++.. .+.+.|||+.|...
T Consensus 13 ~~~~~~~~C~~C~~~~~~~-~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~ 68 (75)
T 2k16_A 13 EWGNQIWICPGCNKPDDGS-PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANK 68 (75)
T ss_dssp SSSCEEECBTTTTBCCSSC-CEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHH
T ss_pred ccCCCCcCCCCCCCCCCCC-CEEEcCCCCcccccccCCCCccCCCCCCEEChhccCc
Confidence 3345667899999998876 8999999999999999999887 44589999999854
No 3
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.38 E-value=7.8e-13 Score=109.58 Aligned_cols=54 Identities=43% Similarity=1.120 Sum_probs=44.5
Q ss_pred CCCCCCCcccccccCcCCCCCCCeeeccC--CC-CcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 249 DTGDSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 249 eded~~~~~~C~VCg~~ddgd~~mI~CD~--C~-~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
...++++..|| +|+.++++ +||+||+ |+ .|||+.|||++..+. +.|||+.|...
T Consensus 29 ~~~d~~e~~yC-iC~~~~~g--~MI~CD~~dC~~~WfH~~CVgl~~~p~-g~W~Cp~C~~~ 85 (91)
T 1weu_A 29 MPVDPNEPTYC-LCHQVSYG--EMIGCDNPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQE 85 (91)
T ss_dssp CCCCSCCCBCS-TTCCBCCS--CCCCCSCSSCSCCCCCSTTTTCSSCCC-SSCCCTTTCCC
T ss_pred CCcCCCCCcEE-ECCCCCCC--CEeEecCCCCCCCCEecccCCcCcCCC-CCEECcCccCc
Confidence 34455677899 99999875 5999999 77 799999999987654 89999999854
No 4
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.34 E-value=2.2e-13 Score=107.39 Aligned_cols=57 Identities=32% Similarity=0.798 Sum_probs=46.6
Q ss_pred CCCCCCcccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCcc
Q psy5827 250 TGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVD 307 (410)
Q Consensus 250 ded~~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~~ 307 (410)
.+++++..+| +|+.+++++.+||+||.|..|||+.|+|++.. ..++.|+|+.|....
T Consensus 10 ~~~~~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~ 67 (72)
T 1wee_A 10 RGVDNWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67 (72)
T ss_dssp CSSCSSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHC
T ss_pred CCCCCcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCC
Confidence 3455678999 99998754448999999999999999999865 445899999998543
No 5
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.32 E-value=3.5e-13 Score=105.78 Aligned_cols=54 Identities=26% Similarity=0.612 Sum_probs=45.9
Q ss_pred CCCCCcccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 251 GDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 251 ed~~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.++.+..|| +|+.+++++ +||+||.|..|||+.|+|++....++.|+|+.|...
T Consensus 14 ~~~~~~~~C-iC~~~~~~~-~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 14 LYFQGLVTC-FCMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp CTTTTCCCS-TTCCCCTTC-CEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCCCCceEe-ECCCcCCCC-CEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 334567899 999998877 899999999999999999988744579999999743
No 6
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=99.32 E-value=1.4e-12 Score=103.22 Aligned_cols=54 Identities=43% Similarity=1.120 Sum_probs=44.3
Q ss_pred CCCCCCCcccccccCcCCCCCCCeeeccC--CC-CcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 249 DTGDSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 249 eded~~~~~~C~VCg~~ddgd~~mI~CD~--C~-~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.+.++++..|| +|+.++++ +||+||+ |+ .|||+.|||++..+. +.|||+.|...
T Consensus 9 ~~~d~~~~~~C-~C~~~~~g--~MI~CD~~~C~~~wfH~~Cvgl~~~p~-g~w~Cp~C~~~ 65 (71)
T 1wen_A 9 MPVDPNEPTYC-LCHQVSYG--EMIGCDNPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQE 65 (71)
T ss_dssp CCCCTTSCCCS-TTCCCSCS--SEECCSCSSCSCCCEETTTTTCSSCCS-SCCCCTTTSSC
T ss_pred cccCCCCCCEE-ECCCCCCC--CEeEeeCCCCCCccEecccCCcCcCCC-CCEECCCCCcc
Confidence 34455567899 99998775 5999999 77 799999999977654 89999999865
No 7
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=99.31 E-value=1.4e-13 Score=113.76 Aligned_cols=51 Identities=33% Similarity=0.979 Sum_probs=41.4
Q ss_pred CCCCCcccccccCcCCCCCCCeeeccCCC---CcccceecccCCCCCCCcEEcCC-CcC
Q psy5827 251 GDSKQVWICPACGVQDDGSLPMIGCDGCD---AWYHWVCVGLVAEPETSDWFCPK-CSK 305 (410)
Q Consensus 251 ed~~~~~~C~VCg~~ddgd~~mI~CD~C~---~W~H~~Clgi~~~~~~~~W~Cp~-C~~ 305 (410)
.++++..|| +|+.++++. ||+||+|+ .|||+.|||++..+. +.|||+. |..
T Consensus 21 ~~~~~~~yC-iC~~~~~g~--MI~CD~c~C~~eWfH~~CVgl~~~p~-~~W~Cp~cC~~ 75 (90)
T 2jmi_A 21 NNNQEEVYC-FCRNVSYGP--MVACDNPACPFEWFHYGCVGLKQAPK-GKWYCSKDCKE 75 (90)
T ss_dssp ---CCSCCS-TTTCCCSSS--EECCCSSSCSCSCEETTTSSCSSCTT-SCCCSSHHHHH
T ss_pred CCCCCCcEE-EeCCCCCCC--EEEecCCCCccccCcCccCCCCcCCC-CCccCChhhcc
Confidence 344567899 999988765 99999977 899999999987654 7999999 974
No 8
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.29 E-value=1.7e-13 Score=108.89 Aligned_cols=56 Identities=32% Similarity=0.758 Sum_probs=46.2
Q ss_pred CCCCcccccccCcCCCCCCCeeeccCCCCcccceecccCCCC--CCCcEEcCCCcCccc
Q psy5827 252 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP--ETSDWFCPKCSKVDE 308 (410)
Q Consensus 252 d~~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~--~~~~W~Cp~C~~~~~ 308 (410)
.+++..|| +|+.+++++.+||+||.|..|||+.|+|++... ..+.|+|+.|.....
T Consensus 6 ~~~~~~yC-iC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~ 63 (75)
T 3kqi_A 6 MATVPVYC-VCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHG 63 (75)
T ss_dssp TCCCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHC
T ss_pred CCCCeeEE-ECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCC
Confidence 34567899 999997755589999999999999999998773 336899999987644
No 9
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.29 E-value=1.3e-12 Score=104.75 Aligned_cols=55 Identities=29% Similarity=0.626 Sum_probs=45.4
Q ss_pred CCcccccccCcCCCCCCCeeeccCCCCcccceecccCCC--CCCCcEEcCCCcCcccC
Q psy5827 254 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEG 309 (410)
Q Consensus 254 ~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~--~~~~~W~Cp~C~~~~~~ 309 (410)
.+..|| +|+.+++++.+||+||.|..|||+.|+|++.. ...+.|+|+.|......
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 66 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFGP 66 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSCS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccCC
Confidence 356799 99999864448999999999999999999776 33579999999976543
No 10
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.28 E-value=8.3e-13 Score=105.80 Aligned_cols=55 Identities=27% Similarity=0.643 Sum_probs=45.7
Q ss_pred CCCCCCcccccccCcCCCCCCCeeecc--CCCCcccceecccCCCC------CCCcEEcCCCcCc
Q psy5827 250 TGDSKQVWICPACGVQDDGSLPMIGCD--GCDAWYHWVCVGLVAEP------ETSDWFCPKCSKV 306 (410)
Q Consensus 250 ded~~~~~~C~VCg~~ddgd~~mI~CD--~C~~W~H~~Clgi~~~~------~~~~W~Cp~C~~~ 306 (410)
..++++.+|| +|+.+++++ +||+|| .|..|||+.|||++..+ .+..|||+.|...
T Consensus 10 ~~~~~~~~~C-iC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 10 PFQPEIKVRC-VCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp SSSCCCCCCC-SSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred ccCCCCCEEe-ECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 3445578899 999996666 899999 99999999999998763 3579999999854
No 11
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.26 E-value=1.2e-12 Score=100.61 Aligned_cols=52 Identities=31% Similarity=0.700 Sum_probs=43.8
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCC--CCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~--~~~~~W~Cp~C~~~ 306 (410)
+..+|++|+++++++.+||+||.|..|||+.|+|++.. .....|+|+.|...
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45689999999864448999999999999999999876 22479999999854
No 12
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.26 E-value=4e-13 Score=106.77 Aligned_cols=51 Identities=31% Similarity=0.897 Sum_probs=43.4
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCCC------CCCcEEcCCCcCcc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP------ETSDWFCPKCSKVD 307 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~------~~~~W~Cp~C~~~~ 307 (410)
+..|| +|+.+++++ +||+||.|..|||+.|+|++... ....|+|+.|....
T Consensus 15 ~~~~C-~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 15 NALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TCCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCEE-ECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 45899 999998876 89999999999999999997652 34789999998553
No 13
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.25 E-value=8.7e-13 Score=98.01 Aligned_cols=49 Identities=29% Similarity=0.751 Sum_probs=42.6
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcC
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 305 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~ 305 (410)
+..+| +|+.+++++ +||+||.|..|||+.|+|++....++.|+|+.|..
T Consensus 3 d~~~C-~C~~~~~~~-~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTC-FCMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TCBCS-TTCCBCTTC-CEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred cCeEE-EeCCcCCCC-CEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 35689 999998876 89999999999999999998874457999999964
No 14
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.19 E-value=3.4e-12 Score=99.70 Aligned_cols=52 Identities=23% Similarity=0.620 Sum_probs=42.4
Q ss_pred CCCCcccccccCcCCCCCCCeeeccC--CCCcccceecccCCC-----CCCCcEEcCCCcC
Q psy5827 252 DSKQVWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGLVAE-----PETSDWFCPKCSK 305 (410)
Q Consensus 252 d~~~~~~C~VCg~~ddgd~~mI~CD~--C~~W~H~~Clgi~~~-----~~~~~W~Cp~C~~ 305 (410)
+++..++| +|+.+++++ +||+||+ |..|||+.|+|++.. ..+..|||+.|+.
T Consensus 6 ~~e~~v~C-~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 6 QPEAKVRC-ICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp CSSCEECC-TTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CCCCCEEe-ECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 34466899 999987777 8999995 999999999999765 2235899999974
No 15
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=99.18 E-value=2.6e-12 Score=99.18 Aligned_cols=51 Identities=41% Similarity=1.103 Sum_probs=40.5
Q ss_pred CCCCCcccccccCcCCCCCCCeeeccC--CC-CcccceecccCCCCCCCcEEcCCCcC
Q psy5827 251 GDSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSK 305 (410)
Q Consensus 251 ed~~~~~~C~VCg~~ddgd~~mI~CD~--C~-~W~H~~Clgi~~~~~~~~W~Cp~C~~ 305 (410)
.++++..|| +|+.+++| +||+||+ |+ .|||+.|||++..+ .+.|||+.|..
T Consensus 6 ~d~~e~~yC-~C~~~~~g--~MI~CD~c~C~~~WfH~~Cvgl~~~p-~~~w~Cp~C~~ 59 (62)
T 2g6q_A 6 IDPNEPTYC-LCNQVSYG--EMIGCDNEQCPIEWFHFSCVSLTYKP-KGKWYCPKCRG 59 (62)
T ss_dssp ----CCEET-TTTEECCS--EEEECSCTTCSSCEEETGGGTCSSCC-SSCCCCHHHHT
T ss_pred cCCCCCcEE-ECCCCCCC--CeeeeeCCCCCcccEecccCCcCcCC-CCCEECcCccc
Confidence 345567899 99998776 4999999 55 99999999998765 48999999974
No 16
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=99.17 E-value=2.9e-12 Score=97.98 Aligned_cols=50 Identities=42% Similarity=1.177 Sum_probs=40.5
Q ss_pred CCCCcccccccCcCCCCCCCeeeccC--CC-CcccceecccCCCCCCCcEEcCCCcC
Q psy5827 252 DSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSK 305 (410)
Q Consensus 252 d~~~~~~C~VCg~~ddgd~~mI~CD~--C~-~W~H~~Clgi~~~~~~~~W~Cp~C~~ 305 (410)
++++..|| +|+.+++| .||+||+ |+ .|||+.|+|++..+. +.|||+.|..
T Consensus 5 d~~e~~yC-~C~~~~~g--~mi~CD~~~C~~~wfH~~Cvgl~~~p~-~~w~Cp~C~~ 57 (59)
T 3c6w_A 5 GSNEPTYC-LCHQVSYG--EMIGCDNPDCPIEWFHFACVDLTTKPK-GKWFCPRCVQ 57 (59)
T ss_dssp ---CCEET-TTTEECCS--EEEECSCTTCSSCEEETGGGTCSSCCS-SCCCCHHHHC
T ss_pred CCCCCcEE-ECCCCCCC--CeeEeeCCCCCCCCEecccCCcccCCC-CCEECcCccC
Confidence 44567899 99999875 4999999 77 799999999987654 7999999974
No 17
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=6.4e-12 Score=99.17 Aligned_cols=50 Identities=40% Similarity=1.097 Sum_probs=42.1
Q ss_pred CCCcccccccCcCCCCCCCeeeccCCC---CcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 253 SKQVWICPACGVQDDGSLPMIGCDGCD---AWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 253 ~~~~~~C~VCg~~ddgd~~mI~CD~C~---~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
+++..|| +|+.++++ +||+||+|+ .|||+.|||++..+ .+.|||+.|...
T Consensus 3 ~~~~~yC-~C~~~~~g--~MI~CD~cdC~~~WfH~~Cvgl~~~p-~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 3 SGSSGYC-ICNQVSYG--EMVGCDNQDCPIEWFHYGCVGLTEAP-KGKWYCPQCTAA 55 (70)
T ss_dssp CSCCCCS-TTSCCCCS--SEECCSCTTCSCCCEEHHHHTCSSCC-SSCCCCHHHHHH
T ss_pred CCCCeEE-EcCCCCCC--CEeEeCCCCCCccCCcccccccCcCC-CCCEECCCCCcc
Confidence 4466799 99999766 599999975 89999999998764 589999999854
No 18
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=99.15 E-value=4e-12 Score=97.37 Aligned_cols=50 Identities=46% Similarity=1.263 Sum_probs=40.2
Q ss_pred CCCCcccccccCcCCCCCCCeeeccC--CC-CcccceecccCCCCCCCcEEcCCCcC
Q psy5827 252 DSKQVWICPACGVQDDGSLPMIGCDG--CD-AWYHWVCVGLVAEPETSDWFCPKCSK 305 (410)
Q Consensus 252 d~~~~~~C~VCg~~ddgd~~mI~CD~--C~-~W~H~~Clgi~~~~~~~~W~Cp~C~~ 305 (410)
++++..|| +|+.+++| .||+||+ |+ .|||+.|+|++..+. +.|||+.|..
T Consensus 6 d~~e~~~C-~C~~~~~g--~mi~CD~cdC~~~wfH~~Cvgl~~~p~-g~w~C~~C~~ 58 (60)
T 2vnf_A 6 DPNEPTYC-LCHQVSYG--EMIGCDNPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQ 58 (60)
T ss_dssp ---CCEET-TTTEECCS--EEEECSCTTCSSCEEETGGGTCSSCCS-SCCCCHHHHC
T ss_pred CCCCCCEE-ECCCcCCC--CEEEeCCCCCCCceEehhcCCCCcCCC-CCEECcCccC
Confidence 45567899 99998775 4999999 66 899999999877654 8999999974
No 19
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=99.11 E-value=5.6e-12 Score=98.23 Aligned_cols=50 Identities=26% Similarity=0.824 Sum_probs=41.8
Q ss_pred CcccccccCcCCCCCCCeeecc-CCCCcccceecccCCC-------CCCCcEEcCCCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCD-GCDAWYHWVCVGLVAE-------PETSDWFCPKCS 304 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD-~C~~W~H~~Clgi~~~-------~~~~~W~Cp~C~ 304 (410)
.+..|.+|+++++++.+||+|| .|..|||+.|+|++.. .+...|+|+.|.
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 4457999999987767999999 9999999999999874 244699999985
No 20
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=99.11 E-value=2.7e-11 Score=89.14 Aligned_cols=48 Identities=25% Similarity=0.751 Sum_probs=41.1
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
+|.+|+..++++ .||.||+|+.|||+.|++++.. .+.+.|||+.|...
T Consensus 2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 589999987666 7999999999999999987665 55689999999753
No 21
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.06 E-value=1.8e-11 Score=90.99 Aligned_cols=47 Identities=36% Similarity=0.957 Sum_probs=38.8
Q ss_pred cccccCcCCCCCCCeeecc-CCCCcccceecccCCC-CCCCcEEcCCCc
Q psy5827 258 ICPACGVQDDGSLPMIGCD-GCDAWYHWVCVGLVAE-PETSDWFCPKCS 304 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD-~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~ 304 (410)
.|.+|++|++++.+||+|| .|+.|||+.|+|++.. ...+.|+|+.|.
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4669999987655899999 8999999999999865 223789999995
No 22
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=99.01 E-value=1.3e-10 Score=89.13 Aligned_cols=48 Identities=35% Similarity=0.805 Sum_probs=40.3
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
+..+|.+|+. .+ .||+||.|+.|||+.|++++.. .+.+.|||+.|...
T Consensus 10 ~~~~C~vC~~--~g--~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQ--GG--EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSC--CS--SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCC--CC--cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 4458999997 33 4999999999999999999765 55689999999854
No 23
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=98.99 E-value=3.2e-10 Score=86.88 Aligned_cols=48 Identities=27% Similarity=0.805 Sum_probs=39.9
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
+..+|.+|+. .+ .||+||.|+.+||+.|++++.. .+.+.|||+.|...
T Consensus 8 ~~~~C~vC~~--~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKD--GG--ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCC--CS--SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCC--CC--CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4457999986 33 4999999999999999998766 55689999999865
No 24
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.4e-10 Score=95.82 Aligned_cols=50 Identities=34% Similarity=0.798 Sum_probs=42.4
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
...|.+|+..++.+ .||+||.|+.|||+.|++++.. .+.+.|||+.|...
T Consensus 16 ~~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 16 SYICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 34799999977655 7999999999999999998766 55689999999743
No 25
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.97 E-value=4.4e-11 Score=107.69 Aligned_cols=52 Identities=35% Similarity=0.915 Sum_probs=42.8
Q ss_pred CCcccccccCcCCCCCCCeeeccCCCCcccceecccCCC--CCCCcEEcCCCcCc
Q psy5827 254 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKV 306 (410)
Q Consensus 254 ~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~--~~~~~W~Cp~C~~~ 306 (410)
++..+| +|+.+++++.+||+||.|+.|||+.|+|++.. ...+.|+|+.|...
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 356799 99998764448999999999999999998765 34579999999854
No 26
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.96 E-value=7.9e-11 Score=99.49 Aligned_cols=53 Identities=30% Similarity=0.823 Sum_probs=43.1
Q ss_pred cccccccCcCCCCCCCeeecc-CCCCcccceecccCCC-------CCCCcEEcCCCcCccc
Q psy5827 256 VWICPACGVQDDGSLPMIGCD-GCDAWYHWVCVGLVAE-------PETSDWFCPKCSKVDE 308 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD-~C~~W~H~~Clgi~~~-------~~~~~W~Cp~C~~~~~ 308 (410)
++.|.+|+++++++..||+|| .|..|||+.|+|++.. .+...|+|+.|.....
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~ 63 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKE 63 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCC
Confidence 467999999965544799998 9999999999999863 2347999999986543
No 27
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.95 E-value=4.6e-11 Score=124.44 Aligned_cols=57 Identities=28% Similarity=0.672 Sum_probs=46.1
Q ss_pred CCCCcccccccCcCCCCCCCeeeccCCCCcccceecccCCCC--CCCcEEcCCCcCcccC
Q psy5827 252 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP--ETSDWFCPKCSKVDEG 309 (410)
Q Consensus 252 d~~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~--~~~~W~Cp~C~~~~~~ 309 (410)
.+....|| +|+.+++++.+||+||.|+.|||+.|+|++... ..+.|+|+.|......
T Consensus 33 ~~~~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~ 91 (488)
T 3kv5_D 33 PPPPPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGS 91 (488)
T ss_dssp CCCCCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCS
T ss_pred CCCCCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcCc
Confidence 34466899 999997644489999999999999999998772 2468999999876543
No 28
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=98.94 E-value=1.5e-10 Score=89.89 Aligned_cols=47 Identities=28% Similarity=0.725 Sum_probs=39.3
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
..+|.+|+. .+ .||+||.|+.|||+.|++++.. .+.+.|||+.|...
T Consensus 8 ~~~C~vC~~--~g--~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 8 EDECAVCRD--GG--ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CCSBSSSSC--CS--SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCccCCC--CC--CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 357999997 34 4999999999999999998766 55589999999854
No 29
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=3.1e-10 Score=85.29 Aligned_cols=47 Identities=28% Similarity=0.791 Sum_probs=39.0
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcC
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 305 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~ 305 (410)
...+|.+|+.. + .||.||.|+.|||+.|++++.. .+.+.|||+.|..
T Consensus 8 ~~~~C~vC~~~--g--~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 8 HEDFCSVCRKS--G--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SCCSCSSSCCS--S--CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCccCCCC--C--eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34579999983 3 4999999999999999998766 5568999999963
No 30
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=98.92 E-value=1.9e-10 Score=88.66 Aligned_cols=53 Identities=23% Similarity=0.599 Sum_probs=42.2
Q ss_pred CcccccccCcCC--CCCCCeeeccCCCCcccceecccCCC----CCCCcEEcCCCcCccc
Q psy5827 255 QVWICPACGVQD--DGSLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCSKVDE 308 (410)
Q Consensus 255 ~~~~C~VCg~~d--dgd~~mI~CD~C~~W~H~~Clgi~~~----~~~~~W~Cp~C~~~~~ 308 (410)
....|.+|+..+ +++ .||+||.|+.|||+.|++++.. .+.+.|||+.|.....
T Consensus 5 ~~~~C~vC~~~~~~~~~-~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPN-EMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTB-CEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCC-CEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 345799999863 224 7999999999999999999765 1568999999985543
No 31
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=98.91 E-value=3.3e-10 Score=92.95 Aligned_cols=49 Identities=22% Similarity=0.601 Sum_probs=40.5
Q ss_pred cccccccCcCC--CCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQD--DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~d--dgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
...|.+|+..+ +++ .||+||.|+.|||+.|++++.. +.+.|||+.|...
T Consensus 25 ~~~C~vC~~~~s~~~~-~ll~CD~C~~~fH~~Cl~p~~v-P~g~W~C~~C~~~ 75 (88)
T 2l43_A 25 DAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPYI-PEGQWLCRHCLQS 75 (88)
T ss_dssp CCCCSSCCSSSSCSEE-EEEECSSSCCCCCHHHHTCSSC-CSSCCCCHHHHHH
T ss_pred CCcCCcCCCCCCCCCC-CEEECCCCCchhhcccCCCCcc-CCCceECccccCc
Confidence 35799999864 333 7999999999999999999864 4589999999854
No 32
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=98.90 E-value=8.8e-10 Score=86.02 Aligned_cols=46 Identities=26% Similarity=0.598 Sum_probs=38.9
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
..|.+|+. .+ .||+||.|+.|||++|++++.. .+.+.|||+.|...
T Consensus 13 ~~C~vC~~--~~--~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGD--GT--DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSC--CT--TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCC--CC--eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 46999985 34 4999999999999999998876 55689999999854
No 33
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=98.87 E-value=4e-10 Score=89.14 Aligned_cols=49 Identities=22% Similarity=0.601 Sum_probs=40.4
Q ss_pred cccccccCcCC--CCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQD--DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~d--dgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
...|.+|+..+ +++ .||+||+|+.|||+.|++++.. +.+.|||+.|...
T Consensus 16 ~~~C~vC~~~~s~~~~-~ll~CD~C~~~~H~~Cl~~~~v-P~g~W~C~~C~~~ 66 (71)
T 2ku3_A 16 DAVCSICMDGESQNSN-VILFCDMCNLAVHQECYGVPYI-PEGQWLCRHCLQS 66 (71)
T ss_dssp SCSCSSSCCCCCCSSS-CEEECSSSCCEEEHHHHTCSSC-CSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCC-CEEECCCCCCccccccCCCCcC-CCCCcCCccCcCc
Confidence 34799999864 344 7999999999999999999864 4589999999743
No 34
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=98.86 E-value=8.2e-10 Score=86.96 Aligned_cols=47 Identities=30% Similarity=0.882 Sum_probs=39.4
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCC-cEEcCCCcC
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETS-DWFCPKCSK 305 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~-~W~Cp~C~~ 305 (410)
.|.+|+..++++ .||+||+|+.|||+.|++++.. .+.+ .|||+.|..
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 456788877666 7999999999999999998766 4456 999999984
No 35
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=98.86 E-value=5.4e-10 Score=85.00 Aligned_cols=47 Identities=28% Similarity=0.772 Sum_probs=39.1
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
..+|.+|+.. + .||.||.|+.|||+.|++++.. .+.+.|||+.|...
T Consensus 5 ~~~C~vC~~~--g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKS--G--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCC--S--SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCC--C--cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 3579999983 4 4999999999999999998766 55689999999743
No 36
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-09 Score=87.36 Aligned_cols=47 Identities=28% Similarity=0.818 Sum_probs=40.3
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCC-cEEcCCCcC
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETS-DWFCPKCSK 305 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~-~W~Cp~C~~ 305 (410)
.|.+|+..++++ .||+||.|+.+||+.|++++.. .+.+ .|||+.|..
T Consensus 28 ~C~vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKHEPN-MQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCCCST-TEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcCCCC-CEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 688999887666 7999999999999999998766 4456 999999974
No 37
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=98.82 E-value=1.3e-09 Score=101.25 Aligned_cols=50 Identities=22% Similarity=0.640 Sum_probs=41.3
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCccc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVDE 308 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~~~ 308 (410)
...+|.+|+. +|+ ||+||+|+.|||+.|++++.. .+.+.|+|+.|.....
T Consensus 6 ~~~~C~~C~~--~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQN--GGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCC--CEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCC--CCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 3457999996 344 999999999999999998776 5668999999997643
No 38
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.81 E-value=1.7e-10 Score=119.09 Aligned_cols=56 Identities=32% Similarity=0.729 Sum_probs=45.9
Q ss_pred CCcccccccCcCCCCCCCeeeccCCCCcccceecccCCC--CCCCcEEcCCCcCcccCc
Q psy5827 254 KQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGS 310 (410)
Q Consensus 254 ~~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~--~~~~~W~Cp~C~~~~~~k 310 (410)
++..|| +|+.+++++.+||+||.|+.|||+.|+|++.. ...+.|+|+.|......+
T Consensus 3 ~~~~yC-iC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~ 60 (447)
T 3kv4_A 3 SVPVYC-LCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPS 60 (447)
T ss_dssp CCCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCC
T ss_pred CCCeEE-eCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCccccCCc
Confidence 356799 99999764448999999999999999999876 334789999998765544
No 39
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.77 E-value=7.2e-09 Score=85.34 Aligned_cols=47 Identities=23% Similarity=0.678 Sum_probs=39.8
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
..+|.+|+. .++ +|+||.|+.+||+.|+.++.. .+.+.|+|+.|...
T Consensus 25 ~~~C~vC~~--~g~--LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 25 ATICRVCQK--PGD--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSCCSSSCS--SSC--CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCcCcCcCC--CCC--EEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 347999997 344 999999999999999988776 56689999999855
No 40
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.76 E-value=1.3e-09 Score=89.20 Aligned_cols=51 Identities=20% Similarity=0.588 Sum_probs=41.9
Q ss_pred cccccccCcCCCC-CCCeeeccCCCCcccceecccCCC-----CCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddg-d~~mI~CD~C~~W~H~~Clgi~~~-----~~~~~W~Cp~C~~~ 306 (410)
..+|.+|+..+.. +..||+||.|+.+||+.|++++.. .+.+.|||+.|...
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~ 72 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQ 72 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccch
Confidence 4579999986542 126999999999999999999876 46789999999854
No 41
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.75 E-value=1.1e-09 Score=100.88 Aligned_cols=52 Identities=33% Similarity=0.788 Sum_probs=42.2
Q ss_pred cccccCcCCCCCC---CeeeccCCCCcccceecccCCC--------CCCCcEEcCCCcCcccC
Q psy5827 258 ICPACGVQDDGSL---PMIGCDGCDAWYHWVCVGLVAE--------PETSDWFCPKCSKVDEG 309 (410)
Q Consensus 258 ~C~VCg~~ddgd~---~mI~CD~C~~W~H~~Clgi~~~--------~~~~~W~Cp~C~~~~~~ 309 (410)
+|++|+++++++. .||+||.|+.|||..|+|++.. +....|+|+.|......
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 7999999987653 4999999999999999999753 11237999999977543
No 42
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=98.69 E-value=4.9e-09 Score=84.17 Aligned_cols=48 Identities=31% Similarity=0.871 Sum_probs=39.4
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCc-EEcCCCcC
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSD-WFCPKCSK 305 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~-W~Cp~C~~ 305 (410)
..|.+|+..++++ .||+||.|+.+||++|++++.. .+.+. |||+.|..
T Consensus 27 C~C~vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 27 CACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp TSBTTTCCCSCGG-GEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred CcCCccCCCCCCc-ceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 3577788877666 7999999999999999998776 44466 99999974
No 43
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=98.68 E-value=7.2e-09 Score=94.29 Aligned_cols=47 Identities=21% Similarity=0.671 Sum_probs=39.8
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCcc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVD 307 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~~ 307 (410)
.+|.+|+. +|+ +|+||+|+.|||..|++++.. .+.+.|+|+.|....
T Consensus 5 ~~C~~C~~--~g~--ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 5 DWCAVCQN--GGE--LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSCTTTCC--CSS--CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CccccCCC--CCe--eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46999996 344 999999999999999988776 556899999998654
No 44
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=98.63 E-value=1e-08 Score=97.44 Aligned_cols=48 Identities=29% Similarity=0.857 Sum_probs=37.6
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCC-cEEcCCCcC
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETS-DWFCPKCSK 305 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~-~W~Cp~C~~ 305 (410)
..|.+|+..++++ .||+||+|+.|||+.|++++.. .+.+ .|+|+.|..
T Consensus 175 c~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC---CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 4699999987776 7999999999999999998777 4556 999999974
No 45
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=98.60 E-value=9.1e-09 Score=87.60 Aligned_cols=47 Identities=30% Similarity=0.824 Sum_probs=40.5
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcC
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 305 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~ 305 (410)
+|.+|+..++++ .||.||.|+.|||+.|++++.. .+.+.|||+.|..
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 107 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWE 107 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCccCCCCCCeECccccc
Confidence 588888877666 7999999999999999998766 5668999999974
No 46
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=98.58 E-value=1.9e-08 Score=85.55 Aligned_cols=45 Identities=33% Similarity=0.828 Sum_probs=36.5
Q ss_pred CcccccccCcCCCCCCCeeecc--CCCCcccceecccCCCCCCCcEEcCCCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCD--GCDAWYHWVCVGLVAEPETSDWFCPKCS 304 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD--~C~~W~H~~Clgi~~~~~~~~W~Cp~C~ 304 (410)
+..+|.+|+. +|+ ||+|| .|+.|||+.|+++...+ .+.|||+.|.
T Consensus 14 ~~~~C~~C~~--~G~--ll~CD~~~Cp~~fH~~Cl~L~~~P-~g~W~Cp~c~ 60 (107)
T 4gne_A 14 HEDYCFQCGD--GGE--LVMCDKKDCPKAYHLLCLNLTQPP-YGKWECPWHQ 60 (107)
T ss_dssp SCSSCTTTCC--CSE--EEECCSTTCCCEECTGGGTCSSCC-SSCCCCGGGB
T ss_pred CCCCCCcCCC--CCc--EeEECCCCCCcccccccCcCCcCC-CCCEECCCCC
Confidence 3457999984 444 99999 89999999999976544 5899999875
No 47
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=98.54 E-value=3.9e-08 Score=83.35 Aligned_cols=48 Identities=27% Similarity=0.654 Sum_probs=38.7
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcC
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSK 305 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~ 305 (410)
+|.+|+..++++..||+||.|+.+||+.|++++.. .+.+.|||+.|.+
T Consensus 63 ~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 57788875332226999999999999999988766 5668999999985
No 48
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.46 E-value=4.5e-08 Score=82.40 Aligned_cols=50 Identities=32% Similarity=0.747 Sum_probs=41.7
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCccc
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVDE 308 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~~~ 308 (410)
+|.+|+..++++ .||.||.|+.|||+.|++++.. .+.+.|||+.|.....
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~~ 106 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICIS 106 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCSC
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcCC
Confidence 577888877666 7999999999999999998766 5568999999976543
No 49
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=98.43 E-value=8e-08 Score=88.45 Aligned_cols=46 Identities=24% Similarity=0.712 Sum_probs=39.0
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCcc
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKVD 307 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~~ 307 (410)
+|.+|+. +|+ +|+||+|+.+||+.|+.++.. .+.+.|+|+.|....
T Consensus 4 ~C~~C~~--~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 4 ICRVCQK--PGD--LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CBTTTCC--CSS--CCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred cCccCCC--CCc--eeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 6999996 344 999999999999999987766 556899999998653
No 50
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.36 E-value=6.5e-08 Score=101.40 Aligned_cols=50 Identities=34% Similarity=0.804 Sum_probs=38.2
Q ss_pred cCcCCCCCCCeeeccCCCCcccceecccCCC--CCCCcEEcCCCcCcccCch
Q psy5827 262 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGSR 311 (410)
Q Consensus 262 Cg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~--~~~~~W~Cp~C~~~~~~k~ 311 (410)
+..+.+.+.+||+||.|+.|||+.|+|++.. ...+.|+||.|......+.
T Consensus 48 ~~~~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~gps~ 99 (528)
T 3pur_A 48 SHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSI 99 (528)
T ss_dssp TTTTTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHCSCE
T ss_pred cccCCCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCCCCcc
Confidence 3333334459999999999999999999876 3347999999997654433
No 51
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=98.09 E-value=1.8e-06 Score=72.55 Aligned_cols=47 Identities=26% Similarity=0.712 Sum_probs=39.2
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCS 304 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~ 304 (410)
.+|.+|+...+.. .||.|+.|++.||..|++++.. ...+.|+|+.|.
T Consensus 8 ~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 8 ANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp SCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4799999965543 5899999999999999999876 345799999986
No 52
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=98.05 E-value=1.5e-06 Score=77.30 Aligned_cols=48 Identities=25% Similarity=0.559 Sum_probs=40.2
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCC--------CCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--------PETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~--------~~~~~W~Cp~C~~~ 306 (410)
...+|.+|+. +|+ +|+||.|++.||..|+.++.. .+.+.|+|+.|...
T Consensus 62 ~~d~C~vC~~--GG~--LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 62 MDEQCRWCAE--GGN--LICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CBCSCSSSCC--CSS--EEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCeecccCC--CCc--EEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4468999997 555 999999999999999997664 35689999999865
No 53
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.67 E-value=7e-06 Score=69.07 Aligned_cols=37 Identities=35% Similarity=0.872 Sum_probs=30.5
Q ss_pred eeeccCCCCcccceecccCCC--------CCCCcEEcCCCcCccc
Q psy5827 272 MIGCDGCDAWYHWVCVGLVAE--------PETSDWFCPKCSKVDE 308 (410)
Q Consensus 272 mI~CD~C~~W~H~~Clgi~~~--------~~~~~W~Cp~C~~~~~ 308 (410)
||+||.|..|||..|++++.. +....|.|+.|.....
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~ 46 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHV 46 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSC
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCcccccccc
Confidence 999999999999999999752 3345899999986543
No 54
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=97.60 E-value=1.4e-05 Score=69.96 Aligned_cols=49 Identities=24% Similarity=0.543 Sum_probs=39.1
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCC--------CCCCcEEcCCCcCcc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--------PETSDWFCPKCSKVD 307 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~--------~~~~~W~Cp~C~~~~ 307 (410)
...+|.+|+. +|+ +|+||.|++.||..|+.+... .+.+.|+|..|....
T Consensus 56 ~~~~C~vC~d--GG~--LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 56 MDEQCRWCAE--GGN--LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp CBSSCTTTCC--CSE--EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCcCeecCC--CCe--eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 4467999996 454 999999999999999986532 246899999998653
No 55
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.58 E-value=1.2e-05 Score=68.09 Aligned_cols=48 Identities=25% Similarity=0.571 Sum_probs=36.9
Q ss_pred ccccccCcCC------CCCCCeeeccCCCCcccceecccCCC----CCCCcEEcCCCcC
Q psy5827 257 WICPACGVQD------DGSLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCSK 305 (410)
Q Consensus 257 ~~C~VCg~~d------dgd~~mI~CD~C~~W~H~~Clgi~~~----~~~~~W~Cp~C~~ 305 (410)
.+|.+|...+ .++ .||.|++|+.+||.+|+++... ...+.|+|+.|..
T Consensus 6 ~~C~~C~~~~~~~~~g~~~-~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~ 63 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPE-ELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKT 63 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCC-CCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCC
T ss_pred ccccccCCchhhCcCCCch-hceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCc
Confidence 4799997642 233 6999999999999999986422 3357999999973
No 56
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=97.55 E-value=4.4e-05 Score=70.09 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=36.6
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCC-----CCCCcEEcCCCcCcc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCSKVD 307 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~-----~~~~~W~Cp~C~~~~ 307 (410)
..|| -||.+.+-+..|++|+.|..|||..|++.... .....|.|..|...+
T Consensus 5 ~~yC-YCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 5 AGSV-DEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp -------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred eeEE-EcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence 4589 99998776679999999999999999986443 234578899998765
No 57
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=97.50 E-value=2.8e-05 Score=65.53 Aligned_cols=38 Identities=29% Similarity=0.627 Sum_probs=29.5
Q ss_pred CCeeeccCCCCcccceecccCCC-----CCCCcEEcCCCcCcc
Q psy5827 270 LPMIGCDGCDAWYHWVCVGLVAE-----PETSDWFCPKCSKVD 307 (410)
Q Consensus 270 ~~mI~CD~C~~W~H~~Clgi~~~-----~~~~~W~Cp~C~~~~ 307 (410)
..||+|+.|+.|||..|+++... ..+..|+|+.|.+.+
T Consensus 73 ~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 73 KKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp GSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred cceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 37999999999999999998754 223569999998764
No 58
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=97.36 E-value=2.3e-05 Score=66.49 Aligned_cols=46 Identities=22% Similarity=0.573 Sum_probs=35.9
Q ss_pred cccccCcCC-------CCCCCeeeccCCCCcccceecccCCC----CCCCcEEcCCCc
Q psy5827 258 ICPACGVQD-------DGSLPMIGCDGCDAWYHWVCVGLVAE----PETSDWFCPKCS 304 (410)
Q Consensus 258 ~C~VCg~~d-------dgd~~mI~CD~C~~W~H~~Clgi~~~----~~~~~W~Cp~C~ 304 (410)
+|.+|...+ +++ .||.|+.|+..||.+|+++... ...+.|+|+.|.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~-~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 59 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPE-ELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIECK 59 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCC-CCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGGC
T ss_pred cCccCCCCccccccCCCCC-CCeEeCCCCCccchhhCCChhhhhhccCCCccCccccC
Confidence 688997643 223 6999999999999999998632 334689999985
No 59
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=96.33 E-value=0.0017 Score=53.13 Aligned_cols=50 Identities=22% Similarity=0.585 Sum_probs=38.5
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccC------------CC-CCCCcEEcCCCcCccc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV------------AE-PETSDWFCPKCSKVDE 308 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~------------~~-~~~~~W~Cp~C~~~~~ 308 (410)
..|.||..-..++ ++.|..|.+.||..|+... .. .....|.|+.|...+.
T Consensus 16 ~~C~VC~~~t~~~--l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~l 78 (89)
T 1wil_A 16 EMCDVCEVWTAES--LFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNINL 78 (89)
T ss_dssp CCCTTTCCCCSSC--CSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCCS
T ss_pred cccCccccccccc--eeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhhh
Confidence 3699999865555 8999999999999998642 11 3557899999976543
No 60
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=91.22 E-value=0.065 Score=48.33 Aligned_cols=49 Identities=20% Similarity=0.509 Sum_probs=38.2
Q ss_pred CcccccccCcCCCCCCCeeecc--CCCCcccceecccCCC-------CCCCcEEcCCCcCcc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCD--GCDAWYHWVCVGLVAE-------PETSDWFCPKCSKVD 307 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD--~C~~W~H~~Clgi~~~-------~~~~~W~Cp~C~~~~ 307 (410)
-..||.+|+. ++ .+|.|| .|.+.|-..|+..... ...+.|.|-.|.+..
T Consensus 78 ~~~yC~wC~~--Gg--~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 78 YQSYCTICCG--GR--EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SBSSCTTTSC--CS--EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CcceeeEecC--CC--eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 3468999996 44 499999 7999999999754332 345799999999764
No 61
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=89.82 E-value=0.087 Score=53.55 Aligned_cols=49 Identities=22% Similarity=0.611 Sum_probs=38.9
Q ss_pred CcccccccCcCCCCCCCeeecc--CCCCcccceecccCCC-------CCCCcEEcCCCcCcc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCD--GCDAWYHWVCVGLVAE-------PETSDWFCPKCSKVD 307 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD--~C~~W~H~~Clgi~~~-------~~~~~W~Cp~C~~~~ 307 (410)
...||.+|+. +++ +|+|| .|.+.|-..|+..... ...+.|.|-.|.+..
T Consensus 92 ~~~yCr~C~~--Gg~--l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 92 YQSYCSICCS--GET--LLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SBCSCTTTCC--CSS--CEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CcccceEcCC--CCe--EEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 4578999997 444 99999 8999999999865443 234789999999764
No 62
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.63 E-value=0.71 Score=34.33 Aligned_cols=47 Identities=21% Similarity=0.457 Sum_probs=31.8
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
...|.||......- ++. .|+-.||..|+..-.........||.|...
T Consensus 20 ~~~C~IC~~~~~~~--~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 66 (73)
T 2ysl_A 20 EVICPICLDILQKP--VTI--DCGHNFCLKCITQIGETSCGFFKCPLCKTS 66 (73)
T ss_dssp CCBCTTTCSBCSSE--EEC--TTCCEEEHHHHHHHCSSSCSCCCCSSSCCC
T ss_pred CCEeccCCcccCCe--EEc--CCCChhhHHHHHHHHHcCCCCCCCCCCCCc
Confidence 45799998865433 333 788889999986543322246789999865
No 63
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.52 E-value=0.88 Score=31.99 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=31.9
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|.||......+...+....|+-.||..|+..-.. ....||.|+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~---~~~~CP~Cr~~ 52 (55)
T 1iym_A 6 VECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG---SHSTCPLCRLT 52 (55)
T ss_dssp CCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT---TCCSCSSSCCC
T ss_pred CcCccCCccccCCCceEECCCCCCcccHHHHHHHHH---cCCcCcCCCCE
Confidence 359999886544323445557999999999865433 24579999753
No 64
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=81.46 E-value=0.54 Score=38.01 Aligned_cols=32 Identities=25% Similarity=0.563 Sum_probs=25.6
Q ss_pred CcccccccCcCCCCCCCeeeccC--CCCcccceecc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVG 288 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~--C~~W~H~~Clg 288 (410)
|...|.+|+....|. .|+|.. |..+||..|.-
T Consensus 16 ~~l~C~iC~~~~~GA--ciqC~~~~C~~~fHv~CA~ 49 (87)
T 2lq6_A 16 WKLTCYLCKQKGVGA--SIQCHKANCYTAFHVTCAQ 49 (87)
T ss_dssp CCCCBTTTTBCCSSC--EEECSCTTTCCEEEHHHHH
T ss_pred hcCCCcCCCCCCCcE--eEecCCCCCCCcCcHHHHH
Confidence 556799998754455 899986 99999999963
No 65
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=79.04 E-value=0.58 Score=34.61 Aligned_cols=47 Identities=21% Similarity=0.290 Sum_probs=30.1
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
...|.||....... ..+..-.|+-.||..|+..-... ...||.|+..
T Consensus 14 ~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~ 60 (69)
T 2kiz_A 14 EEKCTICLSILEEG-EDVRRLPCMHLFHQVCVDQWLIT---NKKCPICRVD 60 (69)
T ss_dssp CCSBTTTTBCCCSS-SCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCSB
T ss_pred CCCCeeCCccccCC-CcEEEeCCCCHHHHHHHHHHHHc---CCCCcCcCcc
Confidence 34699998765433 23344468989999998642221 2359999865
No 66
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.73 E-value=1.1 Score=35.23 Aligned_cols=50 Identities=24% Similarity=0.527 Sum_probs=30.5
Q ss_pred cccccCcCCCCCCCeee---ccCCCCcccceecccCCCCCCCcEEcCCCcCccc
Q psy5827 258 ICPACGVQDDGSLPMIG---CDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 308 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~---CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~~ 308 (410)
.|.||...++.+..+|. |.+...+||..|+..=... .+...||.|.....
T Consensus 17 ~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~-~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 17 ICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS-SDTRCCELCKYEFI 69 (80)
T ss_dssp CCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH-HCCSBCSSSCCBCC
T ss_pred CCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh-CCCCCCCCCCCeee
Confidence 59999875543324553 2333489999998532111 12368999986543
No 67
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=78.53 E-value=1.5 Score=33.11 Aligned_cols=48 Identities=23% Similarity=0.365 Sum_probs=30.6
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
...|.||....... ..+.--.|.-.||..|+..-.. ....||.|+..-
T Consensus 15 ~~~C~IC~~~~~~~-~~~~~~~C~H~fc~~Ci~~~~~---~~~~CP~Cr~~~ 62 (78)
T 2ect_A 15 GLECPVCKEDYALG-ESVRQLPCNHLFHDSCIVPWLE---QHDSCPVCRKSL 62 (78)
T ss_dssp SCCCTTTTSCCCTT-SCEEECTTSCEEETTTTHHHHT---TTCSCTTTCCCC
T ss_pred CCCCeeCCccccCC-CCEEEeCCCCeecHHHHHHHHH---cCCcCcCcCCcc
Confidence 34699998765443 1222225888899999864322 235899998653
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=78.27 E-value=1.9 Score=33.77 Aligned_cols=48 Identities=25% Similarity=0.533 Sum_probs=33.7
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.+..|.||......+ +.|..|...||..|+.--.... ..=.||.|...
T Consensus 14 ~i~~C~IC~~~i~~g---~~C~~C~h~fH~~Ci~kWl~~~-~~~~CP~Cr~~ 61 (74)
T 2ct0_A 14 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSN-AEPRCPHCNDY 61 (74)
T ss_dssp SSCBCSSSCCBCSSS---EECSSSCCEECHHHHHHHSTTC-SSCCCTTTCSC
T ss_pred CCCcCcchhhHcccC---CccCCCCchhhHHHHHHHHHhc-CCCCCCCCcCc
Confidence 456799998865543 5788999999999986322211 12469999854
No 69
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=76.82 E-value=5 Score=32.53 Aligned_cols=36 Identities=25% Similarity=0.601 Sum_probs=29.4
Q ss_pred CeeeccCCC-CcccceecccCCCCCCCcEEcCCCcCccc
Q psy5827 271 PMIGCDGCD-AWYHWVCVGLVAEPETSDWFCPKCSKVDE 308 (410)
Q Consensus 271 ~mI~CD~C~-~W~H~~Clgi~~~~~~~~W~Cp~C~~~~~ 308 (410)
.+|.|..|. ..-|..|..+... ...|.|..|.....
T Consensus 45 ~L~lC~~Cgs~gtH~~Cs~l~~~--~~~weC~~C~~v~~ 81 (85)
T 1weq_A 45 RLILCATCGSHGTHRDCSSLRPN--SKKWECNECLPASG 81 (85)
T ss_dssp BCEECSSSCCCEECSGGGTCCTT--CSCCCCTTTSCCSS
T ss_pred EEEeCcccCCchhHHHHhCCcCC--CCCEECCcCccccC
Confidence 689999999 8899999987543 46899999996543
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=76.54 E-value=1.5 Score=44.37 Aligned_cols=52 Identities=29% Similarity=0.528 Sum_probs=33.6
Q ss_pred CcccccccCcCCC--CCCCeeecc--CCCCcccceeccc-----CC--C-CCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDD--GSLPMIGCD--GCDAWYHWVCVGL-----VA--E-PETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~dd--gd~~mI~CD--~C~~W~H~~Clgi-----~~--~-~~~~~W~Cp~C~~~ 306 (410)
....|+||-.... +...-..|+ .|..-||..|+.. +. . -..-.--||.|+..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~p 370 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCE
T ss_pred CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCc
Confidence 4456999976432 333446798 6999999999832 11 1 12234579999864
No 71
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=76.50 E-value=1.6 Score=36.67 Aligned_cols=29 Identities=10% Similarity=0.086 Sum_probs=24.2
Q ss_pred eeeccCCCCcccceecccCCC-CCCCcEEc
Q psy5827 272 MIGCDGCDAWYHWVCVGLVAE-PETSDWFC 300 (410)
Q Consensus 272 mI~CD~C~~W~H~~Clgi~~~-~~~~~W~C 300 (410)
.+.|..|+..||..|+..... .+.+.|+|
T Consensus 69 ~~~C~~Cp~sfC~~c~~g~l~~~~~~~~~c 98 (107)
T 4gne_A 69 VSFCEFCPHSFCKDHEKGALVPSALEGRLC 98 (107)
T ss_dssp CEECSSSSCEECTTTCTTSCEECTTTTCEE
T ss_pred CcCcCCCCcchhhhccCCcceecCCCCcee
Confidence 489999999999999977665 45578887
No 72
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=76.42 E-value=1.1 Score=34.25 Aligned_cols=50 Identities=22% Similarity=0.321 Sum_probs=32.3
Q ss_pred cccccccCcCCCCCCC-eeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLP-MIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~-mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
...|.||......... .+.- .|+-.||..|+.--.........||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 65 (88)
T 2ct2_A 15 VLECPICMESFTEEQLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKI 65 (88)
T ss_dssp CCBCTTTCCBCCTTSSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCC
T ss_pred CCCCccCCccccccCCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCc
Confidence 3569999886654311 2322 688899999985432211235889999865
No 73
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.59 E-value=1.3 Score=32.04 Aligned_cols=44 Identities=23% Similarity=0.494 Sum_probs=27.2
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCC
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 303 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C 303 (410)
...|.||......- .+. .|+-.||..|+.--.........||.|
T Consensus 20 ~~~C~IC~~~~~~p--~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 20 EVICPICLDILQKP--VTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCBCTTTCSBCSSC--EEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CCCCCcCCchhCCe--EEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 35799998765543 333 788888888875322211134578876
No 74
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.25 E-value=3 Score=29.30 Aligned_cols=44 Identities=23% Similarity=0.411 Sum_probs=28.3
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCC
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 303 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C 303 (410)
...|.||....... .++ .|.-.||..|+..-.........||.|
T Consensus 15 ~~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-VII---ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCBCSSSCCBCSSC-CCC---SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred CCCCccCCcccCcc-EeC---CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 35699998866554 232 588889999986432211245678877
No 75
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=72.38 E-value=0.97 Score=37.80 Aligned_cols=31 Identities=29% Similarity=0.769 Sum_probs=21.8
Q ss_pred CeeeccCCCCcccceecccCCC-CCCCcEEcCC
Q psy5827 271 PMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPK 302 (410)
Q Consensus 271 ~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~ 302 (410)
.||+||.|..|-.+. .++... ..+..|+|..
T Consensus 27 ~WVQCD~C~KWRrLP-~~~~~~~~~pd~W~C~m 58 (100)
T 2l7p_A 27 AWVRCDDCFKWRRIP-ASVVGSIDESSRWICMN 58 (100)
T ss_dssp EEEECTTTCCEEEEC-HHHHTTSTTSSCCCGGG
T ss_pred eEEeeCCCCccccCC-hhHccccCCCCCceeCC
Confidence 699999999998765 333221 2347899955
No 76
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=72.35 E-value=2.6 Score=32.87 Aligned_cols=31 Identities=16% Similarity=0.588 Sum_probs=20.6
Q ss_pred Ceeecc--CCCCcccceecccCCCCCCCcEEcCC
Q psy5827 271 PMIGCD--GCDAWYHWVCVGLVAEPETSDWFCPK 302 (410)
Q Consensus 271 ~mI~CD--~C~~W~H~~Clgi~~~~~~~~W~Cp~ 302 (410)
.||+|| .|..|-.+. .++.....++.|+|..
T Consensus 17 ~WVQCd~p~C~KWR~LP-~~~~~~~lpd~W~C~m 49 (69)
T 2e61_A 17 VWVQCSFPNCGKWRRLC-GNIDPSVLPDNWSCDQ 49 (69)
T ss_dssp CEEECSSTTTCCEEECC-SSCCTTTSCTTCCGGG
T ss_pred eEEEeCccccCcccCCc-cccccccCCCcCEeCC
Confidence 799999 999997652 2222222347899954
No 77
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=65.83 E-value=1.8 Score=30.27 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=30.8
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|.||..........+..-.|.-.||..|+..-.. ....||.|+..
T Consensus 6 ~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~ 52 (55)
T 2ecm_A 6 SGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLK---EGYRCPLCSGP 52 (55)
T ss_dssp CSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHH---HTCCCTTSCCS
T ss_pred CcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHH---cCCcCCCCCCc
Confidence 469999886533213455567898999999854222 12679999754
No 78
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.39 E-value=1.9 Score=32.37 Aligned_cols=47 Identities=19% Similarity=0.461 Sum_probs=31.0
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
..|.||....... ..+..-.|.-.||..|+..-.. ....||.|+..-
T Consensus 24 ~~C~IC~~~~~~~-~~~~~l~C~H~fh~~Ci~~w~~---~~~~CP~Cr~~~ 70 (75)
T 1x4j_A 24 TLCVVCMCDFESR-QLLRVLPCNHEFHAKCVDKWLK---ANRTCPICRADS 70 (75)
T ss_dssp CEETTTTEECCBT-CEEEEETTTEEEETTHHHHHHH---HCSSCTTTCCCC
T ss_pred CCCeECCcccCCC-CeEEEECCCCHhHHHHHHHHHH---cCCcCcCcCCcC
Confidence 4699998765443 2444456888899999854222 124799998653
No 79
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=63.56 E-value=2.5 Score=33.26 Aligned_cols=46 Identities=22% Similarity=0.503 Sum_probs=30.2
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|.||......+ ..+..-.|.-.||..|+..-.. ....||.|+..
T Consensus 41 ~~C~IC~~~~~~~-~~~~~l~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~~ 86 (91)
T 2l0b_A 41 MCCPICCSEYVKG-DVATELPCHHYFHKPCVSIWLQ---KSGTCPVCRCM 86 (91)
T ss_dssp SEETTTTEECCTT-CEEEEETTTEEEEHHHHHHHHT---TTCBCTTTCCB
T ss_pred CCCcccChhhcCC-CcEEecCCCChHHHHHHHHHHH---cCCcCcCcCcc
Confidence 4699998754433 2333334898999999864322 23489999854
No 80
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=63.07 E-value=3.5 Score=38.86 Aligned_cols=47 Identities=26% Similarity=0.543 Sum_probs=34.1
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
+..|.+|...-..+ +.|..|+..||..|+.--... ...-.||.|...
T Consensus 180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~-~~~~~CP~C~~~ 226 (238)
T 3nw0_A 180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQS-NAEPRCPHCNDY 226 (238)
T ss_dssp CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTT-CSSCBCTTTCCB
T ss_pred CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHh-CCCCCCCCCCCC
Confidence 56799998854434 789999999999999643221 134679999754
No 81
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.18 E-value=2.6 Score=31.41 Aligned_cols=46 Identities=22% Similarity=0.382 Sum_probs=29.7
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|.||.........++.. .|.-.||..|+..-... ...||.|+..
T Consensus 16 ~~C~IC~~~~~~~~~~~~~-~C~H~f~~~Ci~~~~~~---~~~CP~Cr~~ 61 (74)
T 2ep4_A 16 ELCAVCLEDFKPRDELGIC-PCKHAFHRKCLIKWLEV---RKVCPLCNMP 61 (74)
T ss_dssp CBCSSSCCBCCSSSCEEEE-TTTEEEEHHHHHHHHHH---CSBCTTTCCB
T ss_pred CCCcCCCcccCCCCcEEEc-CCCCEecHHHHHHHHHc---CCcCCCcCcc
Confidence 4699998865444233322 58888999998542221 2379999865
No 82
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=58.04 E-value=3.4 Score=30.75 Aligned_cols=47 Identities=21% Similarity=0.467 Sum_probs=29.0
Q ss_pred ccccccCcCCCCCCCeeeccCCC---CcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCD---AWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~---~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|.||....++. .+.-| .|. .|+|..|+.-=... .+.+.|+.|...
T Consensus 7 ~~CrIC~~~~~~~-l~~PC-~C~gs~~~~H~~Cl~~W~~~-~~~~~C~~C~~~ 56 (60)
T 1vyx_A 7 PVCWICNEELGNE-RFRAC-GCTGELENVHRSCLSTWLTI-SRNTACQICGVV 56 (60)
T ss_dssp CEETTTTEECSCC-CCCSC-CCSSGGGSCCHHHHHHHHHH-HTCSBCTTTCCB
T ss_pred CEeEEeecCCCCc-eecCc-CCCCchhhhHHHHHHHHHHh-CCCCccCCCCCe
Confidence 4699997754443 33333 454 59999998532110 135789999854
No 83
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=57.91 E-value=10 Score=28.18 Aligned_cols=48 Identities=17% Similarity=0.322 Sum_probs=31.7
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCC----CCCcEEcCCCcCcc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP----ETSDWFCPKCSKVD 307 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~----~~~~W~Cp~C~~~~ 307 (410)
...|.+|.....+- .++ .|+-.||..|+.--... ......||.|+...
T Consensus 12 ~~~C~IC~~~~~~p-~~l---~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~ 63 (79)
T 2egp_A 12 EVTCPICLELLTEP-LSL---DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISY 63 (79)
T ss_dssp CCEETTTTEECSSC-CCC---SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCC
T ss_pred CCCCcCCCcccCCe-eEC---CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcC
Confidence 35699998865543 232 58888888998643321 12478999998654
No 84
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=57.85 E-value=8.9 Score=28.12 Aligned_cols=42 Identities=26% Similarity=0.519 Sum_probs=23.0
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
+.|.+||-.++...-. --+...-|..-...+++|.||.|...
T Consensus 4 y~C~~CGyvYd~~~Gd--------p~~gi~pGt~f~~lP~dw~CP~Cg~~ 45 (52)
T 1e8j_A 4 YVCTVCGYEYDPAKGD--------PDSGIKPGTKFEDLPDDWACPVCGAS 45 (52)
T ss_dssp EECSSSCCCCCTTTCC--------TTTTCCSSCCTTSSCTTCCCSSSCCC
T ss_pred EEeCCCCeEEcCCcCC--------cccCcCCCCchHHCCCCCcCCCCCCc
Confidence 5688888877643100 01222222222233579999999864
No 85
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=57.65 E-value=37 Score=36.03 Aligned_cols=57 Identities=21% Similarity=0.312 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhcchHHHHhHHHHHHHHHhhc
Q psy5827 121 KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177 (410)
Q Consensus 121 k~~~~~~e~e~~e~~~k~k~~~~~~~~~~~~~~~~~k~~~~e~~rke~~~~ekeKk~ 177 (410)
+++.+.+|..+.|.++++.+.++++..+.+..|..+.++-.|..+|=.+..|++++.
T Consensus 485 ~~k~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~ 541 (592)
T 1f5n_A 485 KEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQ 541 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777778888888888888888777777777777776677666644444444443
No 86
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.49 E-value=6.9 Score=28.97 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=28.7
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|.||....... +.. .|.-.||..|+..-.. ....||.|+..
T Consensus 16 ~~C~IC~~~~~~~---~~~-~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~ 58 (71)
T 2d8t_A 16 PECAICLQTCVHP---VSL-PCKHVFCYLCVKGASW---LGKRCALCRQE 58 (71)
T ss_dssp CBCSSSSSBCSSE---EEE-TTTEEEEHHHHHHCTT---CSSBCSSSCCB
T ss_pred CCCccCCcccCCC---EEc-cCCCHHHHHHHHHHHH---CCCcCcCcCch
Confidence 4699998754332 222 5887899999864322 23689999865
No 87
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=56.38 E-value=5.4 Score=32.09 Aligned_cols=34 Identities=24% Similarity=0.402 Sum_probs=26.8
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCC
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE 292 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~ 292 (410)
..|.+|+.... + +.-.|..|+...|..|+..+..
T Consensus 48 ~~C~~C~~~~~-~-~~Y~C~~C~f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 48 YTCDKCEEEGT-I-WSYHCDECDFDLHAKCALNEDT 81 (89)
T ss_dssp CCCTTTSCCCC-S-CEEECTTTCCCCCHHHHHCSSC
T ss_pred eEeCCCCCcCC-C-cEEEcCCCCCeEcHHhcCCCCc
Confidence 57999998633 3 5677999999999999876544
No 88
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=55.32 E-value=7.1 Score=30.45 Aligned_cols=32 Identities=19% Similarity=0.484 Sum_probs=25.2
Q ss_pred Chhhhhc-CCCcc-cHHHHHhHHHHhhcCCcCCc
Q psy5827 370 TPRQCLR-EGLAP-QCEALKNTFFECKRSLLDNR 401 (410)
Q Consensus 370 t~~eCL~-~~~lp-eC~~l~~~~~eCKRg~lD~r 401 (410)
-+++||. +++.. .|+.+..++.+|++..++.|
T Consensus 13 aiQ~CL~~N~yd~skCq~~id~L~eCc~~~~~~~ 46 (68)
T 1hp8_A 13 EIQKCLQANSYMESKCQAVIQELRKCCAQYPKGR 46 (68)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTSCGGG
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHccCC
Confidence 3566776 45666 99999999999999887655
No 89
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=54.52 E-value=4.3 Score=32.77 Aligned_cols=51 Identities=16% Similarity=0.342 Sum_probs=31.8
Q ss_pred cccccCcCCCCC--------------CCeeeccCCCCcccceecccCCC--CCCCcEEcCCCcCccc
Q psy5827 258 ICPACGVQDDGS--------------LPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDE 308 (410)
Q Consensus 258 ~C~VCg~~ddgd--------------~~mI~CD~C~~W~H~~Clgi~~~--~~~~~W~Cp~C~~~~~ 308 (410)
.|.||....... ...+..-.|.-+||..|+..-.. .......||.|+....
T Consensus 27 ~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~ 93 (114)
T 1v87_A 27 DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG 93 (114)
T ss_dssp EETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred cCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence 699997753221 01233456999999999864221 1124678999986643
No 90
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.09 E-value=7 Score=28.42 Aligned_cols=45 Identities=16% Similarity=0.385 Sum_probs=30.6
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
...|.+|....... .++ .|+-.||..|+..-.. .....||.|...
T Consensus 15 ~~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~ 59 (66)
T 2ecy_A 15 KYKCEKCHLVLCSP-KQT---ECGHRFCESCMAALLS--SSSPKCTACQES 59 (66)
T ss_dssp CEECTTTCCEESSC-CCC---SSSCCCCHHHHHHHHT--TSSCCCTTTCCC
T ss_pred CCCCCCCChHhcCe-eEC---CCCCHHHHHHHHHHHH--hCcCCCCCCCcC
Confidence 45799998865544 232 6888899999864332 235679999865
No 91
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.33 E-value=7.5 Score=29.08 Aligned_cols=48 Identities=17% Similarity=0.328 Sum_probs=31.3
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCC---CCCCcEEcCCCcCcc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE---PETSDWFCPKCSKVD 307 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~---~~~~~W~Cp~C~~~~ 307 (410)
...|.+|......- ++. .|.-.||..|+..-.. ...+...||.|...-
T Consensus 19 ~~~C~IC~~~~~~p--~~~--~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~ 69 (85)
T 2ecv_A 19 EVTCPICLELLTQP--LSL--DCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69 (85)
T ss_dssp CCCCTTTCSCCSSC--BCC--SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSS
T ss_pred CCCCCCCCcccCCc--eeC--CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCcc
Confidence 35699998865543 222 6888899999854221 112467899998653
No 92
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.64 E-value=3.6 Score=31.32 Aligned_cols=46 Identities=13% Similarity=0.280 Sum_probs=29.9
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
....|.||......- .+ -.|.-.||..|+.--.. ....||.|....
T Consensus 14 ~~~~C~IC~~~~~~p--~~--~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAFQNP--VV--TKCRHYFCESCALEHFR---ATPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBCCSE--EE--CTTSCEEEHHHHHHHHH---HCSBCSSSCCBC
T ss_pred CCCCCcCCCchhcCe--eE--ccCCCHhHHHHHHHHHH---CCCcCCCcCccc
Confidence 345799998865433 22 36888888888753222 145799998653
No 93
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=51.98 E-value=4.1 Score=32.56 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=30.6
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|.+|.....+- .++ .|+-.||..|+.--.....+.+.||.|...
T Consensus 22 ~~C~IC~~~~~~p-~~~---~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~ 67 (112)
T 1jm7_A 22 LECPICLELIKEP-VST---KCDHIFCKFCMLKLLNQKKGPSQCPLCKND 67 (112)
T ss_dssp TSCSSSCCCCSSC-CBC---TTSCCCCSHHHHHHHHSSSSSCCCTTTSCC
T ss_pred CCCcccChhhcCe-EEC---CCCCHHHHHHHHHHHHhCCCCCCCcCCCCc
Confidence 4699998865443 222 688889999975432222245789999864
No 94
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=51.78 E-value=6.4 Score=29.52 Aligned_cols=48 Identities=17% Similarity=0.382 Sum_probs=31.0
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
....|.||.....+- +.-..|.-.||..|+..-.... +...||.|+..
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~ 61 (74)
T 2yur_A 14 DELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLES-DEHTCPTCHQN 61 (74)
T ss_dssp GGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHS-SSSCCSSSCCS
T ss_pred CCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhc-CCCcCCCCCCc
Confidence 345799998765443 3334488889999975432211 24689999864
No 95
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=51.75 E-value=5.4 Score=32.07 Aligned_cols=44 Identities=25% Similarity=0.594 Sum_probs=24.9
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..+.|.+||-.+++..-.- -....-|.+-...+.+|.||.|...
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp--------~~gI~pGT~fedlPddW~CPvCga~ 69 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWP--------EDGIAAGTRWDDIPDDWSCPDCGAA 69 (81)
T ss_dssp CEEEETTTCCEEETTTCBT--------TTTBCTTCCTTTSCTTCCCTTTCCC
T ss_pred ceEEeCCCCEEEcCCcCCc--------ccCcCCCCChhHCCCCCcCCCCCCC
Confidence 3578999998776541111 1112222222233578999999864
No 96
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=50.57 E-value=12 Score=27.93 Aligned_cols=47 Identities=21% Similarity=0.426 Sum_probs=30.8
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCC---CCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE---PETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~---~~~~~W~Cp~C~~~ 306 (410)
...|.||....... ++ . .|.-.||..|+..-.. .......||.|...
T Consensus 19 ~~~C~IC~~~~~~p--~~-~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~ 68 (85)
T 2ecw_A 19 EVTCPICLELLKEP--VS-A-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVP 68 (85)
T ss_dssp TTSCTTTCSCCSSC--EE-C-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCC
T ss_pred CCCCcCCChhhCcc--ee-C-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCc
Confidence 35799998865543 22 2 4888899999753221 12247899999865
No 97
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=49.75 E-value=7.5 Score=28.89 Aligned_cols=13 Identities=38% Similarity=1.045 Sum_probs=10.3
Q ss_pred CCCcEEcCCCcCc
Q psy5827 294 ETSDWFCPKCSKV 306 (410)
Q Consensus 294 ~~~~W~Cp~C~~~ 306 (410)
.+.+|.||.|...
T Consensus 33 lP~dw~CP~Cg~~ 45 (54)
T 4rxn_A 33 IPDDWVCPLCGVG 45 (54)
T ss_dssp SCTTCBCTTTCCB
T ss_pred CCCCCcCcCCCCc
Confidence 3478999999854
No 98
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=47.85 E-value=2.2 Score=35.31 Aligned_cols=34 Identities=21% Similarity=0.318 Sum_probs=25.2
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcC
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSK 305 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~ 305 (410)
+|.+|++. .|+.|...||..|+|.+ .|.|..|..
T Consensus 9 ~C~~C~~~--------~C~~C~~c~~~~~~~~~------~~~~~~c~~ 42 (117)
T 4bbq_A 9 KCKACVQG--------ECGVCHYCRDMKKFGGP------GRMKQSCVL 42 (117)
T ss_dssp CSHHHHSC--------CCSCSHHHHHSGGGTSC------CCSCCCCGG
T ss_pred cCcCcCCc--------CCCCCCCCcCCcccCCC------Cccccchhh
Confidence 56677763 29999999999999875 366666653
No 99
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.77 E-value=4.7 Score=31.10 Aligned_cols=46 Identities=24% Similarity=0.499 Sum_probs=29.3
Q ss_pred cccccCcCCC-----------CCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 258 ICPACGVQDD-----------GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 258 ~C~VCg~~dd-----------gd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.|.||..... ++...+.--.|.-.||..|+..=... .-.||.|+..
T Consensus 17 ~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~ 73 (81)
T 2ecl_A 17 TCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---NNRCPLCQQD 73 (81)
T ss_dssp CBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---CCBCTTTCCB
T ss_pred CCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---CCCCCCcCCC
Confidence 4777766542 22133444479999999998653331 2389999865
No 100
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=46.34 E-value=14 Score=26.22 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=27.5
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
....|.+|......- .++ .|.-.|+..|+.. ....||.|+...
T Consensus 5 ~~~~C~IC~~~~~~p-~~l---~CgH~fC~~Ci~~------~~~~CP~Cr~~~ 47 (56)
T 1bor_A 5 QFLRCQQCQAEAKCP-KLL---PCLHTLCSGCLEA------SGMQCPICQAPW 47 (56)
T ss_dssp CCSSCSSSCSSCBCC-SCS---TTSCCSBTTTCSS------SSSSCSSCCSSS
T ss_pred cCCCceEeCCccCCe-EEc---CCCCcccHHHHcc------CCCCCCcCCcEe
Confidence 345699998865543 333 3666677777644 246799998653
No 101
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.69 E-value=5 Score=28.97 Aligned_cols=48 Identities=21% Similarity=0.362 Sum_probs=29.7
Q ss_pred cccccccCcCCCCC---CCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGS---LPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd---~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
...|.||....... ...+..-.|.-.||..|+..-.. ....||.|+..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~ 65 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKK 65 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH---HCSSCTTTCCC
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH---cCCCCCCCCCc
Confidence 34699998753211 12344567888999999853221 12469999854
No 102
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=44.72 E-value=13 Score=29.99 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=30.9
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
...|.||......- .+. .|+-.||..|+.--.. .+...||.|....
T Consensus 15 ~~~C~iC~~~~~~p--~~~--~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 15 ECQCGICMEILVEP--VTL--PCNHTLCKPCFQSTVE--KASLCCPFCRRRV 60 (115)
T ss_dssp HHBCTTTCSBCSSC--EEC--TTSCEECHHHHCCCCC--TTTSBCTTTCCBC
T ss_pred CCCCccCCcccCce--eEc--CCCCHHhHHHHHHHHh--HCcCCCCCCCccc
Confidence 45799998765443 332 6887788888754332 2358899998653
No 103
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=41.76 E-value=7.8 Score=31.54 Aligned_cols=44 Identities=32% Similarity=0.610 Sum_probs=24.6
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..+.|.+||-.+++..-.- -+...-|..-...+++|.||.|...
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp--------~~gI~pGT~fedlPddW~CPvCga~ 77 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDE--------AEGFTPGTRFEDIPDDWCCPDCGAT 77 (87)
T ss_dssp CEEEETTTTEEEETTSCCT--------TTTCCSCCCGGGCCTTCCCSSSCCC
T ss_pred ceEECCCCCeEecCCcCCc--------ccCcCCCCChhHCCCCCCCCCCCCC
Confidence 4578999998766531110 1222222222223478999999854
No 104
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=41.58 E-value=20 Score=27.67 Aligned_cols=49 Identities=20% Similarity=0.480 Sum_probs=30.8
Q ss_pred ccccccCcCCC-CCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCccc
Q psy5827 257 WICPACGVQDD-GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 308 (410)
Q Consensus 257 ~~C~VCg~~dd-gd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~~ 308 (410)
..|+||..+.. .+..++.| .|+--|+..|+.--.. .+.+.||.|+....
T Consensus 12 ~~CpICle~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~--~~~~~CP~CR~~~~ 61 (78)
T 1e4u_A 12 VECPLCMEPLEIDDINFFPC-TCGYQICRFCWHRIRT--DENGLCPACRKPYP 61 (78)
T ss_dssp CBCTTTCCBCCTTTTTCCSS-TTSCCCCHHHHHHHTT--SSCSBCTTTCCBCS
T ss_pred CcCCccCccCcccccccccc-CCCCCcCHHHHHHHHh--cCCCCCCCCCCccC
Confidence 46999988653 22122333 5777778888753322 24689999997644
No 105
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=41.31 E-value=11 Score=29.20 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=23.2
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.+.|.+|+-.+++..-.- -+...-|.+-...+++|.||.|...
T Consensus 7 ~y~C~vCGyiYd~~~Gdp--------~~gi~pGT~f~~lPddw~CP~Cga~ 49 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDK--------FAGIPPGTPFVDLSDSFMCPACRSP 49 (70)
T ss_dssp CEEETTTCCEECTTTCCT--------TTTCCSSCCGGGSCTTCBCTTTCCB
T ss_pred eEEeCCCCEEEcCCCCCc--------ccCcCCCCchhhCCCCCcCCCCCCC
Confidence 467888988766431000 1112222221223478999999864
No 106
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.26 E-value=15 Score=27.20 Aligned_cols=46 Identities=20% Similarity=0.280 Sum_probs=29.6
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
....|.||.....+- +....|.-.||..|+.--.. ....||.|+..
T Consensus 14 ~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~ 59 (72)
T 2djb_A 14 PYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFY---YSNRCPKCNIV 59 (72)
T ss_dssp GGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHH---HCSSCTTTCCC
T ss_pred CCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHH---cCCcCCCcCcc
Confidence 345799998754433 33356887888888743221 13579999865
No 107
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=40.59 E-value=11 Score=27.58 Aligned_cols=12 Identities=42% Similarity=1.284 Sum_probs=10.0
Q ss_pred CCcEEcCCCcCc
Q psy5827 295 TSDWFCPKCSKV 306 (410)
Q Consensus 295 ~~~W~Cp~C~~~ 306 (410)
+.+|.||.|...
T Consensus 33 P~dw~CP~Cg~~ 44 (52)
T 1yk4_A 33 PDDWVCPLCGAP 44 (52)
T ss_dssp CTTCBCTTTCCB
T ss_pred CCCCcCCCCCCC
Confidence 478999999854
No 108
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=39.69 E-value=5.8 Score=34.35 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=32.6
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
...|.||.....+ .+.+-.|+-.||..|+.--.. .+...||.|...-
T Consensus 54 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDMLKN---TMTTKECLHRFCADCIITALR--SGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHH--TTCCBCTTTCCBC
T ss_pred CCCCcccChHhhC---cCEeCCCCChhHHHHHHHHHH--hCcCCCCCCCCcC
Confidence 4579999875443 355568998999999854322 1357899998654
No 109
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=39.11 E-value=6.6 Score=32.34 Aligned_cols=47 Identities=23% Similarity=0.560 Sum_probs=35.1
Q ss_pred ccccccCcC----CCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQ----DDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~----ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|+||+.. .+|+ .+|.|..|..-.--.|+--.. ..+.-.||.|...
T Consensus 17 qiCqiCGD~VG~~~~Ge-~FVAC~eC~FPvCrpCyEYEr--keG~q~CpqCktr 67 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGD-LFVACNECGFPACRPCYEYER--REGTQNCPQCKTR 67 (93)
T ss_dssp CBCSSSCCBCCBCSSSS-BCCSCSSSCCCCCHHHHHHHH--HTSCSSCTTTCCC
T ss_pred CccccccCccccCCCCC-EEEeeeccCChhhHHHHHHHH--hccCccccccCCc
Confidence 369999873 4566 789999999888778874432 2467889999855
No 110
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=38.84 E-value=10 Score=28.07 Aligned_cols=13 Identities=38% Similarity=1.127 Sum_probs=10.4
Q ss_pred CCCcEEcCCCcCc
Q psy5827 294 ETSDWFCPKCSKV 306 (410)
Q Consensus 294 ~~~~W~Cp~C~~~ 306 (410)
.+.+|.||.|...
T Consensus 33 lP~dw~CP~Cga~ 45 (55)
T 2v3b_B 33 IPADWVCPDCGVG 45 (55)
T ss_dssp SCTTCCCTTTCCC
T ss_pred CCCCCcCCCCCCC
Confidence 3478999999854
No 111
>2jwo_A RAG-2, V(D)J recombination-activating protein 2; phosphoinositide signaling, PHD domain, DNA recombination, DNA-binding, endonuclease, hydrolase; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 2v83_A* 2v85_A* 2v86_A* 2v87_A* 2v88_A* 2v89_A*
Probab=38.38 E-value=17 Score=29.01 Aligned_cols=52 Identities=23% Similarity=0.489 Sum_probs=30.9
Q ss_pred CCCCCcccccccCc------CCCCCCC----eeeccC-CCCcccceecccCCC------CCCCcEEcCC
Q psy5827 251 GDSKQVWICPACGV------QDDGSLP----MIGCDG-CDAWYHWVCVGLVAE------PETSDWFCPK 302 (410)
Q Consensus 251 ed~~~~~~C~VCg~------~ddgd~~----mI~CD~-C~~W~H~~Clgi~~~------~~~~~W~Cp~ 302 (410)
+.+.|+.-|..|.. |+.+... ||.|.. =.-|.|..|+++... .....|||..
T Consensus 7 etGYWI~Cc~~c~~dvntw~p~ystel~kpami~cs~g~ghwvhaqcm~l~e~~l~~lsq~n~ky~c~~ 75 (82)
T 2jwo_A 7 EFGYWITCCPTCDVDINTWVPFYSTELNKPAMIYCSHGDGHWVHAQCMDLEERTLIHLSEGSNKYYCNE 75 (82)
T ss_dssp SCSSCSCSSTTCCCCTTTCCCCSSSCSSSCCCEECCSSSCCEECSGGGTCCHHHHHHHTTSSCCCCCST
T ss_pred cCceEEEecCccccCcccccccccchhcchhhhhcCCCcchHHHHHHhhHHHHHHHHHhcCCcEEEEcC
Confidence 44568877888876 2222223 555532 368888889776443 3445677754
No 112
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=36.24 E-value=11 Score=28.74 Aligned_cols=50 Identities=22% Similarity=0.418 Sum_probs=33.0
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCC-CCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVA-EPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~-~~~~~~W~Cp~C~~~ 306 (410)
..|.+|...-..+..=-.|-.|..-+-..|-|-.. ...--.|.|..|...
T Consensus 10 ~~C~iC~KTKFADG~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 10 PTCGICHKTKFADGCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp CCCSSSSCSCCCSSCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred chhhhhccceeccCCCccccccCCeeecccCCEeeecCCeEEEEehhhhhc
Confidence 47999988543221234688888878778866433 233458999999754
No 113
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=35.60 E-value=8.8 Score=31.64 Aligned_cols=46 Identities=15% Similarity=0.350 Sum_probs=29.6
Q ss_pred cccccCcCCCCC--------------CCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 258 ICPACGVQDDGS--------------LPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 258 ~C~VCg~~ddgd--------------~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.|.||.....+. ...+.--.|.-.||..|+..-.. ....||.|+..
T Consensus 39 ~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~---~~~~CP~Cr~~ 98 (106)
T 3dpl_R 39 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLDNRE 98 (106)
T ss_dssp CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHT---TCSBCSSSCSB
T ss_pred CCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHH---cCCcCcCCCCc
Confidence 588887653322 11233346999999999865332 24579999865
No 114
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=35.56 E-value=9.1 Score=32.33 Aligned_cols=46 Identities=15% Similarity=0.350 Sum_probs=0.0
Q ss_pred cccccCcCCCCC--------------CCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 258 ICPACGVQDDGS--------------LPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 258 ~C~VCg~~ddgd--------------~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
.|.||.....+. ...|.--.|.-.||..|+..-.. ..-.||.|+..
T Consensus 50 ~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~---~~~~CP~Cr~~ 109 (117)
T 4a0k_B 50 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLK---TRQVCPLDNRE 109 (117)
T ss_dssp ---------------------------------------------------------------
T ss_pred cCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHH---cCCcCCCCCCe
Confidence 599997754321 11222236888999999855332 24579999854
No 115
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=34.78 E-value=19 Score=27.86 Aligned_cols=35 Identities=26% Similarity=0.414 Sum_probs=27.5
Q ss_pred CcccccccCcCCCC-CCCeeeccCCCCcccceeccc
Q psy5827 255 QVWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 255 ~~~~C~VCg~~ddg-d~~mI~CD~C~~W~H~~Clgi 289 (410)
.+.+|.+|+..-.| ....+.|..|....|-.|+..
T Consensus 33 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 68 (77)
T 2enn_A 33 QPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDK 68 (77)
T ss_dssp SCEECSSSCCEECCTTCCEEECSSSCCEEESGGGSS
T ss_pred CCcCccccChhhccccccccCcCCCCCcCCHhHHhh
Confidence 45789999886554 125688999999999999864
No 116
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=34.39 E-value=15 Score=24.15 Aligned_cols=15 Identities=33% Similarity=0.877 Sum_probs=11.5
Q ss_pred CCCcEEcCCCcCccc
Q psy5827 294 ETSDWFCPKCSKVDE 308 (410)
Q Consensus 294 ~~~~W~Cp~C~~~~~ 308 (410)
..++|+|+.|.....
T Consensus 2 k~gDW~C~~C~~~Nf 16 (32)
T 2lk0_A 2 KFEDWLCNKCCLNNF 16 (32)
T ss_dssp CCSEEECTTTCCEEE
T ss_pred CCCCCCcCcCcCCcC
Confidence 358999999986544
No 117
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.39 E-value=23 Score=27.65 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=27.5
Q ss_pred CcccccccCcCCCC-CCCeeeccCCCCcccceeccc
Q psy5827 255 QVWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 255 ~~~~C~VCg~~ddg-d~~mI~CD~C~~W~H~~Clgi 289 (410)
.+.+|.+|+..-.| ....+.|..|....|-.|...
T Consensus 27 ~pt~C~~C~~~lwGl~kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 27 QPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp SCCCCSSSCCCCCSSSCCEEEETTTCCEECTTGGGT
T ss_pred CCcChhhcChhhccccccccccCCcCCeeChhhhhh
Confidence 34689999886654 125788999999999999865
No 118
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=33.49 E-value=19 Score=24.97 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=26.7
Q ss_pred cccccccCcCCCC-CCCeeeccCCCCcccceeccc
Q psy5827 256 VWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 256 ~~~C~VCg~~ddg-d~~mI~CD~C~~W~H~~Clgi 289 (410)
+.+|.+|+..-.| ....+.|..|....|-.|...
T Consensus 11 pt~C~~C~~~l~g~~~qg~~C~~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 11 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCCcCCCCceeeccCCccCEeCCCCCeECHHHhhh
Confidence 4579999886654 235788999999999999764
No 119
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=33.39 E-value=13 Score=27.63 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=30.2
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
...|++|.....+- .+. .|+-.|+..|+.--.. .+...||.|...
T Consensus 8 ~~~C~IC~~~~~~P--v~~--~CgH~fc~~Ci~~~~~--~~~~~CP~C~~~ 52 (78)
T 1t1h_A 8 YFRCPISLELMKDP--VIV--STGQTYERSSIQKWLD--AGHKTCPKSQET 52 (78)
T ss_dssp SSSCTTTSCCCSSE--EEE--TTTEEEEHHHHHHHHT--TTCCBCTTTCCB
T ss_pred cCCCCCccccccCC--EEc--CCCCeecHHHHHHHHH--HCcCCCCCCcCC
Confidence 45799998865443 332 5888888888754322 236789999865
No 120
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=32.77 E-value=13 Score=31.29 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=28.3
Q ss_pred cccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 258 ~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
.|++|....... .++ .|+-.||..|+.--.. ....||.|+..-
T Consensus 55 ~C~iC~~~~~~~-~~~---~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~ 97 (138)
T 4ayc_A 55 QCIICSEYFIEA-VTL---NCAHSFCSYCINEWMK---RKIECPICRKDI 97 (138)
T ss_dssp BCTTTCSBCSSE-EEE---TTSCEEEHHHHHHHTT---TCSBCTTTCCBC
T ss_pred CCcccCcccCCc-eEC---CCCCCccHHHHHHHHH---cCCcCCCCCCcC
Confidence 599998865433 222 4777899999754322 235699998653
No 121
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=31.75 E-value=8.1 Score=33.14 Aligned_cols=46 Identities=17% Similarity=0.458 Sum_probs=30.6
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
....|.||......- +.. .|+-.|+..|+..-.. .+...||.|+..
T Consensus 30 ~~~~C~IC~~~~~~p---v~~-~CgH~FC~~Ci~~~~~--~~~~~CP~Cr~~ 75 (141)
T 3knv_A 30 AKYLCSACRNVLRRP---FQA-QCGHRYCSFCLASILS--SGPQNCAACVHE 75 (141)
T ss_dssp GGGBCTTTCSBCSSE---EEC-TTSCEEEHHHHHHHGG--GSCEECHHHHHT
T ss_pred cCcCCCCCChhhcCc---EEC-CCCCccCHHHHHHHHh--cCCCCCCCCCCc
Confidence 456799998864433 333 7887788888754322 235789999753
No 122
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=31.63 E-value=13 Score=28.55 Aligned_cols=47 Identities=19% Similarity=0.411 Sum_probs=29.1
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
...|.+|.....+- . ....|+-.|+..|+..... ..+...||.|...
T Consensus 13 ~~~C~IC~~~~~~p--~-~~~~CgH~fC~~Ci~~~~~-~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 13 ELLCLICKDIMTDA--V-VIPCCGNSYCDECIRTALL-ESDEHTCPTCHQN 59 (92)
T ss_dssp TTEETTTTEECSSC--E-ECTTTCCEECHHHHHHHHH-HCTTCCCTTTCCS
T ss_pred CCCCCCCChhhcCc--e-ECCCCCCHHHHHHHHHHHH-hcCCCcCcCCCCc
Confidence 46799998865543 2 2233777777777643211 1134789999865
No 123
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=30.86 E-value=7.8 Score=30.90 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=32.7
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
...|.||...... .+.|-.|+-.||..|+..-... ....||.|+..-
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~ 68 (100)
T 3lrq_A 22 VFRCFICMEKLRD---ARLCPHCSKLCCFSCIRRWLTE--QRAQCPHCRAPL 68 (100)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHHH--TCSBCTTTCCBC
T ss_pred CCCCccCCccccC---ccccCCCCChhhHHHHHHHHHH--CcCCCCCCCCcC
Confidence 3579999886442 5677889999999998543221 126899998653
No 124
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=30.58 E-value=18 Score=28.04 Aligned_cols=30 Identities=13% Similarity=0.387 Sum_probs=19.3
Q ss_pred CcccccccCcCC--CCCCCeeeccCCCCcccc
Q psy5827 255 QVWICPACGVQD--DGSLPMIGCDGCDAWYHW 284 (410)
Q Consensus 255 ~~~~C~VCg~~d--dgd~~mI~CD~C~~W~H~ 284 (410)
++..|++|+.+- +.....+.|..|..||=.
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (70)
T 2js4_A 7 DILVCPVCKGRLEFQRAQAELVCNADRLAFPV 38 (70)
T ss_dssp CCCBCTTTCCBEEEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcCEEeCCCCEEEcCCCCceecC
Confidence 346799998741 111246778888888743
No 125
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=29.80 E-value=21 Score=27.62 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=18.7
Q ss_pred cccccccCcCC--CCCCCeeeccCCCCcccc
Q psy5827 256 VWICPACGVQD--DGSLPMIGCDGCDAWYHW 284 (410)
Q Consensus 256 ~~~C~VCg~~d--dgd~~mI~CD~C~~W~H~ 284 (410)
+..|++|+.+- +.+...+.|..|..||=.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAYPI 38 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 45799998742 121246778888888743
No 126
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=29.62 E-value=9.6 Score=31.84 Aligned_cols=27 Identities=19% Similarity=0.593 Sum_probs=19.9
Q ss_pred cccccccCcC---------CCCCCCeeeccCCCCcc
Q psy5827 256 VWICPACGVQ---------DDGSLPMIGCDGCDAWY 282 (410)
Q Consensus 256 ~~~C~VCg~~---------ddgd~~mI~CD~C~~W~ 282 (410)
.+.|.+|+.. +..+..+|+|++|..|+
T Consensus 13 ~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~H 48 (100)
T 2e2z_A 13 AFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRH 48 (100)
T ss_dssp EEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEE
T ss_pred EEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccce
Confidence 3679999762 33345899999999964
No 127
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=29.30 E-value=22 Score=27.37 Aligned_cols=30 Identities=10% Similarity=0.141 Sum_probs=19.2
Q ss_pred CcccccccCcCC--CCCCCeeeccCCCCcccc
Q psy5827 255 QVWICPACGVQD--DGSLPMIGCDGCDAWYHW 284 (410)
Q Consensus 255 ~~~~C~VCg~~d--dgd~~mI~CD~C~~W~H~ 284 (410)
++..|++|..+- +.....+.|..|..||=.
T Consensus 7 ~iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2jr6_A 7 DILVCPVTKGRLEYHQDKQELWSRQAKLAYPI 38 (68)
T ss_dssp CCCBCSSSCCBCEEETTTTEEEETTTTEEEEE
T ss_pred hheECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 346799998742 111146778888888743
No 128
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=29.17 E-value=32 Score=23.60 Aligned_cols=26 Identities=19% Similarity=0.562 Sum_probs=20.1
Q ss_pred ChhhhhcC-CCcc-cHHHHHhHHHHhhc
Q psy5827 370 TPRQCLRE-GLAP-QCEALKNTFFECKR 395 (410)
Q Consensus 370 t~~eCL~~-~~lp-eC~~l~~~~~eCKR 395 (410)
-+++||.. ++.. .|+.+..++.+|..
T Consensus 9 a~q~CL~~n~~d~skCq~~id~l~~Cc~ 36 (38)
T 1ei0_A 9 EIQKCLQANSYLESKCQAVIQELKKCAA 36 (38)
T ss_dssp HHHHHHHHTTTCGGGTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHh
Confidence 46778864 5555 99999999999974
No 129
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=29.04 E-value=31 Score=25.53 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=26.7
Q ss_pred cccccccCcCCCC-CCCeeeccCCCCcccceeccc
Q psy5827 256 VWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 256 ~~~C~VCg~~ddg-d~~mI~CD~C~~W~H~~Clgi 289 (410)
+.+|.+|+..-.| ....+.|..|....|-.|+..
T Consensus 23 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 23 PTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp CCBCSSSCCBCCCSSSCSEEESSSCCEECTTTTTT
T ss_pred CcCchhcChhheecCCcccccCCCCCccCHhHHhh
Confidence 4689999886554 125678999999999999864
No 130
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=27.93 E-value=12 Score=30.80 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=30.0
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCccc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVDE 308 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~~ 308 (410)
..|.||......- .+. .|+-.||..|+..-.. ...+.||.|+....
T Consensus 53 ~~C~IC~~~~~~p--~~~--~CgH~fC~~Ci~~~~~--~~~~~CP~Cr~~~~ 98 (124)
T 3fl2_A 53 FQCICCQELVFRP--ITT--VCQHNVCKDCLDRSFR--AQVFSCPACRYDLG 98 (124)
T ss_dssp TBCTTTSSBCSSE--EEC--TTSCEEEHHHHHHHHH--TTCCBCTTTCCBCC
T ss_pred CCCCcCChHHcCc--EEe--eCCCcccHHHHHHHHh--HCcCCCCCCCccCC
Confidence 4699998865543 222 6887788888753222 23568999986543
No 131
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=27.70 E-value=21 Score=27.48 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=18.5
Q ss_pred cccccccCcCC--CCCCCeeeccCCCCcccc
Q psy5827 256 VWICPACGVQD--DGSLPMIGCDGCDAWYHW 284 (410)
Q Consensus 256 ~~~C~VCg~~d--dgd~~mI~CD~C~~W~H~ 284 (410)
+..|++|..+- +.....+.|..|..||=.
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~YPI 38 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAFPI 38 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEecC
Confidence 46799998742 111146778888888743
No 132
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=27.08 E-value=29 Score=24.31 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=25.1
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceeccc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi 289 (410)
+.+|.+|+..-. ..+.|..|....|-.|+..
T Consensus 14 pt~C~~C~~~l~---qG~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 14 LAFCDICQKFLL---NGFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp CEECTTSSSEEC---SEEECTTTTCCBCSTTSSS
T ss_pred CcCCCCcccccc---cCCEeCCCCCeEChhHHhh
Confidence 468999988544 3578999999999999864
No 133
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=26.59 E-value=23 Score=27.22 Aligned_cols=30 Identities=17% Similarity=0.109 Sum_probs=19.2
Q ss_pred CcccccccCcCC--CCCCCeeeccCCCCcccc
Q psy5827 255 QVWICPACGVQD--DGSLPMIGCDGCDAWYHW 284 (410)
Q Consensus 255 ~~~~C~VCg~~d--dgd~~mI~CD~C~~W~H~ 284 (410)
++..|++|..+- +.....+.|..|..||=.
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~YPI 40 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAYRI 40 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccccC
Confidence 346799998742 111146778888888743
No 134
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.40 E-value=37 Score=26.67 Aligned_cols=35 Identities=31% Similarity=0.472 Sum_probs=27.4
Q ss_pred CcccccccCcCCCC-CCCeeeccCCCCcccceeccc
Q psy5827 255 QVWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 255 ~~~~C~VCg~~ddg-d~~mI~CD~C~~W~H~~Clgi 289 (410)
.+.+|.+|+..-.| ....+.|..|....|-.|+..
T Consensus 27 ~pt~C~~C~~~l~Gl~kqG~~C~~C~~~~Hk~C~~~ 62 (85)
T 2eli_A 27 SPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVIN 62 (85)
T ss_dssp SCCBCSSSCCBCCCSSSCEEECSSSCCEEETTTTTT
T ss_pred CCcCCcccCccccccccCCCcCCCcCCccCHhHHhh
Confidence 34689999886654 125788999999999999864
No 135
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=26.31 E-value=23 Score=34.71 Aligned_cols=40 Identities=28% Similarity=0.753 Sum_probs=26.3
Q ss_pred cccccccCcCC----------CCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQD----------DGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~d----------dgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..+|+|||..- .++.-++.|..|..-+|+ ..+.|+.|...
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~-----------~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY-----------VRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC-----------CTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee-----------cCcCCcCCCCC
Confidence 46899999831 122247889999965552 34678888754
No 136
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=25.44 E-value=36 Score=26.09 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=26.3
Q ss_pred CcccccccCcCCCCCCCeeeccCCCCcccceeccc
Q psy5827 255 QVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi 289 (410)
...+|..|+..- .. ..+.|..|..-.|..|...
T Consensus 34 ~pt~C~~C~~~l-~~-qG~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 34 GPGWCDLCGREV-LR-QALRCANCKFTCHSECRSL 66 (72)
T ss_dssp SCCBCTTTSSBC-SS-CCEECTTSSCEECTGGGGG
T ss_pred CCcchhhhhHHH-Hh-CcCccCCCCCeechhhhcc
Confidence 446799998865 33 5789999999999999754
No 137
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=25.34 E-value=35 Score=29.43 Aligned_cols=50 Identities=20% Similarity=0.388 Sum_probs=34.3
Q ss_pred ccccccCcCCC-CCCCeeeccCCCCcccceecccCCC-CCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDD-GSLPMIGCDGCDAWYHWVCVGLVAE-PETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~dd-gd~~mI~CD~C~~W~H~~Clgi~~~-~~~~~W~Cp~C~~~ 306 (410)
..|.+|+.+.+ -+..-..|-.|..-+-..|-+.... .....|+|..|...
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred ccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 36999999763 1113567888887777777665433 34458999999864
No 138
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=24.51 E-value=32 Score=22.71 Aligned_cols=15 Identities=40% Similarity=1.002 Sum_probs=11.5
Q ss_pred CCcEEcCCCcCcccC
Q psy5827 295 TSDWFCPKCSKVDEG 309 (410)
Q Consensus 295 ~~~W~Cp~C~~~~~~ 309 (410)
.++|+|+.|......
T Consensus 4 ~gDW~C~~C~~~Nfa 18 (33)
T 2k1p_A 4 ANDWQCKTCSNVNWA 18 (33)
T ss_dssp SSSCBCSSSCCBCCT
T ss_pred CCCcccCCCCCcccc
Confidence 578999999866543
No 139
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=24.41 E-value=43 Score=32.74 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=26.8
Q ss_pred CcccccccCcCCCCC-CCeeeccCCCCcccceeccc
Q psy5827 255 QVWICPACGVQDDGS-LPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 255 ~~~~C~VCg~~ddgd-~~mI~CD~C~~W~H~~Clgi 289 (410)
.+..|.+|+....|- ..-..|..|+..+|..|.+-
T Consensus 356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~ 391 (406)
T 2vrw_B 356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGR 391 (406)
T ss_dssp SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGG
T ss_pred CCCCCccccchhceeCCCCCCCCCCcCccchhhhhh
Confidence 346899999866541 24567999999999999864
No 140
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=24.18 E-value=20 Score=28.64 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=30.9
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
...|.+|.....+ .+....|+-.||..|+.--.. ....||.|....
T Consensus 15 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~ 60 (108)
T 2ckl_A 15 HLMCVLCGGYFID---ATTIIECLHSFCKTCIVRYLE---TSKYCPICDVQV 60 (108)
T ss_dssp GTBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHT---SCSBCTTTCCBS
T ss_pred cCCCccCChHHhC---cCEeCCCCChhhHHHHHHHHH---hCCcCcCCCccc
Confidence 3569999875443 344457888888888754322 136899998653
No 141
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=23.68 E-value=20 Score=28.03 Aligned_cols=46 Identities=17% Similarity=0.305 Sum_probs=30.4
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
...|.+|.....+. +..-.|+-.||..|+.--.. ....||.|....
T Consensus 22 ~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~---~~~~CP~Cr~~~ 67 (99)
T 2y43_A 22 LLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLS---YKTQCPTCCVTV 67 (99)
T ss_dssp HTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHT---TCCBCTTTCCBC
T ss_pred CCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHH---CCCCCCCCCCcC
Confidence 35799998865433 33346888888888754322 236899998653
No 142
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=23.30 E-value=15 Score=26.54 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=28.2
Q ss_pred ccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|.+|.....+. +..-.|+-.||..|+..-.. ....||.|+..
T Consensus 6 ~~C~IC~~~~~~~---~~~~~C~H~fc~~Ci~~~~~---~~~~CP~Cr~~ 49 (68)
T 1chc_A 6 ERCPICLEDPSNY---SMALPCLHAFCYVCITRWIR---QNPTCPLCKVP 49 (68)
T ss_dssp CCCSSCCSCCCSC---EEETTTTEEESTTHHHHHHH---HSCSTTTTCCC
T ss_pred CCCeeCCccccCC---cEecCCCCeeHHHHHHHHHh---CcCcCcCCChh
Confidence 3699998864432 23345887799999853221 12579999855
No 143
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=23.25 E-value=32 Score=25.61 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=26.5
Q ss_pred cccccccCcCCCCC-CCeeeccCCCCcccceeccc
Q psy5827 256 VWICPACGVQDDGS-LPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 256 ~~~C~VCg~~ddgd-~~mI~CD~C~~W~H~~Clgi 289 (410)
+.+|.+|+..-.|- ...+.|..|....|-.|+..
T Consensus 24 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 24 PTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp CCCCTTTCCCCCSSCCEEEEETTTCCEECTTHHHH
T ss_pred CcChhhcChhhcccCcceeEcCCCCCeeCHHHHhh
Confidence 46799998866541 24678999999999999865
No 144
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.91 E-value=24 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.288 Sum_probs=26.5
Q ss_pred CcccccccCcCCCC-CCCeeeccCCCCcccceeccc
Q psy5827 255 QVWICPACGVQDDG-SLPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 255 ~~~~C~VCg~~ddg-d~~mI~CD~C~~W~H~~Clgi 289 (410)
...+|.+|+..-.| ...-+.|..|....|-.|+..
T Consensus 27 ~pt~C~~C~~~lwGl~kqG~~C~~C~~~~Hk~C~~~ 62 (74)
T 2db6_A 27 KPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSY 62 (74)
T ss_dssp SCEECSSSCCEECHHHHEEEEESSSCCEECTTTTGG
T ss_pred CCcCchhcChhhccccCCccccCCCCCccChhHHhh
Confidence 35689999885544 113578999999999999864
No 145
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.86 E-value=23 Score=25.76 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=27.9
Q ss_pred cccccccCcCCCCCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 256 VWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 256 ~~~C~VCg~~ddgd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
...|.||...... .. -.|.-.||..|+..-.. ....||.|+..
T Consensus 15 ~~~C~IC~~~~~~--~~---~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~ 57 (70)
T 2ecn_A 15 EEECCICMDGRAD--LI---LPCAHSFCQKCIDKWSD---RHRNCPICRLQ 57 (70)
T ss_dssp CCCCSSSCCSCCS--EE---ETTTEEECHHHHHHSSC---CCSSCHHHHHC
T ss_pred CCCCeeCCcCccC--cc---cCCCCcccHHHHHHHHH---CcCcCCCcCCc
Confidence 3469999875433 12 24777788899864332 35779999744
No 146
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.57 E-value=39 Score=27.09 Aligned_cols=11 Identities=27% Similarity=0.685 Sum_probs=7.7
Q ss_pred cEEcCCCcCcc
Q psy5827 297 DWFCPKCSKVD 307 (410)
Q Consensus 297 ~W~Cp~C~~~~ 307 (410)
+|||..|-...
T Consensus 51 ~yFC~~C~~Li 61 (81)
T 2jrp_A 51 DYFCQNGHGLI 61 (81)
T ss_dssp EECCTTTTCCC
T ss_pred CeeeccCCCEe
Confidence 68888887553
No 147
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=21.57 E-value=13 Score=26.31 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=29.7
Q ss_pred ccccccCcCCC----CCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCc
Q psy5827 257 WICPACGVQDD----GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKV 306 (410)
Q Consensus 257 ~~C~VCg~~dd----gd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~ 306 (410)
..|.+|..... ++ ..+..-.|+-.||..|+..-.. ....||.|+..
T Consensus 4 ~~C~IC~~~~~~~~~~~-~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~ 53 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKK 53 (64)
T ss_dssp CBCTTTCCBHHHHHHTT-CCEEEETTSCEEEHHHHHHHHH---HCSBCTTTCCB
T ss_pred CCCCccChhhhCccccC-CCEEeCCCCCchhHHHHHHHHH---cCCCCCCCCcc
Confidence 46999987432 12 2445567898899999853221 13479999865
No 148
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=20.87 E-value=43 Score=24.69 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=26.1
Q ss_pred cccccccCcCCCCC-CCeeeccCCCCcccceeccc
Q psy5827 256 VWICPACGVQDDGS-LPMIGCDGCDAWYHWVCVGL 289 (410)
Q Consensus 256 ~~~C~VCg~~ddgd-~~mI~CD~C~~W~H~~Clgi 289 (410)
+.+|.+|+..-.|- ..-+.|..|....|-.|...
T Consensus 20 pt~C~~C~~~l~Gl~~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 20 PTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp CCBCTTTCCBCCSSSSCEEEETTTCCEECHHHHTT
T ss_pred CCcccccChhhhccCceeeECCCCCCeEchhHhhh
Confidence 45799998865441 25688999999999999764
No 149
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=20.71 E-value=19 Score=26.10 Aligned_cols=47 Identities=21% Similarity=0.398 Sum_probs=30.3
Q ss_pred ccccccCcCCC----CCCCeeeccCCCCcccceecccCCCCCCCcEEcCCCcCcc
Q psy5827 257 WICPACGVQDD----GSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKCSKVD 307 (410)
Q Consensus 257 ~~C~VCg~~dd----gd~~mI~CD~C~~W~H~~Clgi~~~~~~~~W~Cp~C~~~~ 307 (410)
..|.||..... ++ ..+..-.|+-.||..|+..-.. ....||.|+..-
T Consensus 11 ~~C~IC~~~~~~~~~~~-~~~~~~~CgH~fc~~Ci~~~~~---~~~~CP~Cr~~~ 61 (71)
T 3ng2_A 11 VSCPICMDGYSEIVQNG-RLIVSTECGHVFCSQCLRDSLK---NANTCPTCRKKI 61 (71)
T ss_dssp CBCTTTCCBHHHHHTTT-CCEEECTTSCEEEHHHHHHHHH---HCSBCTTTCCBC
T ss_pred CCCcccChhhhcccccc-CCeEeCCCCChHhHHHHHHHHH---cCCCCCCCCCcc
Confidence 46999987432 12 2445567888999999853221 124799998653
Done!