RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5827
(410 letters)
>gnl|CDD|192483 pfam10203, Pet191_N, Cytochrome c oxidase assembly protein PET191.
Pet191_N is the conserved N-terminal of a family of
conserved proteins found from nematodes to humans. It
carries six highly conserved cysteine residues. Pet191
is required for the assembly of active cytochrome c
oxidase but does not form part of the final assembled
complex.
Length = 68
Score = 86.2 bits (214), Expect = 3e-21
Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 3/67 (4%)
Query: 343 DKSACAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAP---QCEALKNTFFECKRSLLD 399
S+C G R DL CLLE+DCV+ +++TPR+CL+E L +C AL+ FFECKR +LD
Sbjct: 1 MGSSCKGLREDLAECLLESDCVKKEKRTPRECLKEPLKELPEECIALRKAFFECKRGMLD 60
Query: 400 NRTRFRG 406
R RFRG
Sbjct: 61 MRKRFRG 67
>gnl|CDD|214584 smart00249, PHD, PHD zinc finger. The plant homeodomain (PHD)
finger is a C4HC3 zinc-finger-like motif found in
nuclear proteins thought to be involved in epigenetics
and chromatin-mediated transcriptional regulation. The
PHD finger binds two zinc ions using the so-called
'cross-brace' motif and is thus structurally related to
the RING finger and the FYVE finger. It is not yet known
if PHD fingers have a common molecular function. Several
reports suggest that it can function as a
protein-protein interacton domain and it was recently
demonstrated that the PHD finger of p300 can cooperate
with the adjacent BROMO domain in nucleosome binding in
vitro. Other reports suggesting that the PHD finger is a
ubiquitin ligase have been refuted as these domains were
RING fingers misidentified as PHD fingers.
Length = 47
Score = 53.0 bits (127), Expect = 1e-09
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKC 303
C CG DDG ++ CDGCD WYH C+G L+ E W+CPKC
Sbjct: 1 YCSVCGKPDDGGE-LLQCDGCDRWYHQTCLGPPLLEEEPDGKWYCPKC 47
>gnl|CDD|201356 pfam00628, PHD, PHD-finger. PHD folds into an interleaved type of
Zn-finger chelating 2 Zn ions in a similar manner to
that of the RING and FYVE domains. Several PHD fingers
have been identified as binding modules of methylated
histone H3.
Length = 51
Score = 52.5 bits (126), Expect = 2e-09
Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPET---SDWFCPKCS 304
C CG DD ++ CDGCD W+H C+G EPE +W+CP+C
Sbjct: 1 YCAVCGKVDDDGE-LLLCDGCDRWFHLACLGPPLEPEEIPEGEWYCPECK 49
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 58.5 bits (142), Expect = 3e-09
Identities = 30/188 (15%), Positives = 67/188 (35%), Gaps = 1/188 (0%)
Query: 17 TPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSE 76
T +++ K K + S T + KE + K V + +
Sbjct: 6 TKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKD 65
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
+ D KK K K + KKK K + D K EK D + K +
Sbjct: 66 TDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDID 125
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+ + ++ + +D + + +++ + + + D+D++ K+ K +K +
Sbjct: 126 V-LNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDD 184
Query: 197 ERSSHEKE 204
+ +++
Sbjct: 185 DDFVWDED 192
Score = 52.3 bits (126), Expect = 2e-07
Identities = 28/171 (16%), Positives = 55/171 (32%)
Query: 32 KTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDK 91
K KE + SK+KT + + + T K
Sbjct: 35 KEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKK 94
Query: 92 KTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF 151
K + + K +KK+ DKD N KD + + + ++ + ++ ++ +
Sbjct: 95 KLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDE 154
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
ED + EEK KE + D ++ + + R +
Sbjct: 155 DDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARKDAK 205
Score = 46.9 bits (112), Expect = 1e-05
Identities = 27/138 (19%), Positives = 53/138 (38%), Gaps = 2/138 (1%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
T + E+ KKK KK K K+K +++I + E KK ++ +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSG 61
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPK 208
+ E + K K+ K + K +K KK K++L KK +++++ +K+
Sbjct: 62 MVKDTDDATESDIPK--KKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLN 119
Query: 209 LTFKFGTDMEEKTKRESS 226
+ +
Sbjct: 120 YVKDIDVLNQADDDDDDD 137
Score = 45.8 bits (109), Expect = 3e-05
Identities = 22/149 (14%), Positives = 44/149 (29%), Gaps = 7/149 (4%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKK-----DKDKIKNKEKDKEKKIDKEKEKGKKEE 136
K+ ++ KKK K+ K K K + + +K ++ID+
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMV 63
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
K+ + E K K + K +K + E S K +K
Sbjct: 64 KDTDDATESDIPK--KKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYV 121
Query: 197 ERSSHEKEVIPKLTFKFGTDMEEKTKRES 225
+ + D+++ +
Sbjct: 122 KDIDVLNQADDDDDDDDDDDLDDDDIDDD 150
Score = 43.8 bits (104), Expect = 1e-04
Identities = 32/201 (15%), Positives = 67/201 (33%), Gaps = 11/201 (5%)
Query: 63 TPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKD------KIKN 116
T E ++KK + K K K+E ++ + K K + +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSG 61
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
KD + + + K K + K + +K+ K + D K E K+ + +
Sbjct: 62 MVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAE---KKNALDKDDDL 118
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFG--TDMEEKTKRESSPKIVIKPV 234
+ KD + + + + + ++ + D ++ E K K +
Sbjct: 119 NYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKEL 178
Query: 235 KSPSPPPVAAADEYDTGDSKQ 255
+ S DE D+ +Q
Sbjct: 179 EKLSDDDDFVWDEDDSEALRQ 199
Score = 42.3 bits (100), Expect = 4e-04
Identities = 19/166 (11%), Positives = 51/166 (30%), Gaps = 4/166 (2%)
Query: 30 KDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEI-KKDKSIK 88
+ S K+ ++ K D + KK +
Sbjct: 40 EALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDE 99
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
D +K+ K KD + D + D + + + + ++++ E+
Sbjct: 100 LDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDED 159
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
+ +D + E+ ++ ++ + + E L++ +K
Sbjct: 160 DD---DDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQARK 202
Score = 39.2 bits (92), Expect = 0.003
Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 1/146 (0%)
Query: 24 KDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKK 83
KD + PK+K + K + + K EL + +D K
Sbjct: 64 KDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSK-KAEKKNALDKDDDLNYVK 122
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
D + + + D D D ++ ++D + ++++ KKE KE ++
Sbjct: 123 DIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLS 182
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEEK 169
+ + + + + K K
Sbjct: 183 DDDDFVWDEDDSEALRQARKDAKLTA 208
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 56.9 bits (138), Expect = 9e-09
Identities = 21/79 (26%), Positives = 51/79 (64%)
Query: 110 DKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEK 169
+++I+ K+ +K K E+K ++E+KEKK++ K+++E+ EK +KEE+
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 170 DSEKEKKSKDKDKKLKKEK 188
E+E++++++ ++ +++K
Sbjct: 455 KEEEEEEAEEEKEEEEEKK 473
Score = 55.3 bits (134), Expect = 2e-08
Identities = 28/75 (37%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
Query: 106 KDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIR 165
KK KIK + EKK ++EK++ KK++ ++KE++EE+E + KE++++ E+
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKE-KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Query: 166 KEEKDSEKEKKSKDK 180
+EEK+ E+EKK K
Sbjct: 463 EEEKEEEEEKKKKQA 477
Score = 53.8 bits (130), Expect = 7e-08
Identities = 31/82 (37%), Positives = 53/82 (64%), Gaps = 1/82 (1%)
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
EI+ KK K KK EK +KK++++ K+K K K+K+ ++E+EK KKEE
Sbjct: 395 TEEEIEFLTGSKKATKK-IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEE 453
Query: 137 KEKKEEKEKKEEKEFKMKEDKE 158
++++EE+E +EEKE + ++ K+
Sbjct: 454 EKEEEEEEAEEEKEEEEEKKKK 475
Score = 53.4 bits (129), Expect = 1e-07
Identities = 26/71 (36%), Positives = 46/71 (64%)
Query: 123 KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
K +K K E+ EKK E+EKKE+K+ K++ E+ KE+K+ EKE++ ++ ++
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Query: 183 KLKKEKLKKKK 193
+ ++E+ KKKK
Sbjct: 465 EKEEEEEKKKK 475
Score = 51.1 bits (123), Expect = 7e-07
Identities = 20/81 (24%), Positives = 51/81 (62%)
Query: 107 DKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK 166
+++ + + +K +K ++ KK E+EKKE+K+K + K +E++E+ +K +
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 167 EEKDSEKEKKSKDKDKKLKKE 187
+E++ E+ ++ K+++++ KK+
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKK 475
Score = 48.8 bits (117), Expect = 3e-06
Identities = 27/81 (33%), Positives = 53/81 (65%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
+ E++ + K K K +K ++K +++K +K K K+K++E++ +KEK++ +
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 134 KEEKEKKEEKEKKEEKEFKMK 154
KEE+E++ E+EK+EE+E K K
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKK 475
Score = 48.8 bits (117), Expect = 3e-06
Identities = 16/81 (19%), Positives = 54/81 (66%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
+++ + + K+ KK +K ++ ++K+EE++ + K+ +K +EE++ EK+++
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 178 KDKDKKLKKEKLKKKKKEKER 198
K+++++ +E+ ++++++K++
Sbjct: 455 KEEEEEEAEEEKEEEEEKKKK 475
Score = 48.0 bits (115), Expect = 5e-06
Identities = 20/75 (26%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 126 DKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 185
K+ K K+ EK E+K ++E+KE K K+ ++ +EE+ +KE++ ++++++ +
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKE-KKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAE 463
Query: 186 KEKLKKKKKEKERSS 200
+EK ++++K+K++++
Sbjct: 464 EEKEEEEEKKKKQAT 478
Score = 44.9 bits (107), Expect = 6e-05
Identities = 22/75 (29%), Positives = 44/75 (58%)
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
+EE E +K +K K+ E EK E+ +KE+K K K+++++ +KEK +++K
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 194 KEKERSSHEKEVIPK 208
+E+E + E++ +
Sbjct: 456 EEEEEEAEEEKEEEE 470
Score = 42.6 bits (101), Expect = 3e-04
Identities = 22/70 (31%), Positives = 48/70 (68%)
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
KK K+ K+ EK E+K + K++K+K +K+E++ E+EK+ K+++K+ ++E+ +++
Sbjct: 406 KKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Query: 193 KKEKERSSHE 202
K+E+E +
Sbjct: 466 KEEEEEKKKK 475
Score = 41.1 bits (97), Expect = 9e-04
Identities = 17/70 (24%), Positives = 51/70 (72%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
+++ + +I + K++++ +KK+K KKK+++++++ + KE++KE++ ++ +E+ +
Sbjct: 408 ATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKE 467
Query: 134 KEEKEKKEEK 143
+EE++KK++
Sbjct: 468 EEEEKKKKQA 477
Score = 37.2 bits (87), Expect = 0.014
Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 206
E+E + +K +KI+K + +EK+++ + K+KK K KKK++E+E +KE
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKE-E 453
Query: 207 PKLTFKFGTDMEEKTKRESSPK 228
K + + E++ + E K
Sbjct: 454 EKEEEEEEAEEEKEEEEEKKKK 475
Score = 34.1 bits (79), Expect = 0.12
Identities = 14/79 (17%), Positives = 40/79 (50%)
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
++E + + K ++KI ++ + +E+K + K K +K +++++E++ E+
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 204 EVIPKLTFKFGTDMEEKTK 222
+ + + + EE+ K
Sbjct: 455 KEEEEEEAEEEKEEEEEKK 473
Score = 30.7 bits (70), Expect = 1.6
Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 11/108 (10%)
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKK----SKDKDKKLKKEKLKKKKKEKERSSHEKEVIPK 208
+ + + ++ + +E+E + SK KK+KK K +KK +E +K+
Sbjct: 377 IFKHNPELAARLAAFLELTEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFA 436
Query: 209 LTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSKQV 256
+++ + E + + + +E + KQ
Sbjct: 437 -------GKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKKQA 477
Score = 29.1 bits (66), Expect = 5.2
Identities = 12/84 (14%), Positives = 37/84 (44%), Gaps = 7/84 (8%)
Query: 44 KTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIK 103
+K V+ E + + K K +++++ +KKE+EK +
Sbjct: 405 SKKATKKIKKIVEKAEKKREE------EKKEKKKKAFAGKKKEEEEEEEK-EKKEEEKEE 457
Query: 104 KKKDKKDKDKIKNKEKDKEKKIDK 127
++++ +++ + + ++K K+ +
Sbjct: 458 EEEEAEEEKEEEEEKKKKQATLFD 481
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 57.1 bits (137), Expect = 1e-08
Identities = 45/129 (34%), Positives = 76/129 (58%), Gaps = 4/129 (3%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E+KK + KK + KKKE E+ KK ++ K K + +NK K E+ E++K K EE +K
Sbjct: 1624 ELKKAEEEKKKVEQLKKKEAEEKKKAEELK-KAEEENKIKAAEEAKKAEEDKKKAEEAKK 1682
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRK---EEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
EE EKK + K + ++ K E+++K EEK +E K +++ K+K E+ KK+ +E
Sbjct: 1683 AEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Query: 197 ERSSHEKEV 205
++ + E +
Sbjct: 1743 KKKAEEAKK 1751
Score = 56.3 bits (135), Expect = 2e-08
Identities = 36/123 (29%), Positives = 58/123 (47%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E KK KK + KKK KK ++ K + E + + E+ + ++K
Sbjct: 1313 EAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
KEE +KK + K E+K+K E +K E+D +K + K KK KKK E+++
Sbjct: 1373 KEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Query: 200 SHE 202
+ E
Sbjct: 1433 ADE 1435
Score = 54.0 bits (129), Expect = 1e-07
Identities = 32/125 (25%), Positives = 65/125 (52%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E K ++ + +EK + +KK ++ K K +K E+K ++ K K EE +K
Sbjct: 1346 EAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKK 1405
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
K ++ KK K ++ +K E+ +K ++ +K +++K D+ KK + KK +E ++
Sbjct: 1406 KADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Query: 200 SHEKE 204
+ E +
Sbjct: 1466 AEEAK 1470
Score = 53.6 bits (128), Expect = 1e-07
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 4/153 (2%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEK----KIDKEKEKGKKE 135
E KK KK + KKK E K KK D+ K K ++K+K K E+ K E
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
K+K EE +K EE + K +E K+ K + EE E K K ++ K K ++ KK +
Sbjct: 1449 AKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEA 1508
Query: 196 KERSSHEKEVIPKLTFKFGTDMEEKTKRESSPK 228
K+++ K+ EE K + + K
Sbjct: 1509 KKKADEAKKAEEAKKADEAKKAEEAKKADEAKK 1541
Score = 53.2 bits (127), Expect = 2e-07
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 6/184 (3%)
Query: 22 KMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEI 81
K K + + K + K+K +K + K ++ E + E
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEE---AK 1377
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID---KEKEKGKKEEKE 138
KK + KK + KK ++ K K ++DKK D++K K+K + K +EK K +E +
Sbjct: 1378 KKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAK 1437
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
KK E+ KK ++ K E+ +K E +K E+ + ++ K ++ K ++ KKK +E ++
Sbjct: 1438 KKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKK 1497
Query: 199 SSHE 202
+ E
Sbjct: 1498 KADE 1501
Score = 51.3 bits (122), Expect = 8e-07
Identities = 42/184 (22%), Positives = 83/184 (45%)
Query: 21 SKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGE 80
+K + V ++ + + K + +E K ++ + +K + E
Sbjct: 1223 AKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADE 1282
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
+KK + KK + K +EK+K + K K ++ K ++ K K ++ K+ + KK+ +E K
Sbjct: 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
+ E + + ++ E EK EK E+ KK D KK +EK K + +K+
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE 1402
Query: 201 HEKE 204
+K+
Sbjct: 1403 DKKK 1406
Score = 50.5 bits (120), Expect = 1e-06
Identities = 52/186 (27%), Positives = 94/186 (50%), Gaps = 4/186 (2%)
Query: 48 KEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHK-KKEKEKIKKKK 106
K+ E +K+K EL V+ ++ E KK + +KK ++ +K K +E K ++
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
Query: 107 DKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVE-KIR 165
DKK ++ K E+D++K E K + EE +K EE +KKE +E K E+ +K E
Sbjct: 1673 DKKKAEEAKKAEEDEKKA--AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKI 1730
Query: 166 KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRES 225
K E+ ++ ++ K K ++ KK++ +KKK + EK+ K EE + +
Sbjct: 1731 KAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDE 1790
Query: 226 SPKIVI 231
++ +
Sbjct: 1791 KRRMEV 1796
Score = 49.0 bits (116), Expect = 4e-06
Identities = 36/126 (28%), Positives = 71/126 (56%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E + + + K + KK + E+ KK ++ K K + K ++++KK+++ K+K +E+K+
Sbjct: 1590 EEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKA 1649
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
+E K+ +EE + K E+ +K E +K E+ + E+ K + LKKE + KK E+ +
Sbjct: 1650 EELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKK 1709
Query: 200 SHEKEV 205
+E
Sbjct: 1710 KEAEEK 1715
Score = 47.1 bits (111), Expect = 1e-05
Identities = 41/124 (33%), Positives = 73/124 (58%), Gaps = 3/124 (2%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
+K + KK K KK +E K ++ K ++ K K + +KK +EK+K ++ +K ++
Sbjct: 1598 MKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEE 1657
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK--EKKSKDKDKKLKKEKLKKKKKEKER 198
E K K E+ K +EDK+K E+ +K E+D +K E K+ ++ K E+LKKK+ E+++
Sbjct: 1658 ENKIKAAEEAKKAEEDKKK-AEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Query: 199 SSHE 202
+ E
Sbjct: 1717 KAEE 1720
Score = 45.9 bits (108), Expect = 3e-05
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 3/159 (1%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E KK KK + KK ++ K K ++ KK D+ K + K+K + +K + K+ E
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEA 1527
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
K+ +E K+ E K E+K+K E + EE +EKK ++ KK +++K +K +E
Sbjct: 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAK 1587
Query: 200 SHEK---EVIPKLTFKFGTDMEEKTKRESSPKIVIKPVK 235
E+ E + KL + E+ K+ KI + +K
Sbjct: 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELK 1626
Score = 45.1 bits (106), Expect = 7e-05
Identities = 38/131 (29%), Positives = 77/131 (58%), Gaps = 8/131 (6%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK-----EKEKGKK 134
+ KK + KK ++ KK + K+ ++ K +++K KE +++KK ++ E+ K K
Sbjct: 1673 DKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKA 1732
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
EE +K+ E++KK+ +E K E+++K + ++KEE EK+ + K+K+ E+ ++
Sbjct: 1733 EEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEE---EKKAEEIRKEKEAVIEEELDEED 1789
Query: 195 EKERSSHEKEV 205
EK R +K++
Sbjct: 1790 EKRRMEVDKKI 1800
Score = 45.1 bits (106), Expect = 7e-05
Identities = 46/186 (24%), Positives = 89/186 (47%), Gaps = 3/186 (1%)
Query: 22 KMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEI 81
+ K K K +K +K +K K E ++ +E+L +
Sbjct: 1501 EAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKA 1560
Query: 82 KKDKSIKKDKKTHKKKEKEKIKK---KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
++ K ++ KK + K K KK ++ + + K ++EKK+ E+ K +E K
Sbjct: 1561 EEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKI 1620
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
K EE +K EE++ K+++ K+K E+ +K E+ + E+++K K + K+ + KKK +E
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEA 1680
Query: 199 SSHEKE 204
E++
Sbjct: 1681 KKAEED 1686
Score = 43.2 bits (101), Expect = 3e-04
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 7/124 (5%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E K K K KK E KK ++ K D+ K K ++ +KK D+ K+ E K+K
Sbjct: 1454 EEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKA--AEAKKK 1511
Query: 140 KEEKEKKEEK----EFKMKEDKEKPVEKIRKEEKDSEKE-KKSKDKDKKLKKEKLKKKKK 194
+E +K EE E K E+ +K E + EEK E KK+++ K +K+K ++ KK
Sbjct: 1512 ADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKK 1571
Query: 195 EKER 198
+E
Sbjct: 1572 AEED 1575
Score = 42.8 bits (100), Expect = 3e-04
Identities = 37/127 (29%), Positives = 66/127 (51%), Gaps = 2/127 (1%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE--KDKEKKIDKEKEKGKKEEK 137
E KK K + KKK +E K + KK ++ K + K K ++ K+ ++ KK +
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
KK+ E K+ +E K ++ +K E + +E +EKK D+ KK ++ K ++KK+ E
Sbjct: 1508 AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAE 1567
Query: 198 RSSHEKE 204
+ +E
Sbjct: 1568 EAKKAEE 1574
Score = 41.7 bits (97), Expect = 6e-04
Identities = 42/182 (23%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDK----------IKNKEKDKEKKIDKEK 129
+KK + KKD + KK E+E+ ++ K ++ + IK +E K ++ K +
Sbjct: 1228 AVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAE 1287
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
EK K +E +K EEK+K +E + K +E K+ K + EE + + K ++ K +
Sbjct: 1288 EKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEA 1347
Query: 190 KK----KKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAA 245
K ++ ++ EK + + + K+++ K K + A
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKA 1407
Query: 246 DE 247
DE
Sbjct: 1408 DE 1409
Score = 40.9 bits (95), Expect = 0.001
Identities = 38/177 (21%), Positives = 80/177 (45%), Gaps = 28/177 (15%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEK----------------------------IKKKKDKKDK 111
+ KK +++KK ++ K E+ K IK ++ +K
Sbjct: 1222 DAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKAD 1281
Query: 112 DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDS 171
+ K +EK K + K +EK K +E +KK E+ KK ++ K E+ +K + +K+ +++
Sbjct: 1282 ELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEA 1341
Query: 172 EKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPK 228
+K ++ + + ++ + +++ E + +KE K EEK K + + K
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKK 1398
Score = 39.0 bits (90), Expect = 0.005
Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 18/165 (10%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE--KDKEKKIDKEKEKG------- 132
KK + KK KK + K K + KK ++ K E K +E K E +K
Sbjct: 1490 KKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKAD 1549
Query: 133 --KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKI----RKEEKDSEKEKKSKDKDKKLKK 186
KK E+ KK E++KK E+ K +EDK + K + EE E+ K +++KK+K
Sbjct: 1550 ELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKA 1609
Query: 187 EKLKKKKKEK---ERSSHEKEVIPKLTFKFGTDMEEKTKRESSPK 228
E+ KK ++ K E +E K+ + EEK K E K
Sbjct: 1610 EEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKK 1654
Score = 35.1 bits (80), Expect = 0.086
Identities = 39/110 (35%), Positives = 64/110 (58%), Gaps = 6/110 (5%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDK-DKIKNKEKDKEKKIDKEKEKGKKEEKE 138
E KK + +KK + KKK +E K +++ K K ++ K + ++ +KK E+ KK+E+E
Sbjct: 1700 EAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKK----AEEAKKDEEE 1755
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
KK+ K+E+E K E+ K E + +EE D E EK+ + DKK+K
Sbjct: 1756 KKKIAHLKKEEE-KKAEEIRKEKEAVIEEELDEEDEKRRMEVDKKIKDIF 1804
Score = 33.6 bits (76), Expect = 0.25
Identities = 31/179 (17%), Positives = 80/179 (44%)
Query: 21 SKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGE 80
+D + + K +KT + E ++ + + +ED +
Sbjct: 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARK 1141
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
++ + + K+ ++ E +K ++ + + K E ++ + ++ E+ +K E +K
Sbjct: 1142 AEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARK 1201
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
E +K E+E K +E ++ K + K +E+ KK ++ KK ++E+ ++ ++ E +
Sbjct: 1202 AEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEA 1260
Score = 32.0 bits (72), Expect = 0.80
Identities = 38/152 (25%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E++K + +K + K +E+ K ++ + +D K + +K +E K D E+ K +EE+
Sbjct: 1192 ELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNN 1251
Query: 140 KEEKEKKEEK--EFKMKEDKEKPVEKIRKEE-KDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+E ++ +E + F ++ K E + +E K +E++KK+ + K +K+K + KK+
Sbjct: 1252 EEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKA 1311
Query: 197 ERSSHEKEVIPKLTFKFGTDMEEKTKRESSPK 228
E + E K K K E + K
Sbjct: 1312 EEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Score = 30.9 bits (69), Expect = 1.6
Identities = 31/168 (18%), Positives = 83/168 (49%), Gaps = 2/168 (1%)
Query: 32 KTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDK 91
K + +++ + E + +E K ++++ ++ +E+ +IK +++ K +
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEA--KKE 1738
Query: 92 KTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF 151
KK+ E+ KK +++K K KE++K+ + +++++ EE+ +E+++++ E +
Sbjct: 1739 AEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRRMEVDK 1798
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
K+K+ + I ++ + SK+ + KE K + E +
Sbjct: 1799 KIKDIFDNFANIIEGGKEGNLVINDSKEMEDSAIKEVADSKNMQLEEA 1846
Score = 29.7 bits (66), Expect = 3.3
Identities = 29/133 (21%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
+ED + + + ++ +K + ++ E +K + + ++ + E+ ++ + K+ E KK
Sbjct: 1172 AEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKK 1231
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK--KLKKEKLKKK 192
E+ KK+ +E K+ +E + E+ K E + K+++ K +LKK + KKK
Sbjct: 1232 AEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKK 1291
Query: 193 KKEKERSSHEKEV 205
E +++ +K+
Sbjct: 1292 ADEAKKAEEKKKA 1304
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 51.0 bits (122), Expect = 5e-07
Identities = 35/126 (27%), Positives = 66/126 (52%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEK 137
+ K+ + K+ K+KE+ K +KKK K+ + K KE+ +K K K++EK
Sbjct: 91 KTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEK 150
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
EKK E+ + E+E K + + K K ++K K+K+ +++K+ + + K K +E
Sbjct: 151 EKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEE 210
Query: 198 RSSHEK 203
+E+
Sbjct: 211 PDVNEE 216
Score = 49.5 bits (118), Expect = 2e-06
Identities = 39/132 (29%), Positives = 78/132 (59%), Gaps = 2/132 (1%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIK--NKEKDKEKKIDKE 128
K++S E + ++K S KT KE + K+++K+K+++K K+K ++ K + +
Sbjct: 70 KLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPK 129
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
K K+E KEK+ KEK++EKE K++E +++ EK R+ + + KK K KK++
Sbjct: 130 DRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKE 189
Query: 189 LKKKKKEKERSS 200
+++K+++ +
Sbjct: 190 PPEEEKQRQAAR 201
Score = 45.3 bits (107), Expect = 5e-05
Identities = 32/139 (23%), Positives = 75/139 (53%), Gaps = 4/139 (2%)
Query: 93 THKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
+ + ++ + K K K + K++ K ++++++ KEEK+KK+EK K+E K+ K
Sbjct: 73 SDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRK 132
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK----KKKKEKERSSHEKEVIPK 208
KE+ ++ KE++ +K ++ +D++++ K+E+++ KK K++ ++K+ P+
Sbjct: 133 PKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPE 192
Query: 209 LTFKFGTDMEEKTKRESSP 227
+ E + P
Sbjct: 193 EEKQRQAAREAVKGKPEEP 211
Score = 44.1 bits (104), Expect = 1e-04
Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 15/225 (6%)
Query: 21 SKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGE 80
K K KE + K KEKE K + + P ++ +
Sbjct: 81 EKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKP-----------KEEPK 129
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
+K K K+K+ KEKEK K+KK ++ +D+ + K++++ + + K+ KK+ KK
Sbjct: 130 DRKPKEEAKEKR--PPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKK 187
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
+E ++E++ +E + E+ E+ ++E KD++ + + ++ E S
Sbjct: 188 KEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEEDESRQSSEISR 247
Query: 201 HEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAA 245
M RESS + +P S PP A
Sbjct: 248 RSSS--SLKKPDPSPSMASPETRESSKRTETRPRTSLRPPSARPA 290
Score = 36.0 bits (83), Expect = 0.030
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEK--EKKEEKEKKEEKEFKMKEDKEKPVEKIR 165
K D+ + + K K K KE K KEE+++KE+ KE+K+K EK +
Sbjct: 70 KLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQV----KEEKKKKKEKPK 125
Query: 166 KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
+E KD + ++++K+K +KEK K+KK E+ R E
Sbjct: 126 EEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREE 162
Score = 33.7 bits (77), Expect = 0.19
Identities = 47/184 (25%), Positives = 77/184 (41%), Gaps = 18/184 (9%)
Query: 20 PSKMKDKVSPK-DKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDL 78
K K K PK + K K +KEK PKEKE K K VE E
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVE----------------EPR 158
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
++ K + K+ KK +K K K+ ++ K ++ +E K +E EE+E
Sbjct: 159 DREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEERE 218
Query: 139 KKEEKEK-KEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
K+E+ K +E M+ED+ + +I + S K+ + + K+ + +
Sbjct: 219 KEEDDGKDRETTTSPMEEDESRQSSEISRRSSSSLKKPDPSPSMASPETRESSKRTETRP 278
Query: 198 RSSH 201
R+S
Sbjct: 279 RTSL 282
Score = 31.4 bits (71), Expect = 0.95
Identities = 33/143 (23%), Positives = 58/143 (40%), Gaps = 10/143 (6%)
Query: 19 PPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDL 78
P K K K+K PKEK KEK + ++ + K E V+ S
Sbjct: 127 EPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRE---------RVRAKSRPKK 177
Query: 79 GEIKKDKSIKKDK-KTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEK 137
KK + KK+ + K+++ + K ++ D + +EK+++ D+E EE
Sbjct: 178 PPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETTTSPMEED 237
Query: 138 EKKEEKEKKEEKEFKMKEDKEKP 160
E ++ E +K+ P
Sbjct: 238 ESRQSSEISRRSSSSLKKPDPSP 260
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 51.3 bits (124), Expect = 5e-07
Identities = 33/130 (25%), Positives = 75/130 (57%), Gaps = 8/130 (6%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
K I + K ++E ++I ++ K+ + K + +++I K + + +KE +E++ E +
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQ 85
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK- 203
K E++ + +E+ ++ +E + K E++ EK++K ++ K+++L+KK++E E E+
Sbjct: 86 KLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQ----KQQELEKKEEELEELIEEQL 141
Query: 204 ---EVIPKLT 210
E I LT
Sbjct: 142 QELERISGLT 151
Score = 47.5 bits (114), Expect = 8e-06
Identities = 26/97 (26%), Positives = 61/97 (62%), Gaps = 11/97 (11%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKK--KDKKDK-DKIKNKEK---DKEKKIDKEKEKGKKE 135
K+ ++IKK+ K+E K++ + K+ +++ ++++ EK KE+ +D++ E +K
Sbjct: 49 KEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKR 108
Query: 136 EKE--KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
E+E KKE++ +++++E E KE+ +E++ +E+
Sbjct: 109 EEELEKKEKELEQKQQEL---EKKEEELEELIEEQLQ 142
Score = 32.4 bits (75), Expect = 0.43
Identities = 28/116 (24%), Positives = 69/116 (59%), Gaps = 10/116 (8%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD---KEKKIDKEKEKGKKEE 136
++++ K +K+ +K+E K + +K +++++ KEK+ K+++++K++E+ ++
Sbjct: 78 RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI 137
Query: 137 KEKKEEKEK-----KEE-KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
+E+ +E E+ EE KE +++ +E+ + K+ E+E K ++ DKK K+
Sbjct: 138 EEQLQELERISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEEAK-EEADKKAKE 192
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 50.6 bits (121), Expect = 7e-07
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
K E+ K + ++ + K + K+ + K E +E + K +E++ K +
Sbjct: 351 KLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQE 410
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
E+++K +KE+ D +KEK+ KD+ KK
Sbjct: 411 ENEKK-----QKEQADEDKEKRQKDERKK 434
Score = 44.8 bits (106), Expect = 6e-05
Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query: 102 IKKKKDKKDKDKIKNKEKDKE-KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKP 160
K ++ K + ++ + K+ +K+ + K+ E K+E + EE E K KE+K K
Sbjct: 350 TKLYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLK- 408
Query: 161 VEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
++E + +KE+ +DK+K+ +K ++KK
Sbjct: 409 ----QEENEKKQKEQADEDKEKR---QKDERKK 434
Score = 41.3 bits (97), Expect = 6e-04
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E+K + + DK+ KE K + KK + + +E + ++EK K+EE E
Sbjct: 355 EVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENE- 413
Query: 140 KEEKEKKEEKEFKMKEDKEK 159
K++KE+ +E + K ++D+ K
Sbjct: 414 KKQKEQADEDKEKRQKDERK 433
Score = 38.2 bits (89), Expect = 0.006
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+K++E K+ K+ + K V K+E D+ +E ++K K++KLK+E+ +KK+KE+
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEV----KDETDASEEAEAKAKEEKLKQEENEKKQKEQA 420
Query: 198 RSSHEKE 204
EK
Sbjct: 421 DEDKEKR 427
Score = 32.5 bits (74), Expect = 0.42
Identities = 16/59 (27%), Positives = 34/59 (57%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
+ L + K KD+ ++ + K K++K K+++++ K KE+ E K ++K++ KK
Sbjct: 376 KKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 49.1 bits (117), Expect = 2e-06
Identities = 28/117 (23%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
K ++ KK ++ E+ + ++ ++ + +++ + ++ E+ + EEK+K+ E
Sbjct: 63 AKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAE 122
Query: 143 KEK-KEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ K K+ E K K + E + + +K +E+E K+K + KK KKK E E
Sbjct: 123 EAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEA 179
Score = 46.4 bits (110), Expect = 1e-05
Identities = 27/119 (22%), Positives = 59/119 (49%), Gaps = 2/119 (1%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKK-KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
KK + ++ + + E+ + K+ ++ + K E+ ++ +K+K+ + + K+
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQ 128
Query: 139 KKEEKEKKEEK-EFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
E K K E + E K KE+ +K E+ K + +E +KK+ + KK + E K + +
Sbjct: 129 AAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKA 187
Score = 45.2 bits (107), Expect = 3e-05
Identities = 34/143 (23%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 85 KSIKKDKKTHKKKEKEKIKK---KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
I++ KK KKE+E+ KK + ++ +K + + + KE + EK K+ ++ +
Sbjct: 53 NRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAK 112
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
+ E+K+++ + K + E K E ++EK+ K + K K+ ++E K E ++ +
Sbjct: 113 QAEEKQKQAEEAKAKQAA--EAKAKAEAEAEKKAKEEAK-KQAEEEAKAKAAAEAKKKAA 169
Query: 202 EKEVIPKLTFKFGTDMEEKTKRE 224
E + + K + + K K E
Sbjct: 170 EAKKKAEAEAKAKAEAKAKAKAE 192
Score = 44.8 bits (106), Expect = 5e-05
Identities = 30/129 (23%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
+ ++ +K+ +++ +K K ++ + ++K+K+ ++ K K E K K E + +K+
Sbjct: 84 RAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKK 143
Query: 148 EKEFKMK----EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK----KKKKEKERS 199
KE K E K K + +K+ +++K+ +++ K K K K K K K E ++
Sbjct: 144 AKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKA 203
Query: 200 SHEKEVIPK 208
E K
Sbjct: 204 KAAAEAAAK 212
Score = 41.7 bits (98), Expect = 4e-04
Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 2/126 (1%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNK-EKDKEKKIDKEKEKGKKEEKEK 139
K+ + +K K+ E+ + ++ +K ++ K K + + K + E EK KEE +K
Sbjct: 91 QKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKK 150
Query: 140 K-EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ EE+ K + K+ E + + + +E + K+K ++ K K E K K +
Sbjct: 151 QAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAA 210
Query: 199 SSHEKE 204
+ E E
Sbjct: 211 AKAEAE 216
Score = 41.7 bits (98), Expect = 5e-04
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 96 KKEKEKIKKKK---DKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
K+ E K + +KK K++ K + +++ K + K K E +KK E E K + E K
Sbjct: 127 KQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAK 186
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
K E+ K + + E +K + + + ++K E
Sbjct: 187 AKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERKADE 231
Score = 29.8 bits (67), Expect = 2.9
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKD--KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
K+++ K+ ++ K K + KKK KK + + + + K E+ K K E +
Sbjct: 144 AKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKA 203
Query: 140 KEEKE--KKEEKEFKMKEDKEK 159
K E K E E E
Sbjct: 204 KAAAEAAAKAEAEAAAAAAAEA 225
Score = 28.6 bits (64), Expect = 5.8
Identities = 20/75 (26%), Positives = 30/75 (40%), Gaps = 3/75 (4%)
Query: 88 KKDKKTHKKKEKEKIKKKK-DKKDKDKIKNKEKDKEKKIDKEKEKGKKEE--KEKKEEKE 144
K ++ K+ E+E K + K K K+ + E K E + K E K K E +
Sbjct: 143 KAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAK 202
Query: 145 KKEEKEFKMKEDKEK 159
K E K + E
Sbjct: 203 AKAAAEAAAKAEAEA 217
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 49.1 bits (118), Expect = 3e-06
Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 8/167 (4%)
Query: 73 TSSEDLGEIKKDKSIKKDKKTH------KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID 126
SS++L E K+ I + K+H ++ KE+ K++ +++ K + + + ++
Sbjct: 15 VSSKELLEKLKELGI--EVKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEA 72
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
K + +E E E +++ +P E + K + KK K K KK
Sbjct: 73 KAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKK 132
Query: 187 EKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKP 233
K K + K + + + +++ E P+ V+ P
Sbjct: 133 PKRKAARGGKRGKGGKGRRRRRGRRRRRKKKKKQKPTEKIPREVVIP 179
Score = 44.1 bits (105), Expect = 1e-04
Identities = 26/143 (18%), Positives = 56/143 (39%), Gaps = 3/143 (2%)
Query: 25 DKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKD 84
V ++ + K ++E+ + +E + + E + E
Sbjct: 36 STVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEE---EAKAEAAAAAPAEEAAEAAAAA 92
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
++ + + + E ++ K K K K K+KK ++ +G K K K +
Sbjct: 93 EAAARPAEDEAARPAEAAARRPKAKKAAKKKKGPKPKKKKPKRKAARGGKRGKGGKGRRR 152
Query: 145 KKEEKEFKMKEDKEKPVEKIRKE 167
++ + + K+ K+KP EKI +E
Sbjct: 153 RRGRRRRRKKKKKQKPTEKIPRE 175
Score = 37.9 bits (89), Expect = 0.011
Identities = 18/106 (16%), Positives = 42/106 (39%)
Query: 99 KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKE 158
K ++ + + + EK KE I+ + EE+E ++E+ K+E +E E +E
Sbjct: 3 KVRVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAEE 62
Query: 159 KPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ +E K ++ + + ++ ++ E
Sbjct: 63 AAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAE 108
Score = 36.8 bits (86), Expect = 0.021
Identities = 22/131 (16%), Positives = 50/131 (38%), Gaps = 10/131 (7%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKD-----KKDKDKIKNKEKDKEKKIDKEKEKGKKEEK 137
+ + K KE ++K K+ K ++ +E KE E ++ +EE
Sbjct: 2 SKVRVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKE-----EAKREAEEEA 56
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+ + E+ E E + K + E + E ++ + + + ++ K
Sbjct: 57 KAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKA 116
Query: 198 RSSHEKEVIPK 208
+ + +K+ PK
Sbjct: 117 KKAAKKKKGPK 127
Score = 31.0 bits (71), Expect = 1.5
Identities = 23/148 (15%), Positives = 49/148 (33%), Gaps = 4/148 (2%)
Query: 112 DKIKNKEKDKEKKIDKEK--EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE-- 167
K++ E KE + ++ EK K+ E K EE+E + +E K + E+ + E
Sbjct: 2 SKVRVYELAKELGVSSKELLEKLKELGIEVKSHSSTVEEEEARKEEAKREAEEEAKAEAE 61
Query: 168 EKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSP 227
E + + ++ + + + + + + ++++
Sbjct: 62 EAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPAEDEAARPAEAAARRPKAKKAAK 121
Query: 228 KIVIKPVKSPSPPPVAAADEYDTGDSKQ 255
K K P AA K
Sbjct: 122 KKKGPKPKKKKPKRKAARGGKRGKGGKG 149
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 49.2 bits (117), Expect = 3e-06
Identities = 29/133 (21%), Positives = 74/133 (55%)
Query: 92 KTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF 151
K ++++ + +D++++ + +E +KE++I + K KEE+++K+ +E++ +
Sbjct: 234 KLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLA 293
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTF 211
K +E+ + + K+ + + D E++ K +K+ K +++LKK+K+E E E + +
Sbjct: 294 KEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKRE 353
Query: 212 KFGTDMEEKTKRE 224
+ E+ K +
Sbjct: 354 AEEEEEEQLEKLQ 366
Score = 47.7 bits (113), Expect = 9e-06
Identities = 33/125 (26%), Positives = 66/125 (52%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
EI + ++ +KK +E+ K K++++ K + +K+D E++ + E++ K
Sbjct: 266 EILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELK 325
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
K EKE K+EKE + +KE +I++E ++ E+E+ K ++K + E+ KK+ E
Sbjct: 326 KLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESE 385
Query: 200 SHEKE 204
Sbjct: 386 RLSSA 390
Score = 45.7 bits (108), Expect = 4e-05
Identities = 32/118 (27%), Positives = 63/118 (53%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E K+ K +++ K K+E+E + + + ++ + +K K+ EK K+EKE+
Sbjct: 278 EEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEE 337
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
EE EK+ ++ +E +E+ E++ K ++ E+ ++ KKL+ E+L K KE
Sbjct: 338 IEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKE 395
Score = 44.2 bits (104), Expect = 1e-04
Identities = 32/162 (19%), Positives = 75/162 (46%)
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
+ + L E + K++++ + K + +K D++ + + + K EK++ K
Sbjct: 274 ENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKK 333
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
EKE+ ++ EKE KE + K+E +E + ++ ++ + + EE+ K+K ++ K
Sbjct: 334 EKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKL 393
Query: 188 KLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKI 229
K ++ + + E K ++ + EEK + +
Sbjct: 394 KEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEE 435
Score = 43.0 bits (101), Expect = 3e-04
Identities = 27/126 (21%), Positives = 70/126 (55%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+K+ + +++K K E+EK +K K ++++ + +E +E ++ +E++ ++E++
Sbjct: 772 LKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKI 831
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
KEE+ ++ E K ++ EK E+ + ++ +++ + ++E ++K K++ S
Sbjct: 832 KEEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELES 891
Query: 200 SHEKEV 205
EKE
Sbjct: 892 KEEKEK 897
Score = 42.6 bits (100), Expect = 3e-04
Identities = 27/147 (18%), Positives = 68/147 (46%), Gaps = 8/147 (5%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIK--------KKKDKKDKDKIKNKEKDKEKKI 125
L E K K + E+E + +++ ++ +++++++ E
Sbjct: 199 QELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSK 258
Query: 126 DKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 185
+ +++ + + KE KE+++EK+ + +E K E+ + + + E++ D ++KLK
Sbjct: 259 QELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLK 318
Query: 186 KEKLKKKKKEKERSSHEKEVIPKLTFK 212
+ + + KK EKE ++E+
Sbjct: 319 ESEKELKKLEKELKKEKEEIEELEKEL 345
Score = 42.3 bits (99), Expect = 4e-04
Identities = 24/144 (16%), Positives = 60/144 (41%), Gaps = 1/144 (0%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
+ E + K ++K ++ +E+ + K + + + ++ + +KE++ ++E
Sbjct: 900 KKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEE 959
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
E+ K KEE + EK + KD K+++ +++ K+L +E +++ +
Sbjct: 960 EERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQR 1019
Query: 196 KERSSHEKEVIPKLTFKFGTDMEE 219
+ E V E
Sbjct: 1020 FKE-FLELFVSINRGLNKVFFYLE 1042
Score = 42.3 bits (99), Expect = 4e-04
Identities = 37/179 (20%), Positives = 90/179 (50%)
Query: 48 KEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKD 107
K + + ++++ + + K+ ++ K + + K ++KIK+K++
Sbjct: 692 KNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEE 751
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
+++K ++K +E+++EK KEK EE+EK E+ + +EEKE K+K +E+ +
Sbjct: 752 EEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEEL 811
Query: 168 EKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESS 226
++++E ++ + ++ +K K ++ ++ E+++ + EE TK E
Sbjct: 812 KEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEELERLEEEITKEELL 870
Score = 42.3 bits (99), Expect = 5e-04
Identities = 26/140 (18%), Positives = 68/140 (48%), Gaps = 2/140 (1%)
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
N+ ++ + ++++ K ++ KK + + ++ + +++ K ++ + +
Sbjct: 185 NLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQ 244
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK--EEKDSEKEKKSKDKDKKLK 185
E + ++EE E +++ +KEE+ + K EK +K EE+ K+ ++ +L
Sbjct: 245 ELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 304
Query: 186 KEKLKKKKKEKERSSHEKEV 205
K + +K E++ EKE+
Sbjct: 305 KLERRKVDDEEKLKESEKEL 324
Score = 41.9 bits (98), Expect = 5e-04
Identities = 16/111 (14%), Positives = 51/111 (45%)
Query: 94 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM 153
K+K+KE++KK ++ + + ++ K + + ++ K+ E + KEK E +E +
Sbjct: 168 EKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENL 227
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ + R + + ++ + ++ + +++ + +++E
Sbjct: 228 LYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEE 278
Score = 41.1 bits (96), Expect = 0.001
Identities = 27/154 (17%), Positives = 78/154 (50%), Gaps = 7/154 (4%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
++L ++++ ++ K++E K++K+++ + K +E++ + +E+E +
Sbjct: 243 LQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSE 302
Query: 135 EEKEK----KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
K + +E++ KE ++ K +KE +K ++E ++ EKE K + ++ ++E+ +
Sbjct: 303 LLKLERRKVDDEEKLKESEKELKKLEKEL--KKEKEEIEELEKELKELEIKREAEEEEEE 360
Query: 191 KKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRE 224
+ +K +E+ +E + K ++ +
Sbjct: 361 QLEKLQEKLEQLEEEL-LAKKKLESERLSSAAKL 393
Score = 41.1 bits (96), Expect = 0.001
Identities = 38/152 (25%), Positives = 81/152 (53%), Gaps = 1/152 (0%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKI-KNKEKDKEKKIDKEKEKGK 133
+ ++ ++ +K+ +K KK EKE K+K++ ++ +K K E +E + ++E++ K
Sbjct: 305 KLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEK 364
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
+EK ++ E+E +K+ + + K + E +E+EK++K + ++E+ K+
Sbjct: 365 LQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKE 424
Query: 194 KEKERSSHEKEVIPKLTFKFGTDMEEKTKRES 225
++KE +E+ L K G EEK + E
Sbjct: 425 EKKEELKIVEELEESLETKQGKLTEEKEELEK 456
Score = 40.7 bits (95), Expect = 0.001
Identities = 25/148 (16%), Positives = 71/148 (47%), Gaps = 3/148 (2%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ ++ +++ + +E+ ++ + + + +E+ + +++ ++EK K+E+KE
Sbjct: 844 KEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESKEEKEKEEKKEL 903
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK---EKLKKKKKEK 196
+EE +K E K E +E+ E+ K + ++ ++ K+ + +++++
Sbjct: 904 EEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERN 963
Query: 197 ERSSHEKEVIPKLTFKFGTDMEEKTKRE 224
+R KE + + + EEK +R
Sbjct: 964 KRLLLAKEELGNVNLMAIAEFEEKEERY 991
Score = 39.6 bits (92), Expect = 0.003
Identities = 26/123 (21%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
KK++ K ++T E I ++ K + K+K + K + +++ +EE
Sbjct: 170 RKKKERLKKLIEETENLAELI-IDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLL 228
Query: 140 KEEKEKKEEKEFKMKEDKEKP-VEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ K E+ + ++ + E+I +++ EKE++ + K KE+ K+KK ++E
Sbjct: 229 YLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEE 288
Query: 199 SSH 201
Sbjct: 289 LKL 291
Score = 39.2 bits (91), Expect = 0.004
Identities = 30/133 (22%), Positives = 68/133 (51%), Gaps = 3/133 (2%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
+ E+L + K+ IK++ + ++++ EK+++K ++ +++ + K+ + E+ K
Sbjct: 334 EKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKL 393
Query: 131 KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
K ++ E + +EEKE K E +E+ K K+E+ E+ + + K K +
Sbjct: 394 KEEELELKNEEEKEAKLLLELSEQEEDLL---KEEKKEELKIVEELEESLETKQGKLTEE 450
Query: 191 KKKKEKERSSHEK 203
K++ EK+ K
Sbjct: 451 KEELEKQALKLLK 463
Score = 36.1 bits (83), Expect = 0.034
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 3/125 (2%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKK---DKDKIKNKEKDKEKKIDKEKEKGKKEE 136
KK ++ K KE+E K +++K ++ +E+D K+ KE+ K +E
Sbjct: 377 LAKKKLESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEEL 436
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+E E K+ K +E + E + + K + E K SE K K L++ +L +++
Sbjct: 437 EESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKL 496
Query: 197 ERSSH 201
E +S
Sbjct: 497 EEASQ 501
Score = 34.2 bits (78), Expect = 0.16
Identities = 15/80 (18%), Positives = 31/80 (38%)
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
+EK K K+ K+ EE E E ++E K + ++ + +K E + + + +
Sbjct: 165 GSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEE 224
Query: 185 KKEKLKKKKKEKERSSHEKE 204
+ K E +
Sbjct: 225 ENLLYLDYLKLNEERIDLLQ 244
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 47.4 bits (113), Expect = 1e-05
Identities = 29/132 (21%), Positives = 72/132 (54%), Gaps = 2/132 (1%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
E++ E++ + S+ +++ + E E+++++ ++ K+KI+ +++ E++ +E ++
Sbjct: 294 KEEIEELEGEISLLRERLEELENELEELEER-LEELKEKIEALKEELEERETLLEEL-EQ 351
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
E +E KE+ EEK + E+ E+ E +R+E + E E + + K +++ ++
Sbjct: 352 LLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411
Query: 195 EKERSSHEKEVI 206
ER S E +
Sbjct: 412 RLERLSERLEDL 423
Score = 44.3 bits (105), Expect = 1e-04
Identities = 27/129 (20%), Positives = 69/129 (53%), Gaps = 1/129 (0%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
+ + ++ K +KE E+++++ + +++ + +E+ +E + + E+ K + EE ++
Sbjct: 224 ELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREEL 283
Query: 142 EKEKKEEKEFK-MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
E+ ++E E K E+ E + +R+ ++ E E + ++ + KEK++ K+E E
Sbjct: 284 EELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERE 343
Query: 201 HEKEVIPKL 209
E + +L
Sbjct: 344 TLLEELEQL 352
Score = 41.2 bits (97), Expect = 0.001
Identities = 26/138 (18%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK-------EKKIDK 127
E+L E +K+ K + + +E+ + +++ + K++I+ E + E+ ++
Sbjct: 259 QEELEEAEKEIEELKSEL-EELREELEELQEELLELKEEIEELEGEISLLRERLEELENE 317
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
+E ++ E+ K++ + KEE E + +E EE E E+K ++L++
Sbjct: 318 LEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEEL 377
Query: 188 KLKKKKKEKERSSHEKEV 205
+++ E + E+
Sbjct: 378 FEALREELAELEAELAEI 395
Score = 38.9 bits (91), Expect = 0.005
Identities = 20/117 (17%), Positives = 56/117 (47%), Gaps = 4/117 (3%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
+ + + KE+ + K ++ +++ +++ +++ E + + E +E K E E E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
E+ E + +E +++E K+ E E + + + E+L++ +++ E +
Sbjct: 411 ER----LERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLK 463
Score = 38.5 bits (90), Expect = 0.006
Identities = 20/116 (17%), Positives = 65/116 (56%), Gaps = 1/116 (0%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
++ ++ E++ + K++ ++ + + + +++++E E+ ++E +E +E E+ EE+
Sbjct: 708 RRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEEL 767
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDK-DKKLKKEKLKKKKKEKERSSHEKEV 205
++E K E+I + E+ + ++ ++ +++L++ + + E+E S E+
Sbjct: 768 ESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRR 823
Score = 38.5 bits (90), Expect = 0.006
Identities = 26/152 (17%), Positives = 76/152 (50%), Gaps = 3/152 (1%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKE-KKIDKEKEKG 132
E+ ++ ++ + K K++ + K+++ ++ ++ + +E +K+ +K++++ EK
Sbjct: 153 KPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEK- 211
Query: 133 KKEEKEKKEEKEKKEEKEFKMK-EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
+ +E K E + E K ++ K +E++ +E E+E + ++ + ++++++
Sbjct: 212 AERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEE 271
Query: 192 KKKEKERSSHEKEVIPKLTFKFGTDMEEKTKR 223
K E E E E + + + ++EE
Sbjct: 272 LKSELEELREELEELQEELLELKEEIEELEGE 303
Score = 38.5 bits (90), Expect = 0.006
Identities = 22/126 (17%), Positives = 65/126 (51%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
E+++ + + ++ +E++++ + + ++ K + +E +E + +E+ KEE E
Sbjct: 239 KELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIE 298
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ E + + + E++ + +E+ +E K+ + K + ++++ E+L++ E E
Sbjct: 299 ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358
Query: 199 SSHEKE 204
+ E E
Sbjct: 359 AKEELE 364
Score = 38.2 bits (89), Expect = 0.008
Identities = 24/139 (17%), Positives = 71/139 (51%), Gaps = 15/139 (10%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE------ 135
+ K +++ ++ + E+E + +++ ++ +K + K + +++ +E E+ ++E
Sbjct: 236 ELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKE 295
Query: 136 -----EKEKKEEKEKKEEKEFKMKE----DKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
E E +E+ EE E +++E +E + +E+ E+E ++ ++ L +
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAE 355
Query: 187 EKLKKKKKEKERSSHEKEV 205
+ K++ E++ S+ +E+
Sbjct: 356 LEEAKEELEEKLSALLEEL 374
Score = 37.4 bits (87), Expect = 0.015
Identities = 26/142 (18%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDK--------IKNKEKDKEKKIDKEKE 130
GEI + ++ + ++ +E++++ K+K + K + + + ++++ KE
Sbjct: 302 GEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKE 361
Query: 131 KGKKEEKEKKEEKEKK--------EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
+ +++ EE E+ E E ++ E + + +E++++E + E+ + +
Sbjct: 362 ELEEKLSALLEELEELFEALREELAELEAELAEIRNE-LEELKREIESLEERLERLSERL 420
Query: 183 KLKKEKLKKKKKEKERSSHEKE 204
+ KE+LK+ + E E E E
Sbjct: 421 EDLKEELKELEAELEELQTELE 442
Score = 37.0 bits (86), Expect = 0.018
Identities = 24/130 (18%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
E+L ++ + + +++ EK ++ ++ K + + K + KE +
Sbjct: 185 EENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEEL 244
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
EE+ + E+E +E +E + +KE +E+++ E + E ++ ++ ++L + K + ++
Sbjct: 245 EEELSRLEEELEELQEELEEAEKE--IEELKSELE--ELREELEELQEELLELKEEIEEL 300
Query: 195 EKERSSHEKE 204
E E S +
Sbjct: 301 EGEISLLRER 310
Score = 36.2 bits (84), Expect = 0.031
Identities = 22/119 (18%), Positives = 64/119 (53%), Gaps = 2/119 (1%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKE-KKIDKEKEKGKKEEKEKKEEKEKKE 147
K K + ++ +++ + + ++ + + +E +E +++E E+ + +E +EE E+ E
Sbjct: 691 KSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELE 750
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK-KLKKEKLKKKKKEKERSSHEKEV 205
E+ +++E E+ E++ E+ K K+ ++ + K + + + ++ E+E E+ +
Sbjct: 751 EELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRL 809
Score = 36.2 bits (84), Expect = 0.032
Identities = 26/134 (19%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
+ L E+++ + + K+E ++++ ++ + +++ E++ E+ +++E E+ +
Sbjct: 700 LEDLLEELRRQLEELERQLEELKRELAALEEEL-EQLQSRLEELEEELEE-LEEELEELQ 757
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKP---VEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
+ +E +EE E EE K+KE+ E+ + +++E ++ E+E + ++ + +L+
Sbjct: 758 ERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELE 817
Query: 191 KKKKEKERSSHEKE 204
++ +ER E E
Sbjct: 818 SLEQRRERLEQEIE 831
Score = 35.1 bits (81), Expect = 0.080
Identities = 24/131 (18%), Positives = 72/131 (54%), Gaps = 1/131 (0%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKD-KIKNKEKDKEKKIDKEKEKGK 133
E+L +++ +++ ++E E+++++ ++ +++ + + K K+ +E E+ +
Sbjct: 729 EEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKR 788
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
+ +E+ EE E++ E+ + + E+ +E + + + E+E + +++ + +EKL + +
Sbjct: 789 QALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELE 848
Query: 194 KEKERSSHEKE 204
+E E E E
Sbjct: 849 EELEELEKELE 859
Score = 33.5 bits (77), Expect = 0.21
Identities = 21/131 (16%), Positives = 77/131 (58%), Gaps = 5/131 (3%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
E+L +++ + K++ +++++ ++++ ++ ++ + ++ E+++D + + +
Sbjct: 764 EEELESLEEALAKLKEEIEELEEKRQALQEELEELEE-----ELEEAERRLDALERELES 818
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
E+ ++ +++ EE E +++E +EK E + E+ ++ ++ K++ ++L+ EK + + +
Sbjct: 819 LEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDE 878
Query: 195 EKERSSHEKEV 205
KE ++E+
Sbjct: 879 LKELEEEKEEL 889
Score = 33.5 bits (77), Expect = 0.23
Identities = 25/142 (17%), Positives = 76/142 (53%), Gaps = 13/142 (9%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKE--KKIDKEKEKGK 133
L E++++ +++ ++ E+++++ + ++ K KE+ +E +K +E+ +
Sbjct: 737 SRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELE 796
Query: 134 KEEKEKKEEKEKKEEKEFKMK------EDKEKPVEKIRKEEKDSEKEKKSKDK-----DK 182
+ E+E +E + + + E +++ E E+ +E++ +E ++ E++ ++ +K
Sbjct: 797 ELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEK 856
Query: 183 KLKKEKLKKKKKEKERSSHEKE 204
+L++ K + ++ E E+ E E
Sbjct: 857 ELEELKEELEELEAEKEELEDE 878
Score = 32.8 bits (75), Expect = 0.36
Identities = 23/121 (19%), Positives = 70/121 (57%), Gaps = 3/121 (2%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
E L E++++ + + K+E E+++ +K++ + + + +E+ ++++++E + + E
Sbjct: 842 EKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEE--KEELEEELRELESE 899
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK-EEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
E KEE EK E+ +++ E+ ++ + EE+ E+ + + + + + + E+L+++ +
Sbjct: 900 LAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIE 959
Query: 195 E 195
Sbjct: 960 A 960
Score = 32.4 bits (74), Expect = 0.52
Identities = 29/136 (21%), Positives = 75/136 (55%), Gaps = 6/136 (4%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEK-----DKEKKIDKEK 129
E+L E ++ + + ++ +E+++++ ++ +++ + +EK ++ ++++KE
Sbjct: 799 EEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKEL 858
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
E+ K+E +E + EKE + E E K E++++ +E+ +E + E K + + + + E+L
Sbjct: 859 EELKEELEELEAEKE-ELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEEL 917
Query: 190 KKKKKEKERSSHEKEV 205
+ K + E E E
Sbjct: 918 EAKLERLEVELPELEE 933
Score = 31.6 bits (72), Expect = 1.00
Identities = 24/139 (17%), Positives = 75/139 (53%), Gaps = 10/139 (7%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEK----EKIKKKKDKKDK-----DKIKNKEKDKEKKID 126
E+L E++K+ K++ + EK +++K+ +++K++ +++++ + +++I+
Sbjct: 849 EELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIE 908
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK- 185
K +E+ ++ E + + + + E E +++E+ E +E + E + +E+ L+
Sbjct: 909 KLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRA 968
Query: 186 KEKLKKKKKEKERSSHEKE 204
E+ ++ ++ E ++E
Sbjct: 969 IEEYEEVEERYEELKSQRE 987
Score = 30.8 bits (70), Expect = 1.5
Identities = 22/105 (20%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 106 KDKKDKDKIKNKEKDKEKKID---KEKEKGKKEEKEKKEEKEKKEEKEFKMK---EDKEK 159
++K+ K + K+ E+++ + EK ++E K K E E+ +++ E+ E+
Sbjct: 657 RNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELER 716
Query: 160 PVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+E++++E E+E + + +E+L++ ++E E E
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLE 761
Score = 30.8 bits (70), Expect = 1.8
Identities = 17/122 (13%), Positives = 57/122 (46%), Gaps = 9/122 (7%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKE----KEKIKKKKDKKDKDKIKNKEKDKE-KKIDKEK 129
+L E+K++ +++ + KE++K+ + + ++ + + +E ++E ++++++
Sbjct: 396 RNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQL 455
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
E+ + KE + E + +E+ EK + + E E+++ + + +
Sbjct: 456 EELRDRLKELERELAELQEELQ----RLEKELSSLEARLDRLEAEQRASQGVRAVLEALE 511
Query: 190 KK 191
Sbjct: 512 SG 513
>gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau;
Validated.
Length = 605
Score = 46.8 bits (111), Expect = 1e-05
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIKK--KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
L K + SIK +KKT + KK ++ +K+ + K K K+K +
Sbjct: 368 LENKKIEISIKPEKKTINNSQIITTKKINIVEESNKNSVHFDTLYKTKIFYH-KKKINQN 426
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
KE+ +KE+ EKEF + EK + + ++K +KD +L K L+K K
Sbjct: 427 NKEQDIKKEELLEKEFV--KKSEKIPKNDELLDNLELAKQKFFNKDIELSKNMLQKFNKF 484
Query: 196 KERSSHEKEVI 206
K S E I
Sbjct: 485 KNEESAENSFI 495
Score = 31.7 bits (72), Expect = 0.74
Identities = 44/216 (20%), Positives = 75/216 (34%), Gaps = 29/216 (13%)
Query: 8 PQPLVHPPGTPPPSKMKDKVSPKDKTS------PKEKMSSKEKTSPKEKEYSKVKDVELG 61
P+ +K + V +K S K K+ +K + + +K EL
Sbjct: 379 PEKKTINNSQIITTKKINIVEESNKNSVHFDTLYKTKIFYHKKKINQNNKEQDIKKEELL 438
Query: 62 VTPMVPNIVKVTSS---EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE 118
V K+ + D E+ K K KD + K ++K K+++ +N
Sbjct: 439 EKEFVKKSEKIPKNDELLDNLELAKQKFFNKDIEL----SKNMLQKFNKFKNEESAENSF 494
Query: 119 KDKEKKIDKEK-----------EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
D K+ D E E K + + K K +K K V I K+
Sbjct: 495 IDIIKQADLVLWVSPNALILGVEDLGLIELINKVNESFEFIKTIFKKFNKNKLVIAISKK 554
Query: 168 EK----DSEKEKKSKDKDKKLKKEKLKKK-KKEKER 198
+ + + +K + + + LK KKEK R
Sbjct: 555 QATKITNIKNQKLKTNIINDVDIDDLKMLIKKEKTR 590
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 46.6 bits (111), Expect = 1e-05
Identities = 24/94 (25%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 92 KTHKK---KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
KTH+K K +EKIK K + + K + + ++ + + + EK + + K+++
Sbjct: 273 KTHEKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKK 332
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
KE K +E K+K +E++ + + E + K+++K
Sbjct: 333 KEKKKEEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 42.7 bits (101), Expect = 2e-04
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
+KS++K ++ K + + + KK + I + ++ + K +++ EK E KEKK+EK
Sbjct: 276 EKSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEK 335
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
KKEEK+ K E E+ +EK+ + D E+ K
Sbjct: 336 -KKEEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 37.7 bits (88), Expect = 0.009
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
++KI K + K K+ E + + K+K E+ EK+ E K+ +KEKK ++K
Sbjct: 283 QEKI-KALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKK 341
Query: 182 KKL------KKEKLKKKKKEKE 197
KK + EKL+ + +KE
Sbjct: 342 KKQIERLEERIEKLEVQATDKE 363
Score = 37.7 bits (88), Expect = 0.009
Identities = 18/60 (30%), Positives = 35/60 (58%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
+K K E++ K + K+K K K KE+ K+K+I++ +E+ +K E + +++E K
Sbjct: 308 DLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENKT 367
Score = 36.6 bits (85), Expect = 0.019
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
EK + K + + + ++ KK F+M D ++ ++ K E+D+EK + KK KK+
Sbjct: 280 EKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKS--KFERDNEKLDAEVKEKKKEKKK 337
Query: 188 KLKKKKK 194
+ KKKK+
Sbjct: 338 EEKKKKQ 344
Score = 34.2 bits (79), Expect = 0.100
Identities = 22/81 (27%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
+ L K K K+ K K ++D +K+ + K+K+K+ KE++K K+
Sbjct: 287 KALKYQLKRLKKMILLFEMISDLKRKL-KSKFERDNEKLDAEVKEKKKEKKKEEKKKKQ- 344
Query: 136 EKEKKEEKEKKEEKEFKMKED 156
E+ EE+ +K E + KE+
Sbjct: 345 -IERLEERIEKLEVQATDKEE 364
Score = 31.9 bits (73), Expect = 0.51
Identities = 13/63 (20%), Positives = 34/63 (53%)
Query: 143 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
+EK + ++++K K+ + + + + K + ++KL E +KKK++K+ +
Sbjct: 283 QEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKK 342
Query: 203 KEV 205
K++
Sbjct: 343 KQI 345
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 46.6 bits (111), Expect = 2e-05
Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 3/219 (1%)
Query: 8 PQPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVP 67
P K K+K K +K S + + + + D +
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNS 1220
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
+ E+ K S+K+ K K + D + K K+ K++
Sbjct: 1221 SGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSA 1280
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
+ K E + K+K +++ +K+KKS+ K + KK
Sbjct: 1281 VQYSPPPPSKRPDGESNGGSKPS---SPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKS 1337
Query: 188 KLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESS 226
K + K+ +SS K ++ ++ ++ + S
Sbjct: 1338 KTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDS 1376
Score = 41.6 bits (98), Expect = 7e-04
Identities = 30/166 (18%), Positives = 56/166 (33%), Gaps = 2/166 (1%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
+ EI K++ +K K K ++ KKK+KK K +K K + ++ ++
Sbjct: 1147 VEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEK 1206
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
K + KK +ED E+ K +K K KK+ ++
Sbjct: 1207 RKLDDKPDNKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLS 1266
Query: 196 KERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPP 241
KE K +++ + + + KP
Sbjct: 1267 KEGKP--KNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKV 1310
Score = 40.0 bits (94), Expect = 0.002
Identities = 30/153 (19%), Positives = 52/153 (33%), Gaps = 2/153 (1%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
K K+ K K K K+KEK KKK K K D++++ K + +K
Sbjct: 1161 KTKGKASKLRKP--KLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKS 1218
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
+E + + K +K K K +K++ + + + + K K +
Sbjct: 1219 NSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRV 1278
Query: 201 HEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKP 233
+ P K + SSP
Sbjct: 1279 SAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVK 1311
Score = 38.9 bits (91), Expect = 0.005
Identities = 28/126 (22%), Positives = 58/126 (46%)
Query: 104 KKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEK 163
K+K +K +++ KEK+ EK + + E+ +K EE +++E+ + + KE+ ++
Sbjct: 1101 KEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKS 1160
Query: 164 IRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKR 223
K + ++ K K K+KK KK K KK + ++ + +K+
Sbjct: 1161 KTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNS 1220
Query: 224 ESSPKI 229
S +
Sbjct: 1221 SGSDQE 1226
Score = 36.6 bits (85), Expect = 0.026
Identities = 31/163 (19%), Positives = 58/163 (35%), Gaps = 10/163 (6%)
Query: 15 PGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTS 74
P ++K K + K+S S + S + K + K V P +
Sbjct: 1235 PKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPDG 1294
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
+ G + KK KK + KKKK + K K K K + K+ + +
Sbjct: 1295 ESNGGSKPSSPTKKKVKKRLEGSLAAL-KKKKKSEKKTARKKKSKTRVKQ-ASASQSSRL 1352
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
+ +K++ + E + + D E++D E ++
Sbjct: 1353 LRRPRKKKSDSSSEDDDDSEVDDS--------EDEDDEDDEDD 1387
Score = 32.3 bits (74), Expect = 0.60
Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 2/153 (1%)
Query: 9 QPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPN 68
+P K S +D SKE + P+
Sbjct: 1234 KPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNAPKRVSAVQYSPPPPSKRPD 1293
Query: 69 IVKVTSSEDLGEIKK--DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID 126
S+ KK K ++ KKK+K + K + KK K ++K + ++
Sbjct: 1294 GESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRVKQASASQSSRLL 1353
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 159
+ K K + + ++ + ++ E + ED E
Sbjct: 1354 RRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDED 1386
Score = 31.2 bits (71), Expect = 1.4
Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 28/184 (15%)
Query: 82 KKDKSIKKDKK-----THKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
K K + K+ K K K+K +K ++++ ++ E D E D E+E G
Sbjct: 1031 AKKKDLVKELKKLGYVRFKDIIKKKSEKITAEEEEGAEEDDEADDE---DDEEELGAAVS 1087
Query: 137 -------------KEKKEE-KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
KEK E+ + E+KE ++++ K + + E+ D +E + ++
Sbjct: 1088 YDYLLSMPIWSLTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEV 1147
Query: 183 KLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPV 242
+ K+ +++ K K + K PKL +EK K++SS K + V
Sbjct: 1148 EEKEIAKEQRLKSKTKGKASKLRKPKLK------KKEKKKKKSSADKSKKASVVGNSKRV 1201
Query: 243 AAAD 246
+ +
Sbjct: 1202 DSDE 1205
Score = 30.0 bits (68), Expect = 2.6
Identities = 39/195 (20%), Positives = 73/195 (37%), Gaps = 26/195 (13%)
Query: 78 LGEIKKDKSIKKDKK---THKKKEKEKIKKKKDK---KDKDKIKNKEKDKEKKIDKEKEK 131
LG+++++ + +K H + I K K K+ K+ K EK
Sbjct: 1001 LGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKIT 1060
Query: 132 GKKEEKEKKEEKEKKEEKEFKMKEDKE------KP--------VEKIRKE--EKDSEKEK 175
++EE +++++ E+ E ++ P VEK+ E +K+ E EK
Sbjct: 1061 AEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNAELEKKEKELEK 1120
Query: 176 KSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVK 235
K + E L K ++ E +E + + KTK ++S K K
Sbjct: 1121 LKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRL----KSKTKGKASKLRKPKLKK 1176
Query: 236 SPSPPPVAAADEYDT 250
++AD+
Sbjct: 1177 KEKKKKKSSADKSKK 1191
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 45.3 bits (108), Expect = 3e-05
Identities = 23/70 (32%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
+ K+ +++E+KI K E+ ++EE ++K+E++KKEE+E K+ K P E+ + E
Sbjct: 255 PEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKL--AKLSPEEQRKLE 312
Query: 168 EKDSEKEKKS 177
EK+ +K+ +
Sbjct: 313 EKERKKQARK 322
Score = 38.0 bits (89), Expect = 0.007
Identities = 27/85 (31%), Positives = 51/85 (60%), Gaps = 10/85 (11%)
Query: 112 DKIKNKE--KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEK 169
DK+ N + + +K+DK +E+ +EEK K +E+++E+ + KE+K+K E+ K K
Sbjct: 246 DKLANLKLSPEVLRKVDKTREE--EEEKILKAAEEERQEEAQEKKEEKKK-EEREAKLAK 302
Query: 170 DSEKEKKSKDKDKKLKKEKLKKKKK 194
S +E++ K +KE+ K+ +K
Sbjct: 303 LSPEEQR-----KLEEKERKKQARK 322
Score = 36.8 bits (86), Expect = 0.015
Identities = 17/68 (25%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE---KEF 151
+ K+ K ++++++ +K E++++++ ++KE+ KKEE+E K K EE E
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313
Query: 152 KMKEDKEK 159
K ++ + +
Sbjct: 314 KERKKQAR 321
Score = 36.1 bits (84), Expect = 0.027
Identities = 17/62 (27%), Positives = 39/62 (62%), Gaps = 5/62 (8%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
++ +K K +++ +E+ ++KK++K K++ + K K+ E+++ K EEKE+K++
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEE----REAKLAKLSPEEQR-KLEEKERKKQA 320
Query: 144 EK 145
K
Sbjct: 321 RK 322
Score = 34.5 bits (80), Expect = 0.082
Identities = 20/69 (28%), Positives = 44/69 (63%), Gaps = 6/69 (8%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK---EEKEK 139
+ ++K KT +++E++ +K ++++ + + +EK +EKK ++ + K K EE+ K
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQE---EAQEKKEEKKKEEREAKLAKLSPEEQRK 310
Query: 140 KEEKEKKEE 148
EEKE+K++
Sbjct: 311 LEEKERKKQ 319
Score = 28.4 bits (64), Expect = 7.2
Identities = 18/65 (27%), Positives = 39/65 (60%), Gaps = 10/65 (15%)
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK-----KEKLKKKK 193
+K +K ++EE+E +K +E+ R+EE +KE+K K++ + +E+ K ++
Sbjct: 259 RKVDKTREEEEEKILKAAEEE-----RQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEE 313
Query: 194 KEKER 198
KE+++
Sbjct: 314 KERKK 318
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 44.0 bits (104), Expect = 4e-05
Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
D++ KK + ++ + ++ K+++K +DKE K D EKE + EE+ ++E++E +
Sbjct: 45 AADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSD 104
Query: 148 EKEFKMKEDKEKPVEKIRKE 167
E E KE +EK + KE
Sbjct: 105 ENE---KETEEKTESNVEKE 121
Score = 37.8 bits (88), Expect = 0.005
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 73 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKK-KDKKDKDKIKNKEKDKEKKIDKEKEK 131
S + + ++ K + ++ KE+ K+ + +DK +++D+E + + E+E
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Query: 132 GKKEEKEKKEEKEKKEEKEFKMKEDKE-KPV 161
+ ++ +KE +EK E K + KPV
Sbjct: 100 EESSDENEKETEEKTESNVEKEITNPSWKPV 130
Score = 36.3 bits (84), Expect = 0.018
Identities = 21/88 (23%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 119 KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
++ E+E K +++E E +E KEE++ + ++ +K E++D E E++++
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKE--DKGDAEKEDEESEEENE 96
Query: 179 DKDKKLKKEKLKKKKKEKERSSHEKEVI 206
++ + ++ +K+ +EK S+ EKE+
Sbjct: 97 -EEDEESSDENEKETEEKTESNVEKEIT 123
Score = 35.5 bits (82), Expect = 0.026
Identities = 20/78 (25%), Positives = 42/78 (53%), Gaps = 2/78 (2%)
Query: 104 KKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEK 163
D+ D+ + K+ D ++ + E+ K +++E E+KE K + E + +E +E+ +
Sbjct: 39 SPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE--NE 96
Query: 164 IRKEEKDSEKEKKSKDKD 181
EE E EK++++K
Sbjct: 97 EEDEESSDENEKETEEKT 114
Score = 33.9 bits (78), Expect = 0.10
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 99 KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK--EEKEKKEEKEFKMKED 156
+++ K + + E+ ++EKE E+KE K EKE +E +E +ED
Sbjct: 40 PSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEED 99
Query: 157 KEKPVEKIRKE-EKDSEKEKKS 177
+E E ++ EK +K
Sbjct: 100 EESSDENEKETEEKTESNVEKE 121
Score = 30.9 bits (70), Expect = 0.85
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
K + ++ EI++ K +K+ + KE + +K+D + E++ E++ ++ +
Sbjct: 52 KKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKED-------EESEEENEEEDEESSD 104
Query: 131 KGKKEEKEKKEEKEKKE 147
+ +KE +EK E +KE
Sbjct: 105 ENEKETEEKTESNVEKE 121
Score = 29.7 bits (67), Expect = 1.9
Identities = 10/66 (15%), Positives = 32/66 (48%)
Query: 132 GKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
++ +E+E K+ + + E +E E+ + +++K +K+ + +E+ ++
Sbjct: 38 SSPSDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEE 97
Query: 192 KKKEKE 197
+ +E
Sbjct: 98 EDEESS 103
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 45.0 bits (107), Expect = 5e-05
Identities = 23/150 (15%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 69 IVKVTSSEDLGEIKKDKSIKKDKKTHK--------------KKEKEKIKKKKDKKDKDKI 114
IV + ++ + +I I D + + E+E++K + +++
Sbjct: 772 IVSLFNNPNAEKILIITEILSDGINNSDINDRPQELIDQIIESEEERLKALRIQRE---E 828
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
++ + I++E++ K+E K + E ++ EE+ + E+K + VE +K ++
Sbjct: 829 MLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKKLNKLI 888
Query: 175 KKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
K + K+ ++ + +
Sbjct: 889 IAKDVLIKLVISSDEIKQDEKTTKKKKKDL 918
Score = 42.7 bits (101), Expect = 3e-04
Identities = 24/118 (20%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
D+ I+ +++ K ++ + ++ + I ++K+ +++I E + ++ E+E +
Sbjct: 808 IDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNI 867
Query: 143 KEKKEEKEFKMKEDKEKPVEKI---RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
E K E + K D +K + I K + K +K KK+K +K ++E
Sbjct: 868 NENKNEF-VEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDEE 924
Score = 39.7 bits (93), Expect = 0.003
Identities = 22/109 (20%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Query: 42 KEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEK 101
+ K ++E ++ EL + +K +L EI+ +++ + + + E
Sbjct: 818 RLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQ---EAEEEIQNINENKNEF 874
Query: 102 IKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
++ K D K +K+ KD K+ ++ K++EK K++K+ E+ +
Sbjct: 875 VEFKNDPKKLNKLII-AKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTD 922
Score = 34.3 bits (79), Expect = 0.12
Identities = 21/121 (17%), Positives = 51/121 (42%), Gaps = 6/121 (4%)
Query: 42 KEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEK 101
++ E+E K ++ M P +++ + E ++ K + + +++ +
Sbjct: 808 IDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNI 867
Query: 102 IKKKK---DKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKE 158
+ K + K+ K NK + + K ++ K++EK K++K+ K D+E
Sbjct: 868 NENKNEFVEFKNDPKKLNKLIIAKDVLIK---LVISSDEIKQDEKTTKKKKKDLEKTDEE 924
Query: 159 K 159
Sbjct: 925 A 925
Score = 33.1 bits (76), Expect = 0.27
Identities = 18/100 (18%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
I++++ + + ++ E++K K++ K + +I+ E++ + + + E + + KK
Sbjct: 824 IQREEMLMRPEELELINEEQKNLKQEIKLELSEIQEAEEEIQNINENKNEFVEFKNDPKK 883
Query: 141 EEK--------EKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
K K ++K+D++ +K + EK E
Sbjct: 884 LNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLEKTDE 923
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 45.0 bits (106), Expect = 6e-05
Identities = 31/129 (24%), Positives = 69/129 (53%), Gaps = 8/129 (6%)
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
DL E + + K+ ++ ++ +K++I K ++ D DK++ ++K++ K
Sbjct: 202 DLKERESQEDAKRAQQLKEELDKKQIDADKAQQKADF-AQDNADKQRDEVRQKQQEAKNL 260
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE-EKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
+ + KE+K ++ E++++ +EK + E +K+ E+ K+KD K LK++ K
Sbjct: 261 PKPADTSSPKEDK--QVAENQKREIEKAQIEIKKNDEEALKAKDH----KAFDLKQESKA 314
Query: 196 KERSSHEKE 204
E+ + +KE
Sbjct: 315 SEKEAEDKE 323
Score = 43.1 bits (101), Expect = 2e-04
Identities = 24/129 (18%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ K++ KK K ++K + K +D+++ K+++ + KE+K+
Sbjct: 216 QQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQV 275
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
E ++++ EK + ++ K K+ K + +++SK +K+ + ++L+ +KK + +
Sbjct: 276 AENQKREIEKAQIEIKKNDEEALK-AKDHKAFDLKQESKASEKEAEDKELEAQKKREPVA 334
Query: 200 SHEKEVIPK 208
++ P+
Sbjct: 335 EDLQKTKPQ 343
Score = 35.7 bits (82), Expect = 0.046
Identities = 23/101 (22%), Positives = 54/101 (53%), Gaps = 4/101 (3%)
Query: 82 KKDKSIKKDKKTHKKKEKEKI---KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
++ K++ K T KE +++ +K++ +K + +IK +++ K D + K+E K
Sbjct: 255 QEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKA 314
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD 179
++E E KE + K +E + ++K K + +++ ++D
Sbjct: 315 SEKEAEDKELEAQKKREPVAEDLQKT-KPQVEAQPTSLNED 354
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 44.2 bits (105), Expect = 1e-04
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
K K E +E++EE + + E + K K++ ++ +EK+ DK + L K +
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLE 284
Query: 189 LKKKKKEKERSSHEKEVIPKLTFKF 213
+ K+KK++E EK P T F
Sbjct: 285 ILKEKKDEELFWFEK---PWPTLLF 306
Score = 38.8 bits (91), Expect = 0.006
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
K KE + EE+E++ + E + E K + +++ + EKE K +D +
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLE 284
Query: 187 EKLKKKKKEK 196
+KK +E
Sbjct: 285 ILKEKKDEEL 294
Score = 36.5 bits (85), Expect = 0.024
Identities = 19/76 (25%), Positives = 38/76 (50%), Gaps = 9/76 (11%)
Query: 93 THKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE-----KEKKEEKEKKE 147
T K KE + ++++++ D + E E K K++++G EE E+KE+ +K E
Sbjct: 223 TKKLKETSETEEREEETDVEI----ETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTE 278
Query: 148 EKEFKMKEDKEKPVEK 163
+ + ++K E
Sbjct: 279 DLDKLEILKEKKDEEL 294
Score = 33.4 bits (77), Expect = 0.24
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNK-EKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
KK K+T + +E+E+ + + + K E++ + D +KE+ +K E+ +K
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKL 283
Query: 147 EEKEFKMKEDK---EKP 160
E + K E+ EKP
Sbjct: 284 EILKEKKDEELFWFEKP 300
Score = 31.5 bits (72), Expect = 0.82
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLT 210
F K+ KE + R+EE D E E S+ K K+E+ +++ S EKE K
Sbjct: 221 FFTKKLKETSETEEREEETDVEIETTSETK--GTKQEQEGSTEEDPSLFSEEKEDPDKTE 278
Query: 211 FKFGTDMEEKTKRESS 226
++ ++ K E
Sbjct: 279 DLDKLEILKEKKDEEL 294
Score = 31.1 bits (71), Expect = 1.1
Identities = 15/71 (21%), Positives = 30/71 (42%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
KK K + ++ ++ + E + K K + + ++ +EKE K E K
Sbjct: 224 KKLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKL 283
Query: 142 EKEKKEEKEFK 152
E K+++ E
Sbjct: 284 EILKEKKDEEL 294
Score = 30.0 bits (68), Expect = 2.7
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 143 KEKKEEKEFKMKED-KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
EK F + E K K + + E+K K ++ K +++K K K++EKER
Sbjct: 623 IEKTLFFSFDISELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKERI 680
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 42.9 bits (101), Expect = 1e-04
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
K+ + E EK K KDK +I NK ++K I+K K K + E + +K +EK+
Sbjct: 10 KRVVRALESEKYKANKDKG-NPEIYNKINSQDKAIEKFKLLIKAQMAE-RVKKLHSQEKK 67
Query: 151 FKMKEDKEKPVEKIRKEEKD 170
+ K+ K+K V +
Sbjct: 68 EEKKKPKKKKVPLQVNPAQL 87
Score = 39.8 bits (93), Expect = 0.001
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK-EKEKGKKEEKEKKE 141
+ KDK + K + K +K K IK + ++ KK+ EK++ KK+ K+KK
Sbjct: 19 EKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKKV 78
Query: 142 EKEKKEEKEFKMKE 155
+ + F E
Sbjct: 79 PLQVNPAQLFVDDE 92
Score = 39.4 bits (92), Expect = 0.002
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
E ++ K K+K + + ++K +EK + K E+ K ++ K+EK K KK
Sbjct: 16 LESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKK 75
Query: 194 KEKERSSHEKEV 205
K+ + ++
Sbjct: 76 KKVPLQVNPAQL 87
Score = 35.2 bits (81), Expect = 0.042
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK-PVEKIRKEEKDSEKEKKSKDK 180
+K K+KG E K ++K EK + + + V+K+ +EK EK+K K K
Sbjct: 18 SEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKKK 77
Score = 30.1 bits (68), Expect = 1.8
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
+ E ++ K K++ + E K +DK ++K KL K + ER
Sbjct: 14 RALESEKY---KANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKL 61
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 44.3 bits (105), Expect = 1e-04
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 116 NKEKDKEKKIDKEKEKGKKEEKEK--KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK 173
N ++ KKI+++K+ ++K + E +EEKE + + E EK E
Sbjct: 1493 NGNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSN 1552
Query: 174 EKKSKDKD-KKLKKEKLKKKKKEKERSSHEKEVIPKLTFKF 213
++K+ ++D + +K K KK+ K + E + K +F
Sbjct: 1553 QEKNIEEDYAESDIKKRKNKKQYKSNTEAELDFFLKRYLRF 1593
Score = 43.2 bits (102), Expect = 2e-04
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM-KEDKEKPVEKIRKEEKDSEK 173
K + K+ I ++K + E +EEKE + E + KE K + +EK+ E+
Sbjct: 1500 KKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEE 1559
Query: 174 EKKSKDKDKKLKKEKLKKKKKEKE 197
+ D KK K +K K E E
Sbjct: 1560 DYAESDI-KKRKNKKQYKSNTEAE 1582
Score = 37.0 bits (86), Expect = 0.020
Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 9/78 (11%)
Query: 82 KKDKSIKKDKKTH------KKKEKEKIKKKKDKKDKDKIKNKEKD---KEKKIDKEKEKG 132
KK I ++K ++EKE + + + DK+K N E +EK I+++ +
Sbjct: 1505 KKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAES 1564
Query: 133 KKEEKEKKEEKEKKEEKE 150
++++ K++ + E E
Sbjct: 1565 DIKKRKNKKQYKSNTEAE 1582
Score = 30.8 bits (70), Expect = 1.7
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 102 IKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
K + K D ++ K K K+KK K++E+ K+EEK + E E
Sbjct: 729 NGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
Score = 29.7 bits (67), Expect = 4.2
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 118 EKDKEKKI---DKEKEKGKKEEKEKKEEKEKKEEKE 150
KD E KI +EK K KK++++KKEE+ K+EEK
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKA 765
Score = 29.7 bits (67), Expect = 4.2
Identities = 12/41 (29%), Positives = 27/41 (65%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
K+ E ++++ +K KK+EK+K+EE +++E+ ++ E
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEIAE 771
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 43.5 bits (103), Expect = 1e-04
Identities = 24/107 (22%), Positives = 48/107 (44%), Gaps = 6/107 (5%)
Query: 87 IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
I++ K+ + + ++ K + DK K ++ + K K+ + K + E ++
Sbjct: 333 IEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEA 392
Query: 147 EE-----KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
K K + +K +E+IR+E + E KSK K +K K+
Sbjct: 393 IAYYESAKTALEKAEGKKAIEEIREELIE-EGLLKSKKKKRKKKEWF 438
Score = 37.8 bits (88), Expect = 0.010
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 107 DKKDKDKIKNKEKDKEKKIDKEKEKGKK--EEKEKKEEKEKKEEKEFKMKED-------- 156
+K ++DKIK + EKK++KE +K + E++E + E+ +K +E + K +
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQL 332
Query: 157 -KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 209
+E + +E+ K DK K + + KK K+ + + +L
Sbjct: 333 IEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQL 386
Score = 30.8 bits (70), Expect = 1.3
Identities = 14/66 (21%), Positives = 29/66 (43%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
++ + K+ K + + K E+ +E+ I++ K KK++++KKE
Sbjct: 377 GAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKE 436
Query: 142 EKEKKE 147
EK
Sbjct: 437 WFEKFR 442
Score = 30.8 bits (70), Expect = 1.3
Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
+ KK KK K + ++ + K+ K +K + +K + E+ +E
Sbjct: 366 QRYFKKYKKL-KGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGL 424
Query: 144 EKKEEKEFKMKEDKEKP 160
K ++K+ K KE EK
Sbjct: 425 LKSKKKKRKKKEWFEKF 441
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 43.4 bits (103), Expect = 1e-04
Identities = 31/151 (20%), Positives = 76/151 (50%), Gaps = 7/151 (4%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
K I + K ++ ++I ++ K+ + K + ++++ K + + ++E KE++ E
Sbjct: 20 KRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE-L 78
Query: 145 KKEEKEFKMKEDK-EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
++ E+ +E+ ++ +E + K+E++ EK++K +K EK ++ ++ E
Sbjct: 79 QRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL 138
Query: 204 EVIPKLTF-----KFGTDMEEKTKRESSPKI 229
E I LT ++EE+ + E++ I
Sbjct: 139 ERISGLTQEEAKEILLEEVEEEARHEAAKLI 169
Score = 38.8 bits (91), Expect = 0.005
Identities = 38/160 (23%), Positives = 87/160 (54%), Gaps = 27/160 (16%)
Query: 80 EIKKD-KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEK- 137
E KK+ +++KK+ K+E K++ + +++ K++ +N+ + E+++ + +EE
Sbjct: 40 EAKKEAETLKKEALLEAKEEVHKLRAELERELKER-RNELQRLERRLLQ------REETL 92
Query: 138 EKKEEKEKKEEKEFKMKED----KEKPVEKIRKEEKDSEKEKKSKDKDKK---LKKEKLK 190
++K E K+E+ + KE KEK +++ KEE+ E + +++ ++ L +E+ K
Sbjct: 93 DRKMESLDKKEENLEKKEKELSNKEKNLDE--KEEELEELIAEQREELERISGLTQEEAK 150
Query: 191 KK--KKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPK 228
+ ++ +E + HE + K ++EE+ K E+ K
Sbjct: 151 EILLEEVEEEARHEAAKLIK-------EIEEEAKEEADKK 183
Score = 38.0 bits (89), Expect = 0.008
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 102 IKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE-EKEKKEE--KEKKE-EKEFKMKEDK 157
++K+ +K + K ++ KE E KKE E KEE K + E E+E K + ++
Sbjct: 18 LRKRIAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNE 77
Query: 158 EKPVEK--IRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 205
+ +E+ +++EE K + K++ L+K++ + KEK E+E+
Sbjct: 78 LQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEEL 127
Score = 28.7 bits (65), Expect = 6.7
Identities = 29/111 (26%), Positives = 63/111 (56%), Gaps = 10/111 (9%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
++ E+ + K + KK++ +KKEKE K+K+ + KE++ E+ I +++E
Sbjct: 84 RLLQREETLDRKMESLDKKEENL-EKKEKELSNKEKN------LDEKEEELEELIAEQRE 136
Query: 131 KGKKEEKEKKEEKEKK--EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD 179
+ ++ +EE ++ EE E + + + K +++I +E K+ E +KK+K+
Sbjct: 137 ELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKE-EADKKAKE 186
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 42.0 bits (99), Expect = 1e-04
Identities = 30/110 (27%), Positives = 60/110 (54%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
K KK +E EK+KK+ ++K K K K K+ K+K DK+K+ KK++K +K+++++ E+
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAED 120
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
K + + + + + + + K + + +K + + KKE E
Sbjct: 121 KLEDLTKSYSETLSTLSELKPRKYALHKDIYQSRLDRKRRAEVAKKEAEE 170
Score = 38.9 bits (91), Expect = 0.002
Identities = 25/94 (26%), Positives = 50/94 (53%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
+ KKK K+ ++I+ +K+ E+K + +K K ++K+ K++ +K ++K+ K ++
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKD 114
Query: 158 EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
EK E ++ S E S + K +K L K
Sbjct: 115 EKEAEDKLEDLTKSYSETLSTLSELKPRKYALHK 148
Score = 37.4 bits (87), Expect = 0.005
Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 9/83 (10%)
Query: 119 KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
K K+K++ +E EK KKE EEK+K + K+ K K+ K+K K++KD +K+ KS+
Sbjct: 61 KKKKKELAEEIEKVKKE----YEEKQKWKWKKKKSKKKKDKD-----KDKKDDKKDDKSE 111
Query: 179 DKDKKLKKEKLKKKKKEKERSSH 201
KD+K ++KL+ K +
Sbjct: 112 KKDEKEAEDKLEDLTKSYSETLS 134
Score = 37.0 bits (86), Expect = 0.007
Identities = 20/69 (28%), Positives = 38/69 (55%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
KK K + ++ + KK+ +EK K K KK K K+K+KDK+ +K + K E++ + +
Sbjct: 62 KKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121
Query: 142 EKEKKEEKE 150
++ +
Sbjct: 122 LEDLTKSYS 130
Score = 36.2 bits (84), Expect = 0.014
Identities = 25/71 (35%), Positives = 38/71 (53%)
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
E K+KK+E ++ EK K E+K+K K +K +K +K+K KD K K EK +K+
Sbjct: 58 TEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKE 117
Query: 194 KEKERSSHEKE 204
E + K
Sbjct: 118 AEDKLEDLTKS 128
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 43.7 bits (104), Expect = 2e-04
Identities = 25/120 (20%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 95 KKKEKEKIKKKKDKKDK-DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE--KEKKEEKEF 151
+++ ++K ++ + + +K+K + ++K++K+ +E++K +E +++ ++ KE K+E +
Sbjct: 529 ERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADE 588
Query: 152 KMKEDKEKPVEKIR--KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 209
+KE ++ K + E K+ ++K +K+K K+K+K++E ++ L
Sbjct: 589 IIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSL 648
Score = 43.3 bits (103), Expect = 2e-04
Identities = 32/132 (24%), Positives = 68/132 (51%), Gaps = 18/132 (13%)
Query: 92 KTHKKKEKEKI---------KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
K ++KEK+ +++ ++ ++ + K+ EK ++ +EK +K ++E+ +
Sbjct: 508 KKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKL 567
Query: 143 KEKKEEK-EFKMKEDKEKPVEKIR------KEEKDSEKEKKSKDKDKKLKK--EKLKKKK 193
E+ E++ + +KE K++ E I+ K S K + + K+L K EK +KKK
Sbjct: 568 LEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKK 627
Query: 194 KEKERSSHEKEV 205
K+++ E +V
Sbjct: 628 KKQKEKQEELKV 639
Score = 35.6 bits (83), Expect = 0.057
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 43/159 (27%)
Query: 76 EDLGEIKKDKSIKKDKKTHK-----KKEKEKIKKK---KDKKDKDKIKNKE-KDKEKKID 126
E L E + + +K+ + KKE ++I K+ K +K E + K+++
Sbjct: 558 EKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEARKRLN 617
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFK------------------MKEDKEKPVE----KI 164
K E+KEKK++K+K++++E K + +DKE V+ K+
Sbjct: 618 K-----ANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGIMKM 672
Query: 165 RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
+ D EK +K K K+K KK K K +
Sbjct: 673 KVPLSDLEKIQKPK-------KKKKKKPKTVKPKPRTVS 704
Score = 35.6 bits (83), Expect = 0.057
Identities = 23/119 (19%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE-- 142
+ +++ + + KE K K++ ++K K K +E+ ++K +++ +++ ++ KE K+E
Sbjct: 530 RELEQKAEEAEALLKEAEKLKEELEEK-KEKLQEE-EDKLLEEAEKEAQQAIKEAKKEAD 587
Query: 143 ---KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
KE ++ ++ K + + RK + ++K+ K K K+++ +++ K +
Sbjct: 588 EIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKK----KKKQKEKQEELKVGDE 642
Score = 33.3 bits (77), Expect = 0.25
Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 33/154 (21%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKN--KEKDKEKKIDKEKEKGK------KEEKEKK 140
++KK ++E++K+ ++ +K+ + IK KE D+ K ++ +KG E E +
Sbjct: 554 EEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEAR 613
Query: 141 ----EEKEKKEEKEFKMKEDKEKPVE----KIRKEEKDSEKEKKSKDKD----------- 181
+ EKKE+K+ K KE +E+ K + E DK+
Sbjct: 614 KRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGIMKMK 673
Query: 182 ------KKLKKEKLKKKKKEKERSSHEKEVIPKL 209
+K++K K KKKKK K + V +L
Sbjct: 674 VPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSLEL 707
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 43.1 bits (101), Expect = 2e-04
Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 3/141 (2%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
+KK+ K K+KEK K+ +K++DK K KE + K + + E E
Sbjct: 196 EKKSKKPKKKEK---KEKEKERDKDKKKEVEGFKSLLLALDDSPASAASVAEADEASLAN 252
Query: 150 EFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 209
+P E E ++++K K K K ++ +KE+ KKKKK H + +
Sbjct: 253 TVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGGAEQ 312
Query: 210 TFKFGTDMEEKTKRESSPKIV 230
+ G EE SS K++
Sbjct: 313 PVQNGAVEEEPLPPMSSYKLL 333
Score = 28.9 bits (64), Expect = 5.3
Identities = 43/177 (24%), Positives = 79/177 (44%), Gaps = 8/177 (4%)
Query: 32 KTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKS-IKKD 90
K+SP K P E+ V ++L V VP + L E ++ + ++KD
Sbjct: 41 KSSPS---PQKRYQDPPGVEHIPVVQIDLSVPLKVPGLPMSDQYVKLEEERRHRQRLEKD 97
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
K+ KK+EKEK + ++ +++ + +D E+ + E+ + +
Sbjct: 98 KREKKKREKEK-RGRRRHHSLGTESDEDIAPAQMVDIVTEEMPENALPSDEDDKDPNDPY 156
Query: 151 FKMKEDKEKPV---EKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ D +KP+ EK+ ++ + + KS +K EK KK K+KE+ EKE
Sbjct: 157 RALDIDLDKPLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKE 213
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 43.3 bits (102), Expect = 2e-04
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 6/109 (5%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
+KK H+K +K+ K K KD K K K K KKI K+ + + K+
Sbjct: 48 INKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQK-KKIKKKLHIDDDYDNFFDSKNNSKQF 106
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
KP K + K+K + +K KK+K+ K E
Sbjct: 107 AGPLAISLMRKPKPK-----TEKLKKKITVNKSTNKKKKKVLSSKDELI 150
Score = 40.2 bits (94), Expect = 0.002
Identities = 34/142 (23%), Positives = 56/142 (39%), Gaps = 10/142 (7%)
Query: 74 SSEDLGEIKKDKSIK-KDKKTHKKKEKEKIKKK-----KDKKDKDKIKNKEKDKEKKIDK 127
SSE+ ++K IK ++K + + IK +KK +K+ K K K K D
Sbjct: 10 SSENTIDLKNPLFIKNLKHSSYKIRLESDIKDSLLNLDINKKLHEKLDKKNK-KFNKTDD 68
Query: 128 EKEKGKKEEKEKKEEK---EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
K+ K + K+KK+ K ++ + K K +K KK
Sbjct: 69 LKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKK 128
Query: 185 KKEKLKKKKKEKERSSHEKEVI 206
KK+K+ S + E+I
Sbjct: 129 ITVNKSTNKKKKKVLSSKDELI 150
Score = 34.8 bits (80), Expect = 0.079
Identities = 30/159 (18%), Positives = 51/159 (32%), Gaps = 18/159 (11%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEK-EKGKKEEKEKKEEKEKKE 147
+ T K IK K K ++++ KD +D K K ++K KK K
Sbjct: 10 SSENTIDLKNPLFIKNLKHSSYKIRLESDIKDSLLNLDINKKLHEKLDKKNKKFNKTDDL 69
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL------KKKKKEKERSSH 201
+ K K ++K ++K + D + SK+ K+ K K EK +
Sbjct: 70 KDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKI 129
Query: 202 EKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPP 240
K K++ + P
Sbjct: 130 TVNKSTN-----------KKKKKVLSSKDELIKYDNNKP 157
Score = 34.0 bits (78), Expect = 0.17
Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 1/102 (0%)
Query: 31 DKTSPKEKMSSKEKTSPKEKEYSKVK-DVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKK 89
DK + K + K S K K K K +L + N ++ S+ +
Sbjct: 57 DKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMR 116
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEK 131
K +K K+KI K K K KD+ K D K K
Sbjct: 117 KPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 32.9 bits (75), Expect = 0.34
Identities = 28/136 (20%), Positives = 45/136 (33%), Gaps = 7/136 (5%)
Query: 30 KDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSI-- 87
+S K ++ S K S + +K +L K ++DL + KK K
Sbjct: 26 LKHSSYKIRLESDIKDSLLNLDINKKLHEKLDKKNK-----KFNKTDDLKDSKKTKLKQK 80
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
KK KK + K +K + EK KK+ K +KK+
Sbjct: 81 KKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKK 140
Query: 148 EKEFKMKEDKEKPVEK 163
+ E + K
Sbjct: 141 KVLSSKDELIKYDNNK 156
Score = 31.7 bits (72), Expect = 0.75
Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 3/129 (2%)
Query: 67 PNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKK--DKKDKDKIKNKEKDKEKK 124
+I K + + KK K + K K K+K K KK D K+ K+
Sbjct: 46 LDINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQ 105
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEE-KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
+ + K EK KK+ + K+K + + K + KS
Sbjct: 106 FAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKSISIHSP 165
Query: 184 LKKEKLKKK 192
L ++L
Sbjct: 166 LTIQELSTL 174
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 42.8 bits (101), Expect = 2e-04
Identities = 25/117 (21%), Positives = 45/117 (38%)
Query: 34 SPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKT 93
S + K K P YS V + + ++ + KK+ + KK
Sbjct: 10 SFFSGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKK 69
Query: 94 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
+KK+K+K +KK+ K + + + K+ K K+K K ++ K E
Sbjct: 70 SEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELA 126
Score = 42.4 bits (100), Expect = 3e-04
Identities = 33/129 (25%), Positives = 49/129 (37%), Gaps = 8/129 (6%)
Query: 73 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKG 132
T L I S + + K K K ++K+ E K
Sbjct: 16 TQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESK-------- 67
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
KK EK+KK++KEKKE K + K +K +K +K K K ++D D K +
Sbjct: 68 KKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAE 127
Query: 193 KKEKERSSH 201
K +H
Sbjct: 128 KSNVYIGAH 136
Score = 40.9 bits (96), Expect = 0.001
Identities = 24/118 (20%), Positives = 42/118 (35%), Gaps = 1/118 (0%)
Query: 114 IKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK 173
+ + I KE E+E K K+ KE + +K+ + +K
Sbjct: 16 TQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKK 75
Query: 174 EKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEE-KTKRESSPKIV 230
+KK K + K + KL K +K + + +K PK + E S +
Sbjct: 76 KKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVYI 133
Score = 37.4 bits (87), Expect = 0.013
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 92 KTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF 151
+ K + I K+ + +++ K +K KKE+K + +K+ +++K
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKK-- 74
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
K+K +K K E +++ K+ K KK KK+ K K E ++ K
Sbjct: 75 -----KKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNK 121
Score = 33.2 bits (76), Expect = 0.23
Identities = 26/117 (22%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 118 EKDKEKKIDKEKE--KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
+K K + I +E +E+ + K+DK KE+K++E +K
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDK--------KEDKNNESKK 68
Query: 176 KSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIK 232
KS+ K KK KKEK + K + + + + K T K + +++ + +
Sbjct: 69 KSEKK-KKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAE 124
Score = 30.8 bits (70), Expect = 1.4
Identities = 18/109 (16%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 26 KVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDK 85
V K+ S + +K T+ +K+ + K+ E + K + + KK+
Sbjct: 32 LVLSKEILSTFSEEENKVATTSTKKDKKEDKNNE--------SKKKSEKKKKKKKEKKEP 83
Query: 86 SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
+ + K K K+ K KK ++ + K + ++
Sbjct: 84 KSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAEKSNVY 132
Score = 29.7 bits (67), Expect = 3.4
Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 3/98 (3%)
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
++ K + + K + EE E + + K K++K + KK+ E+
Sbjct: 17 QKSKLQPISYIYSNVLVLSKEILSTFSEE---ENKVATTSTKKDKKEDKNNESKKKSEKK 73
Query: 200 SHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSP 237
+K+ + + T + KT ++S P P
Sbjct: 74 KKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKP 111
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 43.0 bits (101), Expect = 3e-04
Identities = 26/99 (26%), Positives = 50/99 (50%), Gaps = 17/99 (17%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
+N+ + D+ +EK + EK+++K + E KE K+ + KE+ V + DS +
Sbjct: 4 RNRREANINNNDRMQEK----DDEKQDQKNRMELKE-KVLDKKEEVVT----DNVDSPVK 54
Query: 175 KKSKDKDKKLKKEKLKKKKKE--------KERSSHEKEV 205
++S ++ K+ E K K+E K + H+KE+
Sbjct: 55 EQSSQENLKIADEVKKSTKEESKQLLEVLKTKEEHQKEI 93
Score = 42.6 bits (100), Expect = 3e-04
Identities = 27/104 (25%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
+ + I N ++ +EK +K+ +K + E KEK ++KE + ++ + PV++ +
Sbjct: 5 NRREANINNNDRMQEKDDEKQDQKNRMELKEK-----VLDKKEEVVTDNVDSPVKEQSSQ 59
Query: 168 E--KDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE--KEVIP 207
E K +++ KKS ++ K E LK K++ ++ +E ++ IP
Sbjct: 60 ENLKIADEVKKSTKEESKQLLEVLKTKEEHQKEIQYEILQKTIP 103
Score = 40.7 bits (95), Expect = 0.001
Identities = 35/148 (23%), Positives = 68/148 (45%), Gaps = 19/148 (12%)
Query: 22 KMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEI 81
K +K K++ KEK+ K++ + S VK+ SS++ +
Sbjct: 20 KDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKE---------------QSSQE--NL 62
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
K +KK K K+ E +K K++ + +I+ + K + KE K+ ++ K
Sbjct: 63 KIADEVKKSTKEESKQLLEVLKTKEE--HQKEIQYEILQKTIPSFEPKESILKKLEDIKP 120
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEK 169
E+ KK+ K F++ E K+ P+ + E++
Sbjct: 121 EQAKKQTKLFRLFEPKQLPIYRANGEKE 148
Score = 38.4 bits (89), Expect = 0.008
Identities = 18/88 (20%), Positives = 51/88 (57%), Gaps = 2/88 (2%)
Query: 88 KKDKKTHKK-KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
+++ + + +EK +K+D+K++ ++K K DK++++ + +E+ +E +
Sbjct: 6 RREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIA 65
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
+E + KE+ ++ +E + K +++ +KE
Sbjct: 66 DEVKKSTKEESKQLLE-VLKTKEEHQKE 92
Score = 36.5 bits (84), Expect = 0.027
Identities = 28/116 (24%), Positives = 60/116 (51%), Gaps = 6/116 (5%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKK---KDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ ++K K+ +K +++ K DKK++ N + +++ +E K E K+
Sbjct: 12 NNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEVKKS 71
Query: 140 KEEKEKKEEKEFKMKEDKEKPVE-KIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
+E+ K+ + K KE+ +K ++ +I ++ S + K+S KKL+ K ++ KK
Sbjct: 72 TKEESKQLLEVLKTKEEHQKEIQYEILQKTIPSFEPKES--ILKKLEDIKPEQAKK 125
Score = 34.9 bits (80), Expect = 0.083
Identities = 36/145 (24%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK----EKKIDKEKEKGKKEEK 137
++K +K + ++ + KEK+ KK++ D + + K++ KI E +K KEE
Sbjct: 17 MQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEVKKSTKEES 76
Query: 138 EKKEE--KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
++ E K K+E ++ E +K + +E +K + K + K K+ KL + +
Sbjct: 77 KQLLEVLKTKEEHQKEIQYEILQKTIPSFEPKESILKKLEDIKPEQAK-KQTKLFRLFEP 135
Query: 196 KE----RSSHEKEVIPKLTFKFGTD 216
K+ R++ EKE+ + +K D
Sbjct: 136 KQLPIYRANGEKELRNRWYWKLKKD 160
Score = 31.8 bits (72), Expect = 0.77
Identities = 29/108 (26%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Query: 73 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKE-KKIDKEKEK 131
+D + +K++ K+K KK+E K++ +N + E KK KE+ K
Sbjct: 18 QEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEVKKSTKEESK 77
Query: 132 GKKEEKEKKEEKEKKEEKEFKMKEDKE-KPVEKIRKEEKDSEKEKKSK 178
E + KEE +K+ + E K +P E I K+ +D + E+ K
Sbjct: 78 QLLEVLKTKEEHQKEIQYEILQKTIPSFEPKESILKKLEDIKPEQAKK 125
Score = 31.1 bits (70), Expect = 1.4
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
Query: 167 EEKDSEKEK---KSKDKDKKLKKEKLKKKKK---EKERSSHEKEVIPKLTFKFGTDMEEK 220
D +EK K K++ KEK+ KK+ S KE + K ++++
Sbjct: 12 NNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEVKKS 71
Query: 221 TKRES 225
TK ES
Sbjct: 72 TKEES 76
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 42.0 bits (99), Expect = 4e-04
Identities = 25/123 (20%), Positives = 65/123 (52%), Gaps = 1/123 (0%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
K+ KE E+I ++ K+ ++K++ + ++ + +E+ + ++E + ++EE +++EE+
Sbjct: 27 KRQRLAKEAERILQEAQKEAEEKLEAALLEAKELLLRERNQQRQEARREREELQREEERL 86
Query: 151 FKMKEDKEKPVEKIR-KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 209
+ +E + EK+ E + E+EK ++ +L++ + + + + E KL
Sbjct: 87 VQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKL 146
Query: 210 TFK 212
K
Sbjct: 147 LLK 149
Score = 37.8 bits (88), Expect = 0.010
Identities = 20/113 (17%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 94 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK--EKEKGKKEEKEKKEEKEKKEEKEF 151
++++++ + ++++ +++++++ KE+ + + +K E +E ++ +E + E+
Sbjct: 66 NQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELE 125
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
K +++ V + E+ ++ K D +L++EK ++ KK +E + E E
Sbjct: 126 KQLDNELYRVAGLTPEQA---RKLLLKLLDAELEEEKAQRVKKIEEEADLEAE 175
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 42.3 bits (99), Expect = 5e-04
Identities = 29/139 (20%), Positives = 65/139 (46%), Gaps = 10/139 (7%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
E++ +I +D S ++K + +E + + + K ++ N E D K D K K+
Sbjct: 3890 EEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKD 3949
Query: 136 EKEKKEEKEKK------EEKEFKMKEDKEKPVEKIRK----EEKDSEKEKKSKDKDKKLK 185
+EK++E+E +E + ++E+ +P + E+ ++++ KD L+
Sbjct: 3950 RQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLE 4009
Query: 186 KEKLKKKKKEKERSSHEKE 204
++ + KE + EK+
Sbjct: 4010 DMDMEAADENKEEADAEKD 4028
Score = 28.8 bits (64), Expect = 7.0
Identities = 34/186 (18%), Positives = 76/186 (40%), Gaps = 7/186 (3%)
Query: 21 SKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDL-- 78
SK D + +DK +EK +E + + D++ + P + EDL
Sbjct: 3937 SKEDDNKALEDKDR-QEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKL 3995
Query: 79 ----GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
G++ KD ++ + KE+ +KD+ +D+ +E + + ++ +
Sbjct: 3996 DEKEGDVSKDSDLEDMDMEAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDL 4055
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
E ++K ++ EE + +E E V+ + E+ E ++ D K+ + +
Sbjct: 4056 AEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAE 4115
Query: 195 EKERSS 200
E ++
Sbjct: 4116 ADEENT 4121
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 41.1 bits (96), Expect = 7e-04
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
K+ EKE++K ++ +K ++ + K+ E+K +E+ + E++KK E K + K
Sbjct: 104 KQLEKERLKAQEQQKQAEEAE-KQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAK 162
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFG 214
+K +E + +E K+K + KK+ + K E++ E E K K
Sbjct: 163 LKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAE 222
Query: 215 TDMEEKTKRESSPK 228
EEK E
Sbjct: 223 AAAEEKAAAEKKKA 236
Score = 40.7 bits (95), Expect = 0.001
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 95 KKKEKEKIKKKKD-KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM 153
KK E K K + K K + K+K +E E+ K K E K++ E + + +
Sbjct: 147 KKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDKDK---KLKKEKLKKKKKEKERSSHEKEV 205
+ + + K K+ + + +EK + +K K K K +K K ER + +
Sbjct: 207 AKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAAAL 261
Score = 38.4 bits (89), Expect = 0.006
Identities = 24/107 (22%), Positives = 66/107 (61%), Gaps = 1/107 (0%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
K+ E+ +KKK+++ +++K K+ +++++ + +++ K ++++K+ +E +++ + + K+
Sbjct: 75 KKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQ 134
Query: 157 KEKPVEKIRKEEKDSEKEK-KSKDKDKKLKKEKLKKKKKEKERSSHE 202
+E+ + +++K +E K K+ + KLK KKK E+ + E
Sbjct: 135 EEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAE 181
Score = 37.2 bits (86), Expect = 0.013
Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 2/111 (1%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK--EEKEK 145
K ++ + +E EK + + K+ +++ + +++KK + K K E + K E +K
Sbjct: 112 KAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKK 171
Query: 146 KEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
K E+ K E+ + E ++K + K + +K K + K K +KK +
Sbjct: 172 KAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAE 222
Score = 34.5 bits (79), Expect = 0.088
Identities = 26/111 (23%), Positives = 45/111 (40%), Gaps = 1/111 (0%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
K ++ + ++K KK + K +E K + K K + + K +K E E
Sbjct: 153 KAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAE 212
Query: 131 KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
K EK+ + E+K E K K K +K K +E++ + D
Sbjct: 213 AKAKAEKKAEAAAEEKAAAEKKKAAAKAK-ADKAAAAAKAAERKAAAAALD 262
Score = 32.2 bits (73), Expect = 0.54
Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 1/114 (0%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
K + + + + K KKK +E K ++ K K + +K E + E
Sbjct: 146 KKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAE 205
Query: 131 KGKKEEKEK-KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
K K E + K K EK+ + E K +K+K K + ++ + + +
Sbjct: 206 KAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERKAAAA 259
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 41.6 bits (98), Expect = 7e-04
Identities = 40/143 (27%), Positives = 68/143 (47%), Gaps = 11/143 (7%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDK--KDKDKIKNKEKDKEKKIDKEKEK 131
S E+ E K++ + K + EKE KK K K++ K K + ++E+ D+E+ K
Sbjct: 407 SDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAK 466
Query: 132 GKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK---------DK 182
+K + + EK +++E + + D+E P K S K++ SK K +K
Sbjct: 467 VEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANK 526
Query: 183 KLKKEKLKKKKKEKERSSHEKEV 205
K KKKK+KE+S +
Sbjct: 527 ISKAAVKVKKKKKKEKSIDLDDD 549
Score = 37.3 bits (87), Expect = 0.015
Identities = 33/168 (19%), Positives = 65/168 (38%), Gaps = 1/168 (0%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
+++S +++ + KK + K + +K+ K K + K + +++K EE+E ++
Sbjct: 403 GEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKN-EFKEKKESDEEEELED 461
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
E+E K EK + + +K +EE+ E+ K K K + KK+
Sbjct: 462 EEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLD 521
Query: 202 EKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYD 249
+ ++K K +I S DE D
Sbjct: 522 KAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDDEEDEDD 569
Score = 35.4 bits (82), Expect = 0.058
Identities = 33/137 (24%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 66 VPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKI 125
+ + L +K + + KK E E+++++ + +++ + E+ +K +
Sbjct: 361 LKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNV 420
Query: 126 DKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 185
+ K + EKE + +K KKE K E KEK +E +D E+ K K +K LK
Sbjct: 421 GRRKFGPENGEKEAESKKLKKENKN----EFKEKKESDEEEELEDEEEAKVEKVANKLLK 476
Query: 186 KEKLKKKKKEKERSSHE 202
+ + +K++E+E E
Sbjct: 477 RSEKAQKEEEEEELDEE 493
Score = 35.4 bits (82), Expect = 0.058
Identities = 36/161 (22%), Positives = 68/161 (42%), Gaps = 6/161 (3%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
++E E+ KK + K +N EK+ E K K KE K + +EK++ +E+E E
Sbjct: 409 EEENEEPSKKNVGRRKFGPENGEKEAESKKLK------KENKNEFKEKKESDEEEELEDE 462
Query: 156 DKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGT 215
++ K + K K SEK +K +++++ ++ K +S+ +++ K + K
Sbjct: 463 EEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDK 522
Query: 216 DMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSKQV 256
+ +K K K KS +E
Sbjct: 523 AANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSIKLDVDD 563
Score = 33.9 bits (78), Expect = 0.19
Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 1/159 (0%)
Query: 24 KDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKK 83
+ K P++ E K++ + KE + + E + KV + K
Sbjct: 422 RRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKA 481
Query: 84 DKSIKKDKKTHKKKEKEKI-KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
K ++++ + + K K +D K +K +K + K +K+KK+E
Sbjct: 482 QKEEEEEELDEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKE 541
Query: 143 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
K + + +ED K ++E D E K KD
Sbjct: 542 KSIDLDDDLIDEEDSIKLDVDDEEDEDDEELPFLFKQKD 580
Score = 30.0 bits (68), Expect = 2.7
Identities = 35/154 (22%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
D E +D D + ++K+ K K+ +D ++ K + E K ++
Sbjct: 331 DSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQ-RAEARKKEE 389
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
+ E +E + + E +E +E+ E+P +K K + + + + KKLKKE + K+
Sbjct: 390 NDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKE 449
Query: 195 EKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPK 228
+KE S E+E+ + K + KR +
Sbjct: 450 KKE-SDEEEELEDEEEAKVEKVANKLLKRSEKAQ 482
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 41.0 bits (96), Expect = 8e-04
Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 1/96 (1%)
Query: 94 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK-KEEKEKKEEKEFK 152
+ K+ +K + K K +I K + E++I++E + + + + + + K+
Sbjct: 330 AEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKG 389
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
+ + EE + + +E
Sbjct: 390 LIDASPNEDTPSENEESKGSPPQVEATTTAEPNREP 425
Score = 39.4 bits (92), Expect = 0.003
Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 21/146 (14%)
Query: 90 DKKTHKKKEKEKIKKKKD--------KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
+K +KK ++ + + +N E K + +K + K +K KE
Sbjct: 295 REKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARK-----KE 349
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
+K+ E ++ ++E E+ + + K K K L + + E
Sbjct: 350 IAQKRRAAEREI--NREARQERAAAMARARARRAAVKAKKKGL-IDASPNEDTPSENEES 406
Query: 202 EKEVIPKLTFKFGTDMEEKTKRESSP 227
+ P++ + RE S
Sbjct: 407 KGSP-PQVE----ATTTAEPNREPSQ 427
Score = 33.7 bits (77), Expect = 0.17
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 80 EIKKD-KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID--KEKEKGKKEE 136
EIKK + K + K KK+ +K + + + +++ + + + + KK
Sbjct: 331 EIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGL 390
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD 179
+ ++ E E E K P + + +E +D
Sbjct: 391 IDASPNEDTPSENE----ESKGSPPQVEATTTAEPNREPSQED 429
Score = 31.7 bits (72), Expect = 0.68
Identities = 17/102 (16%), Positives = 41/102 (40%), Gaps = 4/102 (3%)
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+ KK +K E + + KE +K R+ +++ +E+ + + ++ +K KKK
Sbjct: 331 EIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGL 390
Query: 197 ERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPS 238
+S ++ + G+ + + + P S
Sbjct: 391 IDASPNEDTPSENEESKGSPPQVEATTTAEP----NREPSQE 428
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 40.9 bits (96), Expect = 9e-04
Identities = 30/124 (24%), Positives = 49/124 (39%), Gaps = 8/124 (6%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKE---KKIDKEKEKGKKEE 136
E KK + K+K+ E+ K K K + + K KK E +K + E
Sbjct: 115 EQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAE 174
Query: 137 KEKKEEKEKKEEKE----FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
KK E K++ E K + +K E K++ +E +KK+ + K K +
Sbjct: 175 AAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKA-AAEAKAAAAKAAAE 233
Query: 193 KKEK 196
K
Sbjct: 234 AKAA 237
Score = 40.6 bits (95), Expect = 0.001
Identities = 24/103 (23%), Positives = 45/103 (43%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
K+ EKE++ ++ KK ++ + K+K+ ++ K K K E + K+ K
Sbjct: 104 KQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKA 163
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+ K + +K + + KK + + K KKK E E
Sbjct: 164 AAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAE 206
Score = 39.8 bits (93), Expect = 0.002
Identities = 29/115 (25%), Positives = 57/115 (49%), Gaps = 2/115 (1%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
+ KS K+ ++ KKKE+++ ++ + K+ ++ + K+ +KE+ +E++K + EE K+
Sbjct: 70 QQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKK-QAEEAAKQAA 128
Query: 143 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
++K+ +E K K E K + K + K K E KK E
Sbjct: 129 LKQKQAEEAAAKA-AAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAE 182
Score = 38.2 bits (89), Expect = 0.007
Identities = 22/102 (21%), Positives = 51/102 (50%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
++++K K+ +++ K K + + ++ ++K E+E+ K+ EKE+ +E+K++ E K+
Sbjct: 68 QQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQA 127
Query: 157 KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
K + K + K + + K KK E ++
Sbjct: 128 ALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKK 169
Score = 35.9 bits (83), Expect = 0.032
Identities = 26/131 (19%), Positives = 48/131 (36%), Gaps = 8/131 (6%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDK---DKIKNKEKDKEKKIDKEKEKGKKEEKE 138
K+ +K + K K K + + K K + +KK + E K E +
Sbjct: 125 KQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAK 184
Query: 139 KKEEKEKK----EEKEFKMKEDKEKPVEKIRKEEKDSE-KEKKSKDKDKKLKKEKLKKKK 193
KK E E E + K + + +K K++ +E K +K + +
Sbjct: 185 KKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAA 244
Query: 194 KEKERSSHEKE 204
K E+++ K
Sbjct: 245 KAAEKAAAAKA 255
Score = 35.6 bits (82), Expect = 0.047
Identities = 25/115 (21%), Positives = 44/115 (38%), Gaps = 12/115 (10%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK---------KEEKEK 145
+ +E+ K+ ++ + +K K+ ++ K K E + K E +K
Sbjct: 110 RLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKK 169
Query: 146 KEEKEFKMK---EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
K E E K E K+K + + K+K + KK E KK E +
Sbjct: 170 KAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAK 224
Score = 34.0 bits (78), Expect = 0.12
Identities = 21/92 (22%), Positives = 35/92 (38%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
KK + KK + KKK + + K + K K + K+K + ++K E K
Sbjct: 169 KKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAA 228
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD 179
+ + K EK E+ + K D
Sbjct: 229 KAAAEAKAAAEKAAAAKAAEKAAAAKAAAEVD 260
Score = 33.6 bits (77), Expect = 0.16
Identities = 27/119 (22%), Positives = 44/119 (36%), Gaps = 4/119 (3%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
K K+ + K+ +K + KK + + K + K+K + K E K+K
Sbjct: 143 AAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
Query: 140 KE-EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
E E +KK E K K E K + +E + ++ EK K E
Sbjct: 203 AEAEAKKKAAAEAKKKAAAEA---KAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAAAE 258
Score = 33.2 bits (76), Expect = 0.21
Identities = 22/112 (19%), Positives = 57/112 (50%), Gaps = 1/112 (0%)
Query: 87 IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
++ +K+ K+ E+++ KKK+ ++ ++ + + ++E+ EKE+ +E++K+ E+ K
Sbjct: 67 QQQQQKSAKRAEEQR-KKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAK 125
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ + + ++ + K + K++ KK E KK + E +
Sbjct: 126 QAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAK 177
Score = 31.3 bits (71), Expect = 0.87
Identities = 18/103 (17%), Positives = 55/103 (53%)
Query: 126 DKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 185
E+++ KKE+++ +E ++K+ ++ ++K+ +++ + ++++ E K++ K K+ +
Sbjct: 76 RAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAE 135
Query: 186 KEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPK 228
+ K K ++ E + K + ++K + E++ K
Sbjct: 136 EAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKK 178
>gnl|CDD|227367 COG5034, TNG2, Chromatin remodeling protein, contains PhD zinc
finger [Chromatin structure and dynamics].
Length = 271
Score = 40.3 bits (94), Expect = 0.001
Identities = 45/244 (18%), Positives = 82/244 (33%), Gaps = 32/244 (13%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKE-KEKGKKEEKEKKEEKEKKE 147
D K + + KK D ++ E + KE +E K +KE+ + +
Sbjct: 31 IDAKVCDIIKNLRQMISILKKIIDLDSQTYEEVEDGLLKEIRELLLKAIYIQKEKSDLAD 90
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS-------S 200
E ++ ++ ++I K + + D + E+ + S S
Sbjct: 91 RAEKLLRRHRKLLDDRIAKRPHEKVAARIENCHDAVSRLERNSYSSAARRSSGEHRSAAS 150
Query: 201 HEKEVIPKLTFKFG------TDMEEKTKRESSPKIVIKPV----------KSPSPPPVAA 244
+ KL + E +KRE S + V +
Sbjct: 151 SQGSRHTKLKKRKNIHNLKRRSPELSSKREVSFTLESPSVPDTATRVKEGNNGGSTKSRG 210
Query: 245 ADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDA---WYHWVCVGLVAEPETSDWFCP 301
D + ++++ C Q M+ CD + W+H CVGL P+ W+CP
Sbjct: 211 VSSEDNSEGEELY----CFCQQVSYGQMVACDNANCKREWFHLECVGLKEPPKGK-WYCP 265
Query: 302 KCSK 305
+C K
Sbjct: 266 ECKK 269
>gnl|CDD|187861 cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as TM1802 family.
Length = 579
Score = 40.8 bits (96), Expect = 0.001
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 12/108 (11%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE----KDKEKKIDKEKEKGKKEEK 137
+K K T + +KIKK +K KE K+ + ++K EK K+ +
Sbjct: 82 PTNKITYLLKTT--EPLNKKIKKWFEKSYLLLESKKEILKLKNIKDVLEKNIEKILKDIQ 139
Query: 138 EKKEEK------EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD 179
+ K + + +K + ED E+ +K+ K++ +K+ K K
Sbjct: 140 DLKPGENVILTIKIDGKKLLEYDEDYEEFRDKVLKKKVFKDKKAKEKG 187
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 39.9 bits (93), Expect = 0.002
Identities = 27/103 (26%), Positives = 52/103 (50%)
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
E +++ +EE E+K++KE K KE + K ++ +KE K + +++ D KK +
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEK 64
Query: 190 KKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIK 232
K +K++ E + E + P F + + ++ SP V K
Sbjct: 65 KSRKRDVEDENPEDFIDPDTPFGQKKRLSSQMAKQYSPSAVEK 107
Score = 38.0 bits (88), Expect = 0.011
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
+K I +++ +KK+KE+ K+K+ K K+K +K+ + K+ ++ +K E+K
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELK---KLKAAQKEAKAKLQAQQASDGTNVPKKSEKK 65
Query: 144 EKKEEKEFKMKEDKEKP 160
+K + E + ED P
Sbjct: 66 SRKRDVEDENPEDFIDP 82
Score = 36.0 bits (83), Expect = 0.043
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 132 GKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
G + E E +++ +EE E K K++ EK EK K+ K ++KE K+K + ++
Sbjct: 1 GSRTESEAEKKILTEEELERKKKKE-EKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVP 59
Query: 192 KKKEKERSSHEKEV 205
KK EK+ + E
Sbjct: 60 KKSEKKSRKRDVED 73
Score = 33.3 bits (76), Expect = 0.30
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 113 KIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED----KEKPVEKIRKEE 168
KI +E+ + KK +EK K K+ +K K +KE K + + + D +K +K RK +
Sbjct: 11 KILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRD 70
Query: 169 KDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
+ E + D D ++K + K+ S
Sbjct: 71 VEDENPEDFIDPDTPFGQKKRLSSQMAKQYS 101
Score = 29.9 bits (67), Expect = 2.8
Identities = 19/69 (27%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 165 RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFK---FGTDMEEKT 221
R E + +K ++ ++K KKE+ K+K+ K+ + +KE KL + GT++ +K+
Sbjct: 3 RTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKS 62
Query: 222 KRESSPKIV 230
+++S + V
Sbjct: 63 EKKSRKRDV 71
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 40.2 bits (95), Expect = 0.002
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 1/100 (1%)
Query: 69 IVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKE 128
I+KV + + +KK K + K K ++K +K + D + K + ++++ D++
Sbjct: 127 IIKVNNEIERDHLKK-KHLPKLIKQYEKFGFGILKIDFEIDDSKEELEKFEAQKEEEDEK 185
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
K E +K E ++KK+ K F KE + +KI KEE
Sbjct: 186 LAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 37.1 bits (87), Expect = 0.018
Identities = 25/125 (20%), Positives = 54/125 (43%)
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
K S +KK K + K K E + KK K+ + + I K
Sbjct: 101 EKAKKNSPLFKSLLKKQKVEVEGNKLIIKVNNEIERDHLKKKHLPKLIKQYEKFGFGILK 160
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
+ ++E ++ + +KEE++ K+ ++ + ++K+ E+K K K+ ++ K+
Sbjct: 161 IDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKK 220
Query: 188 KLKKK 192
K++
Sbjct: 221 IDKEE 225
Score = 32.1 bits (74), Expect = 0.58
Identities = 31/139 (22%), Positives = 58/139 (41%), Gaps = 2/139 (1%)
Query: 87 IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
I+K KK + K+K + + I + E+ K+K K ++ +K
Sbjct: 100 IEKAKKNSPLFKSLLKKQKVEVEGNKLIIKVNNEIERDHLKKKHLPKLIKQYEKFGFGIL 159
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE--KERSSHEKE 204
+ +E + +KEE+D + K++ + KKL+ EK K+ K KE +
Sbjct: 160 KIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGK 219
Query: 205 VIPKLTFKFGTDMEEKTKR 223
I K ++ E+ +R
Sbjct: 220 KIDKEEITPMKEINEEERR 238
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 38.5 bits (89), Expect = 0.002
Identities = 21/87 (24%), Positives = 53/87 (60%), Gaps = 4/87 (4%)
Query: 98 EKEKIKKKKD----KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM 153
+K+ IKKKK ++ +K + + ++ E++++ E+ + K +E+E +EE+E++ E++
Sbjct: 111 KKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIE 170
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDK 180
++ + E I ++E ++E + +K
Sbjct: 171 EQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 35.4 bits (81), Expect = 0.024
Identities = 24/86 (27%), Positives = 49/86 (56%), Gaps = 4/86 (4%)
Query: 101 KIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK----EFKMKED 156
+I+ + KD IK K+ ++ EK + ++EE E++ E E++EEK E + +++
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
Query: 157 KEKPVEKIRKEEKDSEKEKKSKDKDK 182
+E+ + I ++ DSE E +D+ +
Sbjct: 162 REREEQTIEEQSDDSEHEIIEQDESE 187
Score = 31.6 bits (71), Expect = 0.45
Identities = 20/82 (24%), Positives = 53/82 (64%), Gaps = 3/82 (3%)
Query: 80 EIKKDKS--IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEK 137
+IKK KS I++++ ++E+E+++++ + + +++ ++ +D+E++ ++E+E+ EE+
Sbjct: 114 DIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQ-EREREEQTIEEQ 172
Query: 138 EKKEEKEKKEEKEFKMKEDKEK 159
E E E+ E + + D +K
Sbjct: 173 SDDSEHEIIEQDESETESDDDK 194
Score = 28.9 bits (64), Expect = 3.8
Identities = 19/88 (21%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 119 KDKEKKIDKEKEKGKKEE--KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
+D+ + + K+ K KK ++++ EK ++E +E + + + E+ EKI + E E+E++
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+++ + + + + + E++ S E +
Sbjct: 164 REEQTIEEQSDDSEHEIIEQDESETESD 191
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 40.0 bits (94), Expect = 0.003
Identities = 20/120 (16%), Positives = 43/120 (35%), Gaps = 10/120 (8%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK---IDKEKEKGKKEEK 137
+ K K K ++ + K +++ K + I+ E +E++
Sbjct: 116 LNKLKLKVKGNNILIEQVLNNPEFDHFKNKSPELQKKLQSFGFPQLLIEFEVNDISEEQE 175
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+K E+ E E ++ E + E+K + K + +K +K K +E
Sbjct: 176 FEKFEEAINE-------EVEKAAQEALEAEKKLKAESPKVEKPKPLFDGQKGRKIKSTEE 228
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 39.7 bits (93), Expect = 0.003
Identities = 28/163 (17%), Positives = 79/163 (48%), Gaps = 10/163 (6%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
++L E+ + + + +++ ++KE+ +++++ ++ +K+ + +E+ E +E K +
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEE 530
Query: 134 KEEKEKKEEKEKKEEKEFKMK----------EDKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
EEK +K E +E +E K K E ++++++ ++ + K++ ++
Sbjct: 531 LEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEE 590
Query: 184 LKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESS 226
L++ + KKK KE ++ L ++ E + +
Sbjct: 591 LRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEE 633
Score = 38.2 bits (89), Expect = 0.008
Identities = 25/148 (16%), Positives = 71/148 (47%), Gaps = 4/148 (2%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEK 137
L E+ K+ K ++ + E + + + ++++K +K +E + ++E+E+ ++E +
Sbjct: 176 LKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIE 235
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+E + EE E + E+ + + +I E ++ K ++ + ++ + L++ +++ E
Sbjct: 236 ALEERLAELEE-EKERLEELKARLLEIESLELEALKIREEELRELE---RLLEELEEKIE 291
Query: 198 RSSHEKEVIPKLTFKFGTDMEEKTKRES 225
R + I +L + + E
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEE 319
Score = 36.7 bits (85), Expect = 0.023
Identities = 25/124 (20%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEK-------- 131
+ K ++K + E++++ K+K ++K + + E ++ + KE
Sbjct: 523 LEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLR 582
Query: 132 GKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
+KEE E+ E+ K+ +K+ K E++ +E++ + + SE E + ++ +++L+ E K
Sbjct: 583 TRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKL 642
Query: 192 KKKE 195
+
Sbjct: 643 NLQA 646
Score = 36.3 bits (84), Expect = 0.028
Identities = 24/130 (18%), Positives = 69/130 (53%), Gaps = 4/130 (3%)
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
+ T E+L E+++ K K ++ ++++ + + +N+ ++ E++++
Sbjct: 578 LRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELES 637
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
E EK + + ++ + EE E K++E + +IR+E + E E++ ++K ++L++
Sbjct: 638 ELEKLNLQAELEELLQAALEELEEKVEELE----AEIRRELQRIENEEQLEEKLEELEQL 693
Query: 188 KLKKKKKEKE 197
+ + ++ +E
Sbjct: 694 EEELEQLREE 703
Score = 35.9 bits (83), Expect = 0.043
Identities = 31/150 (20%), Positives = 80/150 (53%), Gaps = 15/150 (10%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE-KDKEKKIDKEKEKGKK 134
E+L ++ ++ K +E+++K ++K +K + + +E +++ ++ K E+ K
Sbjct: 305 EELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLK 364
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEK--------------PVEKIRKEEKDSEKEKKSKDK 180
E +E+ EE EK+ EK + + E+ +E+I++E ++ EKE + ++
Sbjct: 365 ELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELER 424
Query: 181 DKKLKKEKLKKKKKEKERSSHEKEVIPKLT 210
+ + +E++KK +++ + ++ +I +L
Sbjct: 425 ELEELEEEIKKLEEQINQLESKELMIAELA 454
Score = 35.1 bits (81), Expect = 0.066
Identities = 28/161 (17%), Positives = 75/161 (46%), Gaps = 7/161 (4%)
Query: 49 EKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKD- 107
++ ++K L + + +K+ E + + +++ + ++ E+E + +++
Sbjct: 248 KERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEEL 307
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEK-----EKKEEKEKKEEKEFKMKEDKEKPVE 162
+ + ++ E+ EK E+ K EEK + EE +++ + K+ E++ K +E
Sbjct: 308 EGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELE 367
Query: 163 KIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
R EE + E EK + + + + K++ + ++ E+
Sbjct: 368 -ERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEE 407
Score = 35.1 bits (81), Expect = 0.078
Identities = 25/128 (19%), Positives = 67/128 (52%), Gaps = 3/128 (2%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
E L ++++ + + +EK ++ K +++ K +++ + ++ EK+++K E+ K+
Sbjct: 328 EERLEKLEEKLEKLESELEELAEEKNELAKLLEERLK-ELEERLEELEKELEKALERLKQ 386
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
E+ +E KE+ E ++E +E+ E ++ E+ + + + +++ K E+ + +
Sbjct: 387 LEEAIQELKEELAELSAALEEIQEELEELEKELEE--LERELEELEEEIKKLEEQINQLE 444
Query: 195 EKERSSHE 202
KE E
Sbjct: 445 SKELMIAE 452
Score = 34.4 bits (79), Expect = 0.13
Identities = 20/102 (19%), Positives = 60/102 (58%), Gaps = 3/102 (2%)
Query: 101 KIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK-KEEKEKKEEKEKKEEKEF--KMKEDK 157
++ ++ +K+ + + + ++ E+++ +EKE+ + +EE E+ E++ ++ E+E ++ ++
Sbjct: 466 ELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEE 525
Query: 158 EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
E K EK ++ ++ +KL+ ++LK++ ++ E
Sbjct: 526 ALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDR 567
Score = 34.4 bits (79), Expect = 0.13
Identities = 21/129 (16%), Positives = 67/129 (51%)
Query: 70 VKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEK 129
++ + L EI++++ ++ ++ + E+ + +++K+ +++K + + E +
Sbjct: 210 EELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEAL 269
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
+ ++E +E + E+ EEK +++E + + E + E ++ ++ +KLK +
Sbjct: 270 KIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEE 329
Query: 190 KKKKKEKER 198
+ +K E++
Sbjct: 330 RLEKLEEKL 338
Score = 33.2 bits (76), Expect = 0.33
Identities = 28/142 (19%), Positives = 68/142 (47%), Gaps = 17/142 (11%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKI---------------- 125
+ + +++ +K ++ E+E + +++ K ++ N+ + KE I
Sbjct: 407 EIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQE 466
Query: 126 -DKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
+E EK E E + E+ ++E K + + + +E++ KE ++ E+E + ++
Sbjct: 467 LPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEA 526
Query: 185 KKEKLKKKKKEKERSSHEKEVI 206
KE+L++K ++ E E E +
Sbjct: 527 LKEELEEKLEKLENLLEELEEL 548
Score = 32.4 bits (74), Expect = 0.51
Identities = 21/132 (15%), Positives = 61/132 (46%), Gaps = 1/132 (0%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
E L +++ ++ K + ++ K + ++ + ++K ++ +++E +
Sbjct: 532 EEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEEL 591
Query: 135 EEKEKKEEKEKKE-EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
E+ K+ +K+ KE E+ E+ + +E E + E E++ + + +KL + ++
Sbjct: 592 RERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEEL 651
Query: 194 KEKERSSHEKEV 205
+ E++V
Sbjct: 652 LQAALEELEEKV 663
Score = 30.9 bits (70), Expect = 1.5
Identities = 27/130 (20%), Positives = 61/130 (46%), Gaps = 7/130 (5%)
Query: 81 IKKDKSIKK---DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE-- 135
+K +K D+ +K ++ + K+ + K K +E + + E + E
Sbjct: 149 LKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEAL 208
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK--LKKEKLKKKK 193
E+E KE K+ +E +E + +E+ E+ +E + + + E+EK+ ++ K L+ E L+ +
Sbjct: 209 EEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEA 268
Query: 194 KEKERSSHEK 203
+ +
Sbjct: 269 LKIREEELRE 278
Score = 30.1 bits (68), Expect = 2.9
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
K K K +KE ++ EK E+ +KE ++ KI + E + + + + +
Sbjct: 150 KSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALE 209
Query: 187 EKLKKKKKEKERSSHEKEVI 206
E+LK+ KK +E ++E
Sbjct: 210 EELKELKKLEEIQEEQEEEE 229
Score = 29.7 bits (67), Expect = 3.3
Identities = 29/159 (18%), Positives = 74/159 (46%), Gaps = 34/159 (21%)
Query: 80 EIKKDK-------------SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKI- 125
+ K++ +++ +K ++ E+E + +++ K ++ N+ + KE I
Sbjct: 392 QELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIA 451
Query: 126 --------------------DKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIR 165
+KE + + E E+ EE+ +E++E +++E+ E+ +++R
Sbjct: 452 ELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELR 511
Query: 166 KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ E++ + + ++ K+ +EKL+K + E KE
Sbjct: 512 ELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550
Score = 29.7 bits (67), Expect = 3.7
Identities = 21/135 (15%), Positives = 70/135 (51%), Gaps = 1/135 (0%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
+L ++ +++ + ++ +EK+++ + + ++ + + +++ ++ +E E+ +E
Sbjct: 637 SELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQ-LEE 695
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
E E+ E+ ++ K+ E + +E + E ++ +KE + +K +L +E +K K
Sbjct: 696 ELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKALELLEELREKLGKA 755
Query: 196 KERSSHEKEVIPKLT 210
R+ + ++ ++
Sbjct: 756 GLRADILRNLLAQIE 770
Score = 29.3 bits (66), Expect = 4.8
Identities = 18/128 (14%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK- 134
+L E++++ +++ + ++ I + +K + +E +E + + + +
Sbjct: 424 RELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELEL 483
Query: 135 ---EEKEKKEEKEKKEEKEFKMKEDKEKPVEK--IRKEEKDSEKEKKSKDKDKKLKKEKL 189
EE+ +E++E + +E + E + + +E+ I E + +++ ++K +KL+
Sbjct: 484 EELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLE 543
Query: 190 KKKKKEKE 197
+ ++ +++
Sbjct: 544 ELEELKEK 551
Score = 29.3 bits (66), Expect = 4.9
Identities = 24/107 (22%), Positives = 56/107 (52%), Gaps = 1/107 (0%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
+ H+K+ E + + ++ +++ + KE+ + ++ +E EK +E +E+ E + EE
Sbjct: 468 PEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEAL 527
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+ E+K + +E EE + KEK + K+ ++ + ++ KE
Sbjct: 528 KEELEEKLEKLEN-LLEELEELKEKLQLQQLKEELRQLEDRLQELKE 573
Score = 29.0 bits (65), Expect = 5.6
Identities = 23/131 (17%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
+ + ++ +E+++ + +K + + + +EK + + E ++ ++ + EE+
Sbjct: 623 EAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQ 682
Query: 150 EFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL------KKEKLKKKKKEKERSSHEK 203
+ E+ E+ E++ + ++ E+ K + ++L +K +L++ KKE E+
Sbjct: 683 LEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLEKAL 742
Query: 204 EVIPKLTFKFG 214
E++ +L K G
Sbjct: 743 ELLEELREKLG 753
>gnl|CDD|220303 pfam09592, DUF2031, Protein of unknown function (DUF2031). This
protein is expressed in Plasmodium; its function is
unknown. It may be the product of gene family pyst-b.
Length = 228
Score = 38.5 bits (90), Expect = 0.003
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 18/110 (16%)
Query: 90 DKKTHK-----KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
DKKT K +KE E++KK+ D K ++ + ++K+I K K E
Sbjct: 107 DKKTKKLINELRKELEEVKKELDNKRNGELAIQPI-QDKRIIK-----------KDENSS 154
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
E ++FK E++E +E E S KK K +KLKK + K K
Sbjct: 155 VSEHEDFKQLENEENFLETEYNEITSSNNYKKLKIN-RKLKKAEKKLIKS 203
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 39.6 bits (93), Expect = 0.003
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 12/114 (10%)
Query: 87 IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE-- 144
K D K ++EKE+ + K++K K+K +E+ K+K++ +K EK K E
Sbjct: 545 WKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKEL-------EKLEKAKIPPAEFF 597
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEE-KDSEKEKKSK--DKDKKLKKEKLKKKKKE 195
K++E ++ ++ P EE E++K SK DK KL +E L K K
Sbjct: 598 KRQEDKYSAFDETGLPTHDADGEEISKKERKKLSKEYDKQAKLHEEYLAKGGKS 651
Score = 31.5 bits (72), Expect = 0.92
Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 9/90 (10%)
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
+++E + EKE+KE + + + K K ++ K++K+ EK +K+K + K + K
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLK--KQEEKKKKELEKLEKAKIPPAEFFKRQEDKYS 605
Query: 194 KEKERSSHEKEVIPKLTFKFGTDMEEKTKR 223
E +P G ++ +K ++
Sbjct: 606 AFDETG------LP-THDADGEEISKKERK 628
Score = 30.4 bits (69), Expect = 2.1
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLT 210
+K+ + +E EK KE KE+K K KK +++K K+ +K ++ E +
Sbjct: 545 WKLDDKEELQREKEEKEA---LKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQE 601
Query: 211 FKFGT 215
K+
Sbjct: 602 DKYSA 606
Score = 29.6 bits (67), Expect = 3.1
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 7/95 (7%)
Query: 72 VTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKN-----KE--KDKEKK 124
V +D E++++K K+ K K+ K K +++K KK+ +K++ E K +E K
Sbjct: 544 VWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQEDK 603
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 159
E G EE KKE K+ + DK+
Sbjct: 604 YSAFDETGLPTHDADGEEISKKERKKLSKEYDKQA 638
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 39.1 bits (91), Expect = 0.003
Identities = 25/111 (22%), Positives = 41/111 (36%), Gaps = 11/111 (9%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNK----EKDKEKKIDKEKEKGKKEEK 137
K K+ KK K H K ++ K+ K KN+ E E + + +K K
Sbjct: 3 KASKATKKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSK 62
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
+ E+E E I K +S+K ++ +K +KE
Sbjct: 63 LYSDVDSSSSEEEEDGSES-------ISKLNVNSKKISLNQVSTQKWRKEL 106
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 39.2 bits (92), Expect = 0.004
Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 14/134 (10%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEK 137
LGE + + + KKE +K+++K ++ + +I+ KE++ EK +K +K K +
Sbjct: 86 LGEENIEI---EAQIEELKKELKKLEEKIEQLEA-EIEKKEEELEKAKNKFLDKAWK-KL 140
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
KK + E + + K EK+ KE K S ++L K K K
Sbjct: 141 AKKYDSNLSEALKGLNYKKNFK--EKLLKELKSVILNASSLLSLEEL-------KAKIKT 191
Query: 198 RSSHEKEVIPKLTF 211
S K + LT
Sbjct: 192 LFSSNKPELALLTL 205
Score = 39.2 bits (92), Expect = 0.004
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 119 KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
+ E +I+ E +K K+ +EK E+ E + EK+ + E + ++ + +
Sbjct: 91 IEIEAQIE-ELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLS 149
Query: 179 DKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKR-ESSPKIVIKPVKSP 237
+ K L +K K+K KE S L+ + +++ K K SS K + +
Sbjct: 150 EALKGLNYKKNFKEKLLKELKSVILNASSLLSLE---ELKAKIKTLFSSNKPELALLTLS 206
Query: 238 SP 239
Sbjct: 207 VI 208
Score = 33.4 bits (77), Expect = 0.25
Identities = 22/91 (24%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKK---KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
I++ + K K K K+K+ + K+D D + ++K EK I+ +++ K+ E
Sbjct: 376 LIREHNEKIDNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLE 435
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
E K +++ +E E ++ + E ++I K
Sbjct: 436 AEIKALEKEIKELEKQLT-NIEPTADEINKL 465
Score = 30.0 bits (68), Expect = 2.9
Identities = 21/81 (25%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
++ +KI N +K+K K K E KE + +K+++ K EK ++++ E
Sbjct: 378 REHNEKIDNLKKEKNKAKKKLWLHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAE 437
Query: 168 EKDSEKEKKSKDKDKKLKKEK 188
K EK+ K+ +K+L +
Sbjct: 438 IK--ALEKEIKELEKQLTNIE 456
Score = 29.2 bits (66), Expect = 4.5
Identities = 29/147 (19%), Positives = 61/147 (41%), Gaps = 33/147 (22%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK------------------------ 124
+ + + K + E++K + ++ KN +K +EK
Sbjct: 312 EKENSEFKLDVEELKALLEALEEILEKNLQKLEEKLKDPSTSIELESITDLIESINDIID 371
Query: 125 -----IDKEKEKGKKEEKEKKEEKEK--KEEKEFKMKEDKEKPVEKIRKEEKD-SEKEKK 176
I + EK +KEK + K+K ++KED + ++ + EK + EK+
Sbjct: 372 AINELIREHNEKIDNLKKEKNKAKKKLWLHLVA-ELKEDIDAYQKEKKGLEKAINSLEKE 430
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSHEK 203
K + ++K + + K+ EK+ ++ E
Sbjct: 431 IKQLEAEIKALEKEIKELEKQLTNIEP 457
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 38.9 bits (91), Expect = 0.004
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
Query: 99 KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKE 158
+E + + K+ K+ EK E + +K + KEE +K + + + E+ E K
Sbjct: 5 REALAELA--KELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKP 62
Query: 159 KPVEKIRKEEKDSEKEKKSKDKDKK 183
+ E++ E+ K + +
Sbjct: 63 AASGEGGGGEEEEEEAKAEAAEFRA 87
Score = 38.5 bits (90), Expect = 0.005
Identities = 15/83 (18%), Positives = 38/83 (45%)
Query: 121 KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 180
+E + KE K E EK E E+++ + +KE+ +K +I + E+ ++ +
Sbjct: 5 REALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAA 64
Query: 181 DKKLKKEKLKKKKKEKERSSHEK 203
+ + ++++ + E +
Sbjct: 65 SGEGGGGEEEEEEAKAEAAEFRA 87
Score = 36.2 bits (84), Expect = 0.024
Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E++K +K + ++K + K++ K +I E+ ++ K G+ E+
Sbjct: 14 ELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEE 73
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
+EE+ K E EF+ +R + +E+K+
Sbjct: 74 EEEEAKAEAAEFR---------AYLRGGDDALAEERKA 102
Score = 34.6 bits (80), Expect = 0.083
Identities = 16/86 (18%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
K+ + + E K+ K ++EK + E+E + ++ ++K+ E D +E
Sbjct: 1 LKELREAL---AELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKL-DAEIDRLEELLD 56
Query: 178 KDKDKKLKKEKLKKKKKEKERSSHEK 203
+ + K + ++E+E + E
Sbjct: 57 ELEAKPAASGEGGGGEEEEEEAKAEA 82
Score = 28.5 bits (64), Expect = 7.2
Identities = 16/85 (18%), Positives = 30/85 (35%)
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
++ E +E K E E + ++EK KEE D + + ++ + E
Sbjct: 5 REALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAA 64
Query: 193 KKEKERSSHEKEVIPKLTFKFGTDM 217
E E+E +F +
Sbjct: 65 SGEGGGGEEEEEEAKAEAAEFRAYL 89
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 39.0 bits (91), Expect = 0.004
Identities = 36/120 (30%), Positives = 62/120 (51%), Gaps = 15/120 (12%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
E+ K + K++ + + K EK+++++ E EK KE+++ K+E E +M+E K
Sbjct: 500 EQAKTFYGEFKEEINVLIEKLSALEKELEQKNEH---LEKLLKEQEKLKKELEQEMEELK 556
Query: 158 EKPVEKIRKEEKDSEKEKKSKDKDKKLKKE------KLKKKKKEKERSSHEKEVIPKLTF 211
E R+ K E EK++++ K LKKE +LK+KK K + E + KL
Sbjct: 557 E------RERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKE 610
Score = 39.0 bits (91), Expect = 0.004
Identities = 32/127 (25%), Positives = 64/127 (50%), Gaps = 15/127 (11%)
Query: 84 DKSIKKDKKTHKKKEKEKI---------KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
I + KT + KE+I +K+ ++ + ++ K++EK + KE E+ +
Sbjct: 495 PHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEK-LKKELEQEME 553
Query: 135 EEKEKKEEKEKKEEKEF-----KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
E KE++ K+ + EKE +K++ E + ++++++ KE KS + KLK+ K
Sbjct: 554 ELKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQ 613
Query: 190 KKKKKEK 196
K +K
Sbjct: 614 KIPQKPT 620
Score = 35.2 bits (81), Expect = 0.067
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 13/113 (11%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKK---KKDKKDKDKIKNKEKDKEKKIDKEKEKG 132
E L ++K+ K + KE+EK+KK ++ ++ K++ +NK+ + EK+ + +
Sbjct: 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKAL 577
Query: 133 KKE-EKEKKEEKEKKEEKEF---------KMKEDKEKPVEKIRKEEKDSEKEK 175
KKE E +E KEKK K K+KE K+K +K + D +K
Sbjct: 578 KKEVESIIRELKEKKIHKAKEIKSIEDLVKLKETKQKIPQKPTNFQADKIGDK 630
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 39.3 bits (92), Expect = 0.004
Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 1/118 (0%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
+ + I+K +++ ++ K+ ++K++ + K K K+++K E+ ++ + +E
Sbjct: 307 DELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEE 366
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS-KDKDKKLKKEKLKKKKKEKER 198
K KKEE E K EK+ KE ++ EK K+ +++ K+ + KK+ KE
Sbjct: 367 AKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
Score = 38.9 bits (91), Expect = 0.005
Identities = 37/142 (26%), Positives = 77/142 (54%), Gaps = 10/142 (7%)
Query: 73 TSSEDLGEIKK--DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
+ ++LGE+ K + I++ +K K+ E + K+ +K+ +++ + + ++ + +E
Sbjct: 162 NAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELRE 221
Query: 131 KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK---- 186
+ +K EKE KE +E KEE E KE + K + EEK E E++ ++ K++++
Sbjct: 222 ELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEK 281
Query: 187 ----EKLKKKKKEKERSSHEKE 204
++LK+K +E + S E
Sbjct: 282 VKELKELKEKAEEYIKLSEFYE 303
Score = 38.1 bits (89), Expect = 0.010
Identities = 27/130 (20%), Positives = 71/130 (54%), Gaps = 2/130 (1%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E+K + + ++ KK +E++ K ++ + + + ++ K++++ ++K +EE E+
Sbjct: 606 ELKDAEKELEREEKELKKLEEELDKAF--EELAETEKRLEELRKELEELEKKYSEEEYEE 663
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
E+ + +E + + +EK R+E K + ++ K + ++++ K++L+K +K ER
Sbjct: 664 LREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERV 723
Query: 200 SHEKEVIPKL 209
+E + K
Sbjct: 724 EELREKVKKY 733
Score = 37.7 bits (88), Expect = 0.012
Identities = 25/134 (18%), Positives = 73/134 (54%), Gaps = 2/134 (1%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
+ + I + + +E K +K+ K+ +++K + ++ EK+++ + +K E++ +
Sbjct: 203 EEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIR 262
Query: 141 EEKEKKEEKEFKMK--EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
E +E+ EE + +++ E+K K +++++++ ++ K + ++ +E K+ + +E
Sbjct: 263 ELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEE 322
Query: 199 SSHEKEVIPKLTFK 212
+ +E I +L K
Sbjct: 323 INGIEERIKELEEK 336
Score = 37.4 bits (87), Expect = 0.015
Identities = 35/139 (25%), Positives = 75/139 (53%), Gaps = 7/139 (5%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
E L + ++ ++K + ++K +++ IK K + K K K ++ +KK+ + ++K +
Sbjct: 510 EKLKKYNLEE-LEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDEL 568
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK------EEKDSEKEKKSKDKDKKLKKEKL 189
E+E E ++ EE F+ E+ E+ ++++ E KD+EKE + ++K+ K +E+L
Sbjct: 569 EEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEEEL 628
Query: 190 KKKKKEKERSSHEKEVIPK 208
K +E + E + K
Sbjct: 629 DKAFEELAETEKRLEELRK 647
Score = 35.0 bits (81), Expect = 0.069
Identities = 38/129 (29%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
K E++ +I K + KK E++KK K K + E+ +++ +++
Sbjct: 400 KEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTA 459
Query: 131 KGKKEEKEKKE--EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
+ K+ EKE KE EKE+K KE + E K ++ K ++ +E+ K+ ++K KK E+
Sbjct: 460 ELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEE 519
Query: 189 LKKKKKEKE 197
L+KK +E E
Sbjct: 520 LEKKAEEYE 528
Score = 34.7 bits (80), Expect = 0.088
Identities = 28/115 (24%), Positives = 62/115 (53%), Gaps = 1/115 (0%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
+KE E+ +K+ K +++ K E+ E + E+ + + EE EKK +E+ EE + E
Sbjct: 611 EKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLE 670
Query: 156 DKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLT 210
+ + +R E ++ EK ++ K + KE+L++++K K+ ++ + ++
Sbjct: 671 -LSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVE 724
Score = 34.3 bits (79), Expect = 0.14
Identities = 29/126 (23%), Positives = 69/126 (54%), Gaps = 1/126 (0%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
EI++ + + + K+K +EKI++ +++ ++ K + +E +++ K KE ++ +E +
Sbjct: 238 EEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIK 297
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRK-EEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
E E+ ++ ++++ + E+I EE+ E E+K + ++ KK K +K+ E+
Sbjct: 298 LSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEEL 357
Query: 198 RSSHEK 203
HE
Sbjct: 358 EERHEL 363
Score = 33.9 bits (78), Expect = 0.19
Identities = 30/139 (21%), Positives = 74/139 (53%), Gaps = 4/139 (2%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
K I+K+ K ++KE+ K++K+ + +K K E K K++ ++ ++ +++ K+ E+
Sbjct: 462 KRIEKELKEIEEKER-KLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEEL 520
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+K+ +E++ ++K ++ K K ++ + K ++KL + ++E E
Sbjct: 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKE-- 578
Query: 205 VIPKLTFKFGTDMEEKTKR 223
+ +L F+ ++EE+ K
Sbjct: 579 -LEELGFESVEELEERLKE 596
Score = 33.9 bits (78), Expect = 0.19
Identities = 27/124 (21%), Positives = 68/124 (54%), Gaps = 1/124 (0%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
+K+ K +K+ + + K + + + ++ +K ++ +++ I++ ++ +++E+ +
Sbjct: 282 VKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLE 341
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
E K+K +E E +++E +E+ + K E E+ K + L EKL+K+ +E E++
Sbjct: 342 ELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKK-RLTGLTPEKLEKELEELEKAK 400
Query: 201 HEKE 204
E E
Sbjct: 401 EEIE 404
Score = 32.7 bits (75), Expect = 0.36
Identities = 33/137 (24%), Positives = 73/137 (53%), Gaps = 16/137 (11%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEK---DKEKKIDKEKEKGKKEEKEKKEEKEK 145
K++ +KE E ++ K +K ++KI+ E+ + +K+I++ +EK K+ ++ K++ +E
Sbjct: 237 KEEIEELEKELESLEGSK-RKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEY 295
Query: 146 KEEKEFKMK-EDKEKPVEK-----------IRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
+ EF + D+ + +EK I + K+ E++++ ++ KK KE K+ +
Sbjct: 296 IKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLE 355
Query: 194 KEKERSSHEKEVIPKLT 210
+ +ER +E K
Sbjct: 356 ELEERHELYEEAKAKKE 372
Score = 30.4 bits (69), Expect = 2.4
Identities = 27/124 (21%), Positives = 71/124 (57%), Gaps = 8/124 (6%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
E+L + ++ + + + +KE E+++KK +++ ++++ + + +++ +E
Sbjct: 626 EELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSREL-AGLRAELEE 684
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
++++EE +K E K+KE+ E+ K +K+ EK +K+ ++ ++L+++ K K
Sbjct: 685 LEKRREEIKKTLE---KLKEEL----EEREKAKKELEKLEKALERVEELREKVKKYKALL 737
Query: 196 KERS 199
KER+
Sbjct: 738 KERA 741
Score = 30.0 bits (68), Expect = 3.0
Identities = 27/115 (23%), Positives = 58/115 (50%), Gaps = 7/115 (6%)
Query: 111 KDKIKNKEK--DKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
K +I+ EK + + I++ ++ +KE +E E + + + + +EK+ KE
Sbjct: 175 KRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSEL----PELREELEKLEKEV 230
Query: 169 KDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKR 223
K+ E+ K+ ++ +K + K+K +E+ +E I +L + ++EEK K
Sbjct: 231 KELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEI-EELEEKVKE 284
Score = 29.3 bits (66), Expect = 4.2
Identities = 26/112 (23%), Positives = 58/112 (51%), Gaps = 5/112 (4%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
EK + KKK + + K+ E++ + + + +E G + +E +E ++ E + E K
Sbjct: 549 EKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELK 608
Query: 158 EKPVEKIRKEEKDSEKEKKSKDKDKKLKK-----EKLKKKKKEKERSSHEKE 204
+ E R+E++ + E++ ++L + E+L+K+ +E E+ E+E
Sbjct: 609 DAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEE 660
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 38.8 bits (91), Expect = 0.004
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+E K K EK K K+ EKK K+K+K K++ + K +R
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKR 425
Score = 38.4 bits (90), Expect = 0.006
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
K S KK K KK ++ +KK+ +K+K K+K + +D + + K G EE
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 38.0 bits (89), Expect = 0.008
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIK-NKEKDKEKKIDKEKEKGKKEE 136
+ E K + I + + K EK K KK K KEK+KEK K++ + K
Sbjct: 364 IEEPLKARVIDELRPKTKA-PSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNI 422
Query: 137 KEKKEEKEKKEE 148
++++ EE
Sbjct: 423 GKRRKPSGTSEE 434
Score = 36.5 bits (85), Expect = 0.026
Identities = 16/58 (27%), Positives = 23/58 (39%)
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
E + K + K K V R E+K+ EKEK K + K K++K
Sbjct: 374 DELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 33.0 bits (76), Expect = 0.27
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 157 KEKPVEKIR---KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
K + ++++R K + + K SK K ++K K+K+K K + H
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRD 418
Score = 31.5 bits (72), Expect = 0.85
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 119 KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK-EFKMKEDKEKPVEKIRKEEKDSEK 173
K K K + KK ++ E+KEK++EK + K + K + K RK SE+
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 31.1 bits (71), Expect = 1.3
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 113 KIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEK 163
K K +K + K EK +KE+++ K +K ++ K + E+
Sbjct: 384 SEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
Score = 30.7 bits (70), Expect = 1.5
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
K EKK K K+ K EK KE++ + +K+ +D K+ K +E
Sbjct: 381 KAPSEKKTGK--PSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 38.9 bits (91), Expect = 0.004
Identities = 20/100 (20%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
E K + ++ K KD KD +K +E++ KK E+ E+K ++ E+
Sbjct: 60 ELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEI 119
Query: 158 EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
E +R E+ + ++ + L K++++ +
Sbjct: 120 ---AEMMRDEKVPIRELEEIPPEFVALYKQEIQSPTRLNL 156
Score = 33.9 bits (78), Expect = 0.16
Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%)
Query: 94 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK--EEKEKKEEKEF 151
K + +E K K + K ++K +E+K K+ E+ E+K E K+ EE
Sbjct: 62 RKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEEIAE 121
Query: 152 KMKEDKEKP--VEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
M+++K +E+I E K++ L E L+
Sbjct: 122 MMRDEKVPIRELEEIPPEFVALYKQEIQSPTRLNLINELLRA 163
Score = 29.6 bits (67), Expect = 2.8
Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 10/155 (6%)
Query: 64 PMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD-KE 122
V +L + + ++ K + + KK++++K KI+ E
Sbjct: 47 TAVEVTKLAAVDSELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIE 106
Query: 123 KKIDKEKEKGKK------EEKEK--KEEKEKKEEKEFKMKEDKEKPVEK-IRKEEKDSEK 173
+K + K+ G++ +EK + E+ E +E + I + + +
Sbjct: 107 RKTQEVKDSGEEIAEMMRDEKVPIRELEEIPPEFVALYKQEIQSPTRLNLINELLRAGLE 166
Query: 174 EKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPK 208
+ KD+ + + +K K S + +I +
Sbjct: 167 LEILDMKDESYEDLRYFSEKLRKLLLSLIENLIVE 201
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 38.6 bits (90), Expect = 0.005
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 14/140 (10%)
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
+I++V S L I ++ ++K+ K I + + +N ++K +
Sbjct: 298 DIIQV--SRQLLNILREIKFAEEKRLVCKLGSASIATRFSSPNV--QENDVEEKNDNSNV 353
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEK----------IRKEEKDSEKEKKS 177
++++ KKEE + KEEK++ E E + KE E+ EK + + E+D +K K S
Sbjct: 354 QQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKEKGDLSIFVALSLSEVEEDGDKVKIS 413
Query: 178 KDKDKKLKKEKLKKKKKEKE 197
D K + E +K+K E E
Sbjct: 414 FDSSKAMHYELMKEKLPELE 433
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 38.9 bits (91), Expect = 0.005
Identities = 27/170 (15%), Positives = 59/170 (34%), Gaps = 22/170 (12%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
D EIK +S D + + K + + D I + K + +
Sbjct: 782 LNDAREIKDKESKAIDLDDIDFELEL---IGKQEINIDYILELLQTFNDKNGAYESLKEL 838
Query: 135 EEKEKKEE-----KEKKEEKEF--KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
E+ KE ++KK + + + + K ++ K E+ KK ++ + ++E
Sbjct: 839 IERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEE 898
Query: 188 KLKKKK------------KEKERSSHEKEVIPKLTFKFGTDMEEKTKRES 225
L +++ K E + E + K + ++ +E
Sbjct: 899 GLNEEELAFYDDLALNGGKLPENGTELVEKLAKEKSLREKNKDDWKAKEE 948
Score = 38.2 bits (89), Expect = 0.008
Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 19/180 (10%)
Query: 32 KTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDK 91
K ++ SK ++ + + +I EI D I +
Sbjct: 764 KARLEKDYQSKYLDLIDNLNDAREIKDKESKAIDLDDIDFELELIGKQEINIDY-ILELL 822
Query: 92 KTHKKKEK---------EKIKKKKDKKDKDKIK-------NKEKDKEKKIDKEKEKGKKE 135
+T K E+I K+ + + K K + + KK+D ++ +
Sbjct: 823 QTFNDKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYRAKKLDTAEKLEELY 882
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
KKEE+ K+ +E + E++ + + + +KL KEK ++K +
Sbjct: 883 ILAKKEEEFKQFAEEEGLNEEELA--FYDDLALNGGKLPENGTELVEKLAKEKSLREKNK 940
Score = 31.6 bits (72), Expect = 0.82
Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 9/148 (6%)
Query: 42 KEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEK 101
E +E + ++++ + + + ++ + K +
Sbjct: 453 VELELIEESIKEEAEELDE-RIEEITEDILEKIKKKTKNLEFLAMLAVRLIRAAKDIYDH 511
Query: 102 IKKKKDKKDKDKI-----KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
KK++ K + K + E +I + KE E K EF+ D
Sbjct: 512 FKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDW---HSKESLEGAIKDYNTEFETDFD 568
Query: 157 KEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
K++ K++ E+KD K K KD L
Sbjct: 569 KKQSHAKLKDEKKDLIKRFKLKDDPLDL 596
Score = 30.5 bits (69), Expect = 2.0
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 12/102 (11%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
+ + KK + + K K ++ ++ +EE +EE F
Sbjct: 863 AINQYRAKKLDTAEKLEELYILAK---------KEEEFKQFAEEEGLNEEELAFYDDLAL 913
Query: 158 EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
E EK +K+K + K + K K+E E
Sbjct: 914 NGGK---LPENGTELVEKLAKEKSLREKNKDDWKAKEEVEAK 952
Score = 29.3 bits (66), Expect = 4.2
Identities = 13/91 (14%), Positives = 33/91 (36%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
+ + K + +K + K +++ + +++ N+E+ E
Sbjct: 861 IEAINQYRAKKLDTAEKLEELYILAKKEEEFKQFAEEEGLNEEELAFYDDLALNGGKLPE 920
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK 166
+ EK KE+ + +D K E++
Sbjct: 921 NGTELVEKLAKEKSLREKNKDDWKAKEEVEA 951
Score = 28.9 bits (65), Expect = 5.9
Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 28/158 (17%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNK---------------EK 119
SED+G ++ + +D + + E+ K K +K E
Sbjct: 697 SEDIGYLEDAGELLRDFAPELEIKVERGNKILAKLFGRFLKAFNALKKLYEFAYTLEEEI 756
Query: 120 DKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKE-------KPVEKIRKEEKDSE 172
+ + K + + + K + +E K KE K +E I K+E + +
Sbjct: 757 QYLEDLLKARLEKDYQSKYLDLIDNLNDAREIKDKESKAIDLDDIDFELELIGKQEINID 816
Query: 173 ------KEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ K+ + KE +++ KE +K+
Sbjct: 817 YILELLQTFNDKNGAYESLKELIERIIKEWIEDLRQKK 854
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 36.9 bits (86), Expect = 0.005
Identities = 25/91 (27%), Positives = 55/91 (60%), Gaps = 13/91 (14%)
Query: 123 KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM----KEDKEKPVEKIRKEE-KDSEKEKKS 177
+ ID E+++ +KE +++++E+++++EKE+ KE++EK +E++ K + K +
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADD 69
Query: 178 KDKDKKLKKE--------KLKKKKKEKERSS 200
+D D++LK++ + +KKKEK
Sbjct: 70 EDYDEELKEQERWDDPMAQFLRKKKEKTDKK 100
Score = 30.0 bits (68), Expect = 1.0
Identities = 25/94 (26%), Positives = 53/94 (56%), Gaps = 8/94 (8%)
Query: 101 KIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKG---KKEEKEKKEEKEKKEEKEFKMKEDK 157
+I ++K+++ + + +EK+++++ +KE KG K+E +++ EE EK + K D
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADD 69
Query: 158 EKPVEKIRKEEKDSE-----KEKKSKDKDKKLKK 186
E E+++++E+ + KK + DKK K
Sbjct: 70 EDYDEELKEQERWDDPMAQFLRKKKEKTDKKGKP 103
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 38.8 bits (91), Expect = 0.005
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
+E+E ++ K++ K++ K ++K +KEE EK K+K E K K
Sbjct: 397 EEEEGENGNLSPAERKKLRKKQR-------KAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Query: 157 KEKP 160
+
Sbjct: 450 DGET 453
Score = 38.4 bits (90), Expect = 0.007
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 107 DKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK 166
DK + + +E + E++K +K K++K EK K EKE K +K E K
Sbjct: 389 DKPLLAEGEEEEGENGNLSPAERKKLRK--KQRKAEK--KAEKEEAEKAAAKKKAEAAAK 444
Query: 167 EEKDSEKEKKSKDKD 181
+ K + E K D D
Sbjct: 445 KAKGPDGETKKVDPD 459
Score = 35.7 bits (83), Expect = 0.047
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
+ E +E++ E +++K +K RK EK +EKE+ K KK + KK K
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGP 449
Query: 196 KE 197
Sbjct: 450 DG 451
Score = 34.1 bits (79), Expect = 0.12
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
KK KK+ K + K +K++ +K K K + KK + KK + + EK
Sbjct: 412 KKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPDPLGEK 464
Score = 34.1 bits (79), Expect = 0.13
Identities = 16/54 (29%), Positives = 26/54 (48%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKE 128
+ +L ++ K KK +K KK EKE+ +K KK + K K + + K
Sbjct: 403 NGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 31.4 bits (72), Expect = 0.89
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 116 NKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
+ + + ++E E G E+K+ ++K+ + E K ++++ EK ++K K
Sbjct: 388 HDKPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEA---EKAAAKKKAEAAAK 444
Query: 176 KSKDKDKKLKKE 187
K+K D + KK
Sbjct: 445 KAKGPDGETKKV 456
Score = 31.1 bits (71), Expect = 1.3
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 92 KTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
+KK ++K ++K +KK + + K K+K K+ + + KK + + EK
Sbjct: 408 PAERKKLRKK-QRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPDPLGEK 464
Score = 29.1 bits (66), Expect = 4.6
Identities = 12/49 (24%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
E++E + E+ ++K+ K + KK +KE+ +K +K+ + K
Sbjct: 397 EEEEGENGNLSPAERKKLRKKQRKAE-KKAEKEEAEKAAAKKKAEAAAK 444
Score = 28.7 bits (65), Expect = 6.2
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLT 210
E E+ + KK + KK +K + K +K+E E+++ +K+
Sbjct: 388 HDKPLLAEGEEEEGENGNLSPAERKKLR---KKQRKAEKKAEKEEAEKAAAKKKAEAAAK 444
Query: 211 FKFGTDMEEKTK 222
G D E K
Sbjct: 445 KAKGPDGETKKV 456
>gnl|CDD|220297 pfam09581, Spore_III_AF, Stage III sporulation protein AF
(Spore_III_AF). This family represents the stage III
sporulation protein AF (Spore_III_AF) of the bacterial
endospore formation program, which exists in some but
not all members of the Firmicutes (formerly called
low-GC Gram-positives). The C-terminal region of these
proteins is poorly conserved.
Length = 185
Score = 36.9 bits (86), Expect = 0.008
Identities = 23/116 (19%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
E I + + + K +I+ ++ + ++ + + E+K K+E K ++ E ++ ED
Sbjct: 55 SESSLIIENEIESKKKEIQASQRAYILEEYAKQLEKQVEKKLKEEYGVKVKDVEVEIDED 114
Query: 157 KEKP---VEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 209
E ++++ K+ KEK+ + + + K K+E+E S +++ L
Sbjct: 115 LESNNFDIKEVNVTLKEESKEKQKSKVEPVVIDTQTSKPKEEEEESEEAEKIKNFL 170
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 38.4 bits (89), Expect = 0.008
Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 10/132 (7%)
Query: 127 KEKEKGKKEEKEK-KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 185
K + K++ KEK +KE K E E E+ K R+E+ + K K K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETE-GERCTIKQREEKGIDAPAILNVKKKKPYK 850
Query: 186 KEKLKKKKKEKERS---SHEKEVIPKLTFKFGTDMEEKTKRESSPKIV-----IKPVKSP 237
+ + + ++ R + +P FK G + + + ++ +K V +P
Sbjct: 851 VDNMTRILPQQSRYISFIKDDRFVPVRKFKGGVVVLRDREPKEPVALIETVRQMKDVNAP 910
Query: 238 SPPPVAAADEYD 249
P P D D
Sbjct: 911 LPTPFKVDDNVD 922
Score = 36.9 bits (85), Expect = 0.022
Identities = 20/112 (17%), Positives = 40/112 (35%), Gaps = 5/112 (4%)
Query: 31 DKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKD 90
+ K E +E EY + + ++ KV ++ IK K+
Sbjct: 746 RGSQAIPKFCFNEDLEEEEFEYPR-----MYEEASGKSVRKVNTAVLSTTIKAAARAKQK 800
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
K +KE + + + + ++ +EK ID K++K K +
Sbjct: 801 PKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKVD 852
Score = 36.1 bits (83), Expect = 0.034
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 102 IKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKP 160
IK K K K K DKE KI+ + + E K+ +EK + + K+KP
Sbjct: 791 IKAAARAKQKPKEKG-PNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKP 848
Score = 33.0 bits (75), Expect = 0.30
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE--KEKK 146
K K+K KEK K+ K I++ + E + ++EEK K
Sbjct: 792 KAAARAKQKPKEKGPNDKEIK----IESPSVETEGERCT---IKQREEKGIDAPAILNVK 844
Query: 147 EEKEFKM 153
++K +K+
Sbjct: 845 KKKPYKV 851
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two proteins
encoded by the ATP11 and ATP12 genes. Atp11p is a
molecular chaperone of the mitochondrial matrix that
participates in the biogenesis pathway to form F1, the
catalytic unit of the ATP synthase.
Length = 250
Score = 37.3 bits (87), Expect = 0.008
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 9/113 (7%)
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
K + K+ K K+ + + +K K++ EKKE KK + K K ++ + +
Sbjct: 3 KYRSKLLQKAKESGLEFIERLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKPAD 62
Query: 169 KDSEKEKKSKDKDKKLKKEKLKKK-KKEKE---RSSHEKE-----VIPKLTFK 212
K +K K L EK+K +E E R+ H K+ VIP T++
Sbjct: 63 KKKPFDKPFKPLSSILDVEKIKDLSAEEIEFIWRAYHAKKDSLCAVIPAETYE 115
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 37.6 bits (87), Expect = 0.009
Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 4/136 (2%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK----IDKEK 129
ED E K K KK K KK + +K K+ D D+ + + D E + I
Sbjct: 232 GGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYDSDDGDDEGREEDYISDSS 291
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
G E+ + + + K +++ + E+ + EE+ +K K K K KK L
Sbjct: 292 ASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGL 351
Query: 190 KKKKKEKERSSHEKEV 205
K + S + ++
Sbjct: 352 DKDDSDSGDDSDDSDI 367
Score = 37.6 bits (87), Expect = 0.010
Identities = 42/146 (28%), Positives = 62/146 (42%), Gaps = 14/146 (9%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKK--KKDKKDKDKIKNKEKDKEKKIDKE 128
K+ E E D+S K + ++K K+K KK K KK D K K + + +
Sbjct: 214 KIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGKRGGDDDADEYD 273
Query: 129 KEKGKKEEKE------------KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
+ G E +E EE+E K E K + E+ + EE+ +E+E
Sbjct: 274 SDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGG 333
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSHE 202
K KKLKK K KK +K+ S
Sbjct: 334 LSKKGKKLKKLKGKKNGLDKDDSDSG 359
Score = 29.2 bits (65), Expect = 4.3
Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 1/144 (0%)
Query: 64 PMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEK 123
P +P ++ ED E +++K+ ++ + K K+ +K+K KK+ DKD + + +
Sbjct: 306 PEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDS 365
Query: 124 KIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
ID E K++KE K+++ P + E KD K K + + K
Sbjct: 366 DIDGEDSVSLVTAKKQKEPKKEEPVDSNPSSPGNSGP-ARPSPESKDKGKRKAANEVSKS 424
Query: 184 LKKEKLKKKKKEKERSSHEKEVIP 207
KK K E S + P
Sbjct: 425 PASVPAKKLKTENAPKSSSGKSTP 448
Score = 28.4 bits (63), Expect = 8.0
Identities = 20/79 (25%), Positives = 37/79 (46%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
+E E K + KIK+ E D E D+ + G+ ++EK ++K+KK K K +D
Sbjct: 198 EETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKKLDD 257
Query: 157 KEKPVEKIRKEEKDSEKEK 175
+K + + + +
Sbjct: 258 DKKGKRGGDDDADEYDSDD 276
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 36.0 bits (84), Expect = 0.010
Identities = 19/92 (20%), Positives = 57/92 (61%), Gaps = 4/92 (4%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE---KDKEKKIDKEKEKGKKEEKE 138
K+ + K ++ +K +++++K K+K KD E + KEK++ K+ ++ ++++++
Sbjct: 21 KQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQK 80
Query: 139 KKEEKEKKEEKEFKMKEDK-EKPVEKIRKEEK 169
+++ +K++++E + DK K ++++ K++
Sbjct: 81 LQQDLQKRQQEELQKILDKINKAIKEVAKKKG 112
Score = 32.2 bits (74), Expect = 0.21
Identities = 16/76 (21%), Positives = 48/76 (63%), Gaps = 3/76 (3%)
Query: 96 KKEKEKIKKKKDKKDKD--KIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF-K 152
K +++++K+ K+ + K++ + + ++K+ K+ + +EKKE++ +K+ +EF +
Sbjct: 17 KAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQR 76
Query: 153 MKEDKEKPVEKIRKEE 168
++ ++ ++K ++EE
Sbjct: 77 KQQKLQQDLQKRQQEE 92
Score = 27.5 bits (62), Expect = 8.0
Identities = 18/80 (22%), Positives = 44/80 (55%), Gaps = 5/80 (6%)
Query: 119 KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE----KDSEKE 174
K +K+++KE +K ++ E EK E++ +K +++ + + +KE+ K E +
Sbjct: 17 KAAQKQLEKEFKK-RQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQ 75
Query: 175 KKSKDKDKKLKKEKLKKKKK 194
+K + + L+K + ++ +K
Sbjct: 76 RKQQKLQQDLQKRQQEELQK 95
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 36.8 bits (85), Expect = 0.011
Identities = 28/150 (18%), Positives = 65/150 (43%), Gaps = 4/150 (2%)
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED----KEKPVEKI 164
K+K + +E + E+E K K++ +E+ +E+ + E K++
Sbjct: 68 KEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPG 127
Query: 165 RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRE 224
++ + D +K ++D D + + + K +E E S H +E + + + + + E
Sbjct: 128 KEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENE 187
Query: 225 SSPKIVIKPVKSPSPPPVAAADEYDTGDSK 254
S + V K ++ + ++YD D+
Sbjct: 188 DSKEPVEKAERTKAETDDVTEEDYDEEDNP 217
Score = 31.4 bits (71), Expect = 0.65
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 10/171 (5%)
Query: 36 KEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHK 95
KEK +S+ P+E E ++ +L V + + + ++K K+++
Sbjct: 68 KEKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPG 127
Query: 96 KKEKEKIKKKKDKKDKD---------KIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
K+ + K +D D K+ + +D + E+ K++ KEK E+E +
Sbjct: 128 KEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKEKASEQENE 187
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+ KE K ++ K E+D ++E + K +K+E K+ +E++
Sbjct: 188 DSKEPVEKAERTKAETD-DVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQQ 237
Score = 29.9 bits (67), Expect = 1.8
Identities = 29/140 (20%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
K K+ +++ KE+++ +K K + KE ++D++K ++ +++E E +
Sbjct: 96 KTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKV 155
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK--KEKLKKKKKEKERSSHEKEVI 206
E ED E ++ K KEK S+ +++ K EK ++ K E + + E
Sbjct: 156 HE--ETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDE 213
Query: 207 PKLTFKFGTDMEEKTKRESS 226
+ ++E+ +E
Sbjct: 214 EDNPVEDSKAIKEELAKEPV 233
Score = 29.9 bits (67), Expect = 2.2
Identities = 26/165 (15%), Positives = 68/165 (41%), Gaps = 5/165 (3%)
Query: 64 PMVPNIVKVTSSEDLGEIKKDKSIKKDK---KTHKKKEKEKIKKKKDKKDKDKIKNKEKD 120
P VP +E+ G++ K+ +K + K + EKI K ++D + + +
Sbjct: 75 PTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDE 134
Query: 121 KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 180
+ + ++ + ++ + K +E E + ++E + ++ KE+ ++ + SK+
Sbjct: 135 DKFLLAEDSDDRQETLEAGKVHEE--TEDSYHVEETASEQYKQDMKEKASEQENEDSKEP 192
Query: 181 DKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRES 225
+K ++ K + +E E + +E + +
Sbjct: 193 VEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQQ 237
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 37.6 bits (88), Expect = 0.011
Identities = 24/106 (22%), Positives = 51/106 (48%), Gaps = 16/106 (15%)
Query: 104 KKKDKKDKDKIKNKE---KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF-------KM 153
K K+ K I D+ +++ K+ E+ E+K++KE E K E E +
Sbjct: 485 KGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYSLEKSL 544
Query: 154 KEDKEKP----VEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
KE+ +K +K+ + + ++E + +DK++ + K ++ +K
Sbjct: 545 KEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEI--EAKTEELQKV 588
Score = 33.4 bits (77), Expect = 0.25
Identities = 31/117 (26%), Positives = 57/117 (48%), Gaps = 23/117 (19%)
Query: 89 KDKKTHKKKEKEKI-------KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE------ 135
KDK T K++K I + ++ KD + +DK++K E+ + K E
Sbjct: 483 KDKGT-GKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRK---ERIEAKNEAEEYVY 538
Query: 136 --EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
EK KEE +K E + K+ E+ +E +++E + +KE+ + K ++L+K
Sbjct: 539 SLEKSLKEEGDKLPEAD---KKKVEEAIEWLKEELEGEDKEEI-EAKTEELQKVVQP 591
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 37.3 bits (87), Expect = 0.013
Identities = 21/83 (25%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
K + + + ++ N+E+ + KK EK + K++ E+ E+ +E KE +
Sbjct: 293 SGLKNSGEPSLKEIHEARL-NEEERELKKKFTEKIREKEKRLEELEQNLIEERKE--LNS 349
Query: 156 DKEKPVEKIRKEEKDSEKEKKSK 178
E+ +K+ EK EK K +K
Sbjct: 350 KLEEIQKKLEDLEKRLEKLKSNK 372
Score = 36.1 bits (84), Expect = 0.030
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 115 KNKEKDKEKKIDKEKEKG-KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK 173
KN + K+I + + ++E K+K EK +++EK + E + +E+ ++ E
Sbjct: 296 KNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELE--QNLIEERKELNSKLE- 352
Query: 174 EKKSKDKDKKLKKEKLKKKKK 194
E + K +D + + EKLK K
Sbjct: 353 EIQKKLEDLEKRLEKLKSNKS 373
Score = 34.6 bits (80), Expect = 0.085
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
E + +K+ K G+ KE E + +EE+E K K ++ ++ R EE + ++
Sbjct: 285 ENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEER 344
Query: 178 KDKDKKLKKEKLKKKKKEKERSSHEK 203
K+ + KL +E KK + ++R K
Sbjct: 345 KELNSKL-EEIQKKLEDLEKRLEKLK 369
Score = 33.8 bits (78), Expect = 0.15
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 8/95 (8%)
Query: 100 EKIKKKKDKKDKDKIKNKEKDK-EKKIDKEKEKGKKEEKEK-KEEKEKKEEKEFKMKEDK 157
E + +K K+ + K+ E ++++E+ + KK+ EK +E++++ EE E + E
Sbjct: 285 ENYRTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIE-- 342
Query: 158 EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
E+ K E +KK +D +K+L+K K K
Sbjct: 343 ----ERKELNSKLEEIQKKLEDLEKRLEKLKSNKS 373
Score = 32.3 bits (74), Expect = 0.46
Identities = 18/70 (25%), Positives = 38/70 (54%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ + + ++++ KKK EKI++K+ + ++ + E+ KE E+ + K E+ EK
Sbjct: 304 KEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEK 363
Query: 140 KEEKEKKEEK 149
+ EK K +
Sbjct: 364 RLEKLKSNKS 373
Score = 28.4 bits (64), Expect = 7.4
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 119 KDKEKKIDKEKEKGKKEEKEK-KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
K+ + + E + +K K E KE E ++ E++ K + EK EKEK+
Sbjct: 276 KETTENLLYENYRTEKLSGLKNSGEPSLKEIHEARLNEEER--ELKKKFTEKIREKEKRL 333
Query: 178 KDKDKKLKKEKLKKKKKEKERSS 200
++ ++ L +E+ + K +E
Sbjct: 334 EELEQNLIEERKELNSKLEEIQK 356
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 37.1 bits (86), Expect = 0.013
Identities = 29/192 (15%), Positives = 81/192 (42%), Gaps = 5/192 (2%)
Query: 8 PQPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEK---EYSKVKDVELGVTP 64
P + P S K + + K+ T+ K + + K + ++ + S +
Sbjct: 167 PPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKT 226
Query: 65 MVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK 124
K S + E +++S K + + E +D+ + + + E+ ++
Sbjct: 227 KEKKEKKEASESTVKEESEEES-GKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEE 285
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
+EKEK +K ++ KK +++ E++E ++ + E+ + E +K+ + ++ +
Sbjct: 286 ETEEKEK-EKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTV 344
Query: 185 KKEKLKKKKKEK 196
+ +++ + +
Sbjct: 345 SPDGGRRRGRRR 356
Score = 35.6 bits (82), Expect = 0.039
Identities = 35/135 (25%), Positives = 54/135 (40%)
Query: 70 VKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEK 129
+K T++ K KSI + K +K + K+ +K + K K K + K
Sbjct: 154 LKPTANGKRPSSKPPKSIMSPEVKVKSAKKTQDTSKETTTEKTEGKTSVKAASLKRNPPK 213
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
+ KK+ KEKKE+KE KE+ E+ K + E E + + E
Sbjct: 214 KSNIMSSFFKKKTKEKKEKKEASESTVKEESEEESGKRDVILEDESAEPTGLDEDEDEDE 273
Query: 190 KKKKKEKERSSHEKE 204
K E+ S E E
Sbjct: 274 PKPSGERSDSEEETE 288
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 37.3 bits (87), Expect = 0.013
Identities = 32/171 (18%), Positives = 61/171 (35%), Gaps = 30/171 (17%)
Query: 41 SKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKE 100
+ + S E + GV ++VT D I + KD T K+
Sbjct: 424 AADNKSLGRFELDGIPPAPRGV-----PQIEVTFDIDANGILNVTA--KDLGTGKE---- 472
Query: 101 KIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK-EK 159
IK +++I++ + E +K+ +E E + + +
Sbjct: 473 ---------QSITIKASSGLSDEEIER---MVEDAEANAALDKKFRELVEARNEAESLIY 520
Query: 160 PVEKIRKEEKDSEKEKKSKDKDKK------LKKEKLKKKKKEKERSSHEKE 204
+EK KE +E+K K ++ L+ EK + K K +E ++
Sbjct: 521 SLEKALKEIVKVSEEEKEKIEEAITDLEEALEGEKEEIKAKIEELQEVTQK 571
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 37.3 bits (87), Expect = 0.014
Identities = 44/198 (22%), Positives = 83/198 (41%), Gaps = 13/198 (6%)
Query: 13 HPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKV 72
P P + V+ K E K E +V + E T +
Sbjct: 54 DPTLRDPQISVVSSVTKLSKGPKDEPKQVKIPRQSGLSE--EVAEAEAKATSVAAEATTP 111
Query: 73 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKK-KDKKDKDKIKNKEKDKEKKIDKEKEK 131
S ++L E ++ + K+T +++ D D K N + D E I KE+
Sbjct: 112 KSIQELVEALEELLEELLKETASDPVVQELVSIFNDLIDSIKEDNLKDDLESLIASAKEE 171
Query: 132 ----GKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
KK + K EE+E+ E +KE +E+ + K+ +E + K++ + K+L+ E
Sbjct: 172 LDQLSKKLAELKAEEEEELERA---LKEKREELLSKLEEELLARLESKEAALE-KQLRLE 227
Query: 188 KLKKKKKEKERSSHEKEV 205
+++KE+ R +E+++
Sbjct: 228 F--EREKEELRKKYEEKL 243
Score = 35.4 bits (82), Expect = 0.049
Identities = 33/206 (16%), Positives = 75/206 (36%), Gaps = 34/206 (16%)
Query: 14 PPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVT 73
T ++ S ++ E++ +E K + V +V +
Sbjct: 99 AKATSVAAEATTPKSIQELVEALEELL---------EELLKETASDPVVQELVSIFNDLI 149
Query: 74 SSEDLGEIKKD----------------KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNK 117
S +K D K + + K +++ + +K+K+++ +
Sbjct: 150 DSIKEDNLKDDLESLIASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEEL 209
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK--MKEDKEKPVEKIRKEEKDSEKEK 175
E K +++ + E + +KEE KK E++ + ++ E +K++ E E
Sbjct: 210 LARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIEL 269
Query: 176 KSKDKDKKLKKEKLKKKKKEKERSSH 201
+ + K K+K E+ER+
Sbjct: 270 QR-------EFNKEIKEKVEEERNGR 288
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 36.9 bits (86), Expect = 0.015
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 120 DKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD 179
KEK I+ E+ K + E E++ +EK++E+E M+ + E +++ + E E+
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAER---- 256
Query: 180 KDKKLKKE---KLKKKKKEKERSSHE 202
+KL E L+ K +E+E E
Sbjct: 257 --EKLLAEQERMLEHKLQEQEELLKE 280
Score = 30.3 bits (69), Expect = 1.5
Identities = 24/95 (25%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 93 THKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
T K+K E + K + + ++ +EK KE++ E ++ + ++ K+ EK E + K
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQE-RSYQEHVKQLIEKMEAEREK 258
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
+ ++E+ +E +E+++ KE K + + L+KE
Sbjct: 259 LLAEQERMLEHKLQEQEELLKE-GFKTEAESLQKE 292
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 37.0 bits (86), Expect = 0.015
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDK---IKNKEKDKEKKIDKEKEKGKKEEKE 138
+ ++ K +K K++ K K KK KKD D + + ++ + ++ KK++K+
Sbjct: 4 ENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKK 63
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
KK++K+ E + PV +D+
Sbjct: 64 KKKKKKNLGEAY---DLAYDLPVVWSSAAFQDNS 94
Score = 35.8 bits (83), Expect = 0.033
Identities = 15/92 (16%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
E + E K++K++ K K K+K + + + D + ++++ + ++ KK
Sbjct: 1 AMNENGENEVKQQKQQN--KQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKK 58
Query: 193 KKEKERSSHEKEVIPKLTFKFGTDMEEKTKRE 224
KK+K++ +K + + + +
Sbjct: 59 KKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAF 90
Score = 33.9 bits (78), Expect = 0.13
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
Query: 116 NKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
++ E ++ ++K++ K++ +KK +K KK+ + + + + ++ E +K
Sbjct: 1 AMNENGENEVKQQKQQNKQKGTKKKNKKSKKDVDDD--DAFLAELISENQEAENKQNNKK 58
Query: 176 KSKDKDKKLKKEKLKKKKKEK 196
K K K KK KK +
Sbjct: 59 KKKKKKKKKKKNLGEAYDLAY 79
Score = 32.8 bits (75), Expect = 0.36
Identities = 31/162 (19%), Positives = 64/162 (39%), Gaps = 28/162 (17%)
Query: 31 DKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKD 90
+ ++K +K+K + K+ + SK V + I +++ +
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSK-------------KDVDDDDAFLAELISENQEAENK 53
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE--- 147
+ KKK+K+K KKKK+ + + + ++ E++ K+
Sbjct: 54 QNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLGNWPEQEWKQTQPP 113
Query: 148 ----EKEFKMKEDKEKPVEKIRKEEKD-----SEKEKKSKDK 180
K+FK D E PV +I++ + S +EK+ +K
Sbjct: 114 TIPVSKQFK---DGEYPVGEIQEYPGENSSRTSSEEKRELEK 152
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 37.1 bits (86), Expect = 0.016
Identities = 26/126 (20%), Positives = 61/126 (48%), Gaps = 2/126 (1%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
I + K K K+ + ++ + K + ++ N EKDKE ++ +++ +E +K+
Sbjct: 74 INQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQ 133
Query: 141 EEKE-KKEEKEFKMKEDKEK-PVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ + EK+ + +++E+ E +K E+ E E++ ++ L+ K+ E++R
Sbjct: 134 LQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQR 193
Query: 199 SSHEKE 204
S
Sbjct: 194 ESKWAI 199
Score = 36.3 bits (84), Expect = 0.027
Identities = 30/145 (20%), Positives = 68/145 (46%), Gaps = 1/145 (0%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E + ++ + + KK+ + ++ ++K + K E+ K+ ++ + E K E E
Sbjct: 48 EKEANEKRAQYRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALEL 107
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
++ KE + + KE E E ++ + +E +K ++ +K ++ K + +KK +E
Sbjct: 108 LNLEKDKELELLE-KELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESL 166
Query: 200 SHEKEVIPKLTFKFGTDMEEKTKRE 224
E+E + + D+E K E
Sbjct: 167 ELEREKFEEQLHEANLDLEFKENEE 191
Score = 35.2 bits (81), Expect = 0.057
Identities = 27/126 (21%), Positives = 56/126 (44%), Gaps = 5/126 (3%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKK-----DKDKIKNKEKDKEKKIDKEKEKGKK 134
E K + + K + E + +KDK+ + +KE K+ + E + K+
Sbjct: 86 EQIKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKR 145
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
E + +E + + EK+ + + E+ + + E + + E K ++ ++ K LKK K+
Sbjct: 146 ENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKR 205
Query: 195 EKERSS 200
E S
Sbjct: 206 RAELGS 211
Score = 30.2 bits (68), Expect = 1.9
Identities = 16/97 (16%), Positives = 48/97 (49%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
K+ + K+ + + E I+KK++ ++ E +K+ + E E+ K EE+ +
Sbjct: 121 KELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEA 180
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
+ + ++ + +E K ++K+++ + ++ + +
Sbjct: 181 NLDLEFKENEEQRESKWAILKKLKRRAELGSQQVQGE 217
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 37.2 bits (87), Expect = 0.017
Identities = 31/195 (15%), Positives = 74/195 (37%), Gaps = 49/195 (25%)
Query: 40 SSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKE- 98
K +EK+ VK +E ++K E+L +I +K IK+ + E
Sbjct: 66 LPKLNPLREEKKKVSVKSLE--------ELIKD-VEEELEKI--EKEIKE--LEEEISEL 112
Query: 99 KEKIKKKKDKKDK-DKIKN------KEKDKEK------KIDKEKEKGKKEEKEKKEEKEK 145
+ +IK+ + + ++ + N + + ++K + K E + + +
Sbjct: 113 ENEIKELEQEIERLEPWGNFDLDLSLLLGFKYVSVFVGTVPEDKLEELKLESDVENVEYI 172
Query: 146 KEEKEFK------MKEDKEK---------------PVEKIRKEE-KDSEKEKKSKDKDKK 183
+K + +KE ++ E E ++ ++E + +K+++
Sbjct: 173 STDKGYVYVVVVVLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERE 232
Query: 184 LKKEKLKKKKKEKER 198
E+LK+ K+
Sbjct: 233 SLLEELKELAKKYLE 247
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 36.5 bits (84), Expect = 0.017
Identities = 32/115 (27%), Positives = 49/115 (42%), Gaps = 2/115 (1%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK--EKEKGKKEEKEKKEEKEKKEE 148
KK K+K ++K K +KE K KK K + KK K KK + K
Sbjct: 1 MAETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTT 60
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
K+ +K +K + V+K +K +KE S + + K K K+ + EK
Sbjct: 61 KKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKKLFASEK 115
Score = 35.3 bits (81), Expect = 0.048
Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 1/105 (0%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
K KK +++K KK K+ K K K K K+ K KK + K K+
Sbjct: 6 KTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTV 65
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
+ E KE V K +++ E KL KK
Sbjct: 66 KFEKTESVKKE-SVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKK 109
Score = 31.5 bits (71), Expect = 0.77
Identities = 22/97 (22%), Positives = 36/97 (37%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
K ++E+ K + K+ KK K K K K K K KK+ + E
Sbjct: 9 KKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFE 68
Query: 131 KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
K + +KE +K K+E + + K +
Sbjct: 69 KTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSK 105
Score = 29.9 bits (67), Expect = 2.2
Identities = 24/87 (27%), Positives = 36/87 (41%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
K+ K K T K K+ K KK K K K EK +KE K+ +K+
Sbjct: 29 TAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAV 88
Query: 143 KEKKEEKEFKMKEDKEKPVEKIRKEEK 169
+ E K+ ++ K +K+ EK
Sbjct: 89 SAEVFEASNKLFKNTSKLPKKLFASEK 115
Score = 29.5 bits (66), Expect = 3.2
Identities = 29/97 (29%), Positives = 43/97 (44%), Gaps = 2/97 (2%)
Query: 119 KDKEKKIDKEKE-KGKKEEKEKKEEKEKKEEKEFKMKE-DKEKPVEKIRKEEKDSEKEKK 176
K +KK +EK+ KK K+ K KK K K K V+K + + ++K
Sbjct: 6 KTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTV 65
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKF 213
+K + +KKE + KK +KE S E FK
Sbjct: 66 KFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKN 102
Score = 28.8 bits (64), Expect = 4.6
Identities = 22/113 (19%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 17 TPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSE 76
K ++ P K + K ++K K + K K + ++ T
Sbjct: 6 KTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAK--KAAKVKKTKSVKTTTKKV 63
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEK 129
+ + +K +S+KK+ K +KE + + + KN K +K EK
Sbjct: 64 TV-KFEKTESVKKESVAKKTVKKEAVSAEVFEASNKLFKNTSKLPKKLFASEK 115
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 35.9 bits (83), Expect = 0.019
Identities = 18/75 (24%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query: 114 IKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK 173
K + K + ++++ K + ++E K ++E E +E + +E E E + ++ +
Sbjct: 2 EKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKD 61
Query: 174 E-KKSKDKDKKLKKE 187
E K K+++KKL+ E
Sbjct: 62 ENNKLKEENKKLENE 76
Score = 33.2 bits (76), Expect = 0.14
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
+K K+ + EE KE + K+E+K ++++ E+I KEE + E+ ++ K
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKG----KEEDLEFEEIEKEEIIEDSEESNEVKI 56
Query: 182 KKLKKEKLKKKKKEK 196
++LK E K K++ K
Sbjct: 57 EELKDENNKLKEENK 71
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 36.0 bits (83), Expect = 0.019
Identities = 27/122 (22%), Positives = 62/122 (50%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
E+ K + I++ ++ KKK K+ K + + D+++ + K +
Sbjct: 81 ENNKGKLKLRLIEESRELTKKKGKKVKKSILEIVEIDELQEFIDELLKSDKEILPLLLYL 140
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
+E+ EE + K +++ + E+ EK +E++ E+ EK + K+K K+L++ K + ++
Sbjct: 141 GQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELL 200
Query: 196 KE 197
+E
Sbjct: 201 EE 202
Score = 34.5 bits (79), Expect = 0.055
Identities = 28/141 (19%), Positives = 66/141 (46%), Gaps = 9/141 (6%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
S+ G +K D I+KD+ K + + K K I+ + +KK K K+
Sbjct: 52 KSKGRGIVKGDIEIEKDEGKKKTYVEITFENNKGKLKLRLIEESRELTKKKGKKVKKSIL 111
Query: 134 KEEKEKKEEKEKKEEKE---------FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
+ + + ++ E + + +++ + ++ RKE+K+ +E + + ++ +
Sbjct: 112 EIVEIDELQEFIDELLKSDKEILPLLLYLGQERLEELKFKRKEKKERLEELEKELEELED 171
Query: 185 KKEKLKKKKKEKERSSHEKEV 205
+K+ L+K +EKE+ +E+
Sbjct: 172 EKDLLEKLLEEKEKKKELEEL 192
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 37.0 bits (86), Expect = 0.019
Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 9/113 (7%)
Query: 87 IKKDKKTHKKKEKEKIKKKKDKKD-KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE- 144
I D + H+ +++ + + D K ++ N + E I + + EE K +
Sbjct: 835 IIADHQGHQAIIEQRTQDSGIRNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSE 894
Query: 145 -KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+ K + ++ + EEK +++ D ++L K + + K K
Sbjct: 895 LQNHHKTEALSQNNKY------NEEKSAQERMPGADSPEELMKRAKEYQDKHK 941
Score = 33.2 bits (76), Expect = 0.30
Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 3/100 (3%)
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
+ + +D I+ D K H+ + ++ I+ +E + + + + K E
Sbjct: 845 IIEQRTQDSGIRNDVK-HQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEA 903
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
+ K +E+ + + P E++ K K+ + + K
Sbjct: 904 LSQ-NNKYNEEKSAQERMPGADSP-EELMKRAKEYQDKHK 941
Score = 33.2 bits (76), Expect = 0.32
Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 11/70 (15%)
Query: 79 GEIKKDKSIKKD-----KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
I+ +++ K + HK + + K ++K + D +++ K +
Sbjct: 879 NSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGA-DSPEELMK-----R 932
Query: 134 KEEKEKKEEK 143
+E + K +
Sbjct: 933 AKEYQDKHKG 942
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 36.6 bits (85), Expect = 0.021
Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 111 KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
K K N K+++ G K KE E+K ED + KE+
Sbjct: 212 KSKEININKEEKNNGSNVNNNGNKNNKE-----EQKGNDLSNELEDISLGPLEYDKEK-- 264
Query: 171 SEKEKKSKDKDKKLKK------EKLKKKKKEKERSSHEKEVIPKLTFKFGT 215
EK K K+K KKL + K K + + + + I + + GT
Sbjct: 265 LEKIKDLKEKAKKLGISIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGT 315
Score = 35.8 bits (83), Expect = 0.044
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEK-EKGKKEEKEK-KEE 142
KS + + +K + +K +K++ K + E + + KE+ EK K+
Sbjct: 212 KSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDL 271
Query: 143 KEKKEEKEFKMKE-----DKEKPVEKIRKEEKD 170
KEK ++ + + KI+ E+ D
Sbjct: 272 KEKAKKLGISIILFDDMTKNKTTNYKIQNEDPD 304
Score = 33.9 bits (78), Expect = 0.14
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEK--KIDKEKEKGKKEEK 137
E K + S + KE++K ++ + + E DKEK KI KEK KK
Sbjct: 221 EEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKKLGI 280
Query: 138 EKKE--EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
+ K + +K++ + + I S K K
Sbjct: 281 SIILFDDMTKNKTTNYKIQNEDPDFITSIVYTSGTSGKPK 320
Score = 31.6 bits (72), Expect = 0.88
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 8/77 (10%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKN-KEKDKEKKIDKEKEKGKKEEKEKKEE 142
D IK + K+EK + +K+ + K D +++ + +KEK E
Sbjct: 208 DTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLE- 266
Query: 143 KEKKEEKEFKMKEDKEK 159
K +KE +K
Sbjct: 267 ------KIKDLKEKAKK 277
Score = 30.1 bits (68), Expect = 2.7
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 10/77 (12%)
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
I ++ KEEK + K ++ +K S + + +
Sbjct: 211 IKSKEININKEEKNNGSNV----------NNNGNKNNKEEQKGNDLSNELEDISLGPLEY 260
Query: 185 KKEKLKKKKKEKERSSH 201
KEKL+K K KE++
Sbjct: 261 DKEKLEKIKDLKEKAKK 277
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 36.7 bits (85), Expect = 0.023
Identities = 22/62 (35%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
EK+ EKE +E++E+ EK KEE++ +K+ + +++ K+EK KK KK KE ++ +
Sbjct: 28 EKEVEKEVPDEEEEEEKEEK--KEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Query: 204 EV 205
+
Sbjct: 86 LL 87
Score = 34.0 bits (78), Expect = 0.14
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
++KE EK +E+E++E++EKKEE+E DKE+ V++ +EEK+ +K+K K K+
Sbjct: 27 VEKEVEKEVPDEEEEEEKEEKKEEEE--KTTDKEEEVDE--EEEKEEKKKKTKKVKETTT 82
Query: 185 KKEKLKKKK 193
+ E L K K
Sbjct: 83 EWELLNKTK 91
Score = 32.8 bits (75), Expect = 0.34
Identities = 21/67 (31%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
K+ EKE ++++++ ++K K +E+ K ++ E+ +KEEK+KK +K K+ E+++
Sbjct: 29 KEVEKEVPDEEEEEEKEEK-KEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELL 87
Query: 155 EDKEKPV 161
+K KP+
Sbjct: 88 -NKTKPI 93
Score = 32.8 bits (75), Expect = 0.36
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
K+ EKE +E+E++E++E K +E+K E EE D E+EK+ K KK K +K+K+
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKE----EEVDEEEEKEEK---KK-KTKKVKET 80
Query: 193 KKEKE 197
E E
Sbjct: 81 TTEWE 85
Score = 32.0 bits (73), Expect = 0.66
Identities = 21/63 (33%), Positives = 37/63 (58%)
Query: 113 KIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
K KE E++ ++++EK ++EEK +E+E EE+E + K+ K K V++ E +
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLN 88
Query: 173 KEK 175
K K
Sbjct: 89 KTK 91
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 35.4 bits (82), Expect = 0.025
Identities = 26/82 (31%), Positives = 60/82 (73%), Gaps = 5/82 (6%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
K++ K+++K+ ++ + + + +E+++ KK+++++E +KEE+E +EE+EKK+E+E
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEE----- 59
Query: 156 DKEKPVEKIRKEEKDSEKEKKS 177
++++ E+ RKE+++ EK K S
Sbjct: 60 ERKEREEQARKEQEEYEKLKSS 81
Score = 35.4 bits (82), Expect = 0.025
Identities = 22/76 (28%), Positives = 52/76 (68%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
K + K +EK+ +++ + ++EE+E++++ E+K E E K +E+ E+ EK ++EE+ E+E
Sbjct: 6 KKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKERE 65
Query: 175 KKSKDKDKKLKKEKLK 190
++++ + ++ +K K
Sbjct: 66 EQARKEQEEYEKLKSS 81
Score = 31.6 bits (72), Expect = 0.42
Identities = 26/92 (28%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
K++ K EEK+ + ++ + EE+E + ++ E+ E RKEE++ E+E+ +K K+ ++
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEER---EKKKEEEER 61
Query: 188 KLKKKKKEKERSSHEKEVIPKLTFKFGTDMEE 219
K ++++ KE+ +EK + + GTD
Sbjct: 62 KEREEQARKEQEEYEKLKSSFVVEEEGTDKLS 93
Score = 30.1 bits (68), Expect = 1.3
Identities = 16/76 (21%), Positives = 50/76 (65%)
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
K+ G K+ + +E++ +++++E + +E +E+ + ++E + E+E+ ++++KK ++E+
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 189 LKKKKKEKERSSHEKE 204
K+++++ + E E
Sbjct: 61 RKEREEQARKEQEEYE 76
Score = 28.9 bits (65), Expect = 3.2
Identities = 23/77 (29%), Positives = 53/77 (68%), Gaps = 4/77 (5%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
KK K +EK + ++ + EE E++EE++ K ++++ E+ +EE + E+EKK ++++
Sbjct: 5 AKKRAKLEEKQARRQQREAEE-EEREERK---KLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 182 KKLKKEKLKKKKKEKER 198
+K ++E+ +K+++E E+
Sbjct: 61 RKEREEQARKEQEEYEK 77
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 36.1 bits (84), Expect = 0.025
Identities = 17/61 (27%), Positives = 39/61 (63%)
Query: 104 KKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEK 163
K+K K +K++ K +++E++ E E+ ++EE E++++++ + K+ E KEK +E
Sbjct: 6 KEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIED 65
Query: 164 I 164
+
Sbjct: 66 L 66
Score = 28.8 bits (65), Expect = 5.8
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 112 DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDS 171
DK+K K K ++K +EK ++EE+E+ E E++EE+E + ++ ++ K +
Sbjct: 3 DKLKEKLS---KFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIK 59
Query: 172 EKE 174
EK+
Sbjct: 60 EKD 62
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 36.5 bits (85), Expect = 0.025
Identities = 35/152 (23%), Positives = 59/152 (38%), Gaps = 20/152 (13%)
Query: 49 EKEYSKVKDV---------ELGVTPMVP-NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKE 98
EKE+ +K++ E+ ++P P +V V S E ++ ++ K +E
Sbjct: 721 EKEFELLKEIISAIRNLRAEMNLSPSAPLKVVLVGSEELEDRLEANEDDIK--GLANLEE 778
Query: 99 KEKIKKKKDK-----KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM 153
E + ++ ID E + EKE EK +KE +
Sbjct: 779 LEILSPDPEEPPVEVTAVVGGAELFLPLAGLIDLAAEL-ARLEKEL--EKLEKEIDRIEK 835
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 185
K E V K +E + EKEK ++ + K K
Sbjct: 836 KLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAK 867
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 36.6 bits (85), Expect = 0.026
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 10/83 (12%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
++K KK D K+ GK+ + KK E + F+ ++ + +KD+ K KK
Sbjct: 738 AREKAKKGDAGKKGGKRRQVGKKVNFEP--DSAFRGEKKAKPK-----AAKKDARKAKKP 790
Query: 178 KDKDKKLK---KEKLKKKKKEKE 197
K +K+ K K KKK E
Sbjct: 791 SAKTQKIAAATKAKRAAKKKVAE 813
Score = 30.9 bits (70), Expect = 1.6
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 16/86 (18%)
Query: 122 EKKID--------KEKEKGKKE-EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
E+KID + GK EK KK + KK K + + +K+ E +
Sbjct: 717 ERKIDFSLISSERAPRNVGKTAREKAKKGDAGKKGGK-------RRQVGKKVNFEPDSAF 769
Query: 173 KEKKSKDKDKKLKKEKLKKKKKEKER 198
+ +K K + KK K +
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQ 795
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 35.1 bits (81), Expect = 0.026
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 209
E+ E+ ++E E + +SK+K K+ + +K+K K K PKL
Sbjct: 99 EETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPKL 153
Score = 34.3 bits (79), Expect = 0.049
Identities = 18/64 (28%), Positives = 32/64 (50%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
+E ++E E+ +E E+++ E K E + K K + KP + K + + +K K
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Query: 177 SKDK 180
SK K
Sbjct: 149 SKPK 152
Score = 33.2 bits (76), Expect = 0.10
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 124 KIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
KI +E EE+E +EE + E+E + E +K R+ K +++K K + KK
Sbjct: 86 KIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKK 145
Query: 184 LKKEKLK 190
K K K
Sbjct: 146 PKPSKPK 152
Score = 33.2 bits (76), Expect = 0.11
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 121 KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 180
+E ++E+ +EE + E+E E + + KE K++ V K K EK+ K + K K
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKP-KTEKEKPKTEPKKPK 147
Query: 181 DKKLK 185
K K
Sbjct: 148 PSKPK 152
Score = 30.1 bits (68), Expect = 1.2
Identities = 15/45 (33%), Positives = 25/45 (55%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 159
+ +++D + + KEK K+E + K EKEK + + K K K K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 28.2 bits (63), Expect = 5.6
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 163 KIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTK 222
KI +E S+ E++ +++ + E+ + + E +K +PK
Sbjct: 86 KIFRELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPK-----------PKT 134
Query: 223 RESSPKIVIKPVKSPSP 239
+ PK K K P
Sbjct: 135 EKEKPKTEPKKPKPSKP 151
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 36.3 bits (84), Expect = 0.027
Identities = 28/122 (22%), Positives = 60/122 (49%), Gaps = 7/122 (5%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK-----KEE 142
K+ K K++ EK +++K++ D DKI + E KI K + ++E+ K E
Sbjct: 365 KEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKVE 424
Query: 143 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK--DKKLKKEKLKKKKKEKERSS 200
K +++ + ++K K+ +E K ++++K + + +K L+ K K K++
Sbjct: 425 KSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLELFKGSKIITYKKKKG 484
Query: 201 HE 202
+
Sbjct: 485 KD 486
Score = 34.0 bits (78), Expect = 0.15
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNK-EKDKEKKIDKEKEKGKK---- 134
E+ DK I + K K +K + K+++ KI K EK +E +D E + KK
Sbjct: 385 ELDIDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPF 444
Query: 135 --EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
E+ KKE++++KE EF K + KI +K K+
Sbjct: 445 IEFEEVKKEKEKEKERPEFVEKVLELFKGSKIITYKKKKGKD 486
Score = 31.7 bits (72), Expect = 0.67
Identities = 26/121 (21%), Positives = 56/121 (46%), Gaps = 2/121 (1%)
Query: 105 KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKI 164
K+ K + K + ++K++EK+ + +K + + + + K ++KE++ K K+
Sbjct: 365 KEGSKQETKEQPEKKEEEKEEL-DIDKIILQIIKNEGKIISAILKNAEIKEEEGKITIKV 423
Query: 165 RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRE 224
K E+D+ + K K + ++ KKEKE+ E + K+ F K++
Sbjct: 424 EKSEEDTLDLEIKSIK-KYFPFIEFEEVKKEKEKEKERPEFVEKVLELFKGSKIITYKKK 482
Query: 225 S 225
Sbjct: 483 K 483
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 35.4 bits (82), Expect = 0.031
Identities = 29/114 (25%), Positives = 48/114 (42%), Gaps = 3/114 (2%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
EKE ++++ KK K K+ KK K+ K K +KK E+
Sbjct: 74 GEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTL 133
Query: 157 KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLT 210
+ P RK + S + K ++ ++E +KK + K R EK+ +LT
Sbjct: 134 LDSP---RRKSSRSSTVQNKEATHERLKEREIRRKKIQAKARKRKEKKKEKELT 184
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 34.6 bits (80), Expect = 0.032
Identities = 15/55 (27%), Positives = 38/55 (69%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
+K KK+K+++++++++ +E D+E++ID+ EK + K +K + ++++KE
Sbjct: 91 RKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKE 145
Score = 29.9 bits (68), Expect = 1.1
Identities = 18/62 (29%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
K G ++++++EE+E+ E +E +E ++ +EK + K EK ++++ K K++ KE+
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKR-EKRRENERKQKEILKEQ 150
Query: 189 LK 190
+K
Sbjct: 151 MK 152
Score = 28.4 bits (64), Expect = 3.8
Identities = 15/58 (25%), Positives = 36/58 (62%)
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
+K++E+E++EE E + +++E+ E + KE ++EK+ +++ K+ + K + K
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 36.3 bits (84), Expect = 0.033
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 81 IKKDKSIKK--DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
+KK S K + K++ K+ K+KKD DK K + D++ + K + E
Sbjct: 183 VKKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLE 242
Query: 139 KKEEKEKKEEKEFKMKEDKEKPV 161
K E + KE + +K+D +K V
Sbjct: 243 SKLEAQSKE--LWSLKDDLKKHV 263
Score = 30.9 bits (70), Expect = 1.7
Identities = 19/86 (22%), Positives = 42/86 (48%), Gaps = 10/86 (11%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
KK + K ++ ++ K+ + K+ K+++ ++K KK + + + +
Sbjct: 184 KKSPSEAKEEKAEERKQ--ESKKGAKRKKDASGDDKSKKAKTDRDVST------STAASQ 235
Query: 168 EKDSEKEKKSKDKDKKL--KKEKLKK 191
+K S+ E K + + K+L K+ LKK
Sbjct: 236 KKSSDLESKLEAQSKELWSLKDDLKK 261
Score = 29.0 bits (65), Expect = 6.4
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
+ K + K+E+ E+++++ KK K K +K +K + + S S+ K L
Sbjct: 183 VKKSPSEAKEEKAEERKQESKKGAKRKKDASGDDKS-KKAKTDRDVSTSTAASQKKSSDL 241
Query: 185 KKEKLKKKKKE 195
+ KL+ + KE
Sbjct: 242 ES-KLEAQSKE 251
>gnl|CDD|221957 pfam13175, AAA_15, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 320
Score = 35.5 bits (82), Expect = 0.040
Identities = 22/112 (19%), Positives = 38/112 (33%), Gaps = 9/112 (8%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK--- 127
K+ +++ KK K +K K + N EK+ + K+
Sbjct: 130 KIEKFDEIKGAKKKDFFKSINIYEIDNFIDKTLSKILDDNIVFQDNLEKNIDDKLSNIFN 189
Query: 128 ------EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK 173
+ EK EK K E + +F+ K D +I K D++
Sbjct: 190 EKLSNLKNEKISINEKIKSILNEINPDSKFEKKLDLNLIKLEIVKSNSDNDS 241
Score = 32.4 bits (74), Expect = 0.44
Identities = 26/105 (24%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK--KEEKEKKEEKEFK 152
K+K+K I +K D DK +K K+ KI E E K K E
Sbjct: 46 KEKKKIYISISDNKADIDKENLNKKSKKIKISIIIELSSNEIKSFSIKFYLNYYLEIINN 105
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
ED+ + + + E +K +K ++K K K K
Sbjct: 106 DVEDEIELLLFSKNLEYILKKILDKIEKFDEIKGAKKKDFFKSIN 150
Score = 30.1 bits (68), Expect = 2.2
Identities = 21/122 (17%), Positives = 41/122 (33%), Gaps = 8/122 (6%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK----IDKEKEKGKKEEKEK 139
+ +KK +K ++ K KKKD I + +K +D EK
Sbjct: 121 EYILKKILDKIEKFDEIKGAKKKDFFKSINIYEIDNFIDKTLSKILDDNIVFQDNLEKNI 180
Query: 140 KEEKEKKEEKEFKMKED---KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
++ ++ ++ K E + + K K D L K ++ K +
Sbjct: 181 DDKLSNIFNEKLSNLKNEKISINEKIKSILNEINPDS-KFEKKLDLNLIKLEIVKSNSDN 239
Query: 197 ER 198
+
Sbjct: 240 DS 241
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 34.7 bits (80), Expect = 0.041
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
++ E E +KE K E++ + EE+E K K+ K++ K K+EK +KEK
Sbjct: 121 PDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEV--KKEKKEKKDKKEKMV 178
Query: 178 KDKDKKLKKEKLKKK 192
+ K K KK+K KKK
Sbjct: 179 EPKGSKKKKKKKKKK 193
Score = 33.9 bits (78), Expect = 0.087
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
+K + + E+E+ K+KK KK+ K K ++KDK++K+ + K KK++K+KK
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Score = 31.6 bits (72), Expect = 0.49
Identities = 21/68 (30%), Positives = 42/68 (61%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
E+ + + + T K +++ ++++++ K+ K K + K++ KEKK KEK K K+
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKK 185
Query: 139 KKEEKEKK 146
KK++K+KK
Sbjct: 186 KKKKKKKK 193
Score = 30.8 bits (70), Expect = 0.87
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
+ D + + +K K +++ + ++++K K+K K KE KEKK K+K++
Sbjct: 119 GAPDGPPSELGSESETSEKETTAKVEKEAEVEEEEK-KEKKKKKEVKKEKKEKKDKKEKM 177
Query: 134 KEEKEKKEEKEKKEEK 149
E K K++K+KK++K
Sbjct: 178 VEPKGSKKKKKKKKKK 193
Score = 29.7 bits (67), Expect = 1.9
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
+ EK+ K++KE E ++E+KEKK++KE K+EK+ K + ++ K K++K +K+
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKK 192
Query: 175 K 175
K
Sbjct: 193 K 193
Score = 29.3 bits (66), Expect = 3.0
Identities = 20/73 (27%), Positives = 43/73 (58%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ + +T +K+ K++K+ + ++++K + K+K + KK KEK+ K++ E
Sbjct: 121 PDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEP 180
Query: 140 KEEKEKKEEKEFK 152
K K+KK++K+ K
Sbjct: 181 KGSKKKKKKKKKK 193
Score = 28.9 bits (65), Expect = 3.4
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
+ + + +K+ KE + E++ KEK+K KKE K++K+EK+ K+EK + K K
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKK-KKEVKKEKKEKKDKKEKMVEPKGSK 184
Query: 158 EKPVEKIRK 166
+K +K +K
Sbjct: 185 KKKKKKKKK 193
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 35.8 bits (83), Expect = 0.046
Identities = 20/132 (15%), Positives = 62/132 (46%), Gaps = 3/132 (2%)
Query: 73 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKG 132
E L E++ + S +++ +KE + + + ++ K +E+ + E+ +
Sbjct: 264 ELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEA 323
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
+ EE E K ++ +E E+K + +++ + + +E +++ ++ + + E+L+++
Sbjct: 324 QLEELESKLDELA---EELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQ 380
Query: 193 KKEKERSSHEKE 204
+ + E
Sbjct: 381 LETLRSKVAQLE 392
Score = 34.3 bits (79), Expect = 0.14
Identities = 25/137 (18%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID----KEKEK 131
++L + + S + +K ++ ++++ ++ + + + K E + +EK +
Sbjct: 288 KELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLE 347
Query: 132 GKKEEKEKKEEKEKKEEKEFKM----KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
KEE E E + ++ E E + E+ E+ +E +R + E + S + + + +
Sbjct: 348 ELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
Query: 188 KLKKKKKEKERSSHEKE 204
+L++ + +ER E E
Sbjct: 408 RLERLEDRRERLQQEIE 424
Score = 28.9 bits (65), Expect = 6.0
Identities = 23/130 (17%), Positives = 67/130 (51%), Gaps = 15/130 (11%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEK-IKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
L E+++ +K ++ +K E+ K +K + + + + + ++ +++++ +EE
Sbjct: 195 LNELER--QLKSLERQAEKAERYKELKAELRELELALLVLRLEELREELEE-----LQEE 247
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK--KEKLKKKKK 194
++ EE+ ++ E + E+K +E++R E SE E++ ++ K+L ++ + ++
Sbjct: 248 LKEAEEELEELTAELQELEEK---LEELRLE--VSELEEEIEELQKELYALANEISRLEQ 302
Query: 195 EKERSSHEKE 204
+K+
Sbjct: 303 QKQILRERLA 312
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 35.8 bits (83), Expect = 0.050
Identities = 19/116 (16%), Positives = 44/116 (37%), Gaps = 9/116 (7%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE----KKEEKEKK----EEK 149
E+ K + ++K+ +++ K ++ K++++E E+ +K E K E K
Sbjct: 493 EEAKTEFGEEKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELK 552
Query: 150 EFKMKEDKEKPVEKIRKEEKDSEKE-KKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ + + ++ E K K K L + K+K+ +
Sbjct: 553 AQIVVLAHMGLPVPAEEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKNKVLPEA 608
>gnl|CDD|222406 pfam13831, PHD_2, PHD-finger. PHD folds into an interleaved type
of Zn-finger chelating 2 Zn ions in a similar manner to
that of the RING and FYVE domains. Several PHD fingers
have been identified as binding modules of methylated
histone H3.
Length = 33
Score = 31.5 bits (72), Expect = 0.050
Identities = 11/33 (33%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 271 PMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 303
P++ C C H C G V E W C +C
Sbjct: 2 PLLVCSKCSVAVHASCYG-VPELSDGPWLCRRC 33
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 35.5 bits (82), Expect = 0.051
Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKK---------DKKDKDKIKNKEKDKEKKIDKEKE 130
E K++K + K + +D ++ +E +KE K +K+++
Sbjct: 155 EQVAKKTVKTAPISLAANGKPVPAVEVPHAGASYNPSFEDHQELLQEEYEKEVKAEKKRQ 214
Query: 131 KGKKEEKEKKEEKEKKEEKEFKMKE--DKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
+ ++ E++K E+ + + +M E +E + + + +S E + + K +
Sbjct: 215 ELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVR 274
Query: 189 LKKKKKEKER 198
K+K K +
Sbjct: 275 PKRKTKAQRN 284
Score = 33.9 bits (78), Expect = 0.15
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
K K + KE++ K+ E+E KEEK+ K K + +++I KE EK + K + +K +
Sbjct: 278 KTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERG 337
Query: 187 EKLKKKKK 194
EK K K++
Sbjct: 338 EKKKLKRR 345
Score = 33.1 bits (76), Expect = 0.26
Identities = 34/120 (28%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
SE L E D ++ + E + +K + K K K + ++K KE E+
Sbjct: 237 MSEGLLEESDDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREA 296
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
KEEK+ K KK + ++KE ++ V + K ++++K + + KKLK+ KL K K
Sbjct: 297 KEEKQLK----KKLAQLARLKEIAKE-VAQKEKARARKKEQRKERGEKKKLKRRKLGKHK 351
Score = 32.8 bits (75), Expect = 0.29
Identities = 21/105 (20%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 96 KKEKEKIKK-KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
+KE + KK ++ ++ ++K K + ++D+ E +E + EE+ E +
Sbjct: 204 EKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGFE 263
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
+ E + +R + K + K K + + ++ K +K+ K+K
Sbjct: 264 SEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQ 308
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 34.8 bits (80), Expect = 0.051
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
D K +K EKE + K D + K K KEK+ ++ +K K++ ++K+EEK + +E
Sbjct: 136 DVKNAEKFEKECRALSRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDED 195
Query: 150 EFKMKEDK--EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
+ K+E EK +K D +++L+ +
Sbjct: 196 KRPGGGGGSSGGQSGLSTKDEPPKEKRQKHHDPERRLEPQSH 237
Score = 34.1 bits (78), Expect = 0.090
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
K + + K+ K+KEK + E+ +K +E +K+++E + ++ ++P S
Sbjct: 153 KKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQS--G 210
Query: 175 KKSKDKDKKLKKEKLKKKKKEKERSSHE 202
+KD+ K K++K ++ E SHE
Sbjct: 211 LSTKDEPPKEKRQKHHDPERRLEPQSHE 238
Score = 28.7 bits (64), Expect = 4.4
Identities = 17/89 (19%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKI------DKEKEKGKKEEKEKKEEK 143
+K + +++ K+K+K+ + + ++D+ KK D++K G +
Sbjct: 151 SRKKSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSG 210
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
+++ K K K E+ R E + E
Sbjct: 211 LSTKDEPPKEKRQKHHDPER-RLEPQSHE 238
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 35.7 bits (82), Expect = 0.055
Identities = 43/194 (22%), Positives = 74/194 (38%), Gaps = 30/194 (15%)
Query: 20 PSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLG 79
P K D V+ K + KEK + +S T + + S L
Sbjct: 101 PIKNNDNVTTPIKANKKEKHNLDSSSSSSISSSLTNISFFSSPTSIYSCL-----SNSLS 155
Query: 80 EIKKDKSIKKDKKTH-----------KKKEKEKIKK-------------KKDKKDKDKIK 115
K IK+++ TH K+ +++KK ++ ++ IK
Sbjct: 156 SKHSPKVIKENQSTHVNISSDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIK 215
Query: 116 NKEKDKEKKIDKEKEKGKKEEKEK-KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
N DK K+ +KEK+K K++++ K+ K E+ + + + + KE K EK
Sbjct: 216 NNTNDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKVQNSHFDVRILRSYTKENKKDEKN 275
Query: 175 KKSKDKDKKLKKEK 188
S + L K K
Sbjct: 276 VVSGIRSSVLLKRK 289
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 34.7 bits (80), Expect = 0.056
Identities = 23/112 (20%), Positives = 61/112 (54%), Gaps = 2/112 (1%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
KK +K ++K+K++ +K++++ + + KEK +E K ++ K+ + K+E +
Sbjct: 102 KKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESA 161
Query: 148 EKEFKM--KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
K ++ E+ +K ++ E +K + + K+ ++ + ++KK+++E
Sbjct: 162 SSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEE 213
Score = 31.2 bits (71), Expect = 0.80
Identities = 20/83 (24%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
S+ K + +E+ KK+ + + K+K +++ +E++ K+++K ++EE+E
Sbjct: 157 AAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKK-QQEEEE 215
Query: 139 KKEEKEKKEEKEFKMKEDKEKPV 161
+K++ E+ +K K + + KPV
Sbjct: 216 RKQKAEEAWQKWMKNVKQRPKPV 238
Score = 29.7 bits (67), Expect = 2.4
Identities = 22/115 (19%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
K+ + + ++ K+K +E ++K + K + +K+ + K E+ +
Sbjct: 118 KEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESASSSLSGSAKPERNVSQ 177
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
E+ KK +E+++K K++++++ ++E++ + + KK ++E+ +K+K E+
Sbjct: 178 EEAKKRLQEWELK--------KLKQQQQ--KREEERRKQRKKQQEEEERKQKAEE 222
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 34.3 bits (79), Expect = 0.058
Identities = 20/88 (22%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 119 KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
+ K+ D E E K++++ +K +KE K ++ + K + + K E + +KEK
Sbjct: 41 QAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKLVN 100
Query: 179 DKDKK-LKKEKLKKKKKEKERSSHEKEV 205
+KK + EK +++ +E +++
Sbjct: 101 AFNKKQQEYEKDLNRREAEEEQKLLEKI 128
>gnl|CDD|116547 pfam07937, DUF1686, Protein of unknown function (DUF1686). The
members of this family are all hypothetical proteins of
unknown function expressed by the eukaryotic parasite
Encephalitozoon cuniculi GB-M1. The region in question
is approximately 250 amino acids long.
Length = 182
Score = 34.4 bits (79), Expect = 0.058
Identities = 18/73 (24%), Positives = 21/73 (28%), Gaps = 21/73 (28%)
Query: 261 ACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWF---CPKCSKVDEGSRKEKKKR 317
AC L M G G VCVGLV F S V
Sbjct: 108 AC-AAGSVKLFMPGSYG---RSSLVCVGLVV-------FAALLLLVSYVKGA-------G 149
Query: 318 GRKKKTHQDIIMS 330
G K + ++ S
Sbjct: 150 GEKVSSKGIVVGS 162
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 33.8 bits (78), Expect = 0.059
Identities = 10/68 (14%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK-EKPVEKIRK 166
K + +++ + K + ++ K++++ +KEE++ +++ E+ K K+ + ++ +++++
Sbjct: 34 KAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQ 93
Query: 167 EEKDSEKE 174
+++ +++E
Sbjct: 94 KQQAAQQE 101
Score = 32.2 bits (74), Expect = 0.26
Identities = 14/77 (18%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKD---KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF- 151
K +++++K+ KK + +++ KEK+ +E+K+ K+ +E ++ K+++ +++++E
Sbjct: 34 KAAQKQLEKEF-KKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQ 92
Query: 152 KMKEDKEKPVEKIRKEE 168
+ ++ ++ +++ ++E
Sbjct: 93 QKQQAAQQELQQKQQEL 109
Score = 28.4 bits (64), Expect = 4.9
Identities = 16/69 (23%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 119 KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
K +K+++KE +K + E +KKE++ +KEE++ + + + K+++ +K+++ +
Sbjct: 34 KAAQKQLEKEFKK-LQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQ 92
Query: 179 DKDKKLKKE 187
K + ++E
Sbjct: 93 QKQQAAQQE 101
Score = 27.6 bits (62), Expect = 8.1
Identities = 15/74 (20%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
+KE++K++K+ ++ K K+++ ++K + ++K + ++E ++K+++ + K
Sbjct: 59 QKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQE-LQQKQQELLQPIYDKI 117
Query: 156 DKEKPVEKIRKEEK 169
DK ++++ KE+
Sbjct: 118 DKA--IKEVAKEKG 129
>gnl|CDD|217023 pfam02414, Borrelia_orfA, Borrelia ORF-A. This protein is encoded
by an open reading frame in plasmid borne DNA repeats of
Borrelia species. This protein is known as ORF-A. The
function of this putative protein is unknown.
Length = 285
Score = 34.7 bits (80), Expect = 0.064
Identities = 37/143 (25%), Positives = 59/143 (41%), Gaps = 23/143 (16%)
Query: 87 IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK------------------IDKE 128
+ KK + + K+KK ++ K ++ K K K +
Sbjct: 85 LNYQKKECYEIINKYFKEKKIERFKKRVNAYFKKKSNKNGSVEKNECINNKNNVINKKIK 144
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKM-----KEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
+E KK K ++ K KK K+ K+ K K ++ I+ EE K KK K+K K
Sbjct: 145 EESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLIKNKKLKNKQKT 204
Query: 184 LKKEKLKKKKKEKERSSHEKEVI 206
LK K KE E+ ++K+ I
Sbjct: 205 LKNILYNLKDKELEKKGYKKKQI 227
Score = 30.0 bits (68), Expect = 2.1
Identities = 44/148 (29%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 67 PNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID 126
I K E + K+ K KK KK + KK K KI E++ K
Sbjct: 137 NVINKKIKEESKKKNSKNIEKLKIKKYFKKCNFKTNLKKDIKIKLLKIIKIEENFLIKNK 196
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDS----EKEKKSKDKDK 182
K K K K + K+K+ EK+ K+ EK +KI ++ K+ ++ K KD +K
Sbjct: 197 KLKNKQKTLKNILYNLKDKELEKKGYKKKQIEKFFQKIYEKYKNKPHFIIEKNKYKDLNK 256
Query: 183 ---KLKKEKLKKKKKEKERSSHEKEVIP 207
K KK KKKK K+ + K I
Sbjct: 257 IIGKFKKSFKKKKKNSKKNYENIKINIF 284
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 35.1 bits (80), Expect = 0.072
Identities = 27/140 (19%), Positives = 61/140 (43%), Gaps = 20/140 (14%)
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE------ 130
+ S+ ++T + E++ + + +D + + ++ D ++++ +KE
Sbjct: 452 SVDSYDPRASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQ 511
Query: 131 ------------KGKKEEKEKKEEKEKKEEKEFK--MKEDKEKPVEKIRKEEKDSEKEKK 176
K + +K++ E++EEK+ K M +K+K + K K ++E+
Sbjct: 512 GIKYSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQA 571
Query: 177 SKDKDKKLKKEKLKKKKKEK 196
K KK + K KK +K
Sbjct: 572 ENLKKKKKQIAKQKKLDSKK 591
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 35.2 bits (81), Expect = 0.072
Identities = 34/156 (21%), Positives = 59/156 (37%), Gaps = 6/156 (3%)
Query: 100 EKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE-KKEEKEKKEEKEFKMKEDKE 158
EK K DK+D + +EK + E KK ++ K+ KK K+ E E
Sbjct: 1162 EKELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESETTE 1221
Query: 159 KPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE-KEVIPKLTFK----F 213
+ E ++ + K K + KK K+KE+E + K+ +
Sbjct: 1222 ETYGSSAMETENVAEVVKPKGRAGAKKKAPAAAKEKEEEDEILDLKDRLAAYNLDSAPAQ 1281
Query: 214 GTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYD 249
MEE K + + + S ++ +D+ D
Sbjct: 1282 SAKMEETVKAVPARRAAARKKPLASVSVISDSDDDD 1317
Score = 30.2 bits (68), Expect = 2.4
Identities = 36/229 (15%), Positives = 81/229 (35%), Gaps = 25/229 (10%)
Query: 31 DKTSPKEKMSSKEKTSPKEKEYSKVKDVE-LGVTPMVPNIVKVTSSEDLGEIKKDKSIKK 89
D+ ++ +KT+PK +KD++ L + + E ++++ + +
Sbjct: 1134 DRDKLNIEVEDLKKTTPKSLW---LKDLDALEKELDKLDKEDAKAEEAREKLQRAAARGE 1190
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNK-----------EKDKEKKIDKEKEKGKKEEKE 138
K + K K K +++ E + ++ K K + ++K
Sbjct: 1191 SGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKA 1250
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
KEK+EE E +D+ + ++ E+ K + + K
Sbjct: 1251 PAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVI 1310
Query: 199 S---SHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAA 244
S + + +++ + E+ K++ K K + PP AA
Sbjct: 1311 SDSDDDDDDFAVEVS------LAERLKKKGGRKPAAANKK-AAKPPAAA 1352
Score = 28.7 bits (64), Expect = 8.0
Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 6/107 (5%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKE------KKEEKEFKMKEDKEKPVEKIRKEEKDS 171
EK +E D++K + E+ +K K EKE + ++ E+ R++ + +
Sbjct: 1126 EKVQELCADRDKLNIEVEDLKKTTPKSLWLKDLDALEKELDKLDKEDAKAEEAREKLQRA 1185
Query: 172 EKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDME 218
+S K ++ K K+ + + E E + + E
Sbjct: 1186 AARGESGAAKKVSRQAPKKPAPKKTTKKASESETTEETYGSSAMETE 1232
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 35.2 bits (82), Expect = 0.074
Identities = 20/80 (25%), Positives = 39/80 (48%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
++ + E E+ +E E++EE E + E EK +EK + K +K +K+
Sbjct: 178 AEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKA 237
Query: 178 KDKDKKLKKEKLKKKKKEKE 197
++K + + + KK K +E
Sbjct: 238 QEKKVEGRLAQHKKYAKLRE 257
Score = 28.6 bits (65), Expect = 7.0
Identities = 17/100 (17%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 111 KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKI-RKEEK 169
D+++N E+ + ID + +E+ + ++ + + +E++++ + + E +
Sbjct: 156 YDRLENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESE 215
Query: 170 DSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 209
EK + K K+ K ++K+ E + + KL
Sbjct: 216 LPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKL 255
>gnl|CDD|237853 PRK14897, PRK14897, unknown domain/DNA-directed RNA polymerase
subunit A'' fusion protein; Provisional.
Length = 509
Score = 34.8 bits (80), Expect = 0.080
Identities = 25/153 (16%), Positives = 62/153 (40%), Gaps = 2/153 (1%)
Query: 21 SKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGE 80
++ ++ T K++ + S YS + P++ ++++ S E +
Sbjct: 27 FEVPKNITDGYITLKKKEFTYHVIISKIAP-YSNSNGIIKKKKPVLKTVLEIESEEKIEA 85
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIK-NKEKDKEKKIDKEKEKGKKEEKEK 139
I + + + + + ++K+ + N +D K ID K+ G +
Sbjct: 86 IDLMEFKRLFGRILDENMSFSTGELLTAEEKEYYEENSNEDVLKVIDDVKKLGFRLPPSV 145
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
EE K +K+ ++ E+ + +IR+E + +
Sbjct: 146 IEEIAKAMKKKELSDDEYEEILRRIREEYERAR 178
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 33.7 bits (78), Expect = 0.081
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
E+ + +++ KK E+EK+E +++ E E K++ + R+EE+ +EK+ D+
Sbjct: 119 EQGKSELEQEIKKLEEEKEELEKRVAELEAKLEA------IEKREEEERQIEEKRHADEI 172
Query: 182 KKLKKEKLKKKKK 194
LKK+ + K +
Sbjct: 173 AFLKKQNQQLKSQ 185
Score = 30.3 bits (69), Expect = 1.2
Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 111 KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
+ +IK E++KE+ + E K E +K E+E+++ +E + ++ + ++K+
Sbjct: 126 EQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE----IAFLKKQ 178
Score = 29.1 bits (66), Expect = 3.4
Identities = 11/55 (20%), Positives = 33/55 (60%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
+ E+ K + +++ K ++ K + + + +++ + E +K E+E+++ +EK+ E
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
>gnl|CDD|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed.
Length = 874
Score = 34.7 bits (81), Expect = 0.084
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 95 KKKEKEKIKKKKDK--KDKDKIKNK-------EKDKEKKIDKEKEKGKKEEKEKKEEKEK 145
+ E +++K+ K K+ ++++ K K E+ ++KE+EK E E+K K K
Sbjct: 809 VEAELARLEKELAKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREK--LAEYEEKLAKLK 866
Query: 146 KEEKEFK 152
+ K
Sbjct: 867 ERLARLK 873
Score = 30.5 bits (70), Expect = 1.8
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK---EKPVEKIRKEEKDSEKEKKSK 178
E ID E E + EKE K EKE + E K E V K +E + E+EK ++
Sbjct: 804 EGLIDVEAEL-ARLEKEL-----AKLEKEIERVEKKLSNEGFVAKAPEEVVEKEREKLAE 857
Query: 179 DKDKKLK-KEKLKKKKK 194
++K K KE+L + K
Sbjct: 858 YEEKLAKLKERLARLKA 874
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 35.0 bits (80), Expect = 0.089
Identities = 23/101 (22%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
K D + ++ + ++ ++ E + +E E E++ E E K + + E + RK
Sbjct: 632 KGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKG 691
Query: 168 EKDSEKEKKSKDKDKK---LKKEKLKKKKKEKERSSHEKEV 205
E++ E E ++K+ D K +E + + E E + E E+
Sbjct: 692 EQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEI 732
Score = 34.2 bits (78), Expect = 0.13
Identities = 27/134 (20%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 30 KDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKK 89
+ +T + + ++ K E E +D E+ V+ + GE + + +
Sbjct: 761 RKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSE 820
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEK--DKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
+ + + E +++ + +++ + K EK D D + ++EE+E++EE+E++E
Sbjct: 821 TQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEE 880
Query: 148 EKEFKMKEDKEKPV 161
E+E + +E+ E+P+
Sbjct: 881 EEEEEEEEENEEPL 894
Score = 33.0 bits (75), Expect = 0.29
Identities = 21/91 (23%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKD-KIKNKEKDKEKKIDKEKEK--G 132
E GE + + + + ++ + + ++K + +++ + + + + K EK +D G
Sbjct: 802 EHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGG 861
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEK 163
EE+E++EE+E++EE+E + +E++E+ E+
Sbjct: 862 DSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 30.7 bits (69), Expect = 1.5
Identities = 28/143 (19%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
Query: 69 IVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKE 128
+ KV + DL + ++ ++T ++ E+ + ++ ++ +E + E K + E
Sbjct: 621 VAKVMALGDLSKGDVAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENE 680
Query: 129 KE-------KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
E KG++E + + E KE + E + +E + + + E + E E + ++
Sbjct: 681 SEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEE 740
Query: 182 KKLKKEKLKKKKKEKERSSHEKE 204
+ + E + K E E KE
Sbjct: 741 VEDEGEGEAEGKHEVETEGDRKE 763
Score = 30.7 bits (69), Expect = 1.8
Identities = 19/93 (20%), Positives = 47/93 (50%), Gaps = 4/93 (4%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE----KDKEKKID 126
K D +K + + + + + K+D+K D + +++E++ +
Sbjct: 812 KDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEE 871
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 159
+E+E+ ++EE+E++EE+E +E + E ++K
Sbjct: 872 EEEEEEEEEEEEEEEEEENEEPLSLEWPETRQK 904
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 34.3 bits (79), Expect = 0.091
Identities = 24/138 (17%), Positives = 53/138 (38%), Gaps = 2/138 (1%)
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
+K+E+E++EE+++ K + E+ + E+ + ++E K K
Sbjct: 180 EKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGSSSPAKP 239
Query: 193 KKEKERSSHEKEVIPKLT-FKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTG 251
++S+ ++ P + K + K + S +V K +P + + T
Sbjct: 240 TSILKKSAAKRSEAPSSSKAKKNSRGIPKPRDALSSLVVRKK-AAPESTSQSPSSAEPTS 298
Query: 252 DSKQVWICPACGVQDDGS 269
+S Q + D S
Sbjct: 299 ESPQTAGNSSLSSLGDYS 316
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 34.2 bits (79), Expect = 0.098
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
K E K + ++ ++K+ + +ED E + K+ K E+ KK K K+ K K
Sbjct: 213 KSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKAL 272
Query: 189 LKKKKKEK 196
K K
Sbjct: 273 KKVVAKGM 280
Score = 33.1 bits (76), Expect = 0.21
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
+++ DL + + + K K KE KKK++ ++ ++ E EKK
Sbjct: 197 DLLCSYLPPDLYKELLKSLLIPEFKPLDKYLKESKKKKRET--EEDVEAAESRAEKKRKS 254
Query: 128 EKEKGKKEEKEKKEEKEKK 146
++E KK+ KE K K K
Sbjct: 255 KEEIKKKKPKESKGVKALK 273
Score = 32.7 bits (75), Expect = 0.28
Identities = 18/72 (25%), Positives = 36/72 (50%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
+ E+ K I + K K ++ K KK++ ++D + +++ + K K ++ K+K
Sbjct: 204 PPDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKP 263
Query: 134 KEEKEKKEEKEK 145
KE K K K+
Sbjct: 264 KESKGVKALKKV 275
Score = 31.5 bits (72), Expect = 0.74
Identities = 22/91 (24%), Positives = 37/91 (40%), Gaps = 14/91 (15%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
+++ K + + K+ +KK K+E +E E E + EK+ K KE
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKK--------KRETEEDVEAAESRAEKKRKSKE 256
Query: 156 DKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
E +K+ K+S+ K K K K
Sbjct: 257 ------EIKKKKPKESKGVKALKKVVAKGMK 281
Score = 31.1 bits (71), Expect = 0.84
Identities = 19/74 (25%), Positives = 36/74 (48%)
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
+ K+ K + + + ++ +K R+ E+D E + +K +K K+E KKK K
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 195 EKERSSHEKEVIPK 208
E + K+V+ K
Sbjct: 265 ESKGVKALKKVVAK 278
Score = 29.2 bits (66), Expect = 4.0
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK-KEEK 143
+ K+ + K K K+ K K + E+D E + ++K K +E+ K K+ K
Sbjct: 205 PDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPK 264
Query: 144 EKKEEKEFK 152
E K K K
Sbjct: 265 ESKGVKALK 273
>gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau;
Validated.
Length = 535
Score = 34.6 bits (80), Expect = 0.099
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
+ K K ++ K E + KEFK +K+K + E + E +K ++ +
Sbjct: 446 KGAKIKIQKALKSAENPLQSLKEFKPSNEKKKIDTESTAEMLEEEAKKDDEEVQET---- 501
Query: 188 KLKKKKKEKERSSHEKEVIPKLTFKFG 214
+LK+ + +E + +++I + FG
Sbjct: 502 QLKEATELQEFMINNEDLIEEAKELFG 528
Score = 33.5 bits (77), Expect = 0.24
Identities = 15/80 (18%), Positives = 36/80 (45%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
+ KIK +K K + K+ + +K+K + + +EE +K +E+ + + +
Sbjct: 446 KGAKIKIQKALKSAENPLQSLKEFKPSNEKKKIDTESTAEMLEEEAKKDDEEVQETQLKE 505
Query: 158 EKPVEKIRKEEKDSEKEKKS 177
+++ +D +E K
Sbjct: 506 ATELQEFMINNEDLIEEAKE 525
Score = 29.2 bits (66), Expect = 3.9
Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
K IK K K + ++ K+ K ++ K + + + E+ K++ E+ +E
Sbjct: 446 KGAKIKIQK--ALKSAENPLQSLKEFKPSNEKKKIDTESTAE---MLEEEAKKDDEEVQE 500
Query: 143 KEKKEEKEFKMKEDKEKP-VEKIRKE 167
+ KE E + + +E+ ++
Sbjct: 501 TQLKEATELQEFMINNEDLIEEAKEL 526
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 33.3 bits (77), Expect = 0.10
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query: 103 KKKKDKKD------KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
KKK K + ++ K+ ++ E + +KE E+ EKK EK K + ++ K K++
Sbjct: 34 KKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKE 93
Query: 157 KEKP 160
+ KP
Sbjct: 94 EPKP 97
Score = 32.5 bits (75), Expect = 0.20
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKI 125
DKK K EK + K +K K +K K K+++ + ++
Sbjct: 64 DKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 28.3 bits (64), Expect = 4.8
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKI 114
K +KK K K K + KK K ++ K ++
Sbjct: 73 KAEKKAEKAKAKAEKKKAKKEEPKPRL 99
Score = 27.9 bits (63), Expect = 6.2
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 5/51 (9%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
K KE ++ K + K K EKK EK K K E+K+ K+E+ K
Sbjct: 52 KDLKESLEAALLDKKELKAWEKA---EKK--AEKAKAKAEKKKAKKEEPKP 97
Score = 27.5 bits (62), Expect = 7.6
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNK 117
K +K +K KK EK K K +K K K++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 27.5 bits (62), Expect = 8.0
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 171 SEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+KE K+ +K +K K EK K K ++K+ E +
Sbjct: 64 DKKELKAWEKAEK-KAEKAKAKAEKKKAKKEEPK 96
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 34.7 bits (80), Expect = 0.10
Identities = 26/127 (20%), Positives = 61/127 (48%), Gaps = 13/127 (10%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK-KEEKEKKEE 148
+++ + K E+ + K++ + + + +E DKE +++ K +E+ EK K E + +
Sbjct: 347 EERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKR 406
Query: 149 KEFKMKEDKEKPVEKI--------RKEEKDSEKEKKSKDKDKKLKK--EKLK--KKKKEK 196
+ +++E+ ++ E++ E K +E E++ +DK ++KK KL+ K
Sbjct: 407 ELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSK 466
Query: 197 ERSSHEK 203
Sbjct: 467 YEQELYD 473
Score = 34.3 bits (79), Expect = 0.13
Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 5/134 (3%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
+S +GEI+K+ + ++ +K KE++++ ++ + + E K + + E +
Sbjct: 714 ASRKIGEIEKEIEQLEQEE---EKLKERLEELEEDLSSLEQE-IENVKSELKELEARIEE 769
Query: 134 KEEK-EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
EE K EE E E E + EE+ S E + ++ ++KL + L+K+
Sbjct: 770 LEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKE 829
Query: 193 KKEKERSSHEKEVI 206
EKE +++ I
Sbjct: 830 YLEKEIQELQEQRI 843
Score = 34.3 bits (79), Expect = 0.13
Identities = 25/168 (14%), Positives = 63/168 (37%), Gaps = 7/168 (4%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
+ + K ++ + E + ++ K + + + E ++ + + KE+ +
Sbjct: 795 EIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQ----ELQEQRIDLKEQIK 850
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
EK+ E KE+ E+ +E++ +D E K++ + +L++ +++ E
Sbjct: 851 SIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEA 910
Query: 202 EKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYD 249
+ E K + +E + S + P P D
Sbjct: 911 QIEKKRKRLSELKAKLEALEEELSE---IEDPKGEDEEIPEEELSLED 955
Score = 32.7 bits (75), Expect = 0.41
Identities = 30/131 (22%), Positives = 65/131 (49%), Gaps = 10/131 (7%)
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
+L E+ K+ + +D+ K +EK++K K + N+ K + ++ +E ++ +E
Sbjct: 372 ELEEVDKEFAETRDEL---KDYREKLEKLKRE------INELKRELDRLQEELQRLSEEL 422
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK-DKKLKKEKLKKKKKE 195
+ E K +++E+KE +I+K+E E+ K +++L K + + E
Sbjct: 423 ADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVE 482
Query: 196 KERSSHEKEVI 206
KE S ++E+
Sbjct: 483 KELSKLQRELA 493
Score = 32.3 bits (74), Expect = 0.51
Identities = 18/97 (18%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 111 KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK---PVEKIRKE 167
+ I KE + + ++ K + E + E E+ E + + ++ ++K ++++E
Sbjct: 307 ERSIAEKE-RELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEE 365
Query: 168 EKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+D E + DK+ +++LK +++ E+ E
Sbjct: 366 LEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
Score = 31.2 bits (71), Expect = 1.4
Identities = 27/113 (23%), Positives = 55/113 (48%), Gaps = 14/113 (12%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKE-KKIDKEKEKGKKEEKEKKEEKEKKEEKEF-K 152
K+K E++++ ++ ++ + EK ++ +++ +E+EK + + +EK + E E K
Sbjct: 172 KEKALEELEEVEENIERLDLIIDEKRQQLERLRREREK-AERYQALLKEKREYEGYELLK 230
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 205
KE E+ E I ++ E+E EKL ++ E E+ E E
Sbjct: 231 EKEALERQKEAIERQLASLEEE-----------LEKLTEEISELEKRLEEIEQ 272
Score = 29.7 bits (67), Expect = 3.3
Identities = 33/130 (25%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
KK+K + +E E+ ++ D +K + E+ + ++ E+ + +EK + E E +
Sbjct: 171 KKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLK 230
Query: 148 EKE--FKMKEDKEKPVEKIRKE-----EKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
EKE + KE E+ + + +E E+ SE EK+ ++ ++ L++ K K +E
Sbjct: 231 EKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQL 290
Query: 201 HEKEVIPKLT 210
KE I +L
Sbjct: 291 RVKEKIGELE 300
Score = 28.5 bits (64), Expect = 8.8
Identities = 30/180 (16%), Positives = 77/180 (42%), Gaps = 15/180 (8%)
Query: 37 EKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSS--EDLGEIKKDKSIKKDKKTH 94
E S + + E SK+++ V I + L + +K + +
Sbjct: 785 EARLSHSRIPEIQAELSKLEEE-------VSRIEARLREIEQKLNRLTLEKEYLEKEIQE 837
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE---EKEKKEEKEKKEEKEF 151
++++ +K++ K + +I+N KE+ ++ +E E + K++++E E
Sbjct: 838 LQEQRIDLKEQI-KSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEA 896
Query: 152 KM--KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 209
++ E K + +E ++++ E K+K + + + +++ K E E E+ + +
Sbjct: 897 QLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDV 956
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 34.2 bits (79), Expect = 0.11
Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 146 KEEKEFKMKEDKEK-PVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
KEE +++E KEK P +K E+ +++K K K KK K++ KK +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 31.9 bits (73), Expect = 0.59
Identities = 19/52 (36%), Positives = 32/52 (61%), Gaps = 4/52 (7%)
Query: 152 KMKEDKEKPVEKIR----KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
++KE+ K +E+I+ K K +EKK + + KK K++K KK+K+K R
Sbjct: 363 ELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 31.1 bits (71), Expect = 1.1
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK 124
EIK+ K K KK+E++K +K+K KK + K K K K +K
Sbjct: 374 EIKE----KYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 30.7 bits (70), Expect = 1.3
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
K E+IK+K K K K + K+ K KK K K+KGKK +K+ ++
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 30.7 bits (70), Expect = 1.5
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 70 VKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEK 129
V S +G+ K++ K+ ++ +K K KK+++KK + + K K++ K+ K K K
Sbjct: 352 VDYFSGRYIGDELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGK--KRK 409
Query: 130 EKGKK 134
+KG+K
Sbjct: 410 KKGRK 414
Score = 29.6 bits (67), Expect = 3.0
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 119 KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
++ K+I++ KEK K K KK E++K ++++ K K K+ K + +
Sbjct: 366 EELNKRIEEIKEKYPKPPK-KKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 29.6 bits (67), Expect = 3.8
Identities = 15/52 (28%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
K++ ++I++ K+K K K +E+ K +K ++K+K +K++ +K+++K +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQK--RKKKKKRKKKGKKRKKKGRK 414
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 34.5 bits (79), Expect = 0.11
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
D+K KEK + K++ DK K+ + ++E+++ ++ E+ KK E E+ + E +
Sbjct: 114 DRKDENLSSKEKTLESKEQSLTDKSKHID-EREEQV-EKLEEQKKAELERVAALSQAEAR 171
Query: 150 EFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
E + E + K +I +++E+E KD+ K+ K+ L
Sbjct: 172 EIILAETENKLTHEIATRIREAERE--VKDRSDKMAKDLL 209
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 33.7 bits (78), Expect = 0.12
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKN-KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
KD + KKE I K +K D I E +KEKK K K+E+K KEEK+K E
Sbjct: 66 KDFRKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKK----KAMSKEEKKAIKEEKDKLE 121
Query: 148 EK 149
E
Sbjct: 122 EP 123
Score = 28.7 bits (65), Expect = 4.4
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 103 KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKE 158
+K K+ IK+ EK I + E +KE+K+ ++EKK KE K K ++
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEA-EKEKKKAMSKEEKKAIKEEKDKLEEP 123
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 33.9 bits (78), Expect = 0.12
Identities = 20/104 (19%), Positives = 52/104 (50%), Gaps = 3/104 (2%)
Query: 95 KKKEKEKIKKKKDKKD--KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
K E E + K + + + ++N+ E +I + +E+ K+ E++ K+++E +
Sbjct: 36 AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALN 95
Query: 153 MKEDKEKP-VEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
++ K + + E + +E + +K+ + KE+L++ +K
Sbjct: 96 IEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139
Score = 33.1 bits (76), Expect = 0.17
Identities = 18/141 (12%), Positives = 62/141 (43%), Gaps = 14/141 (9%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKK-------------KKDKKDKDKIKNKEKDKE 122
+ L + K + + E E ++ ++ K+ ++K+ + ++E
Sbjct: 31 KALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERE 90
Query: 123 -KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
+ ++ E + K+ ++E + E+ K++++ E E++ + EK+ + + +++
Sbjct: 91 LRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEE 150
Query: 182 KKLKKEKLKKKKKEKERSSHE 202
+E+ ++ ++E +
Sbjct: 151 VAEIREEGQELSSKREELKEK 171
Score = 31.2 bits (71), Expect = 0.68
Identities = 22/85 (25%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 124 KIDKEKEKGKKEEKEKKEEKEKKE---EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 180
K+D EK++ + KE ++ +K + E K E E +E + + E E + +
Sbjct: 14 KLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRE 73
Query: 181 DKKLKKEKLKKKKKEKERSSHEKEV 205
K +EKL K E+E + E+
Sbjct: 74 RIKRAEEKLSAVKDERELRALNIEI 98
Score = 28.5 bits (64), Expect = 5.5
Identities = 30/130 (23%), Positives = 65/130 (50%), Gaps = 14/130 (10%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKD-------KKDKDKIKNKEKDKEKKI---DKE 128
++ + +S ++ + K+ +EK+ KD + K + E ++ +E
Sbjct: 59 NQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEE 118
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD--SEKEKKSKDKDKKLKK 186
EK +KE ++ KE E+ E+ + + E+ V +IR+E ++ S++E+ + D +L
Sbjct: 119 IEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLS 178
Query: 187 --EKLKKKKK 194
E+++K KK
Sbjct: 179 EYERIRKNKK 188
Score = 28.1 bits (63), Expect = 7.7
Identities = 21/94 (22%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
++ K+ + +D+ +E EK++K+ + K++++ EK+ + + +E+ +
Sbjct: 97 EIQIAKERINSLEDELAELMEEIEKLEKEI-EDLKERLERLEKNLAEAEARLEEEVAEIR 155
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
+E +E K+EE + K+ + E+IRK +K
Sbjct: 156 EEGQELSSKREELKEKLDPELLSEYERIRKNKKG 189
>gnl|CDD|235944 PRK07135, dnaE, DNA polymerase III DnaE; Validated.
Length = 973
Score = 34.3 bits (79), Expect = 0.12
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 29/146 (19%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKI--DKEKEKGKKEEKEKKEEKEKKEEKEFK 152
K KE+ ++K + KI+N +E+K+ ++ E K K ++E K F
Sbjct: 123 KNKEQLELKNYYINSNDPKIENAVYVQERKLLFAEDNEYLKILNKIGNNKEENSNFKFFD 182
Query: 153 MKEDKEKPVEKIRKE--------------------EKDSEKEKKSKDKDKKL-------K 185
++ E EKI K + D+ +S KK+ K
Sbjct: 183 FEKWFEDIDEKILKRTNYLVENINIEFPKKEFNLPDFDNNLGLESDLFLKKILKESVINK 242
Query: 186 KEKLKKKKKEKERSSHEKEVIPKLTF 211
K +LK KER ++E VI KL F
Sbjct: 243 KAELKYYPNVKERINYEYSVIKKLKF 268
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 34.2 bits (79), Expect = 0.13
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 131 KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK---EKKSKDKDKKLKKE 187
E +EK E++E++ ++ + E +EKI K+ K ++ + S++ L
Sbjct: 456 LPSPELEEKLEKEERELLQKRSSELTDED-LEKIIKDSKKLKERQDQPDSEEDLATLPTL 514
Query: 188 KLKKKKKEKERSSHEKEVI 206
KL E++S E EV
Sbjct: 515 KLGDVPDPIEKTSLETEVS 533
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 34.4 bits (79), Expect = 0.13
Identities = 25/145 (17%), Positives = 57/145 (39%), Gaps = 4/145 (2%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDK-DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
+++++ +IK KK +++ D + KEK E + D E + K +E E K+ K +
Sbjct: 354 ALSELEEEDENEIKFKKIEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFETKDNKNK 413
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSE-KEKKSKDKDKKLKKEKLKKKKKEKERSS--HEKEV 205
+ + + K+E + E + + ++ + ++ E + + +
Sbjct: 414 NSSFINKTENILTNSPLKDELLEKTTEIINIENPQEFEFGQIGNDIISTEIAQLDENQNL 473
Query: 206 IPKLTFKFGTDMEEKTKRESSPKIV 230
I F + E+ KI
Sbjct: 474 IDTGEFDLENNFSNSFNPENGNKID 498
Score = 28.6 bits (64), Expect = 6.6
Identities = 25/155 (16%), Positives = 58/155 (37%), Gaps = 10/155 (6%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKE-- 128
E+ K K I+++ + +++KI+ + D + K KN E+ E K +K
Sbjct: 355 LSELEEEDENEIKFKKIEENSIDNLDIKEKKIENENDIEGKSDTKNLEEGFETKDNKNKN 414
Query: 129 -----KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
K + K+E +K + ++ +E +I + +E + ++++
Sbjct: 415 SSFINKTENILTNSPLKDELLEKTTEIINIENPQEFEFGQIGNDIISTEIAQLDENQNLI 474
Query: 184 LKKE---KLKKKKKEKERSSHEKEVIPKLTFKFGT 215
E + + ++ + TF T
Sbjct: 475 DTGEFDLENNFSNSFNPENGNKIDENINETFDTST 509
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 32.9 bits (75), Expect = 0.13
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
EK+ ++KKD+ + +K DKE I KE E K E++E EE+E+++E+E + ED
Sbjct: 10 EKKPEEEKKDENLLEHVKITSWDKED-IIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDI 68
Query: 158 EKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
E E + EE++ E E+ + D KK
Sbjct: 69 EDEEEIVEDEEEEEEDEEDNVDLKDIEKK 97
Score = 31.0 bits (70), Expect = 0.62
Identities = 23/98 (23%), Positives = 49/98 (50%), Gaps = 3/98 (3%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEK---DKEKKIDKEKEKGKKEEKEK 139
DK + K EK++ ++++++D+++I+ E ++E D+E+E+ +E+
Sbjct: 31 WDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVD 90
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
++ EKK + + I K K +EK KK+
Sbjct: 91 LKDIEKKNINDIFNSTQDDNAQNLISKNYKKNEKSKKT 128
Score = 29.1 bits (65), Expect = 3.2
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 106 KDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIR 165
KD+K +D + +E+D+E+ + E + ++E E +EE+E+ EE +K+ ++K + I
Sbjct: 44 KDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIF 103
Query: 166 KEEKDSEKEKKSKDKDKKLKKEK 188
+D + KK +K K
Sbjct: 104 NSTQDDNAQNLISKNYKKNEKSK 126
>gnl|CDD|223831 COG0760, SurA, Parvulin-like peptidyl-prolyl isomerase
[Posttranslational modification, protein turnover,
chaperones].
Length = 320
Score = 33.9 bits (77), Expect = 0.14
Identities = 19/114 (16%), Positives = 44/114 (38%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
K K+ E+ K+ +K + + D + + + KG EE+E +
Sbjct: 94 IAVLDKLAKELLLGLSDEQGKQLIAEKPAFQDVEGKFDARAYLKRLRIKGLTEEQEAEAL 153
Query: 143 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
++K + K+ K + + + K E +++ K + K + K++
Sbjct: 154 RDKLQNKQQGKKVTEVQARHILVKAEAKAKEALALLKKGVREAKADFAELAKKQ 207
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 34.1 bits (79), Expect = 0.14
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 138 EKKEEKEKKEEKEFKMKEDK-EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
E+K E+ ++E ++ ++ + K E IR+ + + K KK+K + K+L EKL+ + E+
Sbjct: 240 EQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRL--EKLEARLAEE 297
Query: 197 ERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVI 231
K + K+V+
Sbjct: 298 RPVEEGK----------PLAFRFPPPGKRLGKLVL 322
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 33.4 bits (77), Expect = 0.15
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKN-KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
KD + KE++ I KK K D I E++KEKK KE E+K KEEKEK E
Sbjct: 65 KDFRKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKE----EKKAIKEEKEKLE 120
Query: 148 EK 149
E
Sbjct: 121 EP 122
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 33.9 bits (78), Expect = 0.15
Identities = 41/165 (24%), Positives = 75/165 (45%), Gaps = 16/165 (9%)
Query: 32 KTSPKEKMSSKEKTSPKEKEYSKVKDVEL-GVTPMVPNIVKVTSSEDLGEIKKDKSIKKD 90
TS + E + + K EL V +P+ + EDL ++ + I+K
Sbjct: 113 STSGAVPETKDETPASAPSSIKEQKSSELKKVDSQLPDPRALLKGEDLKTVETAEEIEKS 172
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
K ++K K K+KKD +K ++ +K + + I K+ K E ++ KEE +
Sbjct: 173 LKAMQQKWK---KRKKDLPNKQDLEEYKK-RLEAIKKKDIKNPLELQKIKEEFD------ 222
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD----KKLKKEKLKK 191
K+K++ + +KI+ + D + +KK D KK + LK+
Sbjct: 223 -KLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKR 266
Score = 33.5 bits (77), Expect = 0.23
Identities = 39/169 (23%), Positives = 68/169 (40%), Gaps = 5/169 (2%)
Query: 36 KEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHK 95
E + + E EK ++ +PN + + E K K IK + K
Sbjct: 157 GEDLKTVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQK 216
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
KE+ KK+ K DK KIK+ + D + + K + +K + + ++ E K + +K
Sbjct: 217 IKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQNDLKRLENK-YAIKS 275
Query: 156 DKEKPVEKI---RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
K + K +K K D+ + L K KK+ KE+ +
Sbjct: 276 GDLKNFAVDLFGPEIRKYLQKFLKYYDQAEPLLN-KSKKEPKEEAVETL 323
Score = 32.0 bits (73), Expect = 0.60
Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 15/145 (10%)
Query: 66 VPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDK---DKIKNKEKDKE 122
VP T + IK+ KS + K + + + K +D K ++I+ K +
Sbjct: 118 VPETKDETPASAPSSIKEQKSSELKKVDSQLPDPRALLKGEDLKTVETAEEIEKSLKAMQ 177
Query: 123 KKIDKEKE-----KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE-EKDSEKEKK 176
+K K K+ + +E K++ E +KK+ K + ++ +K++KE + D +K K
Sbjct: 178 QKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKS 237
Query: 177 SKDKDKKLKKE------KLKKKKKE 195
+K+ + KK+ +LKK +
Sbjct: 238 AKNDLQNDKKQLKADLAELKKAPQN 262
Score = 32.0 bits (73), Expect = 0.70
Identities = 31/135 (22%), Positives = 65/135 (48%), Gaps = 3/135 (2%)
Query: 73 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKG 132
++S + E K + ++K E K D + E K + +E EK
Sbjct: 113 STSGAVPETKDETPASAPSSIKEQKSSELKKVDSQLPDPRALLKGEDLKTVETAEEIEKS 172
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKE-KKSKDKDKKLKKE-KLK 190
K ++K ++++K + ++E K++ +E I+K++ + E +K K++ KLKKE K
Sbjct: 173 LKAMQQKWKKRKKDLPNKQDLEEYKKR-LEAIKKKDIKNPLELQKIKEEFDKLKKEGKAD 231
Query: 191 KKKKEKERSSHEKEV 205
K+K + ++ + +
Sbjct: 232 KQKIKSAKNDLQNDK 246
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 34.0 bits (78), Expect = 0.16
Identities = 35/112 (31%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 87 IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
I K K K+ +EK+ + +K+K K ID +K K K ++E K +EK
Sbjct: 1029 IDKLIKEKGKEIEEKVDQYI--SLLEKMKTKLSSFHFNIDIKKYKNPKIKEEIKLLEEKV 1086
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
E K+ E+K K +E K S + + DK+K + E KKKK E+
Sbjct: 1087 EALLKKIDENKNKLIEIKNK----SHEHVVNADKEKNKQTEHYNKKKKSLEK 1134
Score = 32.5 bits (74), Expect = 0.53
Identities = 25/133 (18%), Positives = 52/133 (39%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
+ + ++K SI K EK+ + K+ K+ D ++ D+ +I ++
Sbjct: 457 KSINQLKTLISIMKSFYDLIISEKDSMDSKEKKESSDSNYQEKVDELLQIINSIKEKNNI 516
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
+ E +K + E +E I+ + E K + + +K + K K
Sbjct: 517 VNNNFKNIEDYYITIEGLKNEIEGLIELIKYYLQSIETLIKDEKLKRSMKNDIKNKIKYI 576
Query: 196 KERSSHEKEVIPK 208
+E H K++I
Sbjct: 577 EENVDHIKDIISL 589
Score = 31.0 bits (70), Expect = 1.6
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE--- 130
S L E+ K D+ + EKE+ ++ KD ++ + E K++K KE
Sbjct: 1963 VSNKLSELNKITC--NDESYDEILEKEEYEELKDLRNSFNQEKAETLNNLKLNKIKEDFN 2020
Query: 131 --KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
K +E EK + K E K+ E+K+ ++ I +D EKE +S + E
Sbjct: 2021 SYKNLLDELEKSVKTLKASENIKKIVENKKTSIDAINTNIEDIEKEIESIN---PSLDEL 2077
Query: 189 LKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVK 235
LKK K + S +I + K D + E +I + +K
Sbjct: 2078 LKKGHKIE--ISRYTSIIDNVQTKISNDSKNINDIEKKAQIYLAYIK 2122
Score = 28.3 bits (63), Expect = 9.9
Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 1/131 (0%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
K IK + K + +K +KNK + K I+ + K EK
Sbjct: 875 MNKNINIIKTLNIAINRSNSNKQLVEHLLNNKIDLKNKLEQHMKIINTDNIIQ-KNEKLN 933
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
KE+++ + + K + EK E KSK+ L+K KEK+
Sbjct: 934 LLNNLNKEKEKIEKQLSDTKINNLKMQIEKTLEYYDKSKENINGNDGTHLEKLDKEKDEW 993
Query: 200 SHEKEVIPKLT 210
H K I KL
Sbjct: 994 EHFKSEIDKLN 1004
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 33.9 bits (78), Expect = 0.16
Identities = 38/201 (18%), Positives = 89/201 (44%), Gaps = 23/201 (11%)
Query: 36 KEKMSSKEKTSPKEKEYSKVKDVELGV---TPMVPNIVKVT----SSEDLGEIKKDKSIK 88
K K+ E+ P+ + V+ ++ V P+ + KV E G ++++
Sbjct: 358 KPKLEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREI 417
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
+ KK +E +++ +++ + K + +E +E EK + + E ++ + +++
Sbjct: 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREI----EKLESELERFRREVRDKVRKD 473
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPK 208
+E + ++ +I + EK+ E++KK ++ ++ E K +K E +V+ K
Sbjct: 474 REIRARD------RRIERLEKELEEKKKRVEELERKLAELRKMRKLELSGKGTPVKVVEK 527
Query: 209 LTFKFGTDMEEKTKRESSPKI 229
LT +E + E I
Sbjct: 528 LT------LEAIEEAEEEYGI 542
Score = 29.7 bits (67), Expect = 3.8
Identities = 34/167 (20%), Positives = 78/167 (46%), Gaps = 21/167 (12%)
Query: 39 MSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGE----IKKDKSIKKDKKTH 94
KE+ P+EKE ++ ++ V + L E ++++ S K +
Sbjct: 395 SKVKEEERPREKEGTEEEERREI-------TVYEKRIKKLEETVERLEEENSELKRELEE 447
Query: 95 KKKEKEKIKKK----KDKKDKDKIKNKE-KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
K+E EK++ + + + K++E + ++++I++ EK +E+K++ EE E+K +
Sbjct: 448 LKREIEKLESELERFRREVRDKVRKDREIRARDRRIER-LEKELEEKKKRVEELERKLAE 506
Query: 150 EFKMK----EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
KM+ K PV+ + K ++ +E + + K+ ++
Sbjct: 507 LRKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILVEDP 553
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 33.7 bits (77), Expect = 0.17
Identities = 22/78 (28%), Positives = 49/78 (62%), Gaps = 3/78 (3%)
Query: 112 DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDS 171
++++ ++ EK I KE + ++E +++ E+ K+EE FK + E+ ++++ ++E++
Sbjct: 364 ERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFK-RVALEEGLKELEQDEENF 422
Query: 172 EKE--KKSKDKDKKLKKE 187
KE K+ K+ +KLK E
Sbjct: 423 LKELSKEEKELLEKLKME 440
>gnl|CDD|227441 COG5110, RPN1, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 881
Score = 33.8 bits (77), Expect = 0.17
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 18/108 (16%)
Query: 106 KDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIR 165
D+ DK K + D++ +I EK+ K++K+K+EE++ EE + +K D E VE+I
Sbjct: 2 VDESDK---KQQTIDEQSQISPEKQTPNKKDKKKEEEEQLSEE-DAMLKGDLELLVERI- 56
Query: 166 KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKF 213
+D D L+ L KE +SS KF
Sbjct: 57 ------------QDPDIDLQNNSL-NMLKEVIKSSTSSMTAVPKPLKF 91
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 32.1 bits (73), Expect = 0.19
Identities = 16/77 (20%), Positives = 46/77 (59%)
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
+K +EE +++++ E E K++E +++ E++RKE+++ +E++ K + + ++K+
Sbjct: 21 QKFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKM 80
Query: 190 KKKKKEKERSSHEKEVI 206
+ +K ++ H +
Sbjct: 81 EDEKLQETWHEHNLALA 97
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 33.1 bits (76), Expect = 0.20
Identities = 18/120 (15%), Positives = 49/120 (40%), Gaps = 1/120 (0%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
+ IK K + ++ + + D ++ K + + + + + + +K+
Sbjct: 171 NLINSIKPKLRKKLQALKEEIASLRQLADELNLCDPLEL-EKARQELRSLSVKISEKRKQ 229
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
+E ++E ++ + K + +E+I + EK E+ + K+ K K+ +K
Sbjct: 230 LEELQQELQELTIAIEALTNKKSELLEEIAEAEKIREECRGWSAKEISKLKAKVSLLQKL 289
>gnl|CDD|218370 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 1, represents the clamp domain, which a
mobile domain involved in positioning the DNA,
maintenance of the transcription bubble and positioning
of the nascent RNA strand.
Length = 330
Score = 33.0 bits (76), Expect = 0.22
Identities = 21/103 (20%), Positives = 36/103 (34%), Gaps = 2/103 (1%)
Query: 93 THKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
K K+ K+ K K + KK K ++ K + + +
Sbjct: 107 ESVKYFFLKVVIDPKGKNSKKRLKKINNLCKKK-SICSKCGEDNGGLKAFEGCGKYQPKI 165
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
K+ E ++ E + KEK K +K+ + KK KE
Sbjct: 166 SKDGAEAIKALLKNIEIEELKEKLRKLNPEKV-LQIFKKISKE 207
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 33.5 bits (77), Expect = 0.23
Identities = 25/143 (17%), Positives = 55/143 (38%), Gaps = 2/143 (1%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDK-KDKDKIKNKEKDKEKKIDKEKEKGKKEEK 137
++++ SI+ K K E K K+ ++ + + K ++ +K + K +K
Sbjct: 940 IDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKK 999
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
E E ++ + K+ KE PVE + S+ + LK + K E
Sbjct: 1000 ELAELSKQYGALQESTKQLKELPVEVAEL-QSASKIISSESTELSILKPLQKLKGLLLLE 1058
Query: 198 RSSHEKEVIPKLTFKFGTDMEEK 220
+ + + + +++K
Sbjct: 1059 NNQLQARYKALKLRRENSLLDDK 1081
Score = 32.4 bits (74), Expect = 0.49
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKD----KDKIKNKEKDKEKKIDKEK--EKGKKEEK 137
KSI K + + E E I+ KK + K + + KK+ E+G E
Sbjct: 891 VKSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEY 950
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
K E K E E K+KE E+ + ++K + K+ + K KKE + K+
Sbjct: 951 VKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGA 1010
Query: 198 RSSHEKEV 205
K++
Sbjct: 1011 LQESTKQL 1018
Score = 32.4 bits (74), Expect = 0.57
Identities = 25/124 (20%), Positives = 48/124 (38%), Gaps = 4/124 (3%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
KK+ + + + E++ + K D K +K + E +I + K+ + E E
Sbjct: 865 KKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLE 924
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK----KSKDKDKKLKKEKLKKKKKEKE 197
K + + K+ + + + K E K +SK K+ + E L KK
Sbjct: 925 FKTELIARLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILV 984
Query: 198 RSSH 201
R +
Sbjct: 985 REGN 988
Score = 29.7 bits (67), Expect = 3.3
Identities = 27/168 (16%), Positives = 58/168 (34%), Gaps = 12/168 (7%)
Query: 50 KEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIK-KDKSIKKDKKTHKKKEKE--KIKKKK 106
K S +K V L + + + K SS+ + ++ K + I + KK + E +
Sbjct: 892 KSISSLKLVNLELESEIIELKKSLSSDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYV 951
Query: 107 DKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK 166
+ +K+ E ++ ++ ++ KK +E + E + KE E +
Sbjct: 952 KLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKANSELKNFKKELAELSKQYGAL 1011
Query: 167 EEKDSEKEKKSK---------DKDKKLKKEKLKKKKKEKERSSHEKEV 205
+E + ++ E K +K + E
Sbjct: 1012 QESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKLKGLLLLEN 1059
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 32.9 bits (76), Expect = 0.24
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK 124
K +K++ K +KE K +K K+K + K + K
Sbjct: 50 KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 32.1 bits (74), Expect = 0.43
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 71 KVTS-SEDLGEIKKD-KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK 121
+VT+ +E E+K++ K+ DKK K K + KK +K + K +
Sbjct: 41 EVTNLNEQYKEMKEELKAALLDKKELKAWHKAQ---KKKEKQEAKAAKAKSKP 90
Score = 30.6 bits (70), Expect = 1.4
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 102 IKKKKDKKDKDKIKN--------KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM 153
++KK +K + ++ N KE+ K +DK KE + +KK+EK++ + + K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDK-KELKAWHKAQKKKEKQEAKAAKAKS 88
Query: 154 K 154
K
Sbjct: 89 K 89
Score = 30.2 bits (69), Expect = 1.8
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 166 KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
K +KE K+ K +K KKEK + K + +
Sbjct: 57 KAALLDKKELKAWHKAQK-KKEKQEAKAAKAKSKPR 91
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 33.4 bits (77), Expect = 0.24
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 26/106 (24%)
Query: 111 KDKIKNKE------------KDKEKKIDKEKEKGKKEEKEKKEEKEKKEE---------- 148
KDK KE +++ +++ KE E +E+K++KEE E +
Sbjct: 480 KDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEK 539
Query: 149 --KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK-KLKKEKLKK 191
KE K E+ EKI K + ++ K +D ++ K K E+L++
Sbjct: 540 TLKEAGDKLPAEE-KEKIEKAVAELKEALKGEDVEEIKAKTEELQQ 584
Score = 31.5 bits (72), Expect = 0.87
Identities = 30/118 (25%), Positives = 57/118 (48%), Gaps = 13/118 (11%)
Query: 89 KDKKTHKKKEKEKIK-KKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK-- 145
KDK T K++ I +++I+ K+ E + E++K +KEE E + +
Sbjct: 480 KDKGTGKEQ---SITITASSGLSEEEIERMVKEAE--ANAEEDKKRKEEIEARNNADSLA 534
Query: 146 -KEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
+ EK K DK EK + E+ +E ++ K +D E++K K +E +++ +
Sbjct: 535 YQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGED----VEEIKAKTEELQQALQK 588
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 33.4 bits (77), Expect = 0.24
Identities = 12/80 (15%), Positives = 37/80 (46%)
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
D + + +++ + ++ + E++ E+ ++ E+ K E D + + D D
Sbjct: 101 FDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIAT 160
Query: 185 KKEKLKKKKKEKERSSHEKE 204
++ L+++++ +E E
Sbjct: 161 RERSLERRRRRREWEEKRAE 180
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 33.0 bits (76), Expect = 0.24
Identities = 30/155 (19%), Positives = 87/155 (56%), Gaps = 24/155 (15%)
Query: 76 EDLGEIKKDKSIKKDKKTHK-----KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
E+ E+++ + K +K +EK++IK ++ ++++ + E+++ K + +E+E
Sbjct: 1 ENSEELRELNEKLRAAKVNKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEE 60
Query: 131 KGKKEEKEKK----------EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 180
+ +K ++E++ EE+EK+ ++E++ + + + +++I + ++ ++ + + +
Sbjct: 61 RERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKR 120
Query: 181 DKKLKK---------EKLKKKKKEKERSSHEKEVI 206
+K+ K E++++K++EKER E+ I
Sbjct: 121 EKQKKLREEIDEFNEERIERKEEEKEREREEELKI 155
Score = 32.6 bits (75), Expect = 0.32
Identities = 29/130 (22%), Positives = 74/130 (56%), Gaps = 7/130 (5%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
K+++K +++E+ KI + + +K + + + + + +E+K +KE+E + ++++ E E
Sbjct: 138 IERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDE 197
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD------KKLKKEKLKKKKKEKER 198
++E E + +E+ K R++EK+ E EK+ + K ++ +EK ++ ++E+
Sbjct: 198 REELDELRADLYQEEYERKERQKEKE-EAEKRRRQKQELQRAREEQIEEKEERLQEERAE 256
Query: 199 SSHEKEVIPK 208
E+E + +
Sbjct: 257 EEAERERMLE 266
Score = 32.6 bits (75), Expect = 0.37
Identities = 22/123 (17%), Positives = 80/123 (65%), Gaps = 4/123 (3%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIK-KKKDKKDKDKIKNKEKDKEKKIDK---EKEKGKKE 135
E ++++ K++++ + +E+I+ ++K ++++ + + +E+++ +I + E+++ + +
Sbjct: 58 EEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQ 117
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
EK +K++K ++E EF + + K EK R+ E++ + + ++K ++ ++ + ++++++
Sbjct: 118 EKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERK 177
Query: 196 KER 198
+E+
Sbjct: 178 EEK 180
Score = 28.3 bits (64), Expect = 8.1
Identities = 23/119 (19%), Positives = 73/119 (61%), Gaps = 5/119 (4%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKI-----KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK 145
++ K++++E ++ ++++ D+I + E + ++K +K+K+ ++ ++ +E E+
Sbjct: 81 EEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIER 140
Query: 146 KEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
KEE++ + +E++ K +E R++ + E+ + + + K+ K+ ++ + + ++E + E+E
Sbjct: 141 KEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDERE 199
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 33.1 bits (76), Expect = 0.24
Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 18/191 (9%)
Query: 20 PSKMKDKVSPKDKTSPKEKMSSK---EKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSE 76
P + + P++ + K+ + ++ K + K VK ++ V+ +
Sbjct: 180 PPEELENGEPRNIVAKKDGIITRMYVTKGTAVVKVGDVVKKGDILVSGQIGKEGNEYEVH 239
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
GE+ + + + K E + +K K I K K K E EK KEE
Sbjct: 240 AKGEVLAETWYESTVEVPLKTNFEVLTGEKITKHYLSIGGK-KLPLKFRKNEFEKYDKEE 298
Query: 137 KEKK-----------EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD---KDK 182
EK + E ++ +K KE+ VEK +K K +++ KD KD+
Sbjct: 299 DEKPLFLKWKLPISIVRETYYEVQDKVVKLTKEEAVEKGKKLAKKKLEKEIDKDAKIKDE 358
Query: 183 KLKKEKLKKKK 193
K+ E+++ K
Sbjct: 359 KVLHERVENGK 369
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 32.3 bits (74), Expect = 0.25
Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
+KE+ E+ +E E+ +K E+E+ EE+E +EE E + ++ + +E +E KD
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLR 61
Query: 175 KKSK--DKDKKLKKEKLKKKKKEKER 198
+++ + K+ ++E+ + KK E+
Sbjct: 62 AQAEFENLRKRTEREREEAKKYAIEK 87
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 33.3 bits (76), Expect = 0.25
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 121 KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE--------DKEKPVEKIRKEEKDSE 172
E++ID + + ++E E + E +++ +K ++ D+ K K+ +EE+ +
Sbjct: 541 TEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKA-PKLTEEEEAAL 599
Query: 173 KEKKSKDKDKKL 184
K K + +K L
Sbjct: 600 KMKMTDTSEKPL 611
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 32.4 bits (74), Expect = 0.26
Identities = 27/106 (25%), Positives = 58/106 (54%), Gaps = 4/106 (3%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
++K + K+ KD ++K + + +E + E+EK KEEK +KE++E+K K +
Sbjct: 67 EEKVDQYEKENKDSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAK-E 125
Query: 155 EDKEKPVEKIRKEEKDSEK---EKKSKDKDKKLKKEKLKKKKKEKE 197
+DK++ ++++ + + K + K + + EKL++KK+
Sbjct: 126 KDKQEIIDELETSNLPANVIIAQHKKQSKQLESQVEKLERKKRVTF 171
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 32.3 bits (74), Expect = 0.26
Identities = 31/103 (30%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE-KEFKM 153
++ ++ +KK KD ++K+++K + + ++ K K ++ E K+ +K++KE KE K
Sbjct: 65 IEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELIKEGKK 124
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+K K +K ++ KKSK DK L+K++ K KEK
Sbjct: 125 PYYLKKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEK 167
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 33.4 bits (76), Expect = 0.27
Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 4/113 (3%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKE--KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
KKE + ++ K + K K+K+ + EK++ E + EK+ EEK++K+E+E
Sbjct: 453 LKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAEEKKRKKEEEET 512
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 205
+ R+E +S K+ K +D + ++KK + K KE+E EKE
Sbjct: 513 AARAAAQAAAS-REECAESLKQAK-QDLEMEIKKLEHDLKLKEEECRMLEKEA 563
>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0). Part of the CF(0)
(base unit) of the ATP synthase. The base unit is
thought to translocate protons through membrane (inner
membrane in mitochondria, thylakoid membrane in plants,
cytoplasmic membrane in bacteria). The B subunits are
thought to interact with the stalk of the CF(1)
subunits. This domain should not be confused with the ab
CF(1) proteins (in the head of the ATP synthase) which
are found in pfam00006.
Length = 132
Score = 31.5 bits (72), Expect = 0.27
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE-EKEKKEEKEFKMKEDKEKPVEKIRK 166
+ K+KI N K+ E+++ + + E++ + E E K++ +K E+I
Sbjct: 29 DERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIIN-NAKKEAQKLKEEILA 87
Query: 167 E-EKDSEKEKKSKDKDKKLKKEKLKK 191
E +KD+E+ +S + + +KE+
Sbjct: 88 EAQKDAERLLESARAEIEQEKEQALA 113
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 32.8 bits (75), Expect = 0.28
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 84 DKSIKKDKK-THKKKEKEKIKKKKDKKDK--DKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
DK +D K + +KEK+ I+ + + D ++I++K + +K+ID+ K + KK +KE
Sbjct: 31 DKIQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIA 90
Query: 141 EEKEKKEEKEFKMKE 155
E KE E++ +K+
Sbjct: 91 ELKENIVERQELLKK 105
Score = 29.3 bits (66), Expect = 3.2
Identities = 16/104 (15%), Positives = 39/104 (37%), Gaps = 5/104 (4%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIK--KKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
L + K+DK ++K+ + + E + + + + + + +++ +K I K
Sbjct: 150 LEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASA 209
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD 179
EK +E+K E E ++ + E+
Sbjct: 210 LGEKAALEEQKALAE---AAAAEAAKQEAAAKAAAQEQAALQAA 250
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 33.2 bits (76), Expect = 0.29
Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 5/73 (6%)
Query: 129 KEKGKKEEKEKKEEKEKK-EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
KE+G EE +K E KM+E E+ E EE D K + + K+
Sbjct: 818 KEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGE----EEDDQTSSKPVANGNANNLKK 873
Query: 188 KLKKKKKEKERSS 200
KKK KE S
Sbjct: 874 DSSSKKKSKEGKS 886
Score = 32.0 bits (73), Expect = 0.66
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
E K E+ +E E + + KPV + +K S K K + + + K++E
Sbjct: 838 ENAGKMEEYVEENGEEEDDQTSSKPVA----NGNANNLKKDSSSKKKSKEGKSVLIKQEE 893
Query: 196 KE 197
+E
Sbjct: 894 RE 895
Score = 29.7 bits (67), Expect = 3.2
Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 79 GEIKKDKSIKKDKKTHK--KKEKEKIKKKKDKKDKDKIKNKEKDKEKKID-------KEK 129
G IK++ + ++ +K E K ++ +++ + ++ K + K+
Sbjct: 815 GMIKEEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKD 874
Query: 130 EKGKKEEKEKKEEKEKKEEKE 150
KK+ KE K K+EE+E
Sbjct: 875 SSSKKKSKEGKSVLIKQEERE 895
>gnl|CDD|227470 COG5141, COG5141, PHD zinc finger-containing protein [General
function prediction only].
Length = 669
Score = 33.0 bits (75), Expect = 0.29
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 241 PVAAADEYDTGDSKQVWICPAC-GVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWF 299
P+ +DE+D IC C ++ S ++ CDGC+ H C G+ PE W
Sbjct: 185 PIEPSDEFDD-------ICTKCTSTHNENSNAIVFCDGCEICVHQSCYGIQFLPE-GFWL 236
Query: 300 CPKC 303
C KC
Sbjct: 237 CRKC 240
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 32.1 bits (73), Expect = 0.31
Identities = 29/91 (31%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 114 IKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK 173
I K +KE++ + E K +E+E+K E E+ E+++ + ++E E+ KEE E+
Sbjct: 32 IIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEE 91
Query: 174 EKKSKDKDKKLKKEKLKKKKKE-KERSSHEK 203
EK+ + +D K ++ K+KK KE + EK
Sbjct: 92 EKEEEAEDVKQQEVFSFKRKKPFKEMNLEEK 122
Score = 28.6 bits (64), Expect = 4.1
Identities = 24/83 (28%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
KK +++ +++K+ D+ +E+ K + + EKEK + E E+++ E++E++E +
Sbjct: 34 KKADEK--EEEKENSDEHVKSKEEEQKIEYEEAEKEK-EAGEPEREDIAEQQEKEEIAQE 90
Query: 155 EDKEKPVEKIRKEEKDSEKEKKS 177
E+KE+ E ++++E S K KK
Sbjct: 91 EEKEEEAEDVKQQEVFSFKRKKP 113
>gnl|CDD|232969 TIGR00422, valS, valyl-tRNA synthetase. The valyl-tRNA synthetase
(ValS) is a class I amino acyl-tRNA ligase and is
particularly closely related to the isoleucyl tRNA
synthetase [Protein synthesis, tRNA aminoacylation].
Length = 861
Score = 33.1 bits (76), Expect = 0.32
Identities = 24/120 (20%), Positives = 50/120 (41%), Gaps = 13/120 (10%)
Query: 19 PPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVEL--GVTPMVPNIVKVTSSE 76
PP+ + + E + + K +VE+ + +V++
Sbjct: 746 PPNAPLKVLL---IYTEAETAERLKLNAVDIKGAINFSEVEVVIEKPEVTEAVVELVPGF 802
Query: 77 DL-----GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEK 131
++ G I K K + + +K K++KE I+ + +++ +K K + I+KEKEK
Sbjct: 803 EIIIPVKGLINKAKELARLQKQLDKEKKEVIRIEGKLENEGFVKKAPK---EVIEKEKEK 859
Score = 30.4 bits (69), Expect = 1.8
Identities = 23/125 (18%), Positives = 47/125 (37%), Gaps = 12/125 (9%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKD-------KKDKDKIKNKEKDKEKKIDKEKEKGK 133
I +++K + + + + K + IK E ++ EK +
Sbjct: 733 IVSIRNLKAESNIPPNAPLKVLLIYTEAETAERLKLNAVDIKGAINFSEVEVVIEKPEVT 792
Query: 134 KEEKEKKEEKEKK-EEKEFKMKEDK----EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
+ E E K K + +K ++K +KE E + +++ KK KE
Sbjct: 793 EAVVELVPGFEIIIPVKGLINKAKELARLQKQLDKEKKEVIRIEGKLENEGFVKKAPKEV 852
Query: 189 LKKKK 193
++K+K
Sbjct: 853 IEKEK 857
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 32.9 bits (75), Expect = 0.35
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
+EK ++ EK KEE E++ + E + + ++EK + + + +E EK ++EK
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEK---------RREK 302
Query: 189 LKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSP 227
L+ K+ RS+ I FK G ++ R S P
Sbjct: 303 LQNLLKKASRSADNVWYIEPSEFKAGDTVKLYYNRSSGP 341
Score = 28.3 bits (63), Expect = 8.5
Identities = 16/51 (31%), Positives = 30/51 (58%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIR 165
K +E +K K + E+E+ +E++ ++EEK E + K + EK EK++
Sbjct: 254 KRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQ 304
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 33.0 bits (75), Expect = 0.37
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 70 VKVTSSEDLGEIKKDKSIKK----DKKTHKKKEK-EKIKKKKDKKDKDKIKNKEKDKEKK 124
++V + + E + +K KKT+ EK E K+ +KK++ KIKN+ + K
Sbjct: 86 IEVYNKQFKHEQLWNSQVKGILTLGKKTNDDLEKIESKKESINKKNEKKIKNEASLQVKT 145
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEE--KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
+EKE+ + +K EE KE+ ++K KI KE ++++ +
Sbjct: 146 QREEKEEKDFIADCWRNLYKKNEERFKEYLENFKRKKFKRKILKEFENAKINASEIVGLE 205
Query: 183 KLK 185
K+K
Sbjct: 206 KVK 208
Score = 31.4 bits (71), Expect = 0.94
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 12/150 (8%)
Query: 120 DKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK---K 176
K+ D EK + KKE KK EK+ K E ++K +E EK K+ K
Sbjct: 110 GKKTNDDLEKIESKKESINKKNEKKIKNEASLQVKTQRE---EKEEKDFIADCWRNLYKK 166
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKS 236
++++ K+ + +KK K K E I EK K +IV + ++
Sbjct: 167 NEERFKEYLENFKRKKFKRKILKEFENAKINASE----IVGLEKVK--EKIEIVFRHNQT 220
Query: 237 PSPPPVAAADEYDTGDSKQVWICPACGVQD 266
P ++D+ ++ +W G D
Sbjct: 221 PLALLECNLTDFDSIENHSIWEQKIVGSGD 250
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell surface
and is extremely large (although apparently lacking in
repeat structure) and is important for the process of
invasion of the RBCs by the parasite. These proteins are
found in P. falciparum, P. vivax and P. yoelii.
Length = 2757
Score = 33.1 bits (75), Expect = 0.38
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
++++ +IK D K H K E+IKKK + D+IK + D E DK
Sbjct: 1110 ADEINKIKDDIKNLDQKIDHHIKALEEIKKKSENY-IDEIKAQINDLEDVADKAISNDDP 1168
Query: 135 EEKEKKEEK-EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD----KKLKKEKL 189
EE EKK E K +K+ + ++ +K + +I + EKD ++ K + K L K L
Sbjct: 1169 EEIEKKIENIVTKIDKKKNIYDEIKKLLNEIAEIEKDKTSLEEVKGINLSYGKNLGKLFL 1228
Query: 190 KKKKKEKERSSH 201
+K +EK++S H
Sbjct: 1229 EKIDEEKKKSEH 1240
Score = 28.5 bits (63), Expect = 9.6
Identities = 49/170 (28%), Positives = 77/170 (45%), Gaps = 18/170 (10%)
Query: 82 KKDKSIKKDKKTHKKKE-KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
K +K IKK K +E K KI+ D KD D+ K K+ + I E+ K
Sbjct: 1387 KSEKLIKKIKDDINLEECKSKIESTLDDKDIDECIKKIKELKNHILSEESNIDTYFKNAD 1446
Query: 141 EEKEKKEE--KEFKMKEDKEKPVEKIRKEEKDSEKE------KKSKDKDKKLKKEKLKKK 192
E E K +M ++K + + KI+K+ ++ + K+ DK K K E K
Sbjct: 1447 ENNENVLLLFKNIEMADNKSQHILKIKKDNATNDHDFNINELKEHIDKSKGCKDEADKNA 1506
Query: 193 K---KEKERSSHEKEVIPKLTFKFGT----DMEEKTKRESSPKIVIKPVK 235
K K KE K+ + +L K+ + KTK++S +I+IK +K
Sbjct: 1507 KAIEKNKELFEQYKKDVTELLNKYSALAIKNKFAKTKKDS--EIIIKEIK 1554
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 32.7 bits (75), Expect = 0.39
Identities = 18/89 (20%), Positives = 29/89 (32%), Gaps = 14/89 (15%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKE--KKEEKEFKMK---------EDKEKPVEKIRKEEKD 170
K E G KEK+ E++ EE+ K D K ++ + K
Sbjct: 4 TKNFRVPSEYGFVSTKEKRVERKAATAEEESLKNIDISDLFERSVDMNKDPKEATDQVKA 63
Query: 171 SEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
K + + +L + KE S
Sbjct: 64 V---DKHSEIESLNVGMRLDVRLSSKELS 89
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 32.0 bits (73), Expect = 0.40
Identities = 23/119 (19%), Positives = 61/119 (51%), Gaps = 5/119 (4%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
KK + K +EK ++ +++ + ++ + ++ + K E+ + E +E + ++ E+ R +
Sbjct: 51 KKAFELSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQEQTQQEQQRAQ 110
Query: 168 EKDSEKEKKSKDK--DKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRE 224
+D K+ + + ++ + E+L K ++E S +E + + T + +M +T E
Sbjct: 111 YQDELARKRYQKELEQQRRQNEELLKMQEE---SVLRQEAMRRATEEEILEMRRETIEE 166
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 31.6 bits (72), Expect = 0.40
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
+KD E D +EE E +E EE++ K+ K K + + + E +
Sbjct: 33 KKDIEINTDYL-----QEETELDKELFTPEEQK-KITFQKHKEKPEQEELKNQLFSENAT 86
Query: 178 KDKDKKLKKEKLKKKKKEKERSSHEKE 204
++ K K++L + E+ SS E
Sbjct: 87 ENNTVKATKKQLFSSEYEQTSSSSEST 113
Score = 31.2 bits (71), Expect = 0.50
Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 5/99 (5%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
KKD I D + + +++ +++K K+KEK +++++ K + E +
Sbjct: 31 YEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEEL---KNQLFSENATE 87
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
+ +++ F + E+ ++ K+ S
Sbjct: 88 NNTVKATKKQLF--SSEYEQTSSSSESTSEEETKKTSSI 124
>gnl|CDD|227666 COG5374, COG5374, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 31.7 bits (72), Expect = 0.40
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK----KEEKEKKEEKEFK 152
+E K K DK + D K + ++ +I E + +EE K E ++ +KE
Sbjct: 129 EENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLDKYNELREQVQKESS 188
Query: 153 MKED 156
K++
Sbjct: 189 KKKE 192
Score = 31.7 bits (72), Expect = 0.42
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 69 IVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKD--KIKNKEKDKEKKID 126
IV + + E+ ++ + K K + + +K + K ++ +++ K +D
Sbjct: 115 IVVMRVMSIVEEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLLD 174
Query: 127 KEKEKGKKEEKEKKEEKEK 145
K E E+ +K+ K+K
Sbjct: 175 KYNELR--EQVQKESSKKK 191
Score = 30.9 bits (70), Expect = 0.79
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
++ K K E K + +K + + ++ +EE FK+ + + E+++KE
Sbjct: 129 EENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEEL-FKLLDKYNELREQVQKES 187
Query: 169 KDSE 172
+
Sbjct: 188 SKKK 191
Score = 28.2 bits (63), Expect = 5.6
Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+E EE KK K KM+ D ++RK + E +K++++ KL +K + +++
Sbjct: 125 EEMLEENAKKGGKIDKMEADSTDLKARLRKAQILLEGLQKNQEELFKL-LDKYNELREQV 183
Query: 197 ERSSHEKE 204
++ S +K+
Sbjct: 184 QKESSKKK 191
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 31.9 bits (73), Expect = 0.40
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 91 KKTHKKKEKEKIKK--KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK 145
KK K+EK IK K D +K+++K + KE++K K EKEK EE+
Sbjct: 68 KKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 32.8 bits (75), Expect = 0.41
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
++ K++ KK++DKIK K+I KE+ + K
Sbjct: 528 GTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILK 573
Score = 30.1 bits (68), Expect = 2.4
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
E ++E+ ++ KE + + KE ++ K+ E SK+ K
Sbjct: 521 EMAREEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILKLR 575
Score = 29.3 bits (66), Expect = 4.4
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 50 KEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKK 109
+ KV + + IV + E+ G ++ K+ K ++ K KE +
Sbjct: 499 LQARKVVNELVKKYGPPDKIVIEMAREEQGTNFGKRNSKERYKKNEDKIKEFASALGKEI 558
Query: 110 DKDKI-KNKEKDKEKKIDKEKEKGK 133
K++ +N K+ K ++ GK
Sbjct: 559 LKEEPTENSSKNILKLRLYYQQNGK 583
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 31.7 bits (72), Expect = 0.41
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 4/88 (4%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
K ++ K++K+ +K+K+ K K K ++ ++K E + + EK E
Sbjct: 101 AKFEAWKEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAA 160
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEK 169
E+ E+E E +E P E+ EE
Sbjct: 161 EEAAAAEEE----EAEEAPAEEAPAEES 184
Score = 29.7 bits (67), Expect = 1.9
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Query: 99 KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE--KKEEKEKKEEKEFKMKED 156
+EK K KKDK K K+ K+ ++ EK+ + + +K+ E +
Sbjct: 108 EEKEGKVNAKKDKLS-KAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAA 166
Query: 157 KEKPVEKIRKEEKDSEKEK 175
+E+ E+ EE +E+
Sbjct: 167 EEEEAEEAPAEEAPAEESA 185
Score = 27.4 bits (61), Expect = 9.2
Identities = 16/56 (28%), Positives = 26/56 (46%)
Query: 121 KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
KE+K K K K K KK K+ E E K+ E + + V + + E + ++
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEE 162
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 32.5 bits (74), Expect = 0.42
Identities = 28/117 (23%), Positives = 43/117 (36%), Gaps = 9/117 (7%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
K ++I+K+ D +K E K K+KK K
Sbjct: 374 KGIYDQIEKEMDAFSIQASSAGLIGSSEKSLGSNESSPAASNSDKGSKKKKG----KSTS 429
Query: 156 DKEKPVEKIRKEEKDSEKE-----KKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIP 207
K E I +E+D+ K+ KK +DK K+ + KKE +S + IP
Sbjct: 430 TKGGTAESIPDDEEDAPKKGKKNQKKGRDKSSKVPSDSKAGGKKESVKSQEDNNNIP 486
Score = 28.6 bits (64), Expect = 6.5
Identities = 23/104 (22%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 73 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDK------IKNKEKDKEKKID 126
SS L + + + KKKK K K I + E+D KK
Sbjct: 391 ASSAGLIGSSEKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKGK 450
Query: 127 KEKEKGKKEEKEKKEEKE---KKEEKEFKMKEDKEKPVEKIRKE 167
K ++KG+ + + + + KKE + + + P E + K+
Sbjct: 451 KNQKKGRDKSSKVPSDSKAGGKKESVKSQEDNNNIPPEEWVMKK 494
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 31.1 bits (71), Expect = 0.42
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
++ K+ KEK K +KK+++K + K + E+K + E EK +KE +E +
Sbjct: 4 EEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEA 63
Query: 142 EKEKKE 147
E ++E
Sbjct: 64 ELARRE 69
Score = 29.1 bits (66), Expect = 1.9
Identities = 20/82 (24%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 113 KIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM-KEDKEKPVEKIRKEEKDS 171
+ + ++ +K++DK K K + ++K+EEK+ + EK KM E+K + + ++E +
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 172 EKEKKSKDKDKKLKKEKLKKKK 193
+ + ++ + K K+ L +K
Sbjct: 61 LEAELARRELKAEAKKMLSEKG 82
Score = 27.6 bits (62), Expect = 6.6
Identities = 20/80 (25%), Positives = 38/80 (47%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
E ++EK ++ +++ K EK+++E+K K K EK E + EKE +
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 178 KDKDKKLKKEKLKKKKKEKE 197
+ + ++ K + KK E
Sbjct: 61 LEAELARRELKAEAKKMLSE 80
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 32.5 bits (74), Expect = 0.42
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
K+ + +I+ K ++ ++D EKG+ ++ K+ K E E + + +EKI K
Sbjct: 362 KEAQAEIEQKLAQEKAQLDAAVEKGELTPEQAKQIARAKLEPE------ERERLEKIDKA 415
Query: 168 EKDSEKEKKSKD 179
+ ++ + + D
Sbjct: 416 QAALKQAQSAFD 427
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 32.7 bits (74), Expect = 0.43
Identities = 15/48 (31%), Positives = 34/48 (70%)
Query: 105 KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
K KK ++ ++ +++ E+K +E+E+ K++EKE++ E+E++ E+ K
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 30.0 bits (67), Expect = 2.4
Identities = 18/57 (31%), Positives = 38/57 (66%), Gaps = 8/57 (14%)
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER------SSHE 202
K+ + +E+ VEK ++E + +E++ ++K+K +KE+ +++++E ER SSHE
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEK--EKEREREREREAERAAKASSSSHE 630
Score = 30.0 bits (67), Expect = 2.9
Identities = 13/45 (28%), Positives = 31/45 (68%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
KK +E ++K K + ++ + +E++KEK+ ++E+E+ ++ E+ K
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 29.7 bits (66), Expect = 3.9
Identities = 18/56 (32%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 123 KKIDKEKEKGKKE-EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
KK ++ EK K+E E++ +EE+E+++EKE + + ++E+ E+ K S + + S
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMS 634
Score = 29.3 bits (65), Expect = 4.9
Identities = 12/41 (29%), Positives = 30/41 (73%)
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
+K+EE +K ++E + K +E+ EK +++E++ E+E++++
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 32.4 bits (74), Expect = 0.44
Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 98 EKEKIKKKKDKK-DKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
E E+ +K + K K I K+ + + KE EE+ E E KE +E +
Sbjct: 35 EVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLE 94
Query: 157 KEK--PVEKIRKEEKDSEKEKKSKD 179
KE E + +++ ++ +
Sbjct: 95 KEINELEEWLNVLDEEKSFLDENLE 119
Score = 31.2 bits (71), Expect = 1.1
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 3/100 (3%)
Query: 120 DKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD 179
+ E+K+ K + K KK K+ K + K D E+ + + E K+ E+ +S +
Sbjct: 35 EVERKLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLE 94
Query: 180 KDKKLKKEK---LKKKKKEKERSSHEKEVIPKLTFKFGTD 216
K+ +E L ++K + + E + L F
Sbjct: 95 KEINELEEWLNVLDEEKSFLDENLEELSELSNLDIDFKYL 134
Score = 29.3 bits (66), Expect = 5.0
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
KK +K K D K +E+ +D E E + EE + EKE E +E+
Sbjct: 48 KKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEINELEEWLNVL 107
Query: 156 DKEKPVEKIRKEEKDSEKEKKSKDKD 181
D+EK E + E + D D
Sbjct: 108 DEEK---SFLDENLEELSELSNLDID 130
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; MTH326-like has inactivated
polymerase catalytic domain; alr1562 and slr7011 -
predicted only on the basis of size, presence of HD
domain, and location with RAMPs in one operon; signature
gene for type III; also known as Crm2 family.
Length = 475
Score = 32.4 bits (74), Expect = 0.44
Identities = 27/173 (15%), Positives = 63/173 (36%), Gaps = 8/173 (4%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE-FKMK 154
++E E++K++ +++ + I NK K+ I+ + K + ++ ++ E +
Sbjct: 90 EEEAEELKEEIEEETWESILNKVKEY-LDIENVEPFLLKSDALERISDRIEDGNEDREEA 148
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFG 214
E+ E + +R K + +K+ EK + K+ L K G
Sbjct: 149 EELEAARKNVRDFAPVPWIPPAPKIYIYIVSIFN-EKELSEKYKEFLLKKRNGLLLDKLG 207
Query: 215 TDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSKQVW-----ICPAC 262
++ + ++ + A + D K + +CP C
Sbjct: 208 GRARKEYRSVCGLLAAAWKLEKETEQYSLFAKDDLEEDLKLLLEAGERLCPLC 260
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 31.3 bits (71), Expect = 0.46
Identities = 20/72 (27%), Positives = 38/72 (52%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
E+ + + KK+ K K ++ + +E P + + + + +KK + DK+ KK+
Sbjct: 99 EQYRLMHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKKKKHEDDKERKKK 158
Query: 188 KLKKKKKEKERS 199
K +KKKK+K S
Sbjct: 159 KKEKKKKKKRHS 170
Score = 29.8 bits (67), Expect = 1.8
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
KKK K K KK + + + + + K +K+ +K KK E +K+ +K+KKE+K+ K +
Sbjct: 110 KKKHKHKHKKHRTQDPLPEETPSDSEGLKGHEKKHKK-KKHEDDKERKKKKKEKKKKKKR 168
Query: 155 EDKEKP 160
E P
Sbjct: 169 HSPEHP 174
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 32.3 bits (74), Expect = 0.48
Identities = 46/207 (22%), Positives = 72/207 (34%), Gaps = 23/207 (11%)
Query: 32 KTSPKEKMSSKEKTSPKEKEYSKVKDVELGV--TPMVPNIVKVTSSEDLGEIKKDKS--- 86
+ K + + V V G T V N+ + ED+ KDK
Sbjct: 370 NSHAKGASYGDNYEGDESDKIKVVAYVGGGKVETDSVWNLFREKFEEDI-ANYKDKEFYN 428
Query: 87 -------IKKDKKTHKKKEKEK-IKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
IK + K+ EK + K K+K I +EK + K +K KK
Sbjct: 429 CTEGGARIKGTIELPFKEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDF 488
Query: 139 KKE-EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
KE E + + +E K D K K EK S K K+ + K L++ +
Sbjct: 489 IKEFETDALKLQEILEKVDS-----KSEKLEKISAKIDNIKELFDESKMSILQEILQP-- 541
Query: 198 RSSHEKEVIPKLTFKFGTDMEEKTKRE 224
+ H E+ +K +E +
Sbjct: 542 -ALHHIELNIARIYKLNIKDKEDFLNK 567
Score = 32.3 bits (74), Expect = 0.53
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIK-KKKDKKDKDKIKNKEKDKEK------KIDKEKEKGK 133
K IK ++ +EK +K +K KK+ D IK E D K K+D + EK +
Sbjct: 455 DKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQEILEKVDSKSEKLE 514
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
K + KE +E + + ++ +P + + KDK+ L K +K
Sbjct: 515 KISAKIDNIKELFDESKMSILQEILQPALHHIELNIARIYKLNIKDKEDFLNKLYIK 571
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 32.1 bits (73), Expect = 0.49
Identities = 20/113 (17%), Positives = 34/113 (30%), Gaps = 13/113 (11%)
Query: 76 EDLGE---IKKDKSIKKDKKTHKKKEKE----------KIKKKKDKKDKDKIKNKEKDKE 122
+ L + K K + +++ K K KK K+ +
Sbjct: 6 DSLPDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNP 65
Query: 123 KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
KK K E +EK + K E + P + +EE+ E
Sbjct: 66 KKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPD 118
Score = 30.9 bits (70), Expect = 1.2
Identities = 20/110 (18%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKI----KNKEKDKEKKIDKEKEKGKK---EEKEKKEE 142
D+K KK K+ K +D + I E+ EK +K K + K+
Sbjct: 10 DEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQ-SEKAKPPKKPKEASRPGTPRNPKKS 68
Query: 143 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
+ E +E KP + K K + ++ ++ +
Sbjct: 69 SKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPD 118
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 32.4 bits (74), Expect = 0.49
Identities = 24/106 (22%), Positives = 47/106 (44%)
Query: 93 THKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
+ E K KK K KK K K + K+ D+++ + + G + +K+ +E+ E
Sbjct: 266 YYDVSEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEEENARLEDS 325
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
K+ KE+ + E+ D + +K + KK K + + +
Sbjct: 326 PKKRKEEQEDDDFVEDDDDLQASLAKQRRLAQKKRKKLRPEDIARQ 371
Score = 31.7 bits (72), Expect = 0.90
Identities = 31/151 (20%), Positives = 61/151 (40%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
KK+ +KK K + + +K K+ D+ +K K + G +++ +K+
Sbjct: 180 KKNLELKKKKPDYDPDDDDKFNKRSILSKYDEEIEGKKKKSDNLFTLDSGGSTDDEAEKK 239
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
+E K++ + + E + D + K K KK KK+K ++K +++
Sbjct: 240 RQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDEDELEP 299
Query: 202 EKEVIPKLTFKFGTDMEEKTKRESSPKIVIK 232
E E + D+EE+ R K
Sbjct: 300 EAEGLGSSDSGSRKDVEEENARLEDSPKKRK 330
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 32.4 bits (73), Expect = 0.50
Identities = 25/100 (25%), Positives = 55/100 (55%), Gaps = 11/100 (11%)
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDS------EKEKKSKDKDKKLKK 186
K + + EKE K +MK ++K +E++ +EE++ E+ ++ + + ++L++
Sbjct: 432 KDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLER 491
Query: 187 EKLKKKKKEKERSSH-EKEVIPKLTFKFGTDMEEKTKRES 225
E+L++ + E++R E+E + +L D EK +R S
Sbjct: 492 ERLERDRLERDRLDRLERERVDRLE----RDRLEKARRNS 527
Score = 29.7 bits (66), Expect = 3.8
Identities = 24/92 (26%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKK-EEKEKKEEKEFKMKEDKEKP-VEKIRKEEKDSEKEK 175
+KD ++ EKE ++ E K EK++ E E + +E E+ +E+I +E + E+ +
Sbjct: 431 DKDHAERARIEKENAHRKALEMKILEKKRIERLEREERERLERERMERIERERLERERLE 490
Query: 176 KSKDKDKKLKKEKLKKKKKEK----ERSSHEK 203
+ + + +L++++L + ++E+ ER EK
Sbjct: 491 RERLERDRLERDRLDRLERERVDRLERDRLEK 522
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 31.4 bits (72), Expect = 0.50
Identities = 15/78 (19%), Positives = 45/78 (57%)
Query: 111 KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
+K+K + + +K++++ K++ + + + ++ K+ +EE E + + +E + ++
Sbjct: 64 LNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLK 123
Query: 171 SEKEKKSKDKDKKLKKEK 188
+E EK K+ ++++K K
Sbjct: 124 AELEKYEKNDPERIEKLK 141
>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
Length = 312
Score = 31.9 bits (73), Expect = 0.51
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL--KKEKLKKKKKEK 196
KE + ++ + K K+K E +SEK +K K K L KK+KL+K +EK
Sbjct: 109 GKESRIKR-YDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEKTNEEK 164
Score = 29.2 bits (66), Expect = 3.6
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEK 169
+++ K + KI K+KE+ + EK +K +++ + E K+K +EK +E+
Sbjct: 111 ESRIKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEKTNEEKS 165
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 31.5 bits (72), Expect = 0.51
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 159
E K K E+ EE E +++E E + KE K+K
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKK 195
Score = 31.1 bits (71), Expect = 0.63
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
K E+ +E E ++E+ E EKKE K+ K
Sbjct: 162 AKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 31.1 bits (71), Expect = 0.70
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 106 KDKKDKDKI--KNKEKDKEKKIDKEKEKGKKEEKEKK 140
KD K ++ + E K ++ E KKE K+KK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 30.0 bits (68), Expect = 1.4
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 156 DKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
K +E+ EE ++ K ++ + KKE KKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 31.4 bits (72), Expect = 0.53
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKI-DKEKEKGKKEEKEKKEEK 143
K KK KK +K+ K+ K D D+ K +E EK D+E + ++ E E+K
Sbjct: 15 KKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKAIV 74
Score = 28.0 bits (63), Expect = 5.9
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
DKK KK +KEK K++K + + D E K E+ K +K E++++ ++++ E
Sbjct: 13 DKKKAKKAKKEKRKQRKQARKG----ADDGDDELKQAAEEAKAEKAERDRELNRQRQAEA 68
Query: 150 EFK 152
E K
Sbjct: 69 EQK 71
>gnl|CDD|240416 PTZ00432, PTZ00432, falcilysin; Provisional.
Length = 1119
Score = 32.5 bits (74), Expect = 0.53
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 20/123 (16%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
E + K +KE K K+E +++ KE+ + +M++ EK K+E++++ + +
Sbjct: 572 EAVESSKYEKEFNKLVKDELKERLSHLTKEQVD-EMEKAYEK-----FKKEREADDDPEH 625
Query: 178 KDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKT----KRESSPKIVIKP 233
D L L K E E IP +K +D ++ S +++ P
Sbjct: 626 LDSFPILSLSDLNK----------ETEEIPTKLYKLSSDSLKENMDLDSDGGSVTVLVHP 675
Query: 234 VKS 236
++S
Sbjct: 676 IES 678
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 30.8 bits (70), Expect = 0.56
Identities = 22/69 (31%), Positives = 45/69 (65%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
+D+ ++ ++ K+K++EK KK+ K+ K K K K+K K KK +K++EK + E+
Sbjct: 63 TEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESS 122
Query: 142 EKEKKEEKE 150
++E++ E++
Sbjct: 123 DEEEEGEED 131
Score = 29.6 bits (67), Expect = 1.5
Identities = 24/71 (33%), Positives = 45/71 (63%)
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
++ K++ E++E ++++E K ++D+EK +K K +K +K+KK K K KKE+ + K
Sbjct: 57 EKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSK 116
Query: 194 KEKERSSHEKE 204
+E S E+E
Sbjct: 117 SSEESSDEEEE 127
Score = 29.2 bits (66), Expect = 1.8
Identities = 21/73 (28%), Positives = 44/73 (60%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ +++K K ++KT KK+ K + KK+K KK K K +K++++ +E +EE+ +
Sbjct: 70 QKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGE 129
Query: 140 KEEKEKKEEKEFK 152
++++E+ E K
Sbjct: 130 EDKQEEPVEIMEK 142
Score = 28.1 bits (63), Expect = 4.2
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 82 KKDKSIKKDKKTHKKKE--KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+K K +D++ +K+E K K ++K KK + K K+K K+KK K+ K +++E K
Sbjct: 57 EKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSK 116
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEK 163
E+ EE+E + + +E
Sbjct: 117 SSEESSDEEEEGEEDKQEEPVEIM 140
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 31.6 bits (72), Expect = 0.58
Identities = 27/109 (24%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
++++K + + + +E ++ +++K+K +K++K KE K +
Sbjct: 131 EEEQKSFDPAEYFDTTPELLDRRENRPRISQLEKTSLVDEKQKKKSAKKKRKLYKELKER 190
Query: 155 EDKEKPVEKIRKE-EKDSEKEKKSKDKDKKLKKEK----LKKKKKEKER 198
+++EK ++K+ + E E KK K K KK+ K+K + K KKE++R
Sbjct: 191 KEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
>gnl|CDD|237796 PRK14712, PRK14712, conjugal transfer nickase/helicase TraI;
Provisional.
Length = 1623
Score = 32.1 bits (72), Expect = 0.59
Identities = 14/102 (13%), Positives = 58/102 (56%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
+++ +E I+++ +++ + ++ ++K D + E+ +E ++ ++ E+E +
Sbjct: 1517 QRQAEEAIRRETERRADEIVRKMAENKPDLPDGKTEQAVREIAGQERDRAAITEREAALP 1576
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
E + +++R+ ++ +E +++ ++++++ ++ +KEK
Sbjct: 1577 ESVLREPQRVREAVREVARENLLQERLQQMERDMVRDLQKEK 1618
>gnl|CDD|235570 PRK05703, flhF, flagellar biosynthesis regulator FlhF; Validated.
Length = 424
Score = 31.8 bits (73), Expect = 0.59
Identities = 16/89 (17%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
+ + K+K + I + +K + +D + + K+E EK
Sbjct: 54 DETPKKNPVLREEKRKPAKSILSLQALLEKRPSRTNSQDALLQ-AENALPEWKKELEKPS 112
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
E +++E K + +K ++++R E K+
Sbjct: 113 EPKEEEPKAAAESKVVQKELDELRDELKE 141
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 31.8 bits (72), Expect = 0.60
Identities = 21/105 (20%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
+ EKE+ K K + +N E + +D E ++ KKEE+ +E E+ E+++
Sbjct: 35 DSELRDAEKER-DTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELEKED 93
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK-KLKKEKLKKKKK 194
+ + + E+ KE+ ++E+ + ++ + +L+ +
Sbjct: 94 DDLDGELVELQEE--KEQLENEELQYLREYNLFDRNNLQLEDNLQ 136
Score = 31.0 bits (70), Expect = 1.2
Identities = 14/86 (16%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
+ D++K +E+ ++++ +++ + E E +E+KE+ E + + +
Sbjct: 70 SELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLE-NEELQYLREYNLFDRNN 128
Query: 169 KDSEKEKKSKDKDKKLKKEKLKKKKK 194
E +S + + +L K +K
Sbjct: 129 LQLEDNLQSLELQYEYSLNQLDKLRK 154
Score = 27.9 bits (62), Expect = 9.3
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
KE+D K+ + E E E E E K +E+ R ++ E EK+
Sbjct: 43 KERDTYKQYLSKLESQNVEISNY--EALDSELDELKKEEE--------RLLDELEELEKE 92
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSHEKE 204
D D +L + + +K++ E E + +E
Sbjct: 93 DDDLDGELVELQEEKEQLENEELQYLRE 120
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 31.6 bits (72), Expect = 0.60
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
+++++++ ++EK K + K KK K K EEKE +E +EK + EE E E
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLR--ELEEDTPEDELAE 95
Query: 178 KDKDKKLKKE 187
K + +KL++E
Sbjct: 96 KLRLRKLQEE 105
Score = 30.8 bits (70), Expect = 1.1
Identities = 19/78 (24%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKG--- 132
++ ++K ++D++ ++K K K K K K KI+ KEK K +K +K +
Sbjct: 28 DEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEED 87
Query: 133 KKEEKEKKEEKEKKEEKE 150
E++ ++ + +K ++E
Sbjct: 88 TPEDELAEKLRLRKLQEE 105
Score = 28.5 bits (64), Expect = 5.5
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK--EKLKKK 192
E++EK+EEK K K K K K EK + + + EK + ++D + EKL+ +
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLR 100
Query: 193 KKEKE 197
K ++E
Sbjct: 101 KLQEE 105
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 31.9 bits (72), Expect = 0.61
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 103 KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE-KEFKMKED----- 156
+KK + + E K + + +K E E EE E + ED
Sbjct: 49 RKKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEISEPLEEGSELVVNEDAALDK 108
Query: 157 --KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 205
K+ P RK S ++ K + K K+ K+KK ++ E E EV
Sbjct: 109 ESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEV 159
Score = 31.6 bits (71), Expect = 0.98
Identities = 26/145 (17%), Positives = 56/145 (38%), Gaps = 14/145 (9%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
K S + + D++ KK + K KK + ++ + + E
Sbjct: 50 KKIESALAVDEEPDENGAVSKKKPTRSVKRATKKTVVEIS-----EPLEEGSELVVNEDA 104
Query: 131 KGKKEEKEKKEEKEKK--------EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
KE K+ +K EE++ + K K + V+K+ ++ +D E + D ++
Sbjct: 105 ALDKESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEE 164
Query: 183 KLKKEKLK-KKKKEKERSSHEKEVI 206
L+ + ++E + + E I
Sbjct: 165 SEFVTSLENESEEELDLEKDDGEDI 189
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 31.5 bits (72), Expect = 0.66
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 89 KDKKTHKKKEKEKIKKKKDK-KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
K+ KE E + K K +D+ +E + K+++ E E E ++ +EK KK
Sbjct: 157 KEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKL 216
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIP 207
+E +K K + +E+ +E +S+ E + K +L E + +KK ++ + I
Sbjct: 217 LQEIMIKVKKLEELEE-ELQELESKIEDLTNKKS-ELNTEIAEAEKKLEQCRGFTFKEIE 274
Query: 208 KLTFKF 213
KL +
Sbjct: 275 KLKEQL 280
>gnl|CDD|227881 COG5594, COG5594, Uncharacterized integral membrane protein
[Function unknown].
Length = 827
Score = 32.0 bits (73), Expect = 0.67
Identities = 31/134 (23%), Positives = 45/134 (33%), Gaps = 24/134 (17%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
+ K+ K KK EK + K K K K K+ +K+E E E
Sbjct: 251 QELYKERDKILKKLEKA--LNELLNKLLKKSHLKTNKKSGKLT----PSRKKEFEILPEY 304
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEE-----KDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
DK++P +I+K K + K KL E +K E
Sbjct: 305 ----------VPDKKRPKHRIKKLNKGIFGKKVDAIDYYSAKLTKLDAEIENARKSLYEN 354
Query: 199 SSHEKEVIPKLTFK 212
+ + I TFK
Sbjct: 355 TPTKSGFI---TFK 365
>gnl|CDD|233119 TIGR00763, lon, ATP-dependent protease La. This protein is induced
by heat shock and other stresses in E. coli, B.
subtilis, and other species. The yeast member,
designated PIM1, is located in the mitochondrial matrix,
required for mitochondrial function, and also induced by
heat shock [Protein fate, Degradation of proteins,
peptides, and glycopeptides].
Length = 775
Score = 31.9 bits (73), Expect = 0.67
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 120 DKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEK---IRKEEKDSEKEKK 176
KE ++ K + K K+ +EK E K ++E+ ++E + K ++K I K++KD ++ K
Sbjct: 199 KKELELLKLQNKITKKVEEKME----KTQREYYLRE-QLKAIKKELGIEKDDKDELEKLK 253
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSH 201
K ++ KL +E K +KE + S
Sbjct: 254 EKLEELKLPEEVKKVIEKELTKLSL 278
Score = 30.3 bits (69), Expect = 2.0
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID 126
E L IKK+ I+KD K +K KEK+++ K ++ K+ KE K ++
Sbjct: 230 EQLKAIKKELGIEKDDKDELEKLKEKLEELKLPEEVKKVIEKELTKLSLLE 280
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 31.3 bits (71), Expect = 0.67
Identities = 23/76 (30%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKD--KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
+ +KK KK K K+K ++++ I K EKK+ + + + EE EK EE
Sbjct: 118 SVMGINKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEE 177
Query: 143 KEKKEEKEFKMKEDKE 158
+E++EE+E + +D +
Sbjct: 178 EEEEEEEEDEDFDDDD 193
Score = 30.5 bits (69), Expect = 1.1
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK----IDKEKEKGKKEEKEKKEEK 143
K KK K K K+ ++++ K +K+ K D ++E K EE+E++EE+
Sbjct: 125 KAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEE 184
Query: 144 EKKEEKEFKMKED 156
E ++ + +D
Sbjct: 185 EDEDFDDDDDDDD 197
Score = 29.0 bits (65), Expect = 4.4
Identities = 18/67 (26%), Positives = 40/67 (59%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
NK+ K+ + K K K +E+++ EK E K+KE + + V++ +++++ E+E
Sbjct: 122 INKKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEE 181
Query: 175 KKSKDKD 181
++ +D+D
Sbjct: 182 EEEEDED 188
Score = 27.8 bits (62), Expect = 8.1
Identities = 17/72 (23%), Positives = 34/72 (47%)
Query: 103 KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVE 162
KK K K K K ++ + EK EK+ KE + + ++E + E++E+ E
Sbjct: 124 KKAGKKLALSKFKRKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEE 183
Query: 163 KIRKEEKDSEKE 174
+ ++ D + +
Sbjct: 184 EEDEDFDDDDDD 195
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 31.1 bits (71), Expect = 0.67
Identities = 14/60 (23%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 133 KKEEKEKKEEKE-KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
+K EK +K EKE +K +E K + +K K +++ + K++ + +K
Sbjct: 40 RKMEKYQKREKEIQKRAREL-RKNGDKLSPKKFEKRQEE------LMEDQKEMMMDMMKP 92
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 31.8 bits (73), Expect = 0.70
Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 24/111 (21%)
Query: 99 KEKIKKKKDKKDKD----------------KIKNKEKD---KEKKIDKEKEKGKKEEKEK 139
E KKKK K+K+ KI + + KEK E G ++ +
Sbjct: 261 NEYAKKKKKLKEKNIKGEDVREGLTAFISVKIPEPQFEGQTKEKLGTSEVRFGVEKIVSE 320
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
+E + K VEK+ K KK+++ +K K +
Sbjct: 321 CLLSFLEENPV-----EASKIVEKVLLAAKARAAAKKARELTRKKKLSSIS 366
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 31.6 bits (72), Expect = 0.71
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
+ D I +E+ EK+I+K KEK K + K E++KKE ++ KEK + R+
Sbjct: 335 GEPDGISLREE-LEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGL 393
Query: 169 KD 170
++
Sbjct: 394 QN 395
Score = 30.1 bits (68), Expect = 2.5
Identities = 15/52 (28%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
++E+ EK +EK++++ K ++DKK + + ++KKKEK+ S +
Sbjct: 341 SLREELEKRIEKLKEKPPKPPT-KAKPERDKKERPGRYRRKKKEKKAKSERR 391
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 32.0 bits (73), Expect = 0.71
Identities = 20/95 (21%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 123 KKIDKEKEK-----GKKEEKEKKEEKEKKEEKEFKMK-------EDKEKPVEKIRKEEKD 170
+++KE ++ G+K E ++ K+ E E + +D K +++ +E +
Sbjct: 133 DELEKEADELWKPRGRKPEINVALKELKELEAEIREVQLKTRTWKDLVKALDEAEEELAN 192
Query: 171 SEKEKKSKDKDKKLKKEKLKKKKKE-KERSSHEKE 204
KE + +K+ K + E+L++ ER + E++
Sbjct: 193 LRKELRQLEKE-KQRLERLRRLLPLLAERKALEQQ 226
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 31.6 bits (71), Expect = 0.72
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 116 NKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE---KDSE 172
+ E D E + K ++E +KEE+E ++ +E + E+ E E+ +E KD E
Sbjct: 83 DNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDE 142
Query: 173 KEKKSKDKDKKLKKE 187
KE ++ + +L E
Sbjct: 143 KESDAEGDENELAGE 157
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 31.6 bits (72), Expect = 0.75
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
KK H K KK KK K K+ +K+ +K K+++ K +K ++ E+ +K+ K
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 28.5 bits (64), Expect = 5.9
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 16/105 (15%)
Query: 92 KTHKKKEKEKIKKKKDKKDKDKIKNKE-KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
K K+++ +K KK+ K K + +D KK + K+KK++K+K K+
Sbjct: 210 KQLKEEDPDKYKKQFSKYIKAGVGPDSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKK 269
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK-KEKLKKKKK 194
+K K K + K++K++ K KK + +E+L+KK K
Sbjct: 270 YKTK--------------KLTGKQRKARVKAKKAQRRERLQKKIK 300
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 30.5 bits (69), Expect = 0.76
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
E EK +KE ++ EEKE + K+ K ++ ++K EK+ K++ + +K KK +
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTK 153
Query: 188 KLKKK 192
K + K
Sbjct: 154 KEEGK 158
Score = 29.3 bits (66), Expect = 2.0
Identities = 17/62 (27%), Positives = 34/62 (54%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
+++ KE + E+++ K +KEKKE+KEKK ++ K+ + +K K + +K+
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 177 SK 178
Sbjct: 156 EG 157
Score = 28.2 bits (63), Expect = 5.0
Identities = 16/63 (25%), Positives = 36/63 (57%)
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
++E+++ ++ +++E KE KEK +K+ ++ + K +K+ KK K+ KK+
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKKE 155
Query: 194 KEK 196
+ K
Sbjct: 156 EGK 158
Score = 27.8 bits (62), Expect = 6.9
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 87 IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
+K++K K+ +EK K K+ K+K + K +K K K +K K+ KK
Sbjct: 95 SEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTKK 154
Query: 147 EEKE 150
EE +
Sbjct: 155 EEGK 158
Score = 27.8 bits (62), Expect = 7.8
Identities = 16/65 (24%), Positives = 35/65 (53%)
Query: 107 DKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK 166
+ + + K +KE ++++ I +KEK +K+EK+ E+ KK+ + K+ + K
Sbjct: 94 ESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTTK 153
Query: 167 EEKDS 171
+E+
Sbjct: 154 KEEGK 158
Score = 27.8 bits (62), Expect = 7.8
Identities = 16/67 (23%), Positives = 35/67 (52%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
+ E ++ + K+ ++ K K++ K+KK+KK +K+ K+ K K +K K
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTT 151
Query: 136 EKEKKEE 142
K+++ +
Sbjct: 152 TKKEEGK 158
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 31.8 bits (73), Expect = 0.76
Identities = 8/41 (19%), Positives = 19/41 (46%)
Query: 112 DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
+K++ + + ++KEK+E E+ +E +F
Sbjct: 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFD 181
>gnl|CDD|227708 COG5421, COG5421, Transposase [DNA replication, recombination, and
repair].
Length = 480
Score = 31.6 bits (72), Expect = 0.78
Identities = 24/120 (20%), Positives = 45/120 (37%), Gaps = 7/120 (5%)
Query: 70 VKVTSSEDLGEIKKDKSIKKDKKT------HKKKEKEKIKKKKDKKDKDKIKNKE-KDKE 122
V T +E + D +K K K + + K++ KE +
Sbjct: 228 VPATIAEAKELLHADLYLKTLKSDERGSPYGTKVVYGGVGQLWVFLLSYKLQKKEEQTLR 287
Query: 123 KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
+I+KE EK +K ++ K + E+ E K + E D + +KK ++ +
Sbjct: 288 TRIEKELEKAEKSLEKLKGREFNCEKDARIAAEKILKDYSSVEFLEVDFKSKKKREEAKR 347
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 31.2 bits (71), Expect = 0.79
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
K+K+K KKKK KK+ + E + E G + E K+ K+K+ K
Sbjct: 182 KKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDNEK 239
Score = 30.4 bits (69), Expect = 1.4
Identities = 15/68 (22%), Positives = 25/68 (36%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
+ E+E+ KKKK KK K KN + + + E K+ K+ +
Sbjct: 174 ARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSI 233
Query: 155 EDKEKPVE 162
+ E
Sbjct: 234 APDNEKSE 241
>gnl|CDD|227545 COG5220, TFB3, Cdk activating kinase (CAK)/RNA polymerase II
transcription initiation/nucleotide excision repair
factor TFIIH, subunit TFB3 [Cell division and chromosome
partitioning / Transcription / DNA replication,
recombination, and repair].
Length = 314
Score = 31.5 bits (71), Expect = 0.80
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 5/117 (4%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID--KEKEKGKKEEKEKKEEKEK 145
+ + +EK+KK ++ ++D I N + ++ K+K +K K KK + E+
Sbjct: 119 ELLELIDVSLTEEKVKKY-EEMNQDSILNNLERPTPEVMPGKQKNVLQKRMKLKKRQLER 177
Query: 146 KEEKEFKMKED--KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
+ E+E +M ++ K++ ++ +D K K K E+L + E R++
Sbjct: 178 QIEEEERMNKEWTKKEIGNRLGTASEDGNKTIKIGIISDKFDPEELPRIVVEPTRNN 234
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 31.8 bits (73), Expect = 0.81
Identities = 14/107 (13%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
K +I+ + +K K + + K + + ++ E+EK +E + KK + + + + +
Sbjct: 434 AKAEIRAIEQEKKKAE-EAKARFEARQARLEREKAAREARHKKAAEARAAKDKDAVAAAL 492
Query: 158 EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ K + + ++ + + + +K + + R + ++
Sbjct: 493 ARVKAKKAAATQPIVIKAGARPDNSAVIAAREARKAQARARQAEKQA 539
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 30.8 bits (70), Expect = 0.85
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
E K+ K+++EF +E KE +K + E K K
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKK 195
Score = 29.3 bits (66), Expect = 3.0
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
K+ K+K E+ EE+ +K K E KKK
Sbjct: 160 KDAKQK--EEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|216187 pfam00913, Trypan_glycop, Trypanosome variant surface glycoprotein
(A-type). The trypanosome parasite expresses these
proteins to evade the immune response. This family
includes a variety of surface proteins such as
Trypanosoma brucei VSGs such as expression site
associated gene (ESAG) 6 and 7.
Length = 370
Score = 31.3 bits (71), Expect = 0.88
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 71 KVTSSEDLGEIKK--DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKE 128
T+ + E+K+ + + K T + EKIKK D +KIK +KID E
Sbjct: 279 DTTTLKASTELKEALKRLLLNKKDTDDEDAAEKIKKLFGDDDAEKIKK----LWEKIDNE 334
Query: 129 KEKGKKEEKEKKEEKEK 145
+ K KK + +
Sbjct: 335 QIPKKIAGTTKKTKLGE 351
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 30.9 bits (70), Expect = 0.89
Identities = 23/108 (21%), Positives = 52/108 (48%), Gaps = 7/108 (6%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE------EK 149
++++++ + ++ ++ + KN K + D +K K+E+K + KE+KE +
Sbjct: 109 REQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKREQK-ARAAKERKERLVAEARE 167
Query: 150 EFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
F D P + ++K+ E++KK K+ ++ K+EK
Sbjct: 168 HFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKRREKEEKRMAALVAAA 215
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 30.9 bits (70), Expect = 0.91
Identities = 15/82 (18%), Positives = 30/82 (36%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
+++ K + + + ++ EKK K K K K + K K + K + + K+ K
Sbjct: 64 EEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSK 123
Query: 155 EDKEKPVEKIRKEEKDSEKEKK 176
+ P + S
Sbjct: 124 TAAKAPAAPNQPARPPSAASAS 145
Score = 29.4 bits (66), Expect = 2.8
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKE--DKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 185
E E +++ K E + E K KE EK +K + + K K K K K
Sbjct: 59 EPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKP---KVKPQP 115
Query: 186 KEKLKKKKKEKERSS 200
K K K + +
Sbjct: 116 KPKKPPSKTAAKAPA 130
Score = 28.6 bits (64), Expect = 5.0
Identities = 31/128 (24%), Positives = 47/128 (36%), Gaps = 14/128 (10%)
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
K + EE + + E +E + P E E K K+ +KK KK
Sbjct: 40 AVFLLAAKVLEAPTEEPQPEPEPP---EEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKK 96
Query: 187 EKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAAD 246
K K K K K + + + PK +K +++ K P + PP A+A
Sbjct: 97 PKPKPKPKPKPKP--KVKPQPK---------PKKPPSKTAAKAPAAPNQPARPPSAASAS 145
Query: 247 EYDTGDSK 254
TG S
Sbjct: 146 GAATGPSA 153
Score = 28.6 bits (64), Expect = 5.4
Identities = 13/80 (16%), Positives = 32/80 (40%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
K + +E + + +++ K + + + + ++ K EK+ K+ K K + K
Sbjct: 46 AKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKP 105
Query: 151 FKMKEDKEKPVEKIRKEEKD 170
+ K +P K +
Sbjct: 106 KPKPKVKPQPKPKKPPSKTA 125
Score = 28.6 bits (64), Expect = 5.5
Identities = 11/70 (15%), Positives = 29/70 (41%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
+++ K + + + + KE+ + +++ + + K KP K + + + K+
Sbjct: 60 PEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKK 119
Query: 175 KKSKDKDKKL 184
SK K
Sbjct: 120 PPSKTAAKAP 129
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 31.7 bits (71), Expect = 0.91
Identities = 26/116 (22%), Positives = 48/116 (41%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
E E K + +K K +E+ + +K + K+ + + K++KE +K K K
Sbjct: 423 ESESDDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAI 482
Query: 158 EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKF 213
E+ + E ++ + D K LK +K +K R +K + F F
Sbjct: 483 ERTAASKEELELIKADDEDDEQLDHFDMKSILKAEKFKKNRKLKKKASNLEEGFVF 538
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 30.5 bits (69), Expect = 0.93
Identities = 23/118 (19%), Positives = 52/118 (44%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
K+I K T K+ + K++ K K + ++ + +KK+ E+ K E + +
Sbjct: 41 KTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITAENEIKSI 100
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
+ +++K +++ + +E + K + D+ K+ KL K K K+ +
Sbjct: 101 QDLLQDYKKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 31.6 bits (71), Expect = 0.97
Identities = 29/114 (25%), Positives = 53/114 (46%), Gaps = 20/114 (17%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
EI+ + K + E + + ++K +IK +I KE+ K +EEKE+
Sbjct: 984 EIESKLPLDKRSIAVVSRRIE-LPVPPECREKHEIK-------DRIVKERIK-DQEEKER 1034
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
E ++ +E+E KE +E++ K D K++ K++LKKK+
Sbjct: 1035 MESLQRAKEEEIGKKE-----------KEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 29.7 bits (66), Expect = 3.2
Identities = 38/187 (20%), Positives = 78/187 (41%), Gaps = 11/187 (5%)
Query: 26 KVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDK 85
K+ + SP+E + + S K E V E V + + S + ++ + +
Sbjct: 503 KIFYDESLSPEECIEEYKGESAKSSESDLVVQDEPEDFFDVSKVANESISSNHEKLMESE 562
Query: 86 SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK 145
+ KK + + K + KD + + +E+ I ++ EKG E+ E +E
Sbjct: 563 FEELKKKW------SSLAQLKSRFQKDATLDSIEGEEELI-QDDEKGNFEDLEDEENSSD 615
Query: 146 KEEKEFK----MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
E +E + E++E E + E++ KK + + +E+ +KK+ + +
Sbjct: 616 NEMEESRGSSVTAENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTE 675
Query: 202 EKEVIPK 208
EK I +
Sbjct: 676 EKRKIEE 682
Score = 29.7 bits (66), Expect = 3.2
Identities = 18/81 (22%), Positives = 37/81 (45%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
+E + + +DK E E +E+ E K + KE+ ++ KE +S + K
Sbjct: 983 REIESKLPLDKRSIAVVSRRIELPVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAK 1042
Query: 177 SKDKDKKLKKEKLKKKKKEKE 197
++ KK K+ + + +K +
Sbjct: 1043 EEEIGKKEKEREQRIRKTIHD 1063
>gnl|CDD|220410 pfam09798, LCD1, DNA damage checkpoint protein. This is a family
of proteins which regulate checkpoint kinases. In
Schizosaccharomyces pombe this protein is called Rad26
and in Saccharomyces cerevisiae it is called LCD1.
Length = 648
Score = 31.3 bits (71), Expect = 0.99
Identities = 13/73 (17%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK-LKKEKLKKKKK 194
+++K+EE+ K++ + ++KE ++ ++K+++E + E E+K +++ L L+ +
Sbjct: 10 QQQKQEERNKQKSRVNELKEKHDQELQKLKQELQSLEDERKFLVLEQRGLSANDLRTELS 69
Query: 195 EKERSSHEKEVIP 207
+
Sbjct: 70 PPSNLLKTSDASH 82
>gnl|CDD|236272 PRK08475, PRK08475, F0F1 ATP synthase subunit B; Validated.
Length = 167
Score = 30.4 bits (69), Expect = 0.99
Identities = 29/96 (30%), Positives = 47/96 (48%)
Query: 111 KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
+KN K + KI K E+ +++ KE KE+KE +K + KE E VE +KE
Sbjct: 44 AKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYI 103
Query: 171 SEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 206
++ + + KD K ++ E E E+EV+
Sbjct: 104 LTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVV 139
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 30.3 bits (69), Expect = 0.99
Identities = 18/118 (15%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
++ + + +K++ + + ++++++ + ++ + I+ +K+ E+ ++ K + ++E +
Sbjct: 45 DLAEAERLKEEAQALLAEYEQELEEAR-EQASEIIEQAKKEAEQIAEEIKAEAEEELERI 103
Query: 140 KEEKEKKEEKEFK---------MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
KE E + E E + + E EK+ ++ D +K D E
Sbjct: 104 KEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGKKVDEAAQKDLIDAFIAELGEN 161
Score = 27.3 bits (61), Expect = 9.1
Identities = 22/123 (17%), Positives = 57/123 (46%), Gaps = 14/123 (11%)
Query: 85 KSIKKDKKTHKKKEKEKIKK-KKDKKDKDKIKNKEKDK----EKKIDKEKEKGKKEEKEK 139
K I K + K + + + ++ K++ + + + + ++ + E+ KKE ++
Sbjct: 29 KPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQI 88
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD-------KKLKKEKLKKK 192
EE + + E+E + KE +I E++ + +E +++ + K L K+ +
Sbjct: 89 AEEIKAEAEEELERI--KEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGKKVDEAA 146
Query: 193 KKE 195
+K+
Sbjct: 147 QKD 149
>gnl|CDD|233034 TIGR00584, mug, mismatch-specific thymine-DNA glycosylate (mug).
All proteins in this family for whcih functions are
known are G-T or G-U mismatch glycosylases that function
in base excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University). Used 2pf model [DNA metabolism,
DNA replication, recombination, and repair].
Length = 328
Score = 31.2 bits (70), Expect = 1.0
Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 3/92 (3%)
Query: 67 PNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID 126
PN+ V E+ + ++ + K K K + + + + K + K K
Sbjct: 29 PNMALVEEQEETSGVPAKAPTQEPSEEAPKFRKRKPRSNEPYRPVEPKKPSDSKKSGKST 88
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKE 158
K KE K+EK + K K++ F + E
Sbjct: 89 KSKE---KQEKITDKFKVKRKVDRFNGVSEAE 117
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 31.1 bits (70), Expect = 1.0
Identities = 28/122 (22%), Positives = 53/122 (43%), Gaps = 1/122 (0%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
+K + T + E+EK K K K K K+K+ E+ +++ K + +
Sbjct: 77 QKREGTEEVTEEEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAK 136
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK-KEKLKKKKKEKERSSHEKEVI 206
K + + K + E++ +EE++++KEK K K K+K E +EV
Sbjct: 137 AKAAALAKQKREGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVT 196
Query: 207 PK 208
+
Sbjct: 197 EE 198
Score = 28.4 bits (63), Expect = 8.9
Identities = 35/178 (19%), Positives = 74/178 (41%), Gaps = 11/178 (6%)
Query: 21 SKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGE 80
SK++++ K+K PK + E+ + +K K L K +E++ E
Sbjct: 35 SKLEEENREKEKALPKNDDMTIEEAKRRAAAAAKAKAAALAKQ-------KREGTEEVTE 87
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKK----DKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
+K K+ K K K K+K+ + +++K K K K K++
Sbjct: 88 EEKAKAKAKAAAAAKAKAAALAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKR 147
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
+ +E E++EE + + + K K + +K ++ + +++ +E+ K K
Sbjct: 148 EGTEEVTEEEEETDKEKAKAKAAAAAKAKAAALAKQKAAEAGEGTEEVTEEEKAKAKA 205
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 31.2 bits (70), Expect = 1.0
Identities = 30/132 (22%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKN-----KEKDKEKKIDKEKE 130
E L E D ++D+K + + + + + K +D ++K K++D K KE+E
Sbjct: 180 EPLDEDYPDDMEERDRKRYSEAKNREKRAKLKNQDNARLKRLVQIAKKRDPRIKSFKEQE 239
Query: 131 KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
K K+ ++ + E + + +K K + K E + K K K++ K+ LK
Sbjct: 240 KEMKKIRKWEREAGARLKALAALKG-KAEAKNKAEIEAEALASATAVKKKAKEVMKKALK 298
Query: 191 KKKKEKERSSHE 202
+KK + ++ +
Sbjct: 299 MEKKAIKNAAKD 310
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 31.1 bits (71), Expect = 1.0
Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 20/128 (15%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKK-EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK 166
K++ +++ + K+ E++++K K+ KK +K + + +K E+ K+ E KEK E++ +
Sbjct: 333 KEELKELEEELKELEEELEKIKKLLKKLPKKARGQLPPEKREQLEKLLETKEKLSEELEE 392
Query: 167 EEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH---EKEVIPKLTFKFGTDMEEKTKR 223
E+ + ++LK++ + K + P + G + + KR
Sbjct: 393 LEE---------------ELKELKEELESLYSEGKISVNKTIYPGVKIHIGNKV-LRIKR 436
Query: 224 ESSPKIVI 231
E P +
Sbjct: 437 EIGPCTFV 444
Score = 29.9 bits (68), Expect = 2.5
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 6/106 (5%)
Query: 54 KVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDK 113
+VK ELG ++V D E+K++ +++ ++E EKIKK K K
Sbjct: 307 EVKAKELGSPAGTKTEIEVGV--DFPELKEELKELEEELKELEEELEKIKKLLKKLPKKA 364
Query: 114 IKNKEKDKEKKIDK---EKEKGKKEEKEKKEEKEK-KEEKEFKMKE 155
+K ++++K KEK +E +E +EE ++ KEE E E
Sbjct: 365 RGQLPPEKREQLEKLLETKEKLSEELEELEEELKELKEELESLYSE 410
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 31.1 bits (70), Expect = 1.1
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
KKE+KE E + EK KM+E K E + K E ++ + + K+ K + K
Sbjct: 22 KKEDKESGLR-EMRVEKFSKMEE---KENEFLSKPEYNTHVKSPEQIKELSNKISGVSGK 77
Query: 193 KKEKER 198
+ +
Sbjct: 78 GESDKF 83
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 31.1 bits (71), Expect = 1.2
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 100 EKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK-KEEKEKKEEKEFKMKEDKE 158
+++++K +K +KD K +EK ++ K+K K + E++ EK E KE K E
Sbjct: 245 DELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAKYGNE 304
Query: 159 KPV 161
P+
Sbjct: 305 VPL 307
Score = 28.8 bits (65), Expect = 6.1
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
K+ +++ EK++K K ++ KN K+ K+ + +++ EK E KE +
Sbjct: 241 KEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKELIAK 300
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 31.1 bits (71), Expect = 1.2
Identities = 16/99 (16%), Positives = 33/99 (33%), Gaps = 1/99 (1%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
++ K D+K + K + N + + +K KEKE + E K
Sbjct: 725 RRGKITVTDEKCPECGLPLLRVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGV 784
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 180
+ E+ + E + ++ + S D+
Sbjct: 785 GAKTAEKLKDAGVETVTDLTAA-DPDAVAAKVDGVSADR 822
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 30.9 bits (71), Expect = 1.2
Identities = 30/97 (30%), Positives = 46/97 (47%), Gaps = 11/97 (11%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKE-----KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
+ E + + K+ E D E++I KE+ + ++ EEKEKK EK
Sbjct: 481 ELTSWESLLEWGGLPAGTKVAKGEPLFPRIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEK 540
Query: 150 EFKMKEDKEKPVEKIRKEE-KDSEKEKKSKDKDKKLK 185
+D +K VE +R E ++EK +KS DK LK
Sbjct: 541 PEITIDDFDK-VE-LRVAEVLEAEKVEKS---DKLLK 572
>gnl|CDD|227448 COG5118, BDP1, Transcription initiation factor TFIIIB, Bdp1 subunit
[Transcription].
Length = 507
Score = 30.8 bits (69), Expect = 1.3
Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 2/167 (1%)
Query: 19 PPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDL 78
P ++ D K K+ +K+ + N TS+
Sbjct: 135 PKKIRLGSITENDMNLKTFKRHRVLGKPSSAKKPAKISPPTAMTDSLDRNFSSETSTSRE 194
Query: 79 GEIKKDKSIKKDKKTHKK-KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEK 137
+ ++ I K K KK ++ E K D+++ + + + +I + EK K +K
Sbjct: 195 ADENENYVISKVKDIPKKVRDGESAKYFIDEENFTMAELCKPNFPIQISENFEKSKMAKK 254
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
K E++ + E + + K + + ++++S+ K
Sbjct: 255 AKLEKRRHVKFLEGSNT-HEMDQLLKHFLDNSNFRQDRRSRKKKASA 300
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit,
splicing factor. These splicing factors consist of an
N-terminal arginine-rich low complexity domain followed
by three tandem RNA recognition motifs (pfam00076). The
well-characterized members of this family are auxilliary
components of the U2 small nuclear ribonuclearprotein
splicing factor (U2AF). These proteins are closely
related to the CC1-like subfamily of splicing factors
(TIGR01622). Members of this subfamily are found in
plants, metazoa and fungi.
Length = 509
Score = 31.0 bits (70), Expect = 1.3
Identities = 8/122 (6%), Positives = 46/122 (37%), Gaps = 12/122 (9%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK----------KEEKEKKEEKEKK 146
+++E ++++ + +D+ ++ E+ + + D+ + + + ++ + + +
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 206
+ ++ R+ + + + + + + +K+ ++ S
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSRSVRSI--EQHRRRLRDRSPSNQWRKDDKKRSLWDIKP 118
Query: 207 PK 208
P
Sbjct: 119 PG 120
Score = 30.2 bits (68), Expect = 2.3
Identities = 12/120 (10%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
+D++ +++EK + + + ++ + +++++ + + + + E + ++ + +
Sbjct: 1 RDEEPDREREKSRGRDRDRSSERPRRRSRDRSRFRDRHRRSRERSYREDSRPRDRRRYDS 60
Query: 149 KEFKMKED------------KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+ + + + V I + + S K KK L K
Sbjct: 61 RSPRSLRYSSVRRSRDRPRRRSRSVRSIEQHRRRLRDRSPSNQWRKDDKKRSLWDIKPPG 120
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family. This model
represents a subfamily of RNA splicing factors including
the Pad-1 protein (N. crassa), CAPER (M. musculus) and
CC1.3 (H.sapiens). These proteins are characterized by
an N-terminal arginine-rich, low complexity domain
followed by three (or in the case of 4 H. sapiens
paralogs, two) RNA recognition domains (rrm: pfam00706).
These splicing factors are closely related to the U2AF
splicing factor family (TIGR01642). A homologous gene
from Plasmodium falciparum was identified in the course
of the analysis of that genome at TIGR and was included
in the seed.
Length = 457
Score = 31.0 bits (70), Expect = 1.3
Identities = 6/78 (7%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 111 KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
+D+ + + ++ ++ DK +E+ ++ + + + +++ ++ + + + R
Sbjct: 3 RDRERGRLRNDTRRSDKGRERSRRRSRSRDRSRRRRDRDYYRGRRGRSRSRSPNRYYR-- 60
Query: 171 SEKEKKSKDKDKKLKKEK 188
++ + D++ +
Sbjct: 61 PRGDRSYRRDDRRSGRNT 78
Score = 28.3 bits (63), Expect = 8.9
Identities = 7/89 (7%), Positives = 32/89 (35%), Gaps = 2/89 (2%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
+D+ + + ++ +K + + ++ + +D+ + +D++ + + +
Sbjct: 2 YRDRERGRLRNDTRRSDKGRERSRRRSRSRDR-SRRRRDRDYYRGRRGRSRSR-SPNRYY 59
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
+ E + + E+D
Sbjct: 60 RPRGDRSYRRDDRRSGRNTKEPLTEAERD 88
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase.
Length = 629
Score = 30.8 bits (70), Expect = 1.4
Identities = 24/104 (23%), Positives = 33/104 (31%), Gaps = 3/104 (2%)
Query: 51 EYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKI---KKKKD 107
E+S V T N V E L E S D + + +K+ K
Sbjct: 61 EFSHVGSARENGTKKTQNQVSEGVDEILKESGLTSSKPSDIVISSRSKLKKVFPDPKLNP 120
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF 151
K K +K K +K ++E EK E EF
Sbjct: 121 LPVKPHSVPVPSSDTKNKSTAIDKENKGQKADEDENEKSCELEF 164
>gnl|CDD|237972 PRK15483, PRK15483, type III restriction-modification system StyLTI
enzyme res; Provisional.
Length = 986
Score = 31.2 bits (71), Expect = 1.4
Identities = 22/111 (19%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNK---EKDKEKKIDKEKEKGKK 134
+GEI D ++ +++ ++ +KI +K K D D + + + D +K ID+ K
Sbjct: 577 VGEINSDSKVQLNEEKLTEEMIQKIVTEKQKVDPDFTELRLLEDLDDKKIIDRSNN--FK 634
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 185
E+ + E + +++ K + K K+ ++LK
Sbjct: 635 EDGFDWLLEAYPELFQTGLRKGK-----VRDNKPASKLTVKLRKENYEELK 680
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 30.7 bits (70), Expect = 1.5
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 159 KPVEKI--------RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 206
KP+E+I +E K+ E EK+ + +KK ++K KK K+ + E +
Sbjct: 61 KPLEEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEEL 116
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 31.0 bits (70), Expect = 1.5
Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 7/140 (5%)
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKK--DKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
DL +IK + KDK ++ K + K K D K ID E + +
Sbjct: 530 DLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRS 589
Query: 135 EEKEKK--EEKEKKEEKEFKMKEDKEKPVEKIRK--EEKDSEKEKKSKDKDKKLKKEKLK 190
E +K+ + + + +E E +DK + IR+ E ++ K ++ ++ K+ EKL+
Sbjct: 590 NEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKILIEKLR 649
Query: 191 KKKKE-KERSSHEKEVIPKL 209
K K++ + +IP L
Sbjct: 650 GKIDNYKKQIAEIDSIIPDL 669
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 30.2 bits (68), Expect = 1.5
Identities = 14/74 (18%), Positives = 32/74 (43%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
K++ E++ + K D + ++ + E+ + + +E+ EKEK ++ K
Sbjct: 24 KEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPA 83
Query: 156 DKEKPVEKIRKEEK 169
E+ K+ K
Sbjct: 84 QMSSTSEEEEKKAK 97
Score = 27.5 bits (61), Expect = 9.9
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS--KDKDKKLKKEKLK 190
KK E+K EK +K F ++E KEK E++ + K S+ E ++ ++ K+ L
Sbjct: 1 KKPYLEEKIEKAEKVTA-FALEELKEKI-EELPIQAKKSDDELVEELPERYEQTKENSLI 58
Query: 191 KKKKEKERSSHEKEVIPKLTFK 212
+K E EKE + K
Sbjct: 59 EKVDSIEEEISEKEKVMSEKLK 80
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 30.3 bits (68), Expect = 1.6
Identities = 29/105 (27%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE---KEFKMKEDKEKPVEKI 164
KKD+ I+ +E++ K+ E+E +K E+ K+E + EE KE ++K+ I
Sbjct: 44 KKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNTLLEANI 103
Query: 165 RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 209
+ D E E++ + K + +++K+ ++E+E EK I K+
Sbjct: 104 DDVDTDDENEEEEYEAWKLRELKRIKRDREEREEMEREKAEIEKM 148
>gnl|CDD|234961 PRK01581, speE, spermidine synthase; Validated.
Length = 374
Score = 30.7 bits (69), Expect = 1.6
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 102 IKKKKDKKDKDKIKNKEKDKEKKIDKEK---EKGKKEEKEKKEEKEKKEEKEFKMKEDKE 158
+K+ K +I + +KDK ++D K E+ E K+ K+ K+ K+++ + E K+
Sbjct: 3 KHRKQSKIKIYRITSYKKDKRSELDSNKFELEQQLVENKQDKQGKQYKQDRGIQYAETKQ 62
Query: 159 K 159
Sbjct: 63 D 63
>gnl|CDD|234229 TIGR03490, Mycoplas_LppA, mycoides cluster lipoprotein, LppA/P72
family. Members of this protein family occur in
Mycoplasma mycoides, Mycoplasma hyopneumoniae, and
related Mycoplasmas in small paralogous families that
may also include truncated forms and/or pseudogenes.
Members are predicted lipoproteins with a conserved
signal peptidase II processing and lipid attachment
site. Note that the name for certain characterized
members, p72, reflects an anomalous apparent molecular
weight, given a theoretical MW of about 61 kDa.
Length = 541
Score = 30.6 bits (69), Expect = 1.6
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Query: 88 KKDKKTHKKKEKE-KIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
+ K K E KI KK D K+ + N + + E K ++ EKK + K
Sbjct: 34 PEKKPEIKPNENTPKIPKKPDNKEPSENNNNKSNNENKDEENPSSTN---PEKKPDPSKN 90
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD-KDKKLKKEKLKKK 192
+E+ K K++ +KP +K + ++ ++ + + K +KLKK+
Sbjct: 91 KEEIEKPKDEPKKPDKKPQADQPNNVHADQPNNNKVDFSDLDKLKKE 137
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 30.7 bits (69), Expect = 1.6
Identities = 26/178 (14%), Positives = 68/178 (38%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
E + D+ K +++ ++++ + ++KK + + K ++++ E +
Sbjct: 149 EDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATE 208
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
EE+ +++ E+ ED + + E+++ ++E + +D KEK KKK
Sbjct: 209 AEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKD 268
Query: 194 KEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTG 251
+ + E + K E+ E + + + P + +
Sbjct: 269 AGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPV 326
Score = 29.2 bits (65), Expect = 5.4
Identities = 25/112 (22%), Positives = 54/112 (48%), Gaps = 2/112 (1%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK-MKED 156
E E K+K K + + ++ + DKE K + + K ++E++E E+++ + +E
Sbjct: 253 EYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEP 312
Query: 157 KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPK 208
E ++K++ +E E K + EK + K K++ ++ + PK
Sbjct: 313 PEAAMDKVKLDEPVLEGVDLESPK-ELSSFEKRQAKLKQQIEQLEKENLAPK 363
>gnl|CDD|234045 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter [Cellular processes,
Sporulation and germination].
Length = 382
Score = 30.4 bits (69), Expect = 1.7
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 96 KKEKEKIKKKKDKKDK-DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
+K +KK + K D + +K + E K+ E KE+ EK ++E ++
Sbjct: 275 GGKKIYLKKPPKEFAKYDVEEKTKKFGLWRWSLPIEIVKETYYEVKEKVEKVTKEEA-IE 333
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
+ KEK ++++KE + K K ++++ K+K
Sbjct: 334 KAKEKAEKELKKELDPNAKIVSDKILSERVEGGKVK 369
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 30.7 bits (70), Expect = 1.7
Identities = 21/67 (31%), Positives = 36/67 (53%)
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ E +K EE + +E + +EK E + EKEKK D+ KLK+ ++ + +KE E
Sbjct: 393 VRLEIDKPEELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEA 452
Query: 199 SSHEKEV 205
E ++
Sbjct: 453 EVDEDDI 459
>gnl|CDD|227382 COG5049, XRN1, 5'-3' exonuclease [DNA replication, recombination,
and repair / Cell division and chromosome partitioning /
Translation].
Length = 953
Score = 30.7 bits (69), Expect = 1.7
Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 5/147 (3%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
++ K I K T + +EK ++ KD + K + K +
Sbjct: 412 YEQKKLIGSIKPTLMDQLQEKKSPDLPDEEFIDTLALPKDLDMKNHELFLKRFANDLGLS 471
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE-----KEKKSKDKDKKLKKEKLKKKKKE 195
K K + + ++ D +EE +SE K ++E+ + +K
Sbjct: 472 ISKAIKSKGNYSLEMDIASDSPDEDEEEFESEVDSIRKIPDKYVNIIVEEEEENETEKTV 531
Query: 196 KERSSHEKEVIPKLTFKFGTDMEEKTK 222
R KE F TD EEK +
Sbjct: 532 NLRFPGWKERYYTSKLHFTTDSEEKIR 558
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 30.5 bits (69), Expect = 1.7
Identities = 33/172 (19%), Positives = 57/172 (33%), Gaps = 13/172 (7%)
Query: 65 MVPNIVKVTSSEDLG----EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD 120
+ N ++V SS D EIK D S + + +E+ + + +
Sbjct: 335 SIKNKIQVNSSSDSSREIEEIKFDLSEDR-SEIEILVFREQSQLSQSSLSGIFAYMQSLK 393
Query: 121 KEKKIDKEKEKGKKEEKEKKEEKEKKEEKE----FKMKEDKEKPVEK----IRKEEKDSE 172
KE + K + + + KK KE +K + +R+EE +
Sbjct: 394 KETETLKSRIDLIMKSIISGTFERKKLLKEEGWKYKSTLQFLRIEIDRLLLLREEELSKK 453
Query: 173 KEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRE 224
K K K + L E+ E E KL T + ++ R
Sbjct: 454 KTKIHKLNKLRHDLSSLLSSIPEETSDRVESEKASKLRSSASTKLNLRSSRS 505
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 30.4 bits (69), Expect = 1.7
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 4/96 (4%)
Query: 97 KEKEKIKKKKDKKDKDKIK-NKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
K K+ KK K + K K + I + +++ + +K+ K++E K
Sbjct: 325 KNDSKLNKKYILKIANDWARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSN 384
Query: 156 DKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
+K +E+ ++ E ++ K+L+ K K+
Sbjct: 385 ---PEYKKTTSQEEQAKLEFIKLEELKRLENGKQKR 417
Score = 29.3 bits (66), Expect = 3.8
Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+K+ ++ K K++ K KE + K + + K +E+ K + I E+ K + K+K
Sbjct: 358 RKRKELALAK-KQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRLENGKQK 416
Query: 140 K 140
+
Sbjct: 417 R 417
Score = 28.1 bits (63), Expect = 9.7
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
Query: 115 KNKEKDKEKKIDK-----EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEK 169
KN K +K I K ++K K + KE +++KE K + K E + K
Sbjct: 325 KNDSKLNKKYILKIANDWARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSN 384
Query: 170 DSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
K+ S+++ KL+ KL++ K+ +
Sbjct: 385 PEYKKTTSQEEQAKLEFIKLEELKRLENG 413
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 29.8 bits (67), Expect = 1.7
Identities = 14/86 (16%), Positives = 32/86 (37%)
Query: 112 DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDS 171
+K+K D + ++ EK + + E +K + + F M ++ + K + +
Sbjct: 97 EKLKEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGEP 156
Query: 172 EKEKKSKDKDKKLKKEKLKKKKKEKE 197
+E K + L + K
Sbjct: 157 LEEVIDKLEYPVESPADLLHEIKIHL 182
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 30.1 bits (68), Expect = 1.8
Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 17/119 (14%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKK------IDKEKEKGKKEEKEKKEEKEKKEEKE 150
+E EK KK+ K K +E K KK K KE G K ++ KK ++ +
Sbjct: 95 RELEKESKKQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESATSPES 154
Query: 151 -----------FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
K K R ++ S +K K + KK +K R
Sbjct: 155 SPSSTPNSSRPSTPHLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKKMR 213
>gnl|CDD|235516 PRK05582, PRK05582, DNA topoisomerase I; Validated.
Length = 650
Score = 30.6 bits (70), Expect = 1.8
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
E KK K + K +K ++ K+++D +I + K K+ K+ K K+K +K
Sbjct: 195 AEFKKGKKKFEASFYGYKGKKIEL---KNEEDVKEILAELKKKDFKVSKVKKKERK 247
Score = 30.6 bits (70), Expect = 1.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
KK K+K + KI+ K ++ K+I + K K + K ++KE+K
Sbjct: 198 KKGKKKFEASFYGYKGKKIELKNEEDVKEI-LAELKKKDFKVSKVKKKERK 247
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 30.8 bits (69), Expect = 1.8
Identities = 28/131 (21%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNK---EKDKEKKIDKEKEKGKK 134
L + +K++ K+ K + K K+K+KN KD E KI K+ K
Sbjct: 914 LETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKDDYLK 973
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
+++ + + E+ K +E + + +R++ + +++ + L+K + + K+
Sbjct: 974 QKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEV 1033
Query: 195 EKERSSHEKEV 205
E+E H KE+
Sbjct: 1034 EEELKQHLKEM 1044
Score = 28.9 bits (64), Expect = 6.2
Identities = 25/114 (21%), Positives = 56/114 (49%), Gaps = 1/114 (0%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKE-KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
K+ + +E +K +++ D K + KE + KI K + K + KK+ ++ E
Sbjct: 229 KEAQLESSREIVKSYENELDPLKNRLKEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSEL 288
Query: 150 EFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
E KM++ + E++ + ++ + K+++ + +L+K KE+ + EK
Sbjct: 289 ELKMEKVFQGTDEQLNDLYHNHQRTVREKERELVDCQRELEKLNKERRLLNQEK 342
Score = 28.5 bits (63), Expect = 9.3
Identities = 23/120 (19%), Positives = 59/120 (49%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ ++ + K + + K++ ++ D+I++++K + I+ +KE +K+++E
Sbjct: 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEEL 456
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
K ++ ++ E E E + E + S+ EK S + K + + L+ +K + +R
Sbjct: 457 KFVIKELQQLEGSSDRILELDQELRKAERELSKAEKNSLTETLKKEVKSLQNEKADLDRK 516
>gnl|CDD|184294 PRK13743, PRK13743, conjugal transfer protein TrbF; Provisional.
Length = 141
Score = 29.4 bits (66), Expect = 1.8
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 180
K ++ MKE K KIR+ ++D + E++ D
Sbjct: 4 YKYQRPLSMKEKKNDAELKIRQTKRDYDYERRVSDI 39
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 29.8 bits (67), Expect = 1.9
Identities = 35/136 (25%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 112 DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE--- 168
+I+NK + EK D+ K + + E E+K KE +E E ++E K + VE++R+
Sbjct: 4 KEIRNKTDELEKLKDEIKAEEEALESEEKHLKEYDKEMEELLEE-KMQHVEELRQIHADI 62
Query: 169 KDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTF---KFGTDMEEKTKRES 225
D E E K + + + K+ + E + KL + EE+ ++ S
Sbjct: 63 NDMETEIKQSKSELERRMGKIARMHGEYNPLKESINEMRKLELGLEELPQLHEEERQKIS 122
Query: 226 SPKIVIKPVKSPSPPP 241
+ PV P PP
Sbjct: 123 PATSPVPPVPLPDPPA 138
>gnl|CDD|234547 TIGR04330, cas_Cpf1, CRISPR-associated protein Cpf1, subtype
PREFRAN. This family is the long protein of a novel
CRISPR subtype, PREFRAN, which is most common in
Prevotella and Francisella, although widely distributed.
The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the
helicase Cas3 and endonuclease Cas3-HD.
Length = 1287
Score = 30.6 bits (69), Expect = 1.9
Identities = 32/133 (24%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
IK+ +++DK + + +++KK DK KD I+ + E D +E K KK
Sbjct: 28 IKELGLLEQDK--ARAESYKELKKIIDKYHKDFIEETLSNVELSFDLLEEYFDLYNKLKK 85
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
+K+KK+ + + K+ V+ ++ + +E KKL K L+ K + S
Sbjct: 86 FKKDKKDLAKEQDTLRKQI-VKSLQ---DNLPEEIFKNIFSKKLLKGVLEDFIKNTHKDS 141
Query: 201 HEKEVIPKLTFKF 213
+++ I +F
Sbjct: 142 EDEQNILIDIKEF 154
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 30.4 bits (68), Expect = 1.9
Identities = 45/252 (17%), Positives = 82/252 (32%), Gaps = 8/252 (3%)
Query: 14 PPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKE-KEYSKVKDVELGVTP-----MVP 67
PP P S + K + E SKE PKE + + K+ E+G P P
Sbjct: 510 PPEGPEASGLPPKAPGDKEGEEGEHEDSKESDEPKEGGKPGETKEGEVGKKPGPAKEHKP 569
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
+ + S + K K K ++ K K ++ K + + K K +
Sbjct: 570 SKIPTLSKKPEFP-KDPKHPKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPE 628
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
+ K+ ++ ++ E +K K K + K EK KE
Sbjct: 629 SPKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKPPFDPKFKEKFYDDYLDAAAKSKE 688
Query: 188 KLKKKKKEKERSSHEKEVIPKLT-FKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAAD 246
++ S KE +P+ F T K + +P+ P +
Sbjct: 689 TKTTVVLDESFESILKETLPETPGTPFTTPRPLPPKLPRDEEFPFEPIGDPDAEQPDDIE 748
Query: 247 EYDTGDSKQVWI 258
+ + ++ +
Sbjct: 749 FFTPPEEERTFF 760
Score = 28.9 bits (64), Expect = 6.2
Identities = 47/175 (26%), Positives = 68/175 (38%), Gaps = 11/175 (6%)
Query: 70 VKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDK-KDKDKIKNKEKDKEKKIDKE 128
+++ + EIKK IKK KK E+E K + + + K K +E
Sbjct: 474 TRISKIQFTQEIKK--LIKKSKKKLAPIEEEDSDKHDEPPEGPEASGLPPKAPGDKEGEE 531
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE----KEKKSKDKDKKL 184
E KE E KE + E K E +KP KE K S+ +K KD K
Sbjct: 532 GEHED--SKESDEPKEGGKPGETKEGEVGKKPGPA--KEHKPSKIPTLSKKPEFPKDPKH 587
Query: 185 KKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSP 239
K+ + KK ++ RS+ D+ + KR SPK +P P
Sbjct: 588 PKDPEEPKKPKRPRSAQRPTRPKSPKLPELLDIPKSPKRPESPKSPKRPPPPQRP 642
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 30.6 bits (69), Expect = 1.9
Identities = 16/50 (32%), Positives = 33/50 (66%)
Query: 121 KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
KEKK +K++EK ++ + E+ +E+ ++EEK F + ++ +E +K K+
Sbjct: 280 KEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIKE 329
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 30.5 bits (69), Expect = 1.9
Identities = 22/174 (12%), Positives = 58/174 (33%), Gaps = 13/174 (7%)
Query: 25 DKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKD 84
DK+ ++ + ++K K++T + + D E + E
Sbjct: 57 DKMKAYEQEALEQKQKDKKRTLQDLADSFEKSDKESQDYSSSDSGFDEEPDEPAETAGSL 116
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
+ I+ ++ +E + + + + +KE + +E + + +
Sbjct: 117 RPIRSSAAAYRDINRE-------------LGSFYEYPKTDEEKELLREVEELESRLATEP 163
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ + EK E K ++ + KK KK ++ + +E+
Sbjct: 164 SPAPELEEQLALMEKSYELAAKYMPRGQERLPVAPESKKGKKPSVQPVRAVEEK 217
Score = 29.3 bits (66), Expect = 3.8
Identities = 16/71 (22%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 135 EEKEKKEEKEKK------EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
EE++ EE+ K + K+ + DK K E+ E+K +K++ +D +K
Sbjct: 30 EEEDAAEEETKGFNADIPQPKDEGIIGDKMKAYEQEALEQKQKDKKRTLQDLADSFEKSD 89
Query: 189 LKKKKKEKERS 199
+ + S
Sbjct: 90 KESQDYSSSDS 100
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 30.2 bits (69), Expect = 2.1
Identities = 13/72 (18%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 115 KNKEKDKE---KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDS 171
+ KEK + K + K +E E+++ +E++++++ + + + ++ +EE+
Sbjct: 490 RRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKE 549
Query: 172 EKEKKSKDKDKK 183
EK+K++++ + +
Sbjct: 550 EKDKETEEDEPE 561
Score = 29.5 bits (67), Expect = 4.4
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 149 KEFKMKED----KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
KE KMKE+ K +K+++ +++ + E++ KD+ L +K K KE+E ++E
Sbjct: 492 KEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDF-VKSKGKEEEEEEEKEE 550
Query: 205 VIPKLTFKFGTDMEEKTKRESSPKIVI 231
E + PKI++
Sbjct: 551 KDK----------ETEEDEPEGPKIIV 567
Score = 29.1 bits (66), Expect = 4.9
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 104 KKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE-EKEFKMKEDKEKPVE 162
++K+KK K+++KN + KK+ + E+ K EE+EK E+ + K +E++E+ E
Sbjct: 490 RRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEKE 549
Query: 163 KIRKEEKDSEKEK 175
+ KE ++ E E
Sbjct: 550 EKDKETEEDEPEG 562
>gnl|CDD|220654 pfam10254, Pacs-1, PACS-1 cytosolic sorting protein. PACS-1 is a
cytosolic sorting protein that directs the localisation
of membrane proteins in the trans-Golgi network
(TGN)/endosomal system. PACS-1 connects the clathrin
adaptor AP-1 to acidic cluster sorting motifs contained
in the cytoplasmic domain of cargo proteins such as
furin, the cation-independent mannose-6-phosphate
receptor and in viral proteins such as human
immunodeficiency virus type 1 Nef.
Length = 413
Score = 30.2 bits (68), Expect = 2.1
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSHEKEV 205
+K+K+KK+ L KK KEKE S + +
Sbjct: 331 TKEKNKKVPVMFLGKKPKEKEVESKSQCI 359
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 30.4 bits (68), Expect = 2.1
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 105 KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKI 164
++++ E+D E+ +KE K E+ E++EE+E K K+F E + K +
Sbjct: 136 PDLVLEEEEEVEMEED-EEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLESQTK--KPS 192
Query: 165 RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
K+ S S KKL+K + K+K K+
Sbjct: 193 VKDNGKSFWSAASV-FSKKLQKWRQKQKLKKP 223
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 30.0 bits (68), Expect = 2.1
Identities = 29/126 (23%), Positives = 65/126 (51%), Gaps = 4/126 (3%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
++K K ++K+ + KK +E K K+ K + D++K K ++ +KI + + ++ +E
Sbjct: 137 VQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMI 196
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRK----EEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+ E+ +E + E E+ VE +K E+ + + ++ +KK+K + K+K ++
Sbjct: 197 KLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKR 256
Query: 197 ERSSHE 202
E
Sbjct: 257 REKREE 262
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 30.5 bits (70), Expect = 2.1
Identities = 31/120 (25%), Positives = 52/120 (43%), Gaps = 32/120 (26%)
Query: 89 KDKKTHKKKE----------KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
KDK T K++ E+I++ KD N E+DK+ +KE E
Sbjct: 482 KDKGTGKEQSITITASSGLSDEEIERMV----KDAEANAEEDKK----------RKELVE 527
Query: 139 KKEEKE------KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK-KLKKEKLKK 191
+ + + +K KE K ++ EKI K+ ++ K +DK+ K K E+L +
Sbjct: 528 ARNQADSLIYQTEKTLKELGDKVPADE-KEKIEAAIKELKEALKGEDKEAIKAKTEELTQ 586
>gnl|CDD|233469 TIGR01564, S_layer_MJ, S-layer protein, MJ0822 family. This model
represents one of several families of proteins
associated with the formation of prokaryotic S-layers.
Members of this family are found in archaeal species,
including Pyrococcus horikoshii (split into two tandem
reading frames), Methanococcus jannaschii, and related
species. Some local similarity can be found to other
S-layer protein families [Cell envelope, Surface
structures].
Length = 571
Score = 30.3 bits (68), Expect = 2.1
Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 25/150 (16%)
Query: 30 KDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKK 89
KD EK S K Y +G+ ++ V ++K K +K
Sbjct: 310 KDGKVVAEKSDSDTKDGALVHVY---FGGGIGIQ-VLDAWENVGGDYGYVQLKIYKDLKT 365
Query: 90 DKKTHK----------KKEKEKIKKKKDKKDKDKIKNKE--------KDKEKKIDKEKEK 131
+ + + + K D+D +++KE D + KE
Sbjct: 366 LELGEEYMPDWKAEFAIDDNNTVIKWDALVDEDPLEDKEIGIFLTYTGDYSDTVKSGKEV 425
Query: 132 GKKEEKEKKEEKEKKEEK---EFKMKEDKE 158
G E K + E KE+K +F M E K+
Sbjct: 426 GIIEYAVLKLDDEDKEDKLYIDFSMDEYKD 455
>gnl|CDD|227369 COG5036, COG5036, SPX domain-containing protein involved in
vacuolar polyphosphate accumulation [Inorganic ion
transport and metabolism].
Length = 509
Score = 30.2 bits (68), Expect = 2.1
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
E+K +E G+ K + + KEK K K E+ K+RKE + ++ + ++
Sbjct: 277 ERKTHREDWTGESSFKARFQLKEKFVNKFIKGDYTFEEQFAKVRKEGGTTAEDLERLERL 336
>gnl|CDD|225405 COG2849, COG2849, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 230
Score = 29.7 bits (67), Expect = 2.1
Identities = 23/110 (20%), Positives = 44/110 (40%), Gaps = 1/110 (0%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEK 137
++ K+ D T I++K + +K + K K D++ K+ + + EE
Sbjct: 2 GDIVETSKNGVDDGVTITYYLNGAIEEKANYVNKLEGKEKLYDEDGKLLSKLDFSAGEEV 61
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
+ KEE + + E K+ P I E+ E ++ K K +
Sbjct: 62 KSKEEYYDNGTLKGEYLEGKKTPFTGI-VEKYYENGELEAAIYYKNGKLD 110
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 29.1 bits (66), Expect = 2.2
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 102 IKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPV 161
I K K D ++K K+KK +K + +EKK++ EE++ K +
Sbjct: 68 ISGVKVPKLNDAYFKRKKKKKKK-----KKEGEFFEEKKKKYVVSEERKEDQKAVDAALL 122
Query: 162 EKIRKEE 168
I+K
Sbjct: 123 AAIKKVP 129
Score = 28.3 bits (64), Expect = 4.8
Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 124 KIDKEKEKGKKEEKE--KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
K+D K K K+++K+KK++KE + E+K+K K E+++ K D
Sbjct: 65 KVDISGVKVPKLNDAYFKRKKKKKKKKKEGEFFEEKKK------KYVVSEERKEDQKAVD 118
Query: 182 KKLKKEKLKKKK 193
L +KK
Sbjct: 119 AALLAA-IKKVP 129
Score = 27.5 bits (62), Expect = 7.7
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKE 128
KV S D K+ KK KKK++ + ++K K K + + K+ +K +D
Sbjct: 65 KVDISGVKVPKLNDAYFKRKKKKKKKKKEGEFFEEKKK--KYVVSEERKEDQKAVDAA 120
>gnl|CDD|225102 COG2191, COG2191, Formylmethanofuran dehydrogenase subunit E
[Energy production and conversion].
Length = 206
Score = 29.7 bits (67), Expect = 2.3
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKD-KEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
K+ K + +K++ +D +K + K E E K+ +E + +E+
Sbjct: 93 KRGSGKAVRVYVKREILDEDPEKTELFPKVRAGYLGPSEIETRKEHWEELEWILLMPDEE 152
Query: 150 EFKMKEDKEKPVEKIRKEE 168
F++KE +P EK +K
Sbjct: 153 LFEVKEVDVEPPEKAKKFG 171
>gnl|CDD|147348 pfam05124, S_layer_C, S-layer like family, C-terminal region.
Length = 223
Score = 29.7 bits (67), Expect = 2.4
Identities = 23/93 (24%), Positives = 33/93 (35%)
Query: 52 YSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDK 111
Y VK +ELG + + G+++ ++KT K D KD
Sbjct: 15 YKDVKTLELGEEYIPDWEAYAVLDDGKGKLEYKDDEVLEQKTVGLALKYVGDYLDDIKDG 74
Query: 112 DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
DKIK K D++ E E KE
Sbjct: 75 DKIKIANYAKLLFDDEDSSDKLNVYFEMDEYKE 107
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 30.0 bits (67), Expect = 2.4
Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 19/153 (12%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHK---KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
K+ E L E K + K +K K + K I ++ + NK + +K
Sbjct: 139 KMNRREKLRERKALNAAKFEKNIEKELMLRLKSGIYGDTPLNVREHLWNKAATEREKRQD 198
Query: 128 EKEKGKKEEKEKKEEKE---KKEEKEFKMKEDKEKPV-------------EKIRKEEKDS 171
EKE+ +EE+E E E EKE K+D EK + E+ + E D
Sbjct: 199 EKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDE 258
Query: 172 EKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
++++ +K K +K K + KK +K +E+E
Sbjct: 259 DEDEDNKGKIRKRKTDDAKKSRKPHIHIEYEQE 291
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 29.9 bits (66), Expect = 2.4
Identities = 34/142 (23%), Positives = 70/142 (49%), Gaps = 9/142 (6%)
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
+L + KK+ +D+ E E+ ++K +++ + K + +I E+EK K E
Sbjct: 129 ELAQAKKEAENARDRANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTE- 187
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+EK+K E+++ K K ++ +E++ +E EK+ K++K K+ ++
Sbjct: 188 ----QEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQK----DFIKEAEQN 239
Query: 197 ERSSHEKEVIPKLTFKFGTDME 218
+ +H + I KL K G +E
Sbjct: 240 CQENHNQFFIKKLGIKAGIAIE 261
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 30.3 bits (69), Expect = 2.4
Identities = 8/42 (19%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
++KK +KK +K+++ + + K K+ + +K++
Sbjct: 84 REKKKYKKD-----VEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.8 bits (65), Expect = 7.4
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 99 KEKIKKKKDKKDKDKI-KNKEKDKEKKIDKEKEKGKK 134
+EK K KKD + +++ + K K++ EK +
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 30.0 bits (67), Expect = 2.5
Identities = 30/135 (22%), Positives = 58/135 (42%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
E+ + + + THK K E + + KE +K K+ +E +E
Sbjct: 159 EEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEE 218
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
K+K+EE+ K E+E + ++ +E + +EEK KE+ + + + +K + +
Sbjct: 219 LKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGL 278
Query: 196 KERSSHEKEVIPKLT 210
E K PK +
Sbjct: 279 SEDKKPFKCFTPKGS 293
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 29.3 bits (66), Expect = 2.5
Identities = 15/78 (19%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 102 IKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE-----EKEKKEEKEFKMKED 156
+KK K ++ E+ E ++D +++K ++E+ E + E +++ E
Sbjct: 95 TEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILI 154
Query: 157 KEKPVEKIRKEEKDSEKE 174
++ V++ +++D E E
Sbjct: 155 EDDEVDEDEDDDEDEEDE 172
>gnl|CDD|183377 PRK11910, PRK11910, amidase; Provisional.
Length = 615
Score = 30.0 bits (67), Expect = 2.5
Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Query: 71 KVTSSEDLGEIKKDK--SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKE 128
+ T+SE+ + K K ++KK+K K K++ + NK+ E+ ID+
Sbjct: 29 QTTTSENKSAVSKKKKPTVKKEKPKQSSNNLTLGKNKENFHLEKGFGNKQLQVERIIDRI 88
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
+ K E K + + +K+ +K K P + + E+ S K++
Sbjct: 89 FQSSLKNRTEIKVKPKNNPQKKQNIKPVKPIPSKPEKPEDSPSPFYDKAR 138
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 29.8 bits (67), Expect = 2.6
Identities = 39/177 (22%), Positives = 70/177 (39%), Gaps = 15/177 (8%)
Query: 24 KDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKK 83
VS +++SP K PKEK+ S L + + ED+ +
Sbjct: 247 SRSVSDSEESSPPSKK-------PKEKKTSSTFLPSLMGGYFSGSEDEDDDDEDIDPDQV 299
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
K K K ++ ++ I +KK +K KE++KE+K + ++ + + K+E
Sbjct: 300 VKKPVKRKNRRGQRARQAIWEKKYGSGAKHVK-KEREKEQKEREGRQSEWEARQAKREGG 358
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD-------KKLKKEKLKKKK 193
+ K + + + + K + + +K S DK KK KEK K
Sbjct: 359 DAKAGRAAEPTGSRTQQKGDRPKRGEKKKPKKPSVDKPLHPSWEAKKKAKEKKANAK 415
Score = 29.0 bits (65), Expect = 5.6
Identities = 26/146 (17%), Positives = 56/146 (38%), Gaps = 18/146 (12%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK-- 139
+ + K K +K K KKK K K + K +++ + +++ K EE +
Sbjct: 131 SIMEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDD 190
Query: 140 --KEEKEKKEEKEFKMKE-------DKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK---- 186
EE+E + +++ + D+E+ E + E +S + D ++ +
Sbjct: 191 SDDEEEEDSDSEDYSQYDGMLVDSSDEEEGEEAPSINYNEDTSESESDESDSEISESRSV 250
Query: 187 ---EKLKKKKKEKERSSHEKEVIPKL 209
E+ K+ + +P L
Sbjct: 251 SDSEESSPPSKKPKEKKTSSTFLPSL 276
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 30.0 bits (68), Expect = 2.6
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
KE K + D +K+ + +++K + + +E K + K+ + K +K+
Sbjct: 13 LVKESLKARGLSVDIDLEKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKK---- 68
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
+E+I+KE K+ ++E K + +L+ K
Sbjct: 69 ----DKIEEIKKELKELKEELTELSAALKALEAELQDK 102
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 29.6 bits (67), Expect = 2.6
Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 113 KIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE---KEFKMKEDKEKPVEKIRKEEK 169
K + ++ ++ K+ + KK K+K++ K+ E KE++ E + ++++ K+
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Query: 170 DSEKEKKSK 178
+ K
Sbjct: 65 KFYVPAEHK 73
Score = 28.9 bits (65), Expect = 4.1
Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 101 KIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK-KEEKEKKEEKEFKMKEDKEK 159
+KK+K +++ K+ +KK +K+K K + E +E K E + ++K +K
Sbjct: 3 LLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKK 62
Query: 160 P 160
P
Sbjct: 63 P 63
Score = 28.5 bits (64), Expect = 5.7
Identities = 16/69 (23%), Positives = 30/69 (43%)
Query: 123 KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
KK +E + K+ K +K+ ++K + E V++ RK E++ + K+ K
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Query: 183 KLKKEKLKK 191
K K
Sbjct: 65 KFYVPAEHK 73
>gnl|CDD|187774 cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) and associated Cas proteins comprise a system
for heritable host defense by prokaryotic cells against
phage and other foreign DNA; Very large protein
containing McrA/HNH-nuclease related domain and a
RuvC-like nuclease domain; signature gene for type II.
Length = 799
Score = 30.1 bits (68), Expect = 2.6
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 19/132 (14%)
Query: 78 LGEIKKDKSIKKDKKTH--KKKEKEKI----KKKKDKKDKDKIKNKEKDKEKKIDKEKEK 131
L E+ + I++ +T K+EK+++ KK K K K +E+ + +
Sbjct: 292 LNELNNLRIIEEQGETKILSKEEKQELLDLLFKKNKLTYKQKRKLLGLKEEEIFKGLRYE 351
Query: 132 GKKEEKEKKEE-------KEKKEEKEFKMKEDKEKPVEKIRK-----EEKDSEKEKKSKD 179
G K EK ++ ++ K E EK +++I K ++++ ++
Sbjct: 352 GLKAEKNFNISLKTYHDLRKALGKEFLKDLELNEKILDEIVKILTLYKDREMIEKILELY 411
Query: 180 KDKKLKKEKLKK 191
KD L +E+LKK
Sbjct: 412 KD-LLNEEQLKK 422
Score = 28.9 bits (65), Expect = 5.8
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Query: 97 KEKEKIKKKKDKKDKDKIKN--KEKDKEKKIDKEKEKGKKEEKEKK--EEKEKKEEKEFK 152
E++ K K++K ++ + +K+K K K G KEE+ K + K EK F
Sbjct: 301 IEEQGETKILSKEEKQELLDLLFKKNKLTYKQKRKLLGLKEEEIFKGLRYEGLKAEKNFN 360
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK------LKKEKLKKKKKEKERSSHEKEVI 206
+ + K +E + E K D+ K ++ +K E + +E +
Sbjct: 361 ISLKTYHDLRKALGKEFLKDLELNEKILDEIVKILTLYKDREMIEKILELYKDLLNEEQL 420
Query: 207 PKL 209
KL
Sbjct: 421 KKL 423
>gnl|CDD|226096 COG3566, COG3566, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 379
Score = 29.9 bits (67), Expect = 2.7
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 103 KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVE 162
+ D I ++ K + E + +K + +K+ + K D + +
Sbjct: 184 PITTRRIGVDGIS-LSLEETKASEVEHLSASLKTATEKVDALEKDLHAAQAKLDSGQALT 242
Query: 163 KIRKEEKDSEKEKKSKDKDKKLKKEK 188
K + K +E K + ++
Sbjct: 243 KEELDAKKAELSKALAALEAANAADE 268
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 29.1 bits (66), Expect = 2.7
Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 9/55 (16%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
+ +++ K + K+K + E ++ + + KE + E + +
Sbjct: 65 AAAPRAELQAKIARYKKEK---------ARYRSEAKELEAKAKEAEAESDHALHQ 110
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 29.3 bits (66), Expect = 2.7
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
E +K+EKEKKE+ + ++++ K E+ ++K KE + E + D+ KK+K
Sbjct: 159 ELLRKKEKEKKEQLKIQKKQSLLEKYGGEEHLDKPPKELLLGQSEDYV-EYDRAGKKKKA 217
Query: 190 KKKKKE 195
K K +E
Sbjct: 218 KSKYEE 223
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 29.2 bits (66), Expect = 2.7
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKN-KEKDKEKKIDKEKEKGKK 134
KK + +KK + K+ E + KKK + +++K K K+ K+KK+ K G K
Sbjct: 151 KKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMK 204
Score = 28.8 bits (65), Expect = 4.5
Identities = 19/67 (28%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 141 EEKEKKEEKEFKMKEDK-----EKPVEKIRK-----EEKDSEKEKKSKDKDKKLKKEKLK 190
+ KE+ ++K +K ++K K VE+++K +E ++ ++KK + ++ KK+K K
Sbjct: 128 DVKEEGDDKFYKYSDEKLLAWLLKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKK 187
Query: 191 KKKKEKE 197
K K+K+
Sbjct: 188 KSAKKKK 194
>gnl|CDD|221288 pfam11882, DUF3402, Domain of unknown function (DUF3402). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 350 to 473 amino acids in length. This domain is
found associated with pfam07923.
Length = 402
Score = 30.0 bits (68), Expect = 2.7
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
K+ + K K+ EE+E MK ++ E + + D + K + + + K
Sbjct: 12 SKKVRMKLATKQLWEEREKFMKYERGWDTESLVGDPLDISESVKELKLEMYTSLAEDQPK 71
Query: 193 KKEKERSSHEKEVIPKLT 210
K+E ER S + E IP+L
Sbjct: 72 KEEIERLSTDSEEIPRLD 89
>gnl|CDD|153363 cd07679, F-BAR_PACSIN2, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Protein kinase C and
Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR
domains are dimerization modules that bind and bend
membranes and are found in proteins involved in membrane
dynamics and actin reorganization. Protein kinase C and
Casein kinase Substrate in Neurons (PACSIN) proteins,
also called Synaptic dynamin-associated proteins
(Syndapins), act as regulators of cytoskeletal and
membrane dynamics. Vetebrates harbor three isoforms with
distinct expression patterns and specific functions.
PACSIN 2 or Syndapin II is expressed ubiquitously and is
involved in the regulation of tubulin polymerization. It
associates with Golgi membranes and forms a complex with
dynamin II which is crucial in promoting vesicle
formation from the trans-Golgi network. PACSIN 2
contains an N-terminal F-BAR domain and a C-terminal SH3
domain. F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 258
Score = 29.6 bits (66), Expect = 2.8
Identities = 26/94 (27%), Positives = 44/94 (46%)
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
+D +KIKN +K+ K K KE ++ + +K K+ K E +K KEE
Sbjct: 90 EDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEE 149
Query: 169 KDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
K + + + D L E+LKK + + E+ +
Sbjct: 150 KLATSREANSKADPALNPEQLKKLQDKVEKCKQD 183
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 28.9 bits (65), Expect = 2.8
Identities = 13/70 (18%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
E+E KEE E E+E ++ + + D ++ ++ K +K K++K
Sbjct: 68 ERELKEEAEA--EEEGEVDASPD-AGAVAGESSADRKEAEQQGAAQK--RKSCRDKERKS 122
Query: 196 KERSSHEKEV 205
+ +
Sbjct: 123 AKDPRGGTQD 132
>gnl|CDD|223173 COG0095, LplA, Lipoate-protein ligase A [Coenzyme metabolism].
Length = 248
Score = 29.7 bits (67), Expect = 2.8
Identities = 14/75 (18%), Positives = 33/75 (44%)
Query: 124 KIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
++ KEK K K + ++ +E + ++E E +E K +E + ++ +
Sbjct: 170 RVPKEKIKSKGIKSVRERVANLEELLKISVEEFLEALLEAFFKVLGVELEEYELTPEELE 229
Query: 184 LKKEKLKKKKKEKER 198
L ++ ++K E
Sbjct: 230 LAEKLAEEKYSSWEW 244
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 29.4 bits (67), Expect = 2.9
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
DKD + + K+ + ++EE+E++EE+E+ E+E
Sbjct: 279 ADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEE 320
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 29.4 bits (66), Expect = 2.9
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 94 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKE 128
K KKKK K K+K+K K+ + +KK +
Sbjct: 82 RKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAREG 116
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 29.8 bits (67), Expect = 2.9
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 24/123 (19%)
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
K KI+ +K+ + I K KEK +E+ EE E+ E E KE++E+ ++KEE
Sbjct: 117 NTKKKIETYQKENKDVIQKNKEKSTREQ----EELEEALEFE---KEEEEQRRLLLQKEE 169
Query: 169 KDSEKEKKSKDKDKKLKKEKLK-------------KKKKEKERSSHEKEVIPKL-TFKFG 214
E+++ +K K+K+ ++L+ KK K EK K TF G
Sbjct: 170 ---EEQQMNKRKNKQALLDELETSTLPAAELIAQHKKNSVKLEMQVEKPKPEKPNTFSTG 226
Query: 215 TDM 217
M
Sbjct: 227 IKM 229
Score = 29.4 bits (66), Expect = 3.4
Identities = 25/110 (22%), Positives = 60/110 (54%), Gaps = 9/110 (8%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
KK +T++K+ K+ I+K K+K +++ + +E E EK ++E++ +KE++E
Sbjct: 119 KKKIETYQKENKDVIQKNKEKSTREQEELEEA-------LEFEKEEEEQRRLLLQKEEEE 171
Query: 148 EKEFKMKEDKEKPVEKIRKEEKD-SEKEKKSKDKDKKLKKEKLKKKKKEK 196
++ K +++K+ ++++ +E + K KL+ + K K ++
Sbjct: 172 QQMNK-RKNKQALLDELETSTLPAAELIAQHKKNSVKLEMQVEKPKPEKP 220
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 28.0 bits (63), Expect = 3.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 130 EKGKKEEKEKKEEKEKKEEKE 150
+E+KE++EE+E+KEE E
Sbjct: 74 AAAAEEKKEEEEEEEEKEESE 94
Score = 27.6 bits (62), Expect = 4.1
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKE 150
+K+E+E++EE++++ E+E
Sbjct: 74 AAAAEEKKEEEEEEEEKEESEEE 96
Score = 26.8 bits (60), Expect = 7.9
Identities = 7/23 (30%), Positives = 17/23 (73%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKE 150
+++++E++EE+EK+E +E
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEE 95
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting
Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are
mainly expressed in hematopoietic cells and are involved
in the regulation of cell adhesion and motility.
Mutations in PSTPIPs have been shown to cause
autoinflammatory disorders. PSTPIP1 contains an
N-terminal F-BAR domain, PEST motifs, and a C-terminal
SH3 domain, while PSTPIP2 contains only the N-terminal
F-BAR domain. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 239
Score = 29.4 bits (66), Expect = 3.0
Identities = 22/93 (23%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
+K+ + + N + + +E EK ++ +++KEE++K E+ + +++K++ +K K
Sbjct: 66 RKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTEDIMKRSQKNKKELYKKTMKA 125
Query: 168 EKDSEKEKKSKDK-DKKLKKEKLKKKKKEKERS 199
+K E++ + KDK ++ +K + KE E+
Sbjct: 126 KKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKL 158
>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional.
Length = 159
Score = 28.9 bits (65), Expect = 3.1
Identities = 28/93 (30%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 112 DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE-EKD 170
DKIK ++ +ID + EK +++K+ +E K K E + KE+ +K VE+ + + E
Sbjct: 28 DKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENV 87
Query: 171 SEKEKKSKDKDKKLKKEKLKKK-KKEKERSSHE 202
E+ K ++ L E+ K + ++EKE++ +E
Sbjct: 88 YEEIVKEAHEEADLIIERAKLEAQREKEKAEYE 120
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 28.2 bits (63), Expect = 3.1
Identities = 11/24 (45%), Positives = 21/24 (87%)
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKE 150
E++ +KEE++KKEE++++EE+E
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 27.8 bits (62), Expect = 3.7
Identities = 12/24 (50%), Positives = 21/24 (87%)
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKE 150
+EK +++E+EKK+E+EK+EE+E
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEE 96
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 30.0 bits (68), Expect = 3.1
Identities = 26/121 (21%), Positives = 61/121 (50%), Gaps = 8/121 (6%)
Query: 95 KKKEKEKIK--------KKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
KK E E+++ ++++ K+ + + + E D G+ EE E++EE
Sbjct: 272 KKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVD 331
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 206
+E E +D E+ E + +++ ++E + D + ++E+ +K+KK+K+ + + +
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSEL 391
Query: 207 P 207
P
Sbjct: 392 P 392
Score = 29.2 bits (66), Expect = 5.4
Identities = 33/126 (26%), Positives = 67/126 (53%), Gaps = 15/126 (11%)
Query: 91 KKTHKKKEKEKIKKKKDKK-DKDKIKNKEKDKEKKIDKEKE-------KGKKEEKEKKEE 142
KK+ K+ KE I K K K ++ K K +++D +++D + + K K
Sbjct: 172 KKSKKEVMKEVIAKSKFYKAERQKAKEEDEDLREELDDDFKDLMSLLRTVKPPPKPPMTP 231
Query: 143 KEKKEEKEFKMKE---DKE-KPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+EK +E + +++E D+ +P ++ + EE E K+ ++ KKL+ E+L++ + E+E
Sbjct: 232 EEKDDEYDQRVRELTFDRRAQPTDRTKTEE---ELAKEEAERLKKLEAERLRRMRGEEED 288
Query: 199 SSHEKE 204
E++
Sbjct: 289 DEEEED 294
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 29.8 bits (68), Expect = 3.1
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
+K K + K K +K K K++ + EK GK
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEK-DGKA 858
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase.
Length = 603
Score = 29.9 bits (67), Expect = 3.2
Identities = 24/140 (17%), Positives = 52/140 (37%), Gaps = 18/140 (12%)
Query: 72 VTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKK---DKKDKDKIKNKEKDKEKKIDKE 128
V+ + +S HK KE++ +K ++ +I ++ K
Sbjct: 86 VSYNSSDKNNDSLESEVDGGNNHKPKEEQAQVSQKTTVSSSEEVQISARDIQLNHKTQFN 145
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKED---------------KEKPVEKIRKEEKDSEK 173
K E+ + + + +EK ++++ + V+++R K+ E+
Sbjct: 146 PPTVKHEKNTRVQPRRATDEKVKEIRDKIIQAKAYLNLAPPGSNSQLVKELRLRTKELER 205
Query: 174 EKKSKDKDKKLKKEKLKKKK 193
KDK L K L++ K
Sbjct: 206 AVGDATKDKDLSKSALQRMK 225
>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated.
Length = 141
Score = 28.5 bits (64), Expect = 3.2
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 82 KKDKSIKKDKKTHKKKEKE--KIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
++ SIK D + K + +I+ + + K+ + K ++K I K KE+ +K+ + K
Sbjct: 38 NRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKAIAKAKEEAEKKIEAK 97
Query: 140 KEEKEKK-EEKEFKMKEDKE 158
K E E K E ++ K+
Sbjct: 98 KAELESKYEAFAKQLANQKQ 117
>gnl|CDD|227360 COG5027, SAS2, Histone acetyltransferase (MYST family) [Chromatin
structure and dynamics].
Length = 395
Score = 29.7 bits (67), Expect = 3.3
Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKD-----KKDKDKIKNKEKDKEKKIDKEKEK 131
DL + SI K KK +K +KEK K D ++ E++I + +
Sbjct: 55 DLINLGAAISIPKRKKQTEKGKKEKKPKVSDRMDLDNENVQLEMLYSISNEREIRQLRFG 114
Query: 132 GKKEEKEKKEEKEKKEEK 149
G K + + + K +
Sbjct: 115 GSKVQNPHEGARVKNINE 132
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense
mechanisms].
Length = 733
Score = 29.7 bits (67), Expect = 3.4
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 1/124 (0%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
++ G+I ++ EK + K K ++ +I N + ++D EK
Sbjct: 538 KENGKIYVYNDEERGPYLKYSYEKLEKKLKSLEELPLEIINGDSLLSDEVD-EKINQDIL 596
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
+ + E E K P E + +D L++++ ++ E
Sbjct: 597 RIQDRILSEAIELARLLDLLHKSSPDVLNSIFEYLKFLTDAEEIRDVPLEEKEELDERIE 656
Query: 196 KERS 199
+
Sbjct: 657 SLYN 660
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 29.2 bits (66), Expect = 3.4
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
KE E+++K+ + D +K KEKK + K KK E+E K+ E E+ + ++ E
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKK--RLKSLIKKLEEELKKHIEHNEKTKKRLSE 87
Query: 156 DKEKPVEKIRKEEKDSE 172
+K +E +S
Sbjct: 88 EKSSWFPSKDPDEINSA 104
>gnl|CDD|214660 smart00434, TOP4c, DNA Topoisomerase IV. Bacterial DNA
topoisomerase IV, GyrA, ParC.
Length = 444
Score = 29.5 bits (67), Expect = 3.4
Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 20/90 (22%)
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK------- 182
+ K+ K E + + + + + + KD KE K K ++
Sbjct: 340 TRRKEYLLGKLEAERLHILEGLFIALSIIDEIIVLIRSSKDLAKEAKEKLMERFELSEIQ 399
Query: 183 -------------KLKKEKLKKKKKEKERS 199
KL+ EKL+K+ KE E+
Sbjct: 400 ADAILDMRLRRLTKLEVEKLEKELKELEKE 429
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 29.6 bits (67), Expect = 3.4
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
KE+++++K K K++GK+E + + K +E
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 29.3 bits (66), Expect = 3.4
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK-KEKLKKKKKEKERSSHEKEVIP 207
K+F + E E + + +KK + + KK K E+LK +K+ ++ EK
Sbjct: 66 KDFLSDQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEK---- 121
Query: 208 KLTFKFGTDMEEK 220
+L+ T + E+
Sbjct: 122 QLSSSLQTKLTEE 134
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 29.4 bits (66), Expect = 3.5
Identities = 11/47 (23%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
K + + K+K + +++ ++K +K+ +E +E+ +K EK + K
Sbjct: 11 KLAEKQAKSKLQQ----LERARDKQEKKAEEYQEQIKKAIEKAEEAK 53
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 29.4 bits (66), Expect = 3.5
Identities = 21/79 (26%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E++K +S+++ K+K +E K+ D K ++ + +E ++ K++ + K E K
Sbjct: 13 ELRKAQSLEE----LKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSK 68
Query: 140 KEEKEKKEEKEFKMKEDKE 158
K++K KKE+ + ++K K+
Sbjct: 69 KKKKFKKEKVDVRVKVVKK 87
Score = 27.9 bits (62), Expect = 8.9
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
E+ K K EE +K+ K ++ +K+ E +E ++K + E+ +E KK KK KKE
Sbjct: 21 EELKQKYEEAQKQIADGKTLKRLYKVYEKREFELKKQQFEQLKAELSKKK----KKFKKE 76
Query: 188 KLKKKKK 194
K+ + K
Sbjct: 77 KVDVRVK 83
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 29.3 bits (66), Expect = 3.6
Identities = 19/93 (20%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 57 DVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKN 116
D +L V P++ +V T + L E+ +++ + + ++ ++ + + ++ + + +++
Sbjct: 124 DFDLEVEPILEVLVGKTLEQALLEVLEEEELAELRQ---QQRQFEQRRNAELAETQRLE- 179
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
+ E++ +EKE+ KK++KE+K+ +++ EK
Sbjct: 180 ---EAERRRREEKERRKKQDKERKQREKETAEK 209
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific
eukaryotic initiation factor 4B proteins.
Length = 496
Score = 29.7 bits (66), Expect = 3.6
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 118 EKDKE-KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
EK K+ +KID E E + + E +EEK KEE ++ D +K + + +++
Sbjct: 344 EKGKDWRKIDLELEHRRVDRPETEEEKNLKEEIN-LLRVDLKKEEAIAPESKGSGQEQSH 402
Query: 177 SKDKDKKLKKEK 188
+ +KEK
Sbjct: 403 KGLSELIRQKEK 414
>gnl|CDD|220719 pfam10368, YkyA, Putative cell-wall binding lipoprotein. YkyA is a
family of proteins containing a lipoprotein signal and a
hydrolase domain. It is similar to cell wall binding
proteins and might also be recognisable by a host immune
defence system. It is thus likely to belong to pathways
important for pathogenicity.
Length = 205
Score = 28.9 bits (65), Expect = 3.7
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 96 KKEKEKIKKKKDK-----KDKDKIKNKEKD----KEKKIDKEKEKGKKEEKEKKEEKEKK 146
K + E IKK D+ ++K+ KEK+ E++ K+ +K E +K ++K K+
Sbjct: 61 KDDNEAIKKLSDQALANVDKREKLLKKEKESIEKSEEEFKSAKKYIEKIEDKKLKKKAKQ 120
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
K K + + K K+ + EKE KDK L ++L +K K +S +
Sbjct: 121 LVKVMKERYKSYDKLYKAYKKALNLEKELYEYLKDKDLTLKELDEKIKAVNQSYEK 176
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 29.0 bits (65), Expect = 3.8
Identities = 19/70 (27%), Positives = 34/70 (48%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
+DK ++ EK D K + +K D+E + + E+KE KE +EE
Sbjct: 212 QDKNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEE 271
Query: 149 KEFKMKEDKE 158
+E + +E++E
Sbjct: 272 EETEEEEEEE 281
>gnl|CDD|192488 pfam10228, DUF2228, Uncharacterized conserved protein (DUF2228).
This is a family of conserved proteins of approximately
700 residues found from worms to humans.
Length = 253
Score = 28.9 bits (65), Expect = 3.8
Identities = 10/48 (20%), Positives = 24/48 (50%)
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
K+ K K+K + ++K ++ + K + K + +K++KK+
Sbjct: 93 TKKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKK 140
>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 4. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK4
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK4 has a limited tissue distribution. It
is mainly found in the testis, but is also present in
the cerebellum and kidney. It is expressed as multiple
splice variants with different domain architectures. It
is post-translationally palmitoylated and localized in
the membrane. GRK4 polymorphisms are associated with
hypertension and salt sensitivity, as they cause
hyperphosphorylation, desensitization, and
internalization of the dopamine 1 (D1) receptor while
increasing the expression of the angiotensin II type 1
receptor. GRK4 plays a crucial role in the D1 receptor
regulation of sodium excretion and blood pressure.
Length = 285
Score = 29.2 bits (65), Expect = 3.8
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
K++E+ K+EE + ++KED+E+ EK ++ K + +K+ ++L
Sbjct: 203 KRKERVKREEVDRRVKEDQEEYSEKFSEDAKSICRMLLTKNPKERL 248
>gnl|CDD|216568 pfam01555, N6_N4_Mtase, DNA methylase. Members of this family are
DNA methylases. The family contains both N-4
cytosine-specific DNA methylases and N-6
Adenine-specific DNA methylases.
Length = 219
Score = 28.9 bits (65), Expect = 3.8
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 1/64 (1%)
Query: 103 KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVE 162
K D K+ EKDK KK + GK + + EKE +KP
Sbjct: 109 KYYTFNYDAIKVPYDEKDKLKKRGDSEPNGKPIGDVWDFPRVQPSEKESG-GHPTQKPEA 167
Query: 163 KIRK 166
+ +
Sbjct: 168 LLER 171
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 28.7 bits (65), Expect = 4.0
Identities = 9/73 (12%), Positives = 32/73 (43%)
Query: 106 KDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIR 165
++ K K + + E+ +K+ +++ + K + K +++++ + ++ + +
Sbjct: 104 EEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSD 163
Query: 166 KEEKDSEKEKKSK 178
E + K K
Sbjct: 164 ISELTVGQAVKVK 176
>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein
[Intracellular trafficking and secretion].
Length = 2552
Score = 29.5 bits (66), Expect = 4.0
Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 103 KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVE 162
K +K K + K KEK ++ K E++ K FK + + +
Sbjct: 304 VVMKQQKFL-KYRPKSTPKEKPLEWFKYIILVVLDSIHEKRYHWTWKYFKERCEDRRAYM 362
Query: 163 KI-RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
KI RK+ + + S D K+L+K +L +
Sbjct: 363 KIIRKKYLNEQ---LSADLSKELEKRELTYDLIKYR 395
>gnl|CDD|237147 PRK12586, PRK12586, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 145
Score = 28.2 bits (63), Expect = 4.1
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEK-KEEKEKKEEK 149
KN + E+ E + +++E+ +K
Sbjct: 105 KNDAHTHASILLSSNEQNSTEALQLRAKKREEHRKK 140
>gnl|CDD|234655 PRK00133, metG, methionyl-tRNA synthetase; Reviewed.
Length = 673
Score = 29.3 bits (67), Expect = 4.1
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
+K+I+ E K+ K + +
Sbjct: 532 DKQIEALIEASKEAAAAKAAAAAAAAPLAEEPIAET 567
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 29.6 bits (66), Expect = 4.2
Identities = 15/82 (18%), Positives = 37/82 (45%)
Query: 103 KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVE 162
++ + KD I + +K + +K E E + +E + E+E + ED+ +
Sbjct: 341 WGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSK 400
Query: 163 KIRKEEKDSEKEKKSKDKDKKL 184
+I +++ + + +K+ L
Sbjct: 401 RICDDDELENHFRAADEKNSHL 422
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 28.0 bits (63), Expect = 4.2
Identities = 18/62 (29%), Positives = 40/62 (64%), Gaps = 1/62 (1%)
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
K +KE +KE+K+ + + K++ + + E+ E+ +K K + +K +++K K+++KEK
Sbjct: 70 KVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEK-RTRKNREKKFKRRQKEK 128
Query: 197 ER 198
E+
Sbjct: 129 EK 130
Score = 27.2 bits (61), Expect = 8.5
Identities = 18/65 (27%), Positives = 37/65 (56%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
KK + K EKE +++K+ KK + + K + + + ++ ++EK ++ +EKK ++
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Query: 151 FKMKE 155
K KE
Sbjct: 125 QKEKE 129
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 29.1 bits (65), Expect = 4.2
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 12/139 (8%)
Query: 14 PPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVT 73
PP P K + V T E +S + E EL +VT
Sbjct: 157 PPVPDMPKKQELPVEETLST-IHEDDASTLHEDDELDEEVTSYLNELDD--------EVT 207
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKD---KIKNKEKDKEKKIDKEKE 130
S + GE +++ + + K+ E + K+K ++ +K E +I+ E E
Sbjct: 208 SYFNDGENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESE 267
Query: 131 KGKKEEKEKKEEKEKKEEK 149
+EE +++E E K E+
Sbjct: 268 DEYEEEAGEEQENEDKGEE 286
Score = 29.1 bits (65), Expect = 4.4
Identities = 15/122 (12%), Positives = 49/122 (40%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
K++ +++ T + + + + + ++ E D E + ++ + E +
Sbjct: 165 KQELPVEETLSTIHEDDASTLHEDDELDEEVTSYLNELDDEVTSYFNDGENEENDDELEA 224
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
E + E KEK + R+ + D +++ +D+ + + + ++++
Sbjct: 225 EVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKG 284
Query: 202 EK 203
E+
Sbjct: 285 EE 286
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 29.3 bits (66), Expect = 4.3
Identities = 11/90 (12%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
++ + K++ + K+ ++I+ + +++I++++E+ ++ ++ + +
Sbjct: 51 TNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSS 110
Query: 149 KEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
+++++ + +EK+ +D K +SK
Sbjct: 111 ASYQLEKRRASQLEKL----QDEIKRTRSK 136
Score = 28.5 bits (64), Expect = 6.4
Identities = 13/95 (13%), Positives = 40/95 (42%), Gaps = 2/95 (2%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE 130
KV + + + K K ++KE++ + + + ++K + + K ++I++ K
Sbjct: 42 KVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRAR--ISQLKEEIEQKRERIEELKR 99
Query: 131 KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIR 165
+ + + E++ E + +++ R
Sbjct: 100 ALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTR 134
>gnl|CDD|153365 cd07681, F-BAR_PACSIN3, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Protein kinase C and
Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR
domains are dimerization modules that bind and bend
membranes and are found in proteins involved in membrane
dynamics and actin reorganization. Protein kinase C and
Casein kinase Substrate in Neurons (PACSIN) proteins,
also called Synaptic dynamin-associated proteins
(Syndapins), act as regulators of cytoskeletal and
membrane dynamics. Vetebrates harbor three isoforms with
distinct expression patterns and specific functions.
PACSIN 3 or Syndapin III is expressed ubiquitously and
regulates glucose uptake in adipocytes through its role
in GLUT1 trafficking. It also modulates the subcellular
localization and stimulus-specific function of the
cation channel TRPV4. PACSIN 3 contains an N-terminal
F-BAR domain and a C-terminal SH3 domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 258
Score = 29.1 bits (65), Expect = 4.3
Identities = 22/96 (22%), Positives = 46/96 (47%)
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
+D +K++ +K+ K + KE +E + +K K+ K E +K RK+E
Sbjct: 90 EDSEKVRAWQKEAFHKQMIGGFRESKEAEEGFRKAQKPWVKKLKEVESSKKGYHAARKDE 149
Query: 169 KDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ ++ + D + +E+L+K + E+ + E E
Sbjct: 150 RTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAE 185
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 27.7 bits (62), Expect = 4.3
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKE 150
++EE+E++EE+E++E +E
Sbjct: 72 AAAAEEEEEEEEEEEEEEEESEE 94
Score = 27.7 bits (62), Expect = 4.7
Identities = 8/23 (34%), Positives = 18/23 (78%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKE 150
+ ++EE+E++EE+E++ E+E
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEEE 95
Score = 26.9 bits (60), Expect = 8.3
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 127 KEKEKGKKEEKEKKEEKEKKEE 148
E+ ++EE+E++EE+E+ EE
Sbjct: 73 AAAEEEEEEEEEEEEEEEESEE 94
>gnl|CDD|226475 COG3966, DltD, Protein involved in D-alanine esterification of
lipoteichoic acid and wall teichoic acid (D-alanine
transfer protein) [Cell envelope biogenesis, outer
membrane].
Length = 415
Score = 29.4 bits (66), Expect = 4.3
Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 2/108 (1%)
Query: 94 HKKKEKEKIKKKKDKK--DKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF 151
K+ +K+ KKK DK +K + E+K K + ++ K +F
Sbjct: 180 TLKELLKKLAKKKPLTTADKSGVKLNLQILERKDLLFSATSKSGPLKHIKKALKDLPDQF 239
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
KE ++ VE +K ++ K+K KK+K + K K +K +
Sbjct: 240 SYKELEKLAVEIGKKSTTNNPFGIKNKYYIKKIKPKYKKLKDSQKNFT 287
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly related
to archaeal Holliday junction resolvase [Nucleotide
transport and metabolism].
Length = 175
Score = 28.6 bits (64), Expect = 4.5
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
+ K + K + E+ K E + E + ++E+E+K+KE EK +E+ R++
Sbjct: 28 QGKVESKARELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEARED 78
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 29.3 bits (66), Expect = 4.5
Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 18/136 (13%)
Query: 83 KDKSIKKDKKTHKKKE---KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
D + + + K ++K+ K + D++ D + KE ++ +E +
Sbjct: 730 LDNQLAQLSAAIEAARTQAKARLKELKKQYDREL---ASLDVDPNTVKELKRQIEELETT 786
Query: 140 KEEKEKKEEK--EFK--MKED--------KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
E + + E++ M+E +E+P I+ E +S E+ ++ + +K
Sbjct: 787 IERIAVRRPEVREYRAFMQETWLHRDSLREERPNLAIQLRELESSAEELQQELTRLIKDT 846
Query: 188 KLKKKKKEKERSSHEK 203
KL++KK E+ER + EK
Sbjct: 847 KLRRKKLEQERKALEK 862
Score = 28.9 bits (65), Expect = 5.9
Identities = 16/109 (14%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 99 KEKIKKKKDKKDKDKIKNKEKDKE-KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
+E++++ ++ K K+ +++ + + E E+ K+ E E + ++ +++ ++
Sbjct: 606 RERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQNEQ 665
Query: 158 EKPVEKI---RKEEKDS-EKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
+ +K+ E K E + + D K E+ + + + E
Sbjct: 666 QSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFRE 714
>gnl|CDD|216295 pfam01093, Clusterin, Clusterin.
Length = 434
Score = 29.3 bits (66), Expect = 4.6
Identities = 17/67 (25%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
EK +D+E + K+ K E+ EE+ + +EK +KE++++ K + + +
Sbjct: 11 EKYVDEEVKNALIGVKQMKTLMERTEEEHKNLM----STLEKTKKEKEEALKL--ANEVE 64
Query: 182 KKLKKEK 188
+KL++E+
Sbjct: 65 EKLEEEE 71
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 28.6 bits (64), Expect = 4.6
Identities = 17/72 (23%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
E +K+ + E ++F + +++ EK K + +++LK L+KKK
Sbjct: 44 AELAEKKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLK--ALEKKKA 101
Query: 195 EKERSSHEKEVI 206
E + E+E I
Sbjct: 102 ELKDLEEEREGI 113
Score = 27.8 bits (62), Expect = 9.2
Identities = 15/78 (19%), Positives = 36/78 (46%)
Query: 114 IKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK 173
K + + +K ++ +++ ++ K+ ++ K +EK + E KD E+
Sbjct: 49 KKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEE 108
Query: 174 EKKSKDKDKKLKKEKLKK 191
E++ + K+ + KL K
Sbjct: 109 EREGILRSKQAEDGKLVK 126
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 29.1 bits (65), Expect = 4.6
Identities = 28/152 (18%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
K++E+E+ D K + + +E E+ + E+E++EE+E++EE++
Sbjct: 405 KRQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQ--ES 462
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFG 214
E++E E+ +E + ++ + + + + ++ + R+S +
Sbjct: 463 EEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRM------ 516
Query: 215 TDMEEKTKRESSPKIVIKPVKSPSPPPVAAAD 246
E + R SS P + P P A+
Sbjct: 517 --SEGQQPRGSS-VQPESPQEEPLQPESMDAE 545
>gnl|CDD|112704 pfam03904, DUF334, Domain of unknown function (DUF334).
Staphylococcus aureus plasmid proteins with no
characterized function.
Length = 229
Score = 28.8 bits (64), Expect = 4.6
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 11/116 (9%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
I D+ KK+++ + K+ +K + ++N+E + KK +K K E KE +
Sbjct: 6 IMSDEDEKKNEENMNMQMNSKLTGTHSQKIQKSLENEELQELKKQNKLIIKYIAEIKENQ 65
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKD-SEKEKKSKDKDKKLKKEKLKKKKKE 195
+ +E KE K K ++++ +D +K KK + L +EKLK E
Sbjct: 66 DIRE-KELKAIK---------SELKEATEDFQDKGKKIHNDFVDLLQEKLKHVDAE 111
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 28.7 bits (65), Expect = 4.7
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 131 KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
+ +EK E+E+++ ++ K +E EKI + + E+ + + + L L
Sbjct: 2 SPDETLEEKLNEEEREKLEKKKSSLSEED-KEKIIERGLELEELQSTPEDLSCLPTLTLS 60
Query: 191 KKKKEKERSSHEKEVIPKLT 210
+ + E+E + +
Sbjct: 61 DIPRSGDEYPLEEEKVGDVP 80
Score = 28.7 bits (65), Expect = 4.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 110 DKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
D+ + +++ +K++K+K +E+KEK E+ + E+ ED
Sbjct: 4 DETLEEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTPED 50
>gnl|CDD|240377 PTZ00352, PTZ00352, 60S ribosomal protein L13; Provisional.
Length = 212
Score = 28.5 bits (64), Expect = 4.7
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 3/87 (3%)
Query: 103 KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM-KEDKEKPV 161
K KK KK I ++++ K K + ++ K EK + KE++
Sbjct: 127 KGKKPKKGFAGIPA--DTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNA 184
Query: 162 EKIRKEEKDSEKEKKSKDKDKKLKKEK 188
+ ++ K + K K+K K+ K++K
Sbjct: 185 YRTLRQAKLNAKFVGKKEKKKQAKEKK 211
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 28.9 bits (66), Expect = 4.7
Identities = 17/86 (19%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 99 KEKIKKKKDKKDKDKIK---NKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
KE + K+ D D++ + ++ + ++++ + + KE + K K E+ E + E
Sbjct: 15 KEALAKRGFPLDVDELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAE 74
Query: 156 DKEKPVEKIRKEEKDSEKEKKSKDKD 181
V+++++E K E E + +
Sbjct: 75 -----VKELKEEIKALEAELDELEAE 95
>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This
family is involved in biosynthesis of guanosine
nucleotide. Members of this family contain a TIM barrel
structure. In the inosine monophosphate dehydrogenases 2
CBS domains pfam00571 are inserted in the TIM barrel.
This family is a member of the common phosphate binding
site TIM barrel family.
Length = 467
Score = 29.1 bits (66), Expect = 4.8
Identities = 25/136 (18%), Positives = 45/136 (33%), Gaps = 2/136 (1%)
Query: 51 EYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKD 110
E KVK E G + T+ + E+K+ I T K + + +D
Sbjct: 77 EVRKVKRFESGFITDPVTVSPDTTVAEALELKERYGISGVPVTEDGKLLGGLVGIRTSRD 136
Query: 111 KDKIKNK--EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
D + + + E EE + + K E+ + + + + E
Sbjct: 137 IDFLSKVSVVMTMTEDLVTAPEGITLEEANEILHEHKIEKLPIVDDDGELVGLITRKDIE 196
Query: 169 KDSEKEKKSKDKDKKL 184
K + SKD +L
Sbjct: 197 KARDYPNASKDAQGRL 212
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 29.1 bits (66), Expect = 4.8
Identities = 34/182 (18%), Positives = 66/182 (36%), Gaps = 42/182 (23%)
Query: 22 KMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEI 81
+++ ++ KEK K+K K V G + ++K + +DL +
Sbjct: 380 QLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGK---IYKVLKEATRQDLELL 436
Query: 82 KKD-----KSIKKDKKTHKK-----------------KEKEKIKKKKDKKDKDKIKNKE- 118
K +S+K +K+ + + +I +K DK+ E
Sbjct: 437 KNVWGEILESLKAQRKSLRALLVNSEPVAASEDTVVLAFEYEIHFEKAMLDKELNDTIEN 496
Query: 119 ----------------KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVE 162
+D+ +KI +E + K E+E++EE+E+ + E VE
Sbjct: 497 ILSKLLGKSVEIVAVPEDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKELFGEDLVE 556
Query: 163 KI 164
I
Sbjct: 557 II 558
Score = 28.7 bits (65), Expect = 6.8
Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 32/170 (18%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKG----- 132
L ++K ++ KKKEK+K KKKK K + KI K + + D E K
Sbjct: 385 LKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKI-YKVLKEATRQDLELLKNVWGEI 443
Query: 133 ----KKEEKE-----KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD--------SEKEK 175
K + K E E + + E EK +++ S+
Sbjct: 444 LESLKAQRKSLRALLVNSEPVAASEDTVVLAFEYEIHFEKAMLDKELNDTIENILSKLLG 503
Query: 176 KS-------KDKDKKLKKEKLKKKKKEKERSSHE--KEVIPKLTFKFGTD 216
KS +D+ +K+++E L+K K E+E E +IP+ FG D
Sbjct: 504 KSVEIVAVPEDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKELFGED 553
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 29.3 bits (66), Expect = 4.8
Identities = 19/85 (22%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
K E+ K+ K+ I + ++K + ++ G + ++E K+E KK +K +
Sbjct: 449 LKSLEEFKQSIVKEAALSILEEIREKVLEQAEQ---GCENQEEVKKEVPKKVKKI--PEV 503
Query: 156 DKEKPVEKIRKEEKDSEKEKKSKDK 180
D +E++ E+ EK + K
Sbjct: 504 DTYLLLEELGINEETYEKLEALLAK 528
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 28.6 bits (64), Expect = 5.0
Identities = 20/91 (21%), Positives = 44/91 (48%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
++K K + ++EE+ ++EE++ EEK+ + + P+++++ + K
Sbjct: 90 EQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMKIPAAGESRLKI 149
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSHEKEVIP 207
KD K + +K KK+ + E+IP
Sbjct: 150 RKDYVPSGNKPRAEKPKKKMIKCPITGELIP 180
>gnl|CDD|227577 COG5252, COG5252, Uncharacterized conserved protein, contains
CCCH-type Zn-finger protein [General function prediction
only].
Length = 299
Score = 28.9 bits (64), Expect = 5.1
Identities = 24/133 (18%), Positives = 58/133 (43%), Gaps = 1/133 (0%)
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK-PVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
K++ + +K ++ +++ E+K F +K V+ I K+ + +++ + K+K +E
Sbjct: 8 KKQQESGKKATRDMRKELEDKTFGLKNKNRSTKVQAIIKQIETLNLKEQLEKKEKMRMEE 67
Query: 188 KLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADE 247
K ++ +K+ R+ + + + F T + + + K + + P E
Sbjct: 68 KRREPEKQVIRAGVDPKTVVCALFLNKTCAKGDACKFAHGKEEARKTEKPDLYSDVRDKE 127
Query: 248 YDTGDSKQVWICP 260
D K+ WI
Sbjct: 128 EDVPLGKRPWINT 140
>gnl|CDD|233582 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This model
represents the succinate dehydrogenase flavoprotein
subunit as found in Gram-negative bacteria,
mitochondria, and some Archaea. Mitochondrial forms
interact with ubiquinone and are designated EC 1.3.5.1,
but can be degraded to 1.3.99.1. Some isozymes in E.
coli and other species run primarily in the opposite
direction and are designated fumarate reductase [Energy
metabolism, Aerobic, Energy metabolism, Anaerobic,
Energy metabolism, TCA cycle].
Length = 541
Score = 28.8 bits (65), Expect = 5.2
Identities = 12/64 (18%), Positives = 34/64 (53%)
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
E++ K ++ + ++ + + V KIR+E D+ + + ++L K+ + + ++ +E
Sbjct: 388 EEEAVKAEEALIDLLVERNGGERVAKIREELGDTMDDNVGIFRTEELLKKAVDEIEELRE 447
Query: 198 RSSH 201
R +
Sbjct: 448 RYKN 451
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 28.5 bits (64), Expect = 5.3
Identities = 19/109 (17%), Positives = 48/109 (44%), Gaps = 2/109 (1%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
+ E E+ ++ K ++K+ ++ DK +D E + +++E + ++++ EE
Sbjct: 60 RAELEEAERAHKSKKENKLAIEDADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNS-- 117
Query: 156 DKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
D + + D + + + + +L+K KKE+ +E
Sbjct: 118 DADDSDSSSDSDSSDDDSDDDDSEDETAALLRELEKIKKERAEEKEREE 166
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 28.5 bits (64), Expect = 5.4
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK-----KEEKEKKEEKEKKEEKE 150
+ K ++ K + + + ++ + + K ++ K E K
Sbjct: 26 AELKLRLDKDALLAGLEDALALVQKEAALEALQRAEQRLQQAAKAKRAKDAAANAAEGKA 85
Query: 151 FKMKEDKEKPVEK 163
F K KEK V+
Sbjct: 86 FLEKNAKEKGVKT 98
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 28.3 bits (64), Expect = 5.4
Identities = 24/103 (23%), Positives = 66/103 (64%), Gaps = 9/103 (8%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKI-DKEKEKGKKEEK-EKKEEKEKKEEKEFKM 153
KKE E +KK+ + K++I + E+++ ++ E ++E++ +KEE ++++
Sbjct: 44 KKEAEALKKEALLEAKEEIHKLRAEAERELKERRNELQRQEKRLLQKEETLDRKDESL-- 101
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
E KE+ +E+ KE++ + ++++ ++K+++L E+L ++++++
Sbjct: 102 -EKKEESLEE--KEKELAARQQQLEEKEEEL--EELIEEQQQE 139
Score = 28.3 bits (64), Expect = 6.7
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 122 EKKIDKEKEKGKK-EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 180
E KI +E+ K+ E+ KKE + K+E + KE+ K + +E K+ E + ++K
Sbjct: 26 EAKISSAEEEAKQIIEEAKKEAEALKKEALLEAKEEIHKLRAEAERELKERRNELQRQEK 85
Query: 181 DKKLKKEKLKKK-----KKEKERSSHEKEV 205
K+E L +K KKE+ EKE+
Sbjct: 86 RLLQKEETLDRKDESLEKKEESLEEKEKEL 115
>gnl|CDD|152940 pfam12506, DUF3713, Protein of unknown function (DUF3713). This
family of proteins is found in bacteria. Proteins in
this family are typically between 92 and 1225 amino
acids in length. There is a single completely conserved
residue S that may be functionally important.
Length = 116
Score = 27.5 bits (61), Expect = 5.5
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
I K+K +++ T K K+K K D DK+K+K+ E K + EK K
Sbjct: 10 ITKNKVGQEETNTSSDKSTNKLKTKDA--DVDKLKDKKTKVETKAKELVEKLK 60
>gnl|CDD|218754 pfam05795, Plasmodium_Vir, Plasmodium vivax Vir protein. This
family consists of several Vir proteins specific to
Plasmodium vivax. The vir genes are present at about
600-1,000 copies per haploid genome and encode proteins
that are immunovariant in natural infections, indicating
that they may have a functional role in establishing
chronic infection through antigenic variation.
Length = 348
Score = 28.7 bits (64), Expect = 5.5
Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 10/143 (6%)
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKI---------KKKKDKKDKDKIKNKE 118
+I + ++ + K K + +K K K KK K K+K NK
Sbjct: 96 DIWNKINKKNSKKKNKCKPDFNYIDILDEWKKRKDLYDYFENYDKIKKKIKSKNKNCNKY 155
Query: 119 KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIR-KEEKDSEKEKKS 177
K I +K K++ + E + K + + + K+ K E EK K+
Sbjct: 156 CKYLKYIKSLYKKYKEKCCSSNDNNYCPEYFKCDKKYNPKNLLSKLSCKNESKKEKSKEG 215
Query: 178 KDKDKKLKKEKLKKKKKEKERSS 200
+ K E L+++ E E SS
Sbjct: 216 GAAEGDEKLELLEEESSELETSS 238
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 28.2 bits (63), Expect = 5.7
Identities = 39/146 (26%), Positives = 67/146 (45%), Gaps = 15/146 (10%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKI-----------DKEKE 130
KK K+ + K ++K+ K K +KKK + I K DK+K + D
Sbjct: 3 KKKKNRSSNYKVNRKRLKRKDRKKKINIIGNPIIAKNWDKKKTLAQNYKRLGLAADPNTA 62
Query: 131 KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
+ K E K+ + ++DK P++ E DS++E++ + K+L++E +
Sbjct: 63 ARTDLLIQDKPIPELKKGEARIERDDKGNPLD----EPLDSKEEEEKPEVVKQLEEEASE 118
Query: 191 KKKKEKERSSHEKEVIPKLTFKFGTD 216
KK + S E+E I +L K G D
Sbjct: 119 PAKKPRRLSKREEEWIERLVEKHGDD 144
>gnl|CDD|225768 COG3227, LasB, Zinc metalloprotease (elastase) [Amino acid
transport and metabolism].
Length = 507
Score = 28.9 bits (65), Expect = 5.8
Identities = 20/128 (15%), Positives = 35/128 (27%), Gaps = 16/128 (12%)
Query: 17 TPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEK-EYSKVKDVELGVT-----PMVPNIV 70
+K +S K + KE + E + + G T +V +
Sbjct: 35 MKSQIFIKGTLSKKSAPNEKEILQFLENVNADNNLKAISTDTDPNGFTHVRYQQVVNGVP 94
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKE----KEKIKKKKDKKDKDKIKNKEKDKEKKID 126
S + K + +KKK+ KI + I K +
Sbjct: 95 VKGSEVIVHLDKNGVVKAVNGFVNKKKDLPTNTPKISA------EQAIAIARKQFGYERL 148
Query: 127 KEKEKGKK 134
E K +
Sbjct: 149 TESPKAEL 156
>gnl|CDD|130658 TIGR01597, PYST-B, Plasmodium yoelii subtelomeric family PYST-B.
This model represents a paralogous family of Plasmodium
yoelii genes preferentially located in the subtelomeric
regions of the chromosomes. There are no obvious
homologs to these genes in any other organism.
Length = 255
Score = 28.7 bits (64), Expect = 5.8
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 90 DKKTHK-----KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
DKKT K +KE E++KK+ D + D++ + + I K++ E ++ K+ +
Sbjct: 108 DKKTKKLINKLQKELEELKKELDNEMNDELTIQPIHDKIIIKKDENNSVSEHEDFKQLEN 167
Query: 145 KKE--EKEFKMKEDKEKPVEKIRKEEK 169
+K E + + KI+++ K
Sbjct: 168 EKNSSVSEHEEFDIASSDNLKIKRKLK 194
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 29.1 bits (65), Expect = 5.9
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKI 164
+ +EK ++E++E+K+ + K E+E K KE+ K E I
Sbjct: 7 RAREKLEREQRERKQRAKLKLERERKAKEEAAKQREAI 44
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 28.9 bits (65), Expect = 6.0
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 123 KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
K+I KE +K+ +E+++++ K E K+ K E + +E E D K+ + + D
Sbjct: 41 KQIQKEIAALEKKIREQQDQRAKLE-KQLKSLETEIASLEAQLIETADDLKKLRKQIADL 99
Query: 183 KLKKEKLKKKKKEKER 198
+ L+ +++E+ R
Sbjct: 100 NARLNALEVQEREQRR 115
Score = 28.5 bits (64), Expect = 7.1
Identities = 15/121 (12%), Positives = 42/121 (34%), Gaps = 13/121 (10%)
Query: 76 EDLGEIKKDK-SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK-EKKIDKEKEKGK 133
L ++ + I ++ E+ + ++ K +E+ K +++ E
Sbjct: 168 ATLKQLAAVRAEIAAEQAELTTLLSEQ----RAQQAKLAQLLEERKKTLAQLNSELS--- 220
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
+KK E+ + E K E + E + + + + + + ++ +
Sbjct: 221 --ADQKKLEELRANESRLK-NEIASAEAAAAKAREA-AAAAEAAAARARAAEAKRTGETY 276
Query: 194 K 194
K
Sbjct: 277 K 277
>gnl|CDD|221324 pfam11933, DUF3451, Domain of unknown function (DUF3451). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 199 to 238 amino acids in length. This domain is
found associated with pfam06512, pfam00520. This domain
has a conserved ADD sequence motif.
Length = 222
Score = 28.2 bits (63), Expect = 6.0
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
E K+ + K+ + I EE DSEKE KS+ D + + L +K ++
Sbjct: 9 ESAKERRNRNDKNKKEEHS---------IGSEEGDSEKEPKSESADGRKRCRFLLRKTRK 59
Query: 196 KERSS 200
+S
Sbjct: 60 VSQSL 64
>gnl|CDD|224586 COG1672, COG1672, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 359
Score = 28.6 bits (64), Expect = 6.1
Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 8/107 (7%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ K +++ ++ ++ + K K + K +E I + + K K E +
Sbjct: 256 NLSLIKDLEEYLGKLLEEAARELLSELSKLKKRIGRWWYKLEEIDIVESELKLFKIEVKW 315
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
K+ K++ +E F +K + I E + + DK +K+
Sbjct: 316 KDLKKEAKEVLFLLK-KNILFLNPI-------EGKPQYGLVDKAIKE 354
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 28.7 bits (65), Expect = 6.1
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 19/103 (18%)
Query: 95 KKKEKEKIKKKKDKKDK-DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM 153
KK I+ D +++K K K+ + +K K +
Sbjct: 10 AKKGIAAIELASDLLKALEELKVKYLGKKGVLTDLLKKLGK------------------L 51
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+E+ E E E + +L+ L ++ +
Sbjct: 52 SPLEERKEVGALINELKKEVEDAITELTPELEAAGLWERLAFE 94
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 28.8 bits (64), Expect = 6.2
Identities = 30/167 (17%), Positives = 68/167 (40%), Gaps = 23/167 (13%)
Query: 118 EKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE-KEKK 176
+KD+ +K+ E K E+ ++E+ + ++ +++ EK +++ E E E +
Sbjct: 369 DKDRIQKLSAELLK-----LEEWLQEERSQREKLEVELGIEKDCNRVQLSENRRELSELR 423
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKS 236
S + + +KE+L+++K+E + I L + + +EK +++
Sbjct: 424 SALRVLQKEKEQLQEEKQELL------DYIRVLELRLDKEADEKWAEDAA----TCEDAK 473
Query: 237 PSPPPVAAADEYDTGD-------SKQVWICPACGVQDDGSLPMIGCD 276
A D D+ D S ++ Q + S P +
Sbjct: 474 SYLHRAAYIDLLDSIDESPLDESSSELSPSALDEEQHNESTPKNPKE 520
>gnl|CDD|191973 pfam08232, Striatin, Striatin family. Striatin is an intracellular
protein which has a caveolin-binding motif, a
coiled-coil structure, a calmodulin-binding site, and a
WD (pfam00400) repeat domain. It acts as a scaffold
protein and is involved in signalling pathways.
Length = 133
Score = 27.7 bits (62), Expect = 6.3
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
GE + +++K+D K K + +K+++ K K K K K ++E+E + +++E
Sbjct: 39 GERRGLENLKEDLKRRIKMLEYALKQERAKLKKLKYGTDSPQKPSKEEEEEELEEDDDEE 98
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKI 164
EK + E + K + K +++I
Sbjct: 99 SNSEKVDESELK-KSRLYLRKSLQEI 123
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 28.6 bits (64), Expect = 6.3
Identities = 22/100 (22%), Positives = 46/100 (46%), Gaps = 1/100 (1%)
Query: 99 KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKE 158
+KI ++D D+++ K+K + + + ++EE+E++EE+ + E +
Sbjct: 371 YDKIATEEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGF 430
Query: 159 KPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ E K K+ K+ EK+ K+ EKE+
Sbjct: 431 EVPEMPMPAAGGGGGIKIVL-KNAKITAEKVIIKRAEKEK 469
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 28.3 bits (63), Expect = 6.3
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
E KEK EE +K++E+ K E+ E E++++ K E E ++ K ++ KK
Sbjct: 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198
Query: 195 EKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIV 230
+ E+ + +D+ ++T + I
Sbjct: 199 RWDELEPGVELPEEELI---SDLVKETLNLAPKDIE 231
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 28.9 bits (65), Expect = 6.4
Identities = 18/88 (20%), Positives = 50/88 (56%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
E+ + + D E+E + EE+ ++ E + E + E++ + +E++ E +++ +EK+
Sbjct: 477 VEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKR 536
Query: 177 SKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ ++ + + +L+ + +EK ++ E E
Sbjct: 537 ERAEELRERAAELEAEAEEKREAAAEAE 564
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 28.7 bits (64), Expect = 6.4
Identities = 29/166 (17%), Positives = 51/166 (30%), Gaps = 12/166 (7%)
Query: 3 QHPLIPQPLVHPPGTPPPSK-MKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELG 61
Q P+ + P TP K +P + + K EL
Sbjct: 269 QTPMPERSWQTPAQTPARRISTPMTEEIKSWQTPLQTPAMYSSDYQAPKPEPIYTWEELL 328
Query: 62 VTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK 121
DL I + K K ++ + ++++
Sbjct: 329 RERF---------PSDLFAISSLPDSDSEASDSGPTRKRKRRRVPPLPEYSSDEDEDDSD 379
Query: 122 EKKIDKEKE--KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIR 165
E ++D EKE + ++E+K K + K + E EK V+ R
Sbjct: 380 EDEVDYEKERKRRREEDKNFLRLKALELSKYAGVNERMEKIVQVTR 425
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 28.2 bits (63), Expect = 6.5
Identities = 23/68 (33%), Positives = 35/68 (51%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
KKT KKK+ KKK KK K K K KE+ E ++ + + EE +KK + E + +
Sbjct: 48 KKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQN 107
Query: 151 FKMKEDKE 158
+ + E
Sbjct: 108 TAAEVNHE 115
>gnl|CDD|237554 PRK13909, PRK13909, putative recombination protein RecB;
Provisional.
Length = 910
Score = 28.8 bits (65), Expect = 6.5
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query: 102 IKKKKDKKDKDKIKNKEKDKEKKI-DKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKP 160
+KK + +I + + + +I KE + K+E K K + ++KE +E+P
Sbjct: 699 VKKDESSGSMFEILDLKPLERGEIEIKEPKISPKKESLITSVKLKPHGYQEQVKEIEEEP 758
Query: 161 VE 162
E
Sbjct: 759 KE 760
Score = 28.8 bits (65), Expect = 7.2
Identities = 25/106 (23%), Positives = 42/106 (39%), Gaps = 26/106 (24%)
Query: 90 DKKTHKKKEKEKIKKKKD-------------------KKDKDKIKNKEKDKEKKID-KEK 129
DK + EKEK K ++ KKD+ E +D K
Sbjct: 663 DKDYARALEKEKALKYEEEINVLYVAFTRAKNSLIVVKKDESSGSMFE-----ILDLKPL 717
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
E+G+ E KE K KKE +K E++++ E++ +++
Sbjct: 718 ERGEIEIKEPKISP-KKESLITSVKLKPHGYQEQVKEIEEEPKEDN 762
>gnl|CDD|129262 TIGR00158, L9, ribosomal protein L9. Ribosomal protein L9 appears
to be universal in, but restricted to, eubacteria and
chloroplast [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 148
Score = 27.7 bits (62), Expect = 6.6
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 102 IKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE-DKEKP 160
I K K + + KK+ +EK K + +E + K D+ K
Sbjct: 31 IPKGLAVPATKKNIEFFEARRKKL-EEKLAANKAAAARLKEVLELGTLTISKKVGDEGKL 89
Query: 161 VEKIRKEEKDSEKEKKSKDKDKK 183
I ++ + D DKK
Sbjct: 90 FGSITTKQIADALKAAGLDLDKK 112
>gnl|CDD|201540 pfam00992, Troponin, Troponin. Troponin (Tn) contains three
subunits, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). this Pfam contains members of
the TnT subunit. Troponin is a complex of three
proteins, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). The troponin complex
regulates Ca++ induced muscle contraction. This family
includes troponin T and troponin I. Troponin I binds to
actin and troponin T binds to tropomyosin.
Length = 131
Score = 27.5 bits (62), Expect = 6.8
Identities = 23/115 (20%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
+ +KKE+EK K ++ ++ + ++ K + + ++E+ + +EK +K+
Sbjct: 17 EFEQRKKEEEKEKYLAERCPPLRLSLSRAELQELCKKLHARIDRLDEERYDIEEKVAKKD 76
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 205
++++ K+K + K +K + K+ + D LK K K + ++ K+V
Sbjct: 77 KEIEDLKKKVNDLRGKFKKPTLKKVRKSA-DAMLKALLGSKHKVSMDLRANLKQV 130
>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain
of Ustilago maydis Rim23 (PalC), and related domains.
This family contains the Bro1-like domain of Ustilago
maydis Rim23 (also known as PalC), and related proteins.
It belongs to the BRO1_Alix_like superfamily which
includes the Bro1-like domains of mammalian Alix
(apoptosis-linked gene-2 interacting protein X),
His-Domain type N23 protein tyrosine phosphatase
(HD-PTP, also known as PTPN23), RhoA-binding proteins
Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, and related
domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23
interact with the ESCRT (Endosomal Sorting Complexes
Required for Transport) system. Rim20 and Rim23
participate in the response to the external pH via the
Rim101 pathway. Through its Bro1-like domain, Rim23
allows the interaction between the endosomal and plasma
membrane complexes. Bro1-like domains are
boomerang-shape, and part of the domain is a
tetratricopeptide repeat (TPR)-like structure.
Intermediates in the Rim101 pathway may play roles in
the pathogenesis of fungal corneal infection during
Candida albicans keratitis. This family lacks the
V-shaped (V) domain found in many members of the
BRO1_Alix_like superfamily.
Length = 413
Score = 28.5 bits (64), Expect = 6.8
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK--EKEKGKKEEKEKKEEKEKKEEK 149
KKE E +K K K+K + KEK+ D+ EK G +EE E KK +K
Sbjct: 323 KKELEDLKSPSGVASKAKLK--KSWKEKREDRKVEKGAGVEEELRTLEMLLKKYKK 376
>gnl|CDD|216689 pfam01765, RRF, Ribosome recycling factor. The ribosome recycling
factor (RRF / ribosome release factor) dissociates the
ribosome from the mRNA after termination of translation,
and is essential bacterial growth. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis.
Length = 165
Score = 27.8 bits (63), Expect = 6.8
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 16/98 (16%)
Query: 60 LGVTPMV-PNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKI-----------KKKKD 107
LG+ P ++++ E +K+ K+ K E+ K+ K KK
Sbjct: 69 LGLNPQNDGQVIRIPIPPLTEERRKELV----KQAKKLAEEAKVAIRNIRRDANDKLKKL 124
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK 145
+KDK+ +++ K EK+I K +K K+ E ++KEK
Sbjct: 125 EKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEK 162
Score = 27.5 bits (62), Expect = 8.9
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD 120
+ L +++KDK I +D+ +KE +K+ K KK + +K KEK+
Sbjct: 119 DKLKKLEKDKEISEDEVKRAEKEIQKLTDKYIKKIDELLKKKEKE 163
>gnl|CDD|241381 cd13227, PH-like_Vps36_GLUE, Vps36 GLUE (GRAM-like
ubiquitin-binding in Eap45) Pleckstrin homology-like
domain. ESCRT complexes form the main machinery driving
protein sorting from endosomes to lysosomes. Yeast/human
ESCRT-I consists of Vps23/Tsg101, Vps28/Vps28, and
Vps37/Vps37 homolog. Yeast/human ESCRT-II is composed of
Vps25/EAP20, Vps22/EAP30, and Vps36/EAP45. Yeast
ESCRT-III consists Vps2, Vps20, Vps24, and Snf7
subunits. In contrast, there are three human paralogs of
Snf7 (hSnf7-1/CHMP4A, hSnf7-2/CHMP4B, and
hSnf7-3/CHMP4C) and two paralogs of Vps2 (CHMP2A and
CHMP2B). Yeast ESCRT-I links directly to ESCRT-II,
through a tight interaction of Vps28 (ESCRT-I) with the
yeast-specific zinc-finger insertion within the GLUE
domain of Vps36. The Vps36 subunit (ESCRT-II) binds
ubiquitin using one of its two NZF zinc fingers in its
N-terminal region. Human Vps36, EAP45, also binds
ubiquitin despite having no NZF domain. Instead,
mammalian ESCRT-II interacts with Ub through the Eap45
GLUE domain itself. The yeast Vps36 GLUE has a complete
PH domain, wherease Eap45 GLUE only has a PH-like fold
since it lacks the secondary structure element
corresponding to the 4 strand. ESCRT-II also interacts
with ESCRT-III via a Vps25(EAP20)/Vps20(CHMP6)
interaction. Structure 2CAY is missing this insertion
that contains 2 NZF zinc fingers. It is a split PH
domain, with a noncanonical lipid binding pocket that
binds PI(3)P. The interactions of ESCRT-II GLUE domain
with membranes, ESCRT-I, and ubiquitin are critical for
ubiquitinated cargo progression from early to late
endosomes. PH domains have diverse functions, but in
general are involved in targeting proteins to the
appropriate cellular location or in the interaction with
a binding partner. They share little sequence
conservation, but all have a common fold, which is
electrostatically polarized. Less than 10% of PH domains
bind phosphoinositide phosphates (PIPs) with high
affinity and specificity. PH domains are distinguished
from other PIP-binding domains by their specific
high-affinity binding to PIPs with two vicinal phosphate
groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or PtdIns(3,4,5)P3
which results in targeting some PH domain proteins to
the plasma membrane. A few display strong specificity in
lipid binding. Any specificity is usually determined by
loop regions or insertions in the N-terminus of the
domain, which are not conserved across all PH domains.
PH domains are found in cellular signaling proteins such
as serine/threonine kinase, tyrosine kinases, regulators
of G-proteins, endocytotic GTPases, adaptors, as well as
cytoskeletal associated molecules and in lipid
associated enzymes.
Length = 126
Score = 27.3 bits (61), Expect = 6.8
Identities = 10/43 (23%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 225 SSPKIVIKPVKSPSPPPVAAADEYDTGDSKQV--WICPACGVQ 265
SPKI++ + TG W CP C
Sbjct: 81 RSPKIILFLKDEINSKSGLGQSSNKTGSQNVTSQWTCPICMFT 123
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 28.7 bits (65), Expect = 6.9
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 13/96 (13%)
Query: 98 EKEKIKKKKDKKD-KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKED 156
E+ I + KK +D + + ++ E K EK+ K +KE ++ +K E+ +MKE
Sbjct: 580 EEHGITPQTIKKKIRDILDGEYEEDEYKAKIEKKASKMSKKELEKLIKKLEK---EMKE- 635
Query: 157 KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
+ + E+ + +D+ K+LK+E L K
Sbjct: 636 --------AAKNLEFEEAARLRDEIKELKEELLGKS 663
>gnl|CDD|233728 TIGR02102, pullulan_Gpos, pullulanase, extracellular, Gram-positive.
Pullulan is an unusual, industrially important
polysaccharide in which short alpha-1,4 chains
(maltotriose) are connected in alpha-1,6 linkages.
Enzymes that cleave alpha-1,6 linkages in pullulan and
release maltotriose are called pullulanases although
pullulan itself may not be the natural substrate. In
contrast, a glycogen debranching enzyme such GlgX,
homologous to this family, can release glucose at
alpha,1-6 linkages from glycogen first subjected to limit
degradation by phosphorylase. Characterized members of
this family include a surface-located pullulanase from
Streptococcus pneumoniae (PMID:11083842) and an
extracellular bifunctional amylase/pullulanase with
C-terminal pullulanase activity (PMID:8798645).
Length = 1111
Score = 28.7 bits (64), Expect = 6.9
Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 60 LGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEK 119
L + P+ +V+V E + + ++ + K K D NK+
Sbjct: 992 LKLDPLTAAVVRVGGIEAPEKTPPPPEHEPQAPKPPTQDPDG---SKPKDKVDPKDNKDP 1048
Query: 120 DKEKKIDKEKEKGKKEEKEKKEEKEKKEEK 149
D E + K +EKKEE+ K
Sbjct: 1049 LTPPGSDDENGETPKGNEEKKEEQPDKGAN 1078
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 28.6 bits (64), Expect = 6.9
Identities = 42/167 (25%), Positives = 68/167 (40%), Gaps = 13/167 (7%)
Query: 50 KEYSKVKDVELGVTPMVPNIVKVTSSED-LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDK 108
K Y K K V V I + ED L E+ DK KK + K +K+K
Sbjct: 60 KAYQKAKRVSENVKTPRFYIKTLVMLEDFLNELWADKEAKKKMSKNNAKALNTLKQK--- 116
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
+K K E I + +E + E++E+ EE E ++ +++ E V +
Sbjct: 117 -----VKKNNKQFEDDITRYREDPESEDEEE-EEDEDDDDDGSDDEDEDEDGVGATEEVA 170
Query: 169 KDSE-KEKKSKDKDKKLKKEKLKKKKKEKERSSHEK--EVIPKLTFK 212
SE + K+ D++ + L KK +E +K E+ FK
Sbjct: 171 ASSESGVDRVKEDDEEDEDADLSKKDVLEEPKMFKKPEEITWDDVFK 217
>gnl|CDD|220261 pfam09484, Cas_TM1802, CRISPR-associated protein TM1802
(cas_TM1802). Clusters of short DNA repeats with
non-homologous spacers, which are found at regular
intervals in the genomes of phylogenetically distinct
prokaryotic species, comprise a family with recognisable
features. This family is known as CRISPR (short for
Clustered, Regularly Interspaced Short Palindromic
Repeats). A number of protein families appear only in
association with these repeats and are designated Cas
(CRISPR-Associated) proteins. This minor cas protein is
found in at least five prokaryotic genomes:
Methanosarcina mazei, Sulfurihydrogenibium azorense,
Thermotoga maritima, Carboxydothermus hydrogenoformans,
and Dictyoglomus thermophilum, the first of which is
archaeal while the rest are bacterial.
Length = 584
Score = 28.5 bits (64), Expect = 7.0
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 9/112 (8%)
Query: 69 IVKVTSSEDLGEIKKDKSIKKDKKTHKK----KEKEKIKKKKDKKDKDKIKNKEKDK-EK 123
++K+ + EI+ + DKKT +K + + +KI ++ K
Sbjct: 39 VLKIDFDTEENEIEIVIGEEFDKKTARKYLYKGQAGNGNSSQWYSPTNKITYDPEETLNK 98
Query: 124 KIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
K+ +K K++ E K + K+ K +K EKI K+ D +K +
Sbjct: 99 KLKSIFKKFYKDKGE--INKYRYFLKDIKKVLEKNF--EKIIKDLIDLKKNE 146
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 28.5 bits (64), Expect = 7.0
Identities = 16/70 (22%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 109 KDKDKIKNKEKDKEK--KIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK 166
D+DK++ K+ + +I + ++ +++ KE KE EE + +M+E ++ +E++ +
Sbjct: 30 SDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKEELEELEE 89
Query: 167 EEKDSEKEKK 176
+ ++ E++ K
Sbjct: 90 KIEELEEQLK 99
>gnl|CDD|147685 pfam05663, DUF809, Protein of unknown function (DUF809). This
family consists of several proteins of unknown function
Raphanus sativus (Radish) and Brassica napus (Rape).
Length = 138
Score = 27.4 bits (60), Expect = 7.1
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 100 EKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
+++ KK K +I+ KE+ KE K + E ++ KKE K + E KE+K+E E
Sbjct: 83 DEVTKKVSPIIKGEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVE 133
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 28.7 bits (64), Expect = 7.1
Identities = 23/156 (14%), Positives = 71/156 (45%), Gaps = 2/156 (1%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
+ ++ + + + + K ++ +KK +++ E++ + DK + K + EK+++
Sbjct: 99 AENYERELDRNLELEVRLKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQ 158
Query: 143 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK--EKERSS 200
++ +E ++K D + + + + + + + ++ ++ +E K+ + +K +S
Sbjct: 159 LKEAKESISRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEAEKKLQSL 218
Query: 201 HEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKS 236
++ +EE+ KR V+K +K
Sbjct: 219 TSEQASSADNSVKIKHLEEELKRYEQDAEVVKSMKE 254
Score = 28.4 bits (63), Expect = 8.3
Identities = 24/124 (19%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
+ + L + +++ D K +E++K+ + + K ++ + ++++E +
Sbjct: 211 AEKKLQSLTSEQASSADNSVKIKHLEEELKRYEQDAEVVKSMKEQLLQIPELERELAALR 270
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK--DKKLKKEKLKK 191
+E ++ + MKED E E++ + E+ +K ++K D +L+KEKL+
Sbjct: 271 EENRKLRS-----------MKEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKLEN 319
Query: 192 KKKE 195
+ K
Sbjct: 320 ELKS 323
>gnl|CDD|215591 PLN03124, PLN03124, poly [ADP-ribose] polymerase; Provisional.
Length = 643
Score = 28.7 bits (64), Expect = 7.1
Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 17/161 (10%)
Query: 39 MSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKE 98
M++K K +K G+ + + +ED K + +KK
Sbjct: 1 MANKLKVDELRAALAKRGLDTTGLKAALVRRLDDAIAEDAKTASKSGT---KSSAGRKKR 57
Query: 99 KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE-----KKEEKEFKM 153
+E+ D+ K ID+ K +E +E E+ +K++ ++
Sbjct: 58 RERQDDGDDEPVSPKR--------IAIDEVKGMTVRELREAASERGLATTGRKKDLLERL 109
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
E V K+ E EK+ +++ K+EK+ K
Sbjct: 110 CAALESDV-KVGSANGTGEDEKEKGGDEEREKEEKIVTATK 149
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 28.3 bits (63), Expect = 7.2
Identities = 20/144 (13%), Positives = 63/144 (43%), Gaps = 3/144 (2%)
Query: 62 VTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK 121
V P N +L + + ++ + ++E+EK K+++ K K +
Sbjct: 128 VPPYTRNDFDRREMPELPGVTRSDYDVRELRQKIREEREKEKEEQPM--KPAFKPERWMG 185
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
D+++ +E + E K+++KE + + E+ + ++ + + +E++ +
Sbjct: 186 GPDSDEDENPLDEEAPDMTPETSKQDQKE-ERRAAVERRLAELVEMINWNLEERRRDLRK 244
Query: 182 KKLKKEKLKKKKKEKERSSHEKEV 205
++ +E +++ +++ + E
Sbjct: 245 EQELEENVERDSDDEDEHGEDSED 268
>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion
protein; Provisional.
Length = 311
Score = 28.5 bits (63), Expect = 7.3
Identities = 20/83 (24%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 70 VKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKK--KKDKKDKDKIKNKEKDKEKKIDK 127
+++ S+D+ E +K+ + K KK+ K E K K K++ K +K++ +D
Sbjct: 104 LEIVLSDDVNEREKELAAIKAKKSKKPLPVEPKAKVETKKVAKPSKVEVKPVEKDENVDP 163
Query: 128 EKEKGKKEEKEKKEEKEKKEEKE 150
E K +++ + E+ ++E+E
Sbjct: 164 ELLKREQQVLKVVEKTASQKEEE 186
>gnl|CDD|218601 pfam05477, SURF2, Surfeit locus protein 2 (SURF2). Surfeit locus
protein 2 is part of a group of at least six sequence
unrelated genes (Surf-1 to Surf-6). The six Surfeit
genes have been classified as housekeeping genes, being
expressed in all tissue types tested and not containing
a TATA box in their promoter region. The exact function
of SURF2 is unknown.
Length = 244
Score = 28.3 bits (63), Expect = 7.3
Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKE-----KGKKEEKEKKEE 142
+K ++ +++ + + +K D + D++ ++ K +E
Sbjct: 129 QKQRRREDQEDGVRQPGRTEKSGSDFWEPPSSDEDDSDSEDSMSDLYPPELFTLKNPGKE 188
Query: 143 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ E+ +F+ ++ E VE ++K S+K+ S KK KK KK
Sbjct: 189 QNGDEDDDFETDDEDEMEVESPELQQKRSKKQ--SGSLTKKFKKNHKKKGPFRFSS 242
>gnl|CDD|234537 TIGR04313, aro_clust_Mycop, aromatic cluster surface protein.
Members of this family are absolutely restricted to the
Mollicutes (Mycoplasma and Ureaplasma). All have a
signal peptide, usually of the lipoprotein type,
suggesting surface expression. Most members have lengths
of about 280 residues but some members have a nearly
full-length duplication. The mostly nearly invariant
residue, a Trp,is part of a strongly conserved 9-residue
motif, [ND]-W-[LY]-[WF]-X-[LF]-X-N-[LI], where X usually
is hydrophobic. Because the hydrophobic six-residue core
of this motif almost always contains three to four
aromatic residues, we name this family aromatic cluster
surface protein. Multiple paralogs may occur in a given
Mycoplasma, usually clustered on the genome.
Length = 297
Score = 28.1 bits (63), Expect = 7.3
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 5/73 (6%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE-----KDKEKKIDKEKEKGKKEEKEK 139
+ D K K + + K KKDKK K + NK K + EK K K +K
Sbjct: 26 SQSENDLKKLIKNKFDVKKDKKDKKWKVFLNNKYINNLLNLVFKNDEDEKNKYIKSQKNI 85
Query: 140 KEEKEKKEEKEFK 152
E K K
Sbjct: 86 NSELYLKLLKLSL 98
>gnl|CDD|187859 cd09728, Csx1_III-U, CRISPR/Cas system-associated protein Csx1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Protein of this family often fused to HTH domain; Some
proteins could have an additional fusion with
RecB-family nuclease domain; Core domain appears to have
a Rossmann-like fold; loosely associated with CRISPR/Cas
systems; also known as DxTHG family.
Length = 400
Score = 28.5 bits (64), Expect = 7.5
Identities = 19/111 (17%), Positives = 43/111 (38%), Gaps = 18/111 (16%)
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKI------------- 114
+ ++ + + EI K +K K+ ++ KK + +KI
Sbjct: 184 HEIESETIAPVTEISYLKEKFINKYKDNNKDLKRYFKKALNEGLEKIIKFASALYNGLPL 243
Query: 115 -----KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKP 160
K ++ + ++ + E + E K +E+E K ++E + E+ K
Sbjct: 244 YLLYLKPSIEELREPLEFKLEIIEIIESNKNQEEEIKVKREVYVDENFPKY 294
>gnl|CDD|169428 PRK08404, PRK08404, V-type ATP synthase subunit H; Validated.
Length = 103
Score = 27.1 bits (60), Expect = 7.7
Identities = 25/82 (30%), Positives = 54/82 (65%)
Query: 113 KIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
+I EK+ E++I+K KE+ KK ++ KEE +K EE+ K E++ + + + +K+E + E
Sbjct: 7 EIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEE 66
Query: 173 KEKKSKDKDKKLKKEKLKKKKK 194
+K ++ +K++++ K+K ++
Sbjct: 67 AKKILEEGEKEIEELKVKAEEN 88
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 28.1 bits (63), Expect = 7.7
Identities = 23/96 (23%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 67 PNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIK---NKEKDKEK 123
P V VT+ D KDK ++ + ++ KK D K K + + E+D E+
Sbjct: 227 PQYVIVTTCSD-----KDKGMEIIGAALEAIKEVIKKKGGDFKVKGEPEVVGGDEEDLEE 281
Query: 124 KIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 159
++K +E+ ++++ + E++++++E E + ++D E
Sbjct: 282 LLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEG 317
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 28.3 bits (64), Expect = 7.9
Identities = 16/72 (22%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 84 DKSIKKDKKTHK-KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK--KEEKEKK 140
DK ++ D++ K +E E+++ ++++ K +I K E ++ + K KE+ ++
Sbjct: 29 DKLLELDEERRKLLRELEELQAERNELSK-EIGRALKRGEDDAEELIAEVKELKEKLKEL 87
Query: 141 EEKEKKEEKEFK 152
E + E E
Sbjct: 88 EAALDELEAELD 99
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 28.4 bits (64), Expect = 8.0
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 107 DKKDKDKIKNKEKDKEKKIDKEKEK-GKKEEKEKKEEKEKKEEKEFKMKED 156
K ++D++K K D EK+++ E EK KK EK +KE +E + + +++ +
Sbjct: 283 KKAERDRVKQKRSDLEKRVENELEKLEKKLEKLEKELEEAENAENYRLYGE 333
>gnl|CDD|144261 pfam00603, Flu_PA, Influenza RNA-dependent RNA polymerase subunit
PA.
Length = 669
Score = 28.3 bits (63), Expect = 8.0
Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 14 PPGTPPPSKMK---DKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVT---PMVP 67
P +M+ DK +P++ +MS + K K +++++ + L P P
Sbjct: 188 PLPFSTYEQMRDYCDKFTPREIEPNVSRMSGRVKLPIKHYRWTQMRPIPLLKEPEGPPSP 247
Query: 68 NIVKVTSSEDL------GEIKKDKSIKKDKKTHKKKEKEKIKKKK 106
K+ ++ L ++ I D + E E I+ +
Sbjct: 248 YRAKLLMADALYLTICDPGTDQEGIILIDSTFFSQSEPECIRPSE 292
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 28.7 bits (64), Expect = 8.0
Identities = 35/139 (25%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEK-EKGKKEE 136
L E + K++ + K +K + E KK K+ D+ +IK K + + ++ G + +
Sbjct: 540 LNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDELD 599
Query: 137 KEKKEEKEK-KEEKEFKMKEDKEK---PVEKIRKEEKDSEKEKKSKDKDKKLKK--EKLK 190
+ KE+ EK K+E E ++ + V + K+ KD+ ++ + +K++ E++
Sbjct: 600 DDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEIN 659
Query: 191 KKKKEKERSSHEKEVIPKL 209
KK + RSS K I L
Sbjct: 660 KKIERVIRSSDLKSKIELL 678
>gnl|CDD|232987 TIGR00467, lysS_arch, lysyl-tRNA synthetase, archaeal and
spirochete. This model represents the lysyl-tRNA
synthetases that are class I amino-acyl tRNA
synthetases. It includes archaeal and spirochete
examples of the enzyme. All other known examples are
class IIc amino-acyl tRNA synthetases and seem to form a
separate orthologous set [Protein synthesis, tRNA
aminoacylation].
Length = 515
Score = 28.3 bits (63), Expect = 8.1
Identities = 32/170 (18%), Positives = 64/170 (37%), Gaps = 12/170 (7%)
Query: 37 EKMSSKEKTSPKEKEYSKVKDVELG---VTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKT 93
E+ K +EK+ + + EL + +P V + +I ++ I+K +
Sbjct: 327 ERFYYGVKDKDEEKKRAFKRIYELSQPMPSERIPYQVPFRHLSVISQIFENNDIEKILE- 385
Query: 94 HKKKEKEKIKKKKDKKDKDKIK---NKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
K+ + + +KDK ++ N + + K + K + E EE KK E
Sbjct: 386 ILKRVQYTVDDQKDKLINKRLNCARNWIRKYAPEDFKFSLRSKFDNMEILEENSKKAINE 445
Query: 151 F--KMKEDKEKPVEKIRKEEKDSEKEK--KSKDKDKKLKKEKLKKKKKEK 196
+K++ + +I KE + + + K L K+ K
Sbjct: 446 LAEFLKKN-FEVATEIHNLIYKISKENGIEPALAFQAIYKILLGKEYGPK 494
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 28.4 bits (64), Expect = 8.2
Identities = 17/80 (21%), Positives = 34/80 (42%), Gaps = 6/80 (7%)
Query: 69 IVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKE 128
I VT L +++ + + K+ + K E + K + + + K+ EK++++
Sbjct: 698 IEAVTGEAALEYLQEQEDLLKEIASLLKVPPELLPKVER------LLEELKELEKELERL 751
Query: 129 KEKGKKEEKEKKEEKEKKEE 148
K+K E K EE
Sbjct: 752 KKKLAAAELADLLSNAKAEE 771
>gnl|CDD|234487 TIGR04157, glyco_rSAM_CFB, glycosyltransferase, GG-Bacteroidales
peptide system. Members of this protein family are
predicted glycosyltransferases that occur in conserved
gene neighborhoods in various members of the
Bacteroidales. These neighborhoods feature a radical SAM
enzyme predicted to act in peptide modification (family
TIGR04148), peptides from family TIGR04149 with a
characteristic GG cleavage motif, and several other
proteins.
Length = 406
Score = 28.4 bits (64), Expect = 8.2
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 129 KEKGKKEEKEKKEEKEKKEEKEFKMKEDK----EKPVEKIRKEEKDSEKEKKS------K 178
KE+ K+ E EK ++E + EKE D+ + + + E+ KEK
Sbjct: 144 KEETKRSELEKLIKEEFEREKEMFQLADRVICLSQYTQNLLYEDYGIPKEKIVVIYNGLT 203
Query: 179 DKDKKLKKEKLKKKKK 194
D+ L + + KK +K
Sbjct: 204 DEAIYLSEVERKKLRK 219
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 28.3 bits (63), Expect = 8.6
Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 112 DKIKNKEKD-------KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKI 164
++ NKE D + +I++ EK K+E E E EK+ K+ E + E
Sbjct: 163 LEVLNKEADSLYKPSGRNPQINQLLEKLKQERNEIDEA-EKEYATYHKLLESRRA--EHA 219
Query: 165 RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
R E SE +L + +E ++ E
Sbjct: 220 RLAELRSELRADRDHIRALRDAVELWPRLQEWKQLEQE 257
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 28.1 bits (62), Expect = 8.6
Identities = 12/79 (15%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
+ E++ ++ + + + K K K++ + ++ ++ K EEK+ + ++
Sbjct: 166 QPWPERLHNNVEELLQSSLSLGGSVQVKA-PKPKQEQLLSKLQEYLQEHKTEEKQPQEEQ 224
Query: 156 DKEKPVEKIRKEEKDSEKE 174
++E+ E+ ++EE +
Sbjct: 225 EEEEVEEEAKQEEGQGTDD 243
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 28.5 bits (63), Expect = 8.8
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 106 KDKKDKDKIKNKEK----DKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPV 161
+ ++ K+ IK + D E ++K EK +E E+ +K ++ +E K++E KE
Sbjct: 184 EPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDE 243
Query: 162 EKIRKEEKDSE--KEKKSKDKDKKLKKEKLKKKKKEK 196
K +K +K E KE + ++K K L K KE+
Sbjct: 244 GKKKKTKKVKEVTKEYEVQNKHKPLWTRDPKDVTKEE 280
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 28.5 bits (62), Expect = 8.8
Identities = 31/109 (28%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 93 THKKKEKEKIKKKKDKKDKDKI-KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF 151
T + ++ EK+KK + KK + +I K+ E +++ K EK + + + +++ +EE+
Sbjct: 61 TEQPQQVEKVKKSEKKKAQKQIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHK 120
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
+ K ++E+ ++ K+E D +K + K K+K +K EK +K +K K+ S+
Sbjct: 121 QWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKAST 169
>gnl|CDD|219663 pfam07957, DUF3294, Protein of unknown function (DUF3294). This
family was annotated as mitochondrial Ribosomal protein
MRP8, based on the presumed similarity of the
S.cerevisiae protein to an E.coli mitochondrial
ribosomal protein; however, this similarity is spurious,
and the function is not known [Wood, V].
Length = 217
Score = 27.8 bits (62), Expect = 9.0
Identities = 27/110 (24%), Positives = 50/110 (45%), Gaps = 10/110 (9%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
++SI++ +HKK + + I I NK+ D D K KE K K
Sbjct: 93 ERSIRRTVNSHKKDDDDLI---------APIPNKDGDIPAGSDGVFPKTLKEFKSLDNIK 143
Query: 144 EKKEEKEF-KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
K K + + D+E+ E ++ +++ E + +D+D + + +K KK
Sbjct: 144 LVKLAKFYELLLADQEEFQEFLQGKKEAFHIESEERDEDIEKEIKKYSKK 193
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed.
Length = 417
Score = 28.3 bits (63), Expect = 9.0
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 3/119 (2%)
Query: 30 KDKTSPKEKM-SSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIK 88
+DKT K K+ S+ K + S V+ + P+ S +K
Sbjct: 88 EDKTQVKVKVVSAPTKKKKAMPK-SVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVK 146
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
+K++++ KDK + N EK K K+++ E +K + ++ E+++++
Sbjct: 147 APAPALTPSQKDRLETLLSPKDKISL-NSEKPKFKELESELVSRRKNDLKQMYEEDRED 204
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 27.5 bits (61), Expect = 9.1
Identities = 27/80 (33%), Positives = 42/80 (52%), Gaps = 5/80 (6%)
Query: 104 KKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE-EKEKKEEKEFKMKEDKEKPVE 162
K + ++ D + KE + E+K KE+ +E++E E E E KE+ E K KE EK +
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEKYL- 60
Query: 163 KIRKEEKDSEKEKKSKDKDK 182
+ D E KK ++DK
Sbjct: 61 ---RVHADFENVKKRLERDK 77
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 26.9 bits (60), Expect = 9.4
Identities = 13/33 (39%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
+ +D+EKK+D+E+ K ++ E+ K+ E+EKK+
Sbjct: 95 AQRARDEEKKLDEEEAK-RQHEEAKEREREKKK 126
>gnl|CDD|227468 COG5139, COG5139, Uncharacterized conserved protein [Function
unknown].
Length = 397
Score = 28.1 bits (62), Expect = 9.4
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 15/155 (9%)
Query: 48 KEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKD 107
+ + K VE + K T + + K+++S++ + D
Sbjct: 2 STADQEQPKVVEATPEDGTASSQKSTINAENENTKQNQSMEPQET--------SKGTSND 53
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE---EKEFKMKEDKEKPVEKI 164
KD D N EK++E ID+ E K K + + ++ K + + E +
Sbjct: 54 TKDPD---NGEKNEEAAIDENSNVEAAERKRKHISTDFSDMSLLRKRKNDQSLQPTREPM 110
Query: 165 RKEEKDSE-KEKKSKDKDKKLKKEKLKKKKKEKER 198
+ + E +S + ++ R
Sbjct: 111 DSRDSGQDFTEAQSGELGDTGDRQLKAPAASRARR 145
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 28.2 bits (63), Expect = 9.5
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 106 KDKKDKDKIKNKEKD------KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 159
+K+ K K E+D +I+ + EE+E +EE+E+++E E KE
Sbjct: 356 LNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEH--- 412
Query: 160 PVEKIRKEEKDSEKEKKSKDKDKKL 184
+ EE D E + + D + L
Sbjct: 413 -SDDEEFEEDDVESKYEDSDGNSSL 436
>gnl|CDD|221893 pfam13010, pRN1_helical, Primase helical domain. This alpha
helical domain is found in a set of bacterial plasmid
replication proteins. The domain is found to the
C-terminus of the primase/polymerase domain. Mutants of
this domain are defective in template binding,
dinucleotide formation and conformation change prior to
DNA extension.
Length = 135
Score = 27.1 bits (60), Expect = 9.5
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 132 GKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
GKKEE++ +E+ EK +E+ K K K VE IR E+ +K KKS ++ K+ KK L
Sbjct: 2 GKKEEEDSEEDFEKLKEEMAKYDRFKGKTVEAIR--EEVCKKIKKSLEELKEKKKAILNT 59
Query: 192 KKK 194
K
Sbjct: 60 AKG 62
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 27.4 bits (61), Expect = 9.5
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK---KEEKEFKMKEDKEKPVEKI 164
K D+ K + K EK+I +++ ++ + E E + K + + +KE KE ++I
Sbjct: 102 KDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEAEDKEI 161
Query: 165 RKEEKDSEKEKKS 177
+ + ++ K K+
Sbjct: 162 ARLKSEASKIKQE 174
>gnl|CDD|222859 PHA02535, P, terminase ATPase subunit; Provisional.
Length = 581
Score = 28.1 bits (63), Expect = 9.5
Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
EKE K ++K + + E++ + + S ++ + K K+K K S
Sbjct: 66 EKENKTGGDYKEIDLLIRQHERLARVRRYSGTGNEADLNPNVANRNKGPKRKPVKNDIS- 124
Query: 202 EKEVIPKL 209
E KL
Sbjct: 125 -DEQTEKL 131
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional.
Length = 814
Score = 28.1 bits (62), Expect = 9.6
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
E ++GK EEKE+KEE KK+ ED EKP I + + +E
Sbjct: 30 ESDEGKSEEKEEKEEV-KKDRDNIPEIEDGEKPTSGIEQHQYQTE 73
>gnl|CDD|223542 COG0466, Lon, ATP-dependent Lon protease, bacterial type
[Posttranslational modification, protein turnover,
chaperones].
Length = 782
Score = 28.3 bits (64), Expect = 9.6
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 17/81 (20%)
Query: 122 EKKIDKEKEKGKKEEKEKKE----EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS 177
EK+I K+ ++ + EK ++E E+ K +KE +D + VE++R+
Sbjct: 211 EKRIRKKVKE--QMEKSQREYYLREQLKAIQKELGEDDDDKDEVEELRE----------- 257
Query: 178 KDKDKKLKKEKLKKKKKEKER 198
K + KL KE +K +KE ++
Sbjct: 258 KIEKLKLPKEAKEKAEKELKK 278
>gnl|CDD|131138 TIGR02083, LEU2, 3-isopropylmalate dehydratase, large subunit.
Homoaconitase, aconitase, and 3-isopropylmalate
dehydratase have similar overall structures. All are
dehydratases (EC 4.2.1.-) and bind a Fe-4S iron-sulfur
cluster. 3-isopropylmalate dehydratase is split into
large (leuC) and small (leuD) chains in eubacteria.
Several pairs of archaeal proteins resemble the leuC and
leuD pair in length and sequence but even more closely
resemble the respective domains of homoaconitase, and
their identity is uncertain. These homologs are
described by a separate model of subfamily (rather than
equivalog) homology type (TIGR01343). This model along
with TIGR00170 describe clades which consist only of
LeuC sequences. Here, the genes from Pyrococcus
furiosus, Clostridium acetobutylicum, Thermotoga
maritima and others are gene clustered with related
genes from the leucine biosynthesis pathway [Amino acid
biosynthesis, Pyruvate family].
Length = 419
Score = 28.2 bits (63), Expect = 9.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKP 160
E I+ EK +GK+EEK K +++ K + ++ + +P
Sbjct: 230 EITIEYEKGRGKREEKIYKADEDAKYVRVIEIDLSELEP 268
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 28.1 bits (63), Expect = 9.8
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 6/96 (6%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKK----EEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
K KE ++E+K ++ +EK K+ EK EE K + E K++E++EK +E + K K
Sbjct: 92 KLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVEEEEEKQMEILEKALKS 151
Query: 171 SEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 206
K K+++K L++ +K+ +ER+ E ++I
Sbjct: 152 Y--LKIVKEENKSLQRLAKALQKESEERTQDETKMI 185
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.307 0.128 0.367
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,147,442
Number of extensions: 2001923
Number of successful extensions: 25353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12467
Number of HSP's successfully gapped: 3178
Length of query: 410
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 311
Effective length of database: 6,546,556
Effective search space: 2035978916
Effective search space used: 2035978916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 60 (27.0 bits)