RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5827
(410 letters)
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 76.0 bits (187), Expect = 1e-17
Identities = 35/62 (56%), Positives = 40/62 (64%), Gaps = 2/62 (3%)
Query: 252 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL-VAEPETSDWFCPKCSKVDEGS 310
Q+WICP C DDGS PMIGCD CD WYHW CVG+ A PE WFCPKC+ +
Sbjct: 14 WGNQIWICPGCNKPDDGS-PMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72
Query: 311 RK 312
+K
Sbjct: 73 KK 74
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 72.2 bits (177), Expect = 2e-16
Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 2/62 (3%)
Query: 251 GDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDE 308
G S C ACG I CD C+ W+H CV + + CP CS
Sbjct: 1 GSSGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSG 60
Query: 309 GS 310
S
Sbjct: 61 PS 62
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 64.6 bits (157), Expect = 9e-14
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 258 ICPA--CGVQDDGSLPMIGCDG-CDAWYHWVCVGLVAEP-ETSDWFCPKCS 304
+C A C + + CDG CD W+H VCVG+ E E D+ C C+
Sbjct: 2 VCAAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 62.6 bits (152), Expect = 7e-13
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 244 AADEYDTGDSKQVWI--CPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV-AEPETSDWFC 300
++ W C CG +DD M+ CDGC W+H C+G+ A+ S + C
Sbjct: 2 SSGSSGMERGVDNWKVDCK-CGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLC 60
Query: 301 PKCSK 305
+C +
Sbjct: 61 FRCIE 65
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC,
structural genom type zinc finger, protein binding, zinc
ION binding; 1.85A {Homo sapiens}
Length = 68
Score = 61.8 bits (150), Expect = 1e-12
Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 244 AADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 303
+ + + + C C G PMI C+ C W H C + + C KC
Sbjct: 7 HSSGRENLYFQGLVTCF-CMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKC 64
Query: 304 SK 305
Sbjct: 65 RD 66
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger,
histone-binding, NUC protein; HET: M3L; 1.78A {Homo
sapiens}
Length = 75
Score = 61.5 bits (149), Expect = 2e-12
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 262 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGSRKEKKKRGR 319
C + D + MI CD C W+H CVG+ E P+ + CP C K G KKKR
Sbjct: 15 CRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEK-THGKSTLKKKRTW 73
Query: 320 KK 321
K
Sbjct: 74 HK 75
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain,
nuclear protein, structural structural genomics
consortium, SGC, protein binding; HET: M3L; 1.67A {Homo
sapiens}
Length = 52
Score = 60.5 bits (147), Expect = 2e-12
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 262 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 303
C G PMI C+ C W H C + + C KC
Sbjct: 9 CMKPFAGR-PMIECNECHTWIHLSCAKIRKSNVPEVFVCQKC 49
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein,
signal transduction, transcription, metal BI WNT
proteins; 1.90A {Homo sapiens}
Length = 105
Score = 60.3 bits (145), Expect = 1e-11
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 256 VWICPACGVQDDGSLPMIGCDG-CDAWYHWVCVGL-------VAEPETSDWFCPKCSKVD 307
V+ C AC + + I C+ C W+H C G+ + ++ W C C K
Sbjct: 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62
Query: 308 EGSRKEKKKR 317
EGS +
Sbjct: 63 EGSGSGSGSQ 72
>1wep_A PHF8; structural genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI, DNA binding
protein; NMR {Mus musculus} SCOP: g.50.1.2
Length = 79
Score = 57.3 bits (138), Expect = 5e-11
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 262 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGSRKEKKKRGR 319
C + + MI C C W+H CVG+ E + + CP C V G K
Sbjct: 17 CRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAV-FGPSIMKNWHSG 75
Query: 320 KKK 322
Sbjct: 76 PSS 78
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 62.8 bits (153), Expect = 9e-11
Identities = 14/126 (11%), Positives = 38/126 (30%), Gaps = 7/126 (5%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK----EKEKGKKE 135
++K I K + + + + ++ K K+ E + E +
Sbjct: 887 LLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDL 946
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
+ E ++ E K+ ++ + ++ + E+L+K +
Sbjct: 947 LSILAQLTELNYNGVPELTERKD---TFFAQQWTGVKSSAETYKNTLLAELERLQKIEDL 1003
Query: 196 KERSSH 201
H
Sbjct: 1004 HHHHHH 1009
Score = 59.3 bits (144), Expect = 1e-09
Identities = 10/120 (8%), Positives = 33/120 (27%), Gaps = 3/120 (2%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
L +++ + K + + K+ + + + E + + + +
Sbjct: 893 RILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQ 952
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
E + + ++ K ++ K + ++ K E L
Sbjct: 953 LTELNYNGVPELTERKDTFFAQQW---TGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
Score = 55.1 bits (133), Expect = 3e-08
Identities = 14/130 (10%), Positives = 41/130 (31%), Gaps = 7/130 (5%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKG------KK 134
IK++ + T + + +K +++ + E ++KKI +K +
Sbjct: 840 IKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKKIAVLLQKYNRILKKLE 899
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
K E + ++ + + + + + + D +L +
Sbjct: 900 NWATTKSVYLGSNETG-DSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNY 958
Query: 195 EKERSSHEKE 204
E++
Sbjct: 959 NGVPELTERK 968
Score = 30.4 bits (69), Expect = 1.2
Identities = 11/103 (10%), Positives = 32/103 (31%), Gaps = 9/103 (8%)
Query: 36 KEKMSSKEKTSPKEKEYSKVKDVELGVT-------PMVPNIVKVTSSEDLGEIKKDKSIK 88
+ S E +K+K++E +++ + + +
Sbjct: 906 SVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNGVPELT 965
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEK 131
+ K T ++ +K + + E ++ +KI+
Sbjct: 966 ERKDTFFAQQWTGVKSSAETYKNTLL--AELERLQKIEDLHHH 1006
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 56.5 bits (136), Expect = 9e-11
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)
Query: 243 AAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL------VAEPETS 296
++ + + C + MI CD C+ W+H CVG+ + E
Sbjct: 2 SSGSSGECEVYDPNALYCICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGE 60
Query: 297 DWFCPKCSK 305
D+ CP C+
Sbjct: 61 DYICPNCTI 69
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 62.8 bits (153), Expect = 1e-10
Identities = 30/152 (19%), Positives = 63/152 (41%), Gaps = 5/152 (3%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
K + + + K++ KK K + ++ E+ K+ I E + + + K
Sbjct: 879 ARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKID 938
Query: 140 KEEKEKKEEKEF--KMKEDKEKPVEKIRKEEKD---SEKEKKSKDKDKKLKKEKLKKKKK 194
++ KE K E ++ EK+R + + SE+E K+ +E++ K +K
Sbjct: 939 EQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRK 998
Query: 195 EKERSSHEKEVIPKLTFKFGTDMEEKTKRESS 226
E ++ EK+ I + K+ + E+
Sbjct: 999 ELHQTQTEKKTIEEWADKYKHETEQLVSELKE 1030
Score = 58.2 bits (141), Expect = 2e-09
Identities = 25/137 (18%), Positives = 60/137 (43%), Gaps = 9/137 (6%)
Query: 76 EDLGEIKKDKSIKKDK-KTHKKKEKEKIKKKKDK-----KDKDKIKNKEKDKEKKIDKEK 129
++ + K K + + E EK++ ++ ++ N+ +++I K +
Sbjct: 938 DEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLR 997
Query: 130 EKGKKEEKEKK--EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
++ + + EKK EE K + E + + K + K EK+ E ++ D+ K++ +
Sbjct: 998 KELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE-ELNRRIHDQAKEITET 1056
Query: 188 KLKKKKKEKERSSHEKE 204
KK +E ++ +
Sbjct: 1057 MEKKLVEETKQLELDLN 1073
Score = 57.0 bits (138), Expect = 6e-09
Identities = 24/138 (17%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
S E ++ K + K E+ K K +K + ++ + +K+ + E+ +
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEK-MNNLEITYSTETEKLRSDVERLR 973
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKS-----KDKDKKLKKE- 187
E+E K + + ++ + +++ + + + E+K E+ + +LK++
Sbjct: 974 MSEEEAKNATNRVLSLQEEIAKLRKE-LHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032
Query: 188 -KLKKKKKEKERSSHEKE 204
LK +K+E R H++
Sbjct: 1033 TLLKTEKEELNRRIHDQA 1050
Score = 55.5 bits (134), Expect = 2e-08
Identities = 20/136 (14%), Positives = 48/136 (35%), Gaps = 5/136 (3%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
L K D++ + K + + + + D E+ E+E
Sbjct: 922 LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN 981
Query: 134 KEEKEKKEEKEKKE-----EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
+ ++E + + K+ E+ +K + E + E K ++ K +KE+
Sbjct: 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041
Query: 189 LKKKKKEKERSSHEKE 204
L ++ ++ + E
Sbjct: 1042 LNRRIHDQAKEITETM 1057
Score = 54.0 bits (130), Expect = 7e-08
Identities = 23/126 (18%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
+S+++ KK H E + ++ ++ +++K +K ++ + E+ E+
Sbjct: 914 RSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST-ETEKLRSDVERL 972
Query: 145 KKEEKEFKMKEDKEKPV-EKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
+ E+E K ++ + E+I K K+ + + + K +++ K K + ++ S K
Sbjct: 973 RMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT---EKKTIEEWADKYKHETEQLVSELK 1029
Query: 204 EVIPKL 209
E L
Sbjct: 1030 EQNTLL 1035
Score = 53.6 bits (129), Expect = 8e-08
Identities = 19/125 (15%), Positives = 45/125 (36%), Gaps = 1/125 (0%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ + K K + + K + + + +E +K K E +
Sbjct: 857 KYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSV 916
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
+ K+ E K+ + + K +++ KE K ++ + + + EKL+ + S
Sbjct: 917 ERYKKLHIGLENKIMQLQRK-IDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMS 975
Query: 200 SHEKE 204
E +
Sbjct: 976 EEEAK 980
Score = 51.3 bits (123), Expect = 4e-07
Identities = 17/112 (15%), Positives = 53/112 (47%), Gaps = 1/112 (0%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
E L +++ ++ ++E K++K+ + + K E+ +K + ++ +
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQT-EKKTIEEWADKYKHETEQLVSEL 1028
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
+++ K +KEE ++ + ++ E + K+ + K+ + D++L+ +
Sbjct: 1029 KEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
Score = 45.1 bits (107), Expect = 4e-05
Identities = 19/117 (16%), Positives = 51/117 (43%), Gaps = 8/117 (6%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDK-KDKDKIKNKEKDKEKKIDKEKEKGKKE--- 135
+++ D + + K ++ +++ K ++ + ++K I++ +K K E
Sbjct: 964 KLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQ 1023
Query: 136 --EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
+ K++ K EKE + ++ K E + + +++K + L E+L+
Sbjct: 1024 LVSELKEQNTLLKTEKEELNRRIHDQ--AKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 36.6 bits (85), Expect = 0.014
Identities = 15/139 (10%), Positives = 46/139 (33%), Gaps = 11/139 (7%)
Query: 87 IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
I+K ++ + +++ + + + ++ + ++ + K +K + +
Sbjct: 822 IQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARV 881
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 206
+ + +K + KKLK E ++ +K E +++
Sbjct: 882 HYHRTLKAI----------VYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIM 931
Query: 207 PKLTFKFGTDMEEKTKRES 225
+L K +E
Sbjct: 932 -QLQRKIDEQNKEYKSLLE 949
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway,
WNT signaling complex, chromosomal rearrangement,
signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A
2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 55.9 bits (134), Expect = 1e-10
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 252 DSKQVWICPACGVQDDGSLPMIGCDG-CDAWYHWVCVGL-------VAEPETSDWFCPKC 303
S V+ C C + + I C+ C W+H +C G+ + ++ W C C
Sbjct: 4 SSDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTC 63
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 70
Score = 55.6 bits (134), Expect = 2e-10
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 262 CGVQDDGSLPMIGCDGCD---AWYHWVCVGLVAEPETSDWFCPKCSKVDEGSRKEKKKRG 318
C G M+GCD D W+H+ CVGL P+ W+CP+C+ R + K G
Sbjct: 11 CNQVSYG--EMVGCDNQDCPIEWFHYGCVGLTEAPK-GKWYCPQCTA-AMKRRGSRHKSG 66
Query: 319 RKK 321
Sbjct: 67 PSS 69
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 60.5 bits (145), Expect = 4e-10
Identities = 27/121 (22%), Positives = 38/121 (31%), Gaps = 3/121 (2%)
Query: 216 DMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGC 275
ME+KT +ES A +E K + IGC
Sbjct: 3 HMEQKTPKESDRCGGCGKFTHEDDLI-ALEEEKKKEKEKPLMSKKKSHHHKKNDFQWIGC 61
Query: 276 DGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGSRKEKKKRGRKKKTHQDIIMSTYR 333
D C WYH++C GL +FCPKC S + K + + +
Sbjct: 62 DSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTGHSIRYKVVAPHRYRWYSPNEKHLGI 121
Query: 334 F 334
Sbjct: 122 E 122
Score = 28.1 bits (61), Expect = 6.3
Identities = 17/87 (19%), Positives = 40/87 (45%)
Query: 99 KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKE 158
+ + +K + +++ +E++K + K + E +E + E+ +DK
Sbjct: 442 RNVLLEKITEANQEGSDMREQEKNIWTASQIMKAEMERWMDRELRLGPEKNAILPTDDKN 501
Query: 159 KPVEKIRKEEKDSEKEKKSKDKDKKLK 185
K + +RK+ + K + +K+K LK
Sbjct: 502 KIMISVRKQIEIQTKIQNAKNKPMGLK 528
>3kv5_D JMJC domain-containing histone demethylation protein 1D;
epigenetics, histone CODE, jumonji lysine demethylase,
metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo
sapiens} PDB: 3kv6_A*
Length = 488
Score = 57.0 bits (136), Expect = 6e-09
Identities = 24/166 (14%), Positives = 50/166 (30%), Gaps = 4/166 (2%)
Query: 221 TKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDA 280
+ + + A V+ C C D + MI CD C
Sbjct: 3 GAAAAVAAGAAAGAAAAAVSVAAPGRASAPPPPPPVY-C-VCRQPYDVNRFMIECDICKD 60
Query: 281 WYHWVCVGL--VAEPETSDWFCPKCSKVDEGSRKEKKKRGRKKKTHQDIIMSTYRFERDP 338
W+H CVG+ + + CP C+ + S +K++ + + S
Sbjct: 61 WFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMKKRRNWHRHDYTEIDDGSKPVQAGTR 120
Query: 339 SELVDKSACAGSRADLKLCLLETDCVQVDRKTPRQCLREGLAPQCE 384
+ + + + AD + + + + P+ +
Sbjct: 121 TFIKELRSRVFPSADEIIIKMHGSQLTQRYLEKHGFDVPIMVPKLD 166
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING,
epigenetics, alternative splicing, metal-binding,
phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens}
PDB: 2pnx_A*
Length = 59
Score = 51.0 bits (122), Expect = 6e-09
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
Query: 257 WICPACGVQDDGSLPMIGCDG---CDAWYHWVCVGLVAEPETSDWFCPKCSK 305
C C G MIGCD W+H+ CV L +P+ WFCP+C +
Sbjct: 10 TYCL-CHQVSYGE--MIGCDNPDCPIEWFHFACVDLTTKPK-GKWFCPRCVQ 57
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator,
metal-binding, finger, signaling protein; NMR {Homo
sapiens}
Length = 71
Score = 51.4 bits (123), Expect = 7e-09
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 258 ICPACG-VQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSDWFCPKC 303
+C C + S ++ CD C+ H C G+ PE W C C
Sbjct: 18 VCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEG-QWLCRHC 63
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 55.2 bits (133), Expect = 3e-08
Identities = 26/142 (18%), Positives = 64/142 (45%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
+ +++++ +K + EK+ K + +D+ K+ KE++ ++ +
Sbjct: 962 EQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLA 1021
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
++EEK + + K K I + E +KE+KS+ + +K+K++ + E+ + +
Sbjct: 1022 EEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQA 1081
Query: 205 VIPKLTFKFGTDMEEKTKRESS 226
I +L + EE +
Sbjct: 1082 QIAELKAQLAKKEEELQAALAR 1103
Score = 54.8 bits (132), Expect = 3e-08
Identities = 22/125 (17%), Positives = 59/125 (47%), Gaps = 4/125 (3%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ + ++ + + + +++E+ + + +KK K++ + D E+++++E+ +K + EK
Sbjct: 922 KQELEEILHEMEARIEEEEERSQQLQAEKK---KMQQQMLDLEEQLEEEEAARQKLQLEK 978
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
K ++ E + +++ K+ KE K E+ + ++EK K K K +
Sbjct: 979 VTADGKIKKMEDDILIMEDQ-NNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH 1037
Query: 200 SHEKE 204
Sbjct: 1038 ESMIS 1042
Score = 54.1 bits (130), Expect = 5e-08
Identities = 19/147 (12%), Positives = 75/147 (51%), Gaps = 1/147 (0%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E K + ++ +K + E + ++ + ++ K+++ E+ + + + + ++EE+
Sbjct: 884 EQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERS 943
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
++ + +K++ + +M + +E+ +E+ + + EK + D K ++ + + + +
Sbjct: 944 QQLQAEKKKMQQQMLDLEEQ-LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKL 1002
Query: 200 SHEKEVIPKLTFKFGTDMEEKTKRESS 226
+ E++++ + T++ E+ ++ +
Sbjct: 1003 TKERKLLEERVSDLTTNLAEEEEKAKN 1029
Score = 50.2 bits (120), Expect = 9e-07
Identities = 24/123 (19%), Positives = 57/123 (46%), Gaps = 4/123 (3%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+++++++ ++ + K KIKK +D + +N + KE+K+ +E+ +
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE 1022
Query: 140 KEEKEKKEEKEF----KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
+EEK K K M + E ++K K ++ EK K+ + + E++ + + +
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQ 1082
Query: 196 KER 198
Sbjct: 1083 IAE 1085
Score = 50.2 bits (120), Expect = 9e-07
Identities = 31/147 (21%), Positives = 69/147 (46%), Gaps = 12/147 (8%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
E+ + + + KK+E E+I + + + ++ E+++ +++ EK+K +++ +
Sbjct: 906 ELYAEAEEMRVRLAAKKQELEEILHEMEARIEE-----EEERSQQLQAEKKKMQQQMLDL 960
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
+E+ E++E K++ +K KI+K E D + +K K +K ++
Sbjct: 961 EEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNL 1020
Query: 200 SHEKEVIPKLTFKFGTDMEEKTKRESS 226
+ E+E LT + K K ES
Sbjct: 1021 AEEEEKAKNLT-------KLKNKHESM 1040
Score = 49.8 bits (119), Expect = 1e-06
Identities = 27/120 (22%), Positives = 50/120 (41%), Gaps = 4/120 (3%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
I + + K KE+ ++ D +E++K K + K K K + E E
Sbjct: 990 DDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNK----HESMISELE 1045
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ +KE K +++ EK K+ E D ++ K +L KK++E + + E
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLE 1105
Score = 48.3 bits (115), Expect = 3e-06
Identities = 24/134 (17%), Positives = 62/134 (46%), Gaps = 3/134 (2%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ ++ K+ + K+ +K + +K ++ + E+ + K ++ E+
Sbjct: 870 KERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEIL 929
Query: 140 KEEKEKKEEKE---FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
E + + EE+E +++ +K+K +++ E+ E+E+ ++ K + K K KK +
Sbjct: 930 HEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKME 989
Query: 197 ERSSHEKEVIPKLT 210
+ ++ KLT
Sbjct: 990 DDILIMEDQNNKLT 1003
Score = 48.3 bits (115), Expect = 3e-06
Identities = 25/128 (19%), Positives = 64/128 (50%), Gaps = 4/128 (3%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
I++++ + + KKK ++++ +++ ++++ ++ EK K K +++
Sbjct: 936 IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIM 995
Query: 141 EEKEKKEEKEFK-MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE---KLKKKKKEK 196
E++ K KE K ++E + +EE+ ++ K K+K + + E +LKK++K +
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSR 1055
Query: 197 ERSSHEKE 204
+ K
Sbjct: 1056 QELEKIKR 1063
Score = 47.9 bits (114), Expect = 4e-06
Identities = 27/133 (20%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 73 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKG 132
++L EI + + +++ + ++ + KKK ++ D + E+++ + + EK
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKE-KPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
+ K KK E + ++ K KE K +E+ + + E++ K K+ K K +
Sbjct: 980 TADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHES 1039
Query: 192 KKKEKERSSHEKE 204
E E ++E
Sbjct: 1040 MISELEVRLKKEE 1052
Score = 46.4 bits (110), Expect = 1e-05
Identities = 20/120 (16%), Positives = 64/120 (53%), Gaps = 6/120 (5%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
++T ++++K + + K+ ++ ++ ++ ++K+ E E + E+ + KK+E E
Sbjct: 867 QRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELE 926
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD-----KKLKKEKLKKKKKEKERSSHEKEV 205
+ E + + +E+ + + + EKK + ++L++E+ ++K + E+ + + ++
Sbjct: 927 EILHEMEAR-IEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKI 985
Score = 45.6 bits (108), Expect = 2e-05
Identities = 28/142 (19%), Positives = 63/142 (44%), Gaps = 25/142 (17%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE------ 141
+ + + E+E+ + ++ + +K K++ + D E+++++E+ +K + EK
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIK 986
Query: 142 ----------------EKEKK--EEKEFKMKEDKEKPVEKIRKEEKDSEK-EKKSKDKDK 182
KE+K EE+ + + + EK + K K E + +
Sbjct: 987 KMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046
Query: 183 KLKKEKLKKKKKEKERSSHEKE 204
+LKKE+ +++ EK + E E
Sbjct: 1047 RLKKEEKSRQELEKIKRKLEGE 1068
Score = 45.2 bits (107), Expect = 3e-05
Identities = 22/138 (15%), Positives = 67/138 (48%)
Query: 67 PNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID 126
P + L ++ + + + K ++ KE+ +K + + + + K+ + +EK +
Sbjct: 838 PWMXLFFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLL 897
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
+EK + + E + EE + + + E+ +E +EE++ ++ +++ K + +
Sbjct: 898 QEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQM 957
Query: 187 EKLKKKKKEKERSSHEKE 204
L+++ +E+E + + +
Sbjct: 958 LDLEEQLEEEEAARQKLQ 975
Score = 44.1 bits (104), Expect = 7e-05
Identities = 37/204 (18%), Positives = 89/204 (43%), Gaps = 22/204 (10%)
Query: 22 KMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTS-----SE 76
KM+ ++ ++ +E+ + ++ K K+K +E + M K+T E
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEE 1011
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
+ ++ + + +++K + K K K + + + ++K +EK +++ ++K K K + E
Sbjct: 1012 RVSDLTTNLAEEEEKAKNLTKLKNKHESMISEL-EVRLKKEEKSRQE-LEKIKRKLEGES 1069
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK------------- 183
+ E+ + + + ++K K E+++ E E K+ K
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQ 1129
Query: 184 --LKKEKLKKKKKEKERSSHEKEV 205
L+ EK + K EK++ +E+
Sbjct: 1130 EDLESEKAARNKAEKQKRDLSEEL 1153
Score = 41.0 bits (96), Expect = 6e-04
Identities = 21/120 (17%), Positives = 59/120 (49%), Gaps = 3/120 (2%)
Query: 86 SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK 145
+ K + ++ + + + ++ K+ + K + + K+ E+K + E+ +++ + E E
Sbjct: 848 PLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETEL 907
Query: 146 KEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 205
E E K K EE E E + ++++++ ++ + +KKK +++ E+++
Sbjct: 908 YAEAEEMRVRLAAK---KQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQL 964
Score = 37.5 bits (87), Expect = 0.009
Identities = 18/104 (17%), Positives = 45/104 (43%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
I + K KKE+E +D+ KN K ++++ +++ + +K +
Sbjct: 1081 AQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARN 1140
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
K E+++ + E+ E ++ + +++ + D K +K
Sbjct: 1141 KAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDDK 1184
Score = 37.1 bits (86), Expect = 0.010
Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 3/119 (2%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
GE + + + K ++ KK+++ + ++ E K +E +
Sbjct: 1067 GESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED---ETSQKNNALKKIRELES 1123
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+ ++ E E + EK + +E + + E + ++E K+ +
Sbjct: 1124 HISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDD 1182
Score = 33.7 bits (77), Expect = 0.14
Identities = 16/118 (13%), Positives = 46/118 (38%), Gaps = 8/118 (6%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKK--KDKKDKDKIKNKEKDKEKKIDKEKEKG 132
E + E++ + K + K++E + + + K+ K ++ E I +E
Sbjct: 1073 HEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDL 1132
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
+ E+ + + +++K + +++ K E+ + + + K + K
Sbjct: 1133 ESEKAARNKAEKQKRDLSEELEALKT------ELEDTLDTTATQQELRGSDYKDDDDK 1184
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD
domain, ING1-like protein, DNA binding protein, NPPSFA;
NMR {Mus musculus} SCOP: g.50.1.2
Length = 91
Score = 49.7 bits (118), Expect = 3e-08
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Query: 221 TKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDG--- 277
+ SP+ + V S P D D + C C G MIGCD
Sbjct: 3 SGSSGSPEYGMPSVTFGSVHPSDVLDM--PVDPNEPTYCL-CHQVSYGE--MIGCDNPDC 57
Query: 278 CDAWYHWVCVGLVAEPETSDWFCPKCSK 305
W+H+ CVGL +P WFCP+CS+
Sbjct: 58 SIEWFHFACVGLTTKPR-GKWFCPRCSQ 84
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation,
alternative splicing, anti-oncogene, cell cycle, coiled
C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A
{Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Length = 60
Score = 48.7 bits (116), Expect = 4e-08
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 9/57 (15%)
Query: 252 DSKQVWICPACGVQDDGSLPMIGCDG---CDAWYHWVCVGLVAEPETSDWFCPKCSK 305
+ +C + MIGCD W+H+ CVGL +P WFCP+CS+
Sbjct: 8 NEPTYCLCHQVSYGE-----MIGCDNPDCSIEWFHFACVGLTTKPR-GKWFCPRCSQ 58
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural
genomics, PHD domain, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: g.50.1.2 PDB: 1wes_A
Length = 71
Score = 48.8 bits (116), Expect = 4e-08
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 243 AAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDG---CDAWYHWVCVGLVAEPETSDWF 299
+ + D + C C G MIGCD W+H+ CVGL +P WF
Sbjct: 3 SGSSGDMPVDPNEPTYCL-CHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPR-GKWF 58
Query: 300 CPKCSK 305
CP+CS+
Sbjct: 59 CPRCSQ 64
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 48.5 bits (115), Expect = 9e-08
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 232 KPVKSPSPPPVAAADEYDTGDSKQVWICPACG-VQDDGSLPMIGCDGCDAWYHWVCVGLV 290
+ ++ D V C C + S ++ CD C+ H C G+
Sbjct: 3 TKQTARKSTGGSSGSSQSLIDEDAV--CSICMDGESQNSNVILFCDMCNLAVHQECYGVP 60
Query: 291 AEPETSDWFCPKC 303
PE W C C
Sbjct: 61 YIPEG-QWLCRHC 72
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module,
epigenetic regulation, LI binding protein complex; 1.41A
{Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A
2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Length = 70
Score = 46.3 bits (110), Expect = 3e-07
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 259 CPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSK 305
C CG + D + CD CD +H C+ L + P +W+CP+C
Sbjct: 21 CHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene
regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Length = 62
Score = 46.0 bits (109), Expect = 3e-07
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 245 ADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCD---AWYHWVCVGLVAEPETSDWFCP 301
E+ ++ + C C G MIGCD W+H+ CV L +P+ W+CP
Sbjct: 1 GSEFAIDPNEPTY-CL-CNQVSYGE--MIGCDNEQCPIEWFHFSCVSLTYKPK-GKWYCP 55
Query: 302 KCSKVDE 308
KC +E
Sbjct: 56 KCRGDNE 62
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 49.0 bits (116), Expect = 4e-07
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK----------EEKEKKEEKE 144
+E E I+K ++++ K +++ + + + +EK KK E+ EK +
Sbjct: 80 LTQEPESIRKWREEQRK-RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Query: 145 KKEEKEFKMKEDKE 158
+ +K F + D +
Sbjct: 139 RIADKAFYQQPDAD 152
Score = 45.5 bits (107), Expect = 7e-06
Identities = 11/87 (12%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 121 KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 180
+ ++ +E E +K +E+++ ++ + M+++ +E+ + E+ ++ +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEW--------REKAKKDLEEWNQRQ 127
Query: 181 DKKLKKEKLKKKKKEKE-RSSHEKEVI 206
++++K K+ + +K + ++I
Sbjct: 128 SEQVEKNKINNRIADKAFYQQPDADII 154
Score = 40.9 bits (95), Expect = 2e-04
Identities = 9/58 (15%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 82 KKDKSI-KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
++ K + + D + +++ + K KKD ++ ++ ++++ +K K ++ +K ++ +
Sbjct: 93 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 32.4 bits (73), Expect = 0.14
Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 154 KEDKEKPVEKIRK--EEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPK 208
++P E IRK EE+ ++ ++ + K KK +E + + E + K
Sbjct: 78 DRLTQEP-ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 50.7 bits (121), Expect = 4e-07
Identities = 21/102 (20%), Positives = 39/102 (38%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
+ D D+++ ++ K + K+K K E++ KE +
Sbjct: 7 VAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDE 66
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
++ + +E+D + E D D K+K KKKKK
Sbjct: 67 VARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 35.7 bits (82), Expect = 0.030
Identities = 16/98 (16%), Positives = 41/98 (41%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
D + ++ + ++ KK+ K+K K + + + ++ ++ E+
Sbjct: 17 DLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSAL 76
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
E+KE+ E+ E + K+K +K R + ++
Sbjct: 77 EDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 34.5 bits (79), Expect = 0.055
Identities = 16/116 (13%), Positives = 42/116 (36%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
KK KS ++ +KE + + + E + + D++ + KK+
Sbjct: 41 KKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKK 100
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+K+KK+ + P+ + + ++ + + + +EK+
Sbjct: 101 KKKKKKRGPKVQTDPPSVPICDLYPNGVFPKGQECEYPPTQDGRTAAWRTTSEEKK 156
Score = 29.5 bits (66), Expect = 2.1
Identities = 26/154 (16%), Positives = 51/154 (33%), Gaps = 15/154 (9%)
Query: 17 TPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSE 76
P + + S ++ + K++ K+ P + V ++ ++ E
Sbjct: 18 LDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALE 77
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKK---------------DKDKIKNKEKDK 121
D + D+ D K+K+K KKK+ K + K +E +
Sbjct: 78 DKERDEDDEDGDGDGDGATGKKKKKKKKKRGPKVQTDPPSVPICDLYPNGVFPKGQECEY 137
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
D + +EKK + EE +E
Sbjct: 138 PPTQDGRTAAWRTTSEEKKALDQASEEIWNDFRE 171
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast,
protein binding; NMR {Saccharomyces cerevisiae} PDB:
2jmj_A*
Length = 90
Score = 46.7 bits (110), Expect = 5e-07
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 6/92 (6%)
Query: 233 PVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDG---CDAWYHWVCVGL 289
P+ S + G++ Q + C G M+ CD W+H+ CVGL
Sbjct: 2 PLGSHMASEFINQGDVTEGNNNQEEVYCFCRNVSYGP--MVACDNPACPFEWFHYGCVGL 59
Query: 290 VAEPETSDWFCPKCSKVDEGSRKEKKKRGRKK 321
P+ W+C K K R + K++ R+K
Sbjct: 60 KQAPK-GKWYCSKDCKEIANQRSKSKRQKRRK 90
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 56
Score = 45.4 bits (108), Expect = 6e-07
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 7/59 (11%)
Query: 249 DTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSK 305
+G S C C ++ CD C YH C+ L P+ W CP+C
Sbjct: 2 SSGSSGHEDFCSVCRKSGQ----LLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRCQD 55
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation,
UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo
sapiens}
Length = 77
Score = 46.0 bits (109), Expect = 6e-07
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 259 CPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSK 305
C CG + D + CD CD +H C+ L + P +W+CP+C
Sbjct: 29 CHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 49.0 bits (116), Expect = 6e-07
Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 5/129 (3%)
Query: 179 DKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPS 238
D + K+E ++ + + + + E SP + +
Sbjct: 99 DAEISRKRETRTARELYANVVLGDDSLNDCRIIFVDEVFKIERPGEGSPMVDNPMRRKSG 158
Query: 239 PPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETS 296
P D+ + +V C CG + D + CD CD +H C+ L + P
Sbjct: 159 PSCKHCKDDVN--RLCRVCACHLCGGRQDPDK-QLMCDECDMAFHIYCLDPPLSSVPSED 215
Query: 297 DWFCPKCSK 305
+W+CP+C
Sbjct: 216 EWYCPECRN 224
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain
(PHD), histone binding; NMR {Oryza sativa japonica
group}
Length = 68
Score = 45.4 bits (107), Expect = 7e-07
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 11/68 (16%)
Query: 249 DTGDSKQVWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGLVAEPETSD-----WFCP 301
D+ + C C MI C+ C W H CV + +P S ++C
Sbjct: 3 DSFQPEAKVRCI-CSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCE 60
Query: 302 KC--SKVD 307
C S+ D
Sbjct: 61 LCRLSRAD 68
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 77
Score = 45.6 bits (108), Expect = 8e-07
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 259 CPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSK 305
C CG + + ++ + CD C+ YH C+ L PE W+CP C
Sbjct: 29 CRVCGGKHEPNM-QLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein;
NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Length = 61
Score = 44.3 bits (105), Expect = 1e-06
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
Query: 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCS 304
C C D G L + CD C + YH C+ L P +W CP+C+
Sbjct: 10 EFCRVCK--DGGEL--LCCDTCPSSYHIHCLNPPLPEIPN-GEWLCPRCT 54
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 49.2 bits (116), Expect = 1e-06
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--PETSDWFCPKCSKVDEGSRKEKK 315
+ C + D + MI CD C W+H CVG+ E + + CP C + S +K+
Sbjct: 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKKR 65
Query: 316 KRGRKKKTHQDIIMS 330
+ K
Sbjct: 66 RGSSKGHDTHKGKPV 80
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 47.7 bits (112), Expect = 1e-06
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 257 WICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAE--------PETSDWFCPKCS 304
+C C DD M+ C CD W H C L E PE+ + C C+
Sbjct: 6 PLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCT 61
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 78
Score = 45.1 bits (106), Expect = 1e-06
Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 243 AAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDG--CDAWYHWVCVGLVAEPETSD--- 297
++ E +V C CG + MI C+ C W H CV L +P +
Sbjct: 4 GSSGEDPFQPEIKVR-CV-CGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPL 60
Query: 298 ---WFCPKC 303
++C C
Sbjct: 61 PESFYCEIC 69
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 51
Score = 44.2 bits (105), Expect = 1e-06
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 259 CPACGVQDDGSLPMIGCDGCDAWYHWVCV--GLVAEPETSDWFCPKCS 304
C C + + +I CD C+ +H C+ L P+ +W CP C
Sbjct: 3 CKVCRKKGEDDK-LILCDECNKAFHLFCLRPALYEVPD-GEWQCPACQ 48
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta,
PHD, protein binding, peptide binding metal binding
protein; NMR {Homo sapiens}
Length = 61
Score = 43.6 bits (103), Expect = 2e-06
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 259 CPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSK 305
C C G + I CD C YH VC+ + PE W CP C K
Sbjct: 14 CEVCQ--QGGEI--ILCDTCPRAYHMVCLDPDMEKAPE-GKWSCPHCEK 57
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 48.3 bits (114), Expect = 4e-06
Identities = 40/216 (18%), Positives = 80/216 (37%), Gaps = 43/216 (19%)
Query: 27 VSPKDKTSPKEKMSSKEKTS----PKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIK 82
+ D+ PK +M+ K P+ E + K+VE V V T+
Sbjct: 772 IRGSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVE-----KVATAVLSTT-------- 818
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
+ K KK +KEK +++KK + + K KE++ KK KE ++ +E + K
Sbjct: 819 -----ARAKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYS 873
Query: 143 K-----------EKKEEKEFKMKEDKE-KPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
++ + +D PV K + + +D++ K ++
Sbjct: 874 SKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKFKG----NNGVVVLRDREPKEPVALIE 929
Query: 191 KKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESS 226
++ K + FK +++ + + S
Sbjct: 930 TVRQMK-----DVNAPLPTPFKVDDNVDFPSALQPS 960
Score = 44.0 bits (103), Expect = 7e-05
Identities = 31/171 (18%), Positives = 60/171 (35%), Gaps = 39/171 (22%)
Query: 115 KNKEKDKEKKIDKEKEK-----GKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEK 169
+ E+ K+++K + + + KK +KEK +E K KE +EK +
Sbjct: 797 RMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKKKEHEEK---------E 847
Query: 170 DSEKEKKSKDKDKKLKKEKLKKKKKEK--ERSSHEKEVIPK----LTF------------ 211
+ K K+ K E+ K K + + ++P+ ++F
Sbjct: 848 KERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYISFIKDDRFVPVRKF 907
Query: 212 -KFGTDMEEKTKRESSPKIVIKPVKS------PSPPPVAAADEYDTGDSKQ 255
+ + + P +I+ V+ P P P D D + Q
Sbjct: 908 KGNNGVVVLRDREPKEPVALIETVRQMKDVNAPLPTPFKVDDNVDFPSALQ 958
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo sapiens}
PDB: 2ke1_A 2kft_A
Length = 66
Score = 42.8 bits (101), Expect = 5e-06
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV-AEPETSDWFCPKCSKVDEGSRKEKKK 316
C C D G L I CDGC +H C+ E + W C C + + +E +
Sbjct: 10 ECAVCR--DGGEL--ICCDGCPRAFHLACLSPPLREIPSGTWRCSSCL---QATVQEVQP 62
Query: 317 RGRK 320
R +
Sbjct: 63 RAEE 66
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 92
Score = 43.8 bits (103), Expect = 5e-06
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSKVDEGSRKEK 314
IC C D+ ++ CDGCD YH C+ L P W CPKC + E
Sbjct: 18 ICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLPEIPRG-IWRCPKCILAECKQPPEA 74
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 42.9 bits (101), Expect = 5e-06
Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 5/66 (7%)
Query: 251 GDSKQVWICPACGVQDDGSL-PMIGCDGCDAWYHWVC----VGLVAEPETSDWFCPKCSK 305
G S +C C + + M+ CD C YH +C + W C +C
Sbjct: 1 GSSGSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVF 60
Query: 306 VDEGSR 311
R
Sbjct: 61 ATTTKR 66
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC
complex, transcription; 1.43A {Homo sapiens}
Length = 60
Score = 42.8 bits (101), Expect = 5e-06
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCSKVDEGSRKEK 314
C C ++ CD C YH C+ L P+ W CP+C D+ +KE+
Sbjct: 7 FCSVCRKSGQ----LLMCDTCSRVYHLDCLDPPLKTIPK-GMWICPRC--QDQMLKKEE 58
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 43.1 bits (101), Expect = 1e-05
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG--LVAEPETSDWFCPKCS 304
C +C Q + M+ CD CD +H C L P+ W C C
Sbjct: 63 TCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPK-GMWICQICR 110
Score = 33.1 bits (75), Expect = 0.038
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 6/52 (11%)
Query: 258 ICPACGVQDDGSLP--MIGCDGCDAWYHWVCVG----LVAEPETSDWFCPKC 303
C Q+ P +I C C H C+ L + W C +C
Sbjct: 10 FCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC 61
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 46.5 bits (109), Expect = 1e-05
Identities = 20/117 (17%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEK---DKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
+K + +E + K + D I ++ +KEK+I+ E+ K + + K E +
Sbjct: 452 RKGIQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQR 511
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ E M++ + E +++ + E ++ K+++ +++++ + +KE
Sbjct: 512 KNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKE 568
Score = 44.6 bits (104), Expect = 5e-05
Identities = 15/113 (13%), Positives = 58/113 (51%), Gaps = 1/113 (0%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
+ +K+ + + K + + K+ ++ + K +++ ++KE+ +E K+ ++ +
Sbjct: 479 DQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKER-SYQEHLKQLTEKMEN 537
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
++ +KE + K++++E+ ++ + + + K + + L+ K + ++ +
Sbjct: 538 DRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKMRRRKACT 590
Score = 40.7 bits (94), Expect = 7e-04
Identities = 21/125 (16%), Positives = 56/125 (44%), Gaps = 3/125 (2%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
I+ ++ ++ K+ + ++ + +K+K E+ K + + E + K
Sbjct: 455 IQAEEILQTYLKSKESMTDAILQTDQTLTEKEKEIEVERVKAESAQASAKM-LHEMQRKN 513
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
E+ +++E+ ++ + EK+ + KE++ K ++E+L K+ +KE
Sbjct: 514 EQMMEQKERSYQEHLKQLT--EKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRI 571
Query: 201 HEKEV 205
+ E+
Sbjct: 572 MKNEI 576
Score = 39.9 bits (92), Expect = 0.001
Identities = 25/159 (15%), Positives = 61/159 (38%), Gaps = 2/159 (1%)
Query: 67 PNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID 126
P +V + ++K + KK +E K + ++ ++ I
Sbjct: 417 PLEEEVKAGIYSKPGGYRLFVQKLQDLKKKYYEEPRKGIQAEEILQTYLKSKESMTDAIL 476
Query: 127 KEKEKGKKEEKEKKEEKEKKE--EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
+ + ++EKE + E+ K E + KM + ++ E++ ++++ S +E + +K
Sbjct: 477 QTDQTLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKME 536
Query: 185 KKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKR 223
K++E+ + +E L F +
Sbjct: 537 NDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNE 575
Score = 31.5 bits (70), Expect = 0.58
Identities = 13/75 (17%), Positives = 34/75 (45%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
+ + ++ + H K+ EK++ + + K++ + +++ KE +KE + K
Sbjct: 515 QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKN 574
Query: 142 EKEKKEEKEFKMKED 156
E + + K + K
Sbjct: 575 EIQDLQTKMRRRKAC 589
Score = 29.5 bits (65), Expect = 2.6
Identities = 11/80 (13%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+K++ + + K+ ++ +++ +K + +K +E+ K+ ++++ +E +
Sbjct: 509 MQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL--LKEGFQ 566
Query: 140 KEEKEKKEEKEFKMKEDKEK 159
KE + K E + + + +
Sbjct: 567 KESRIMKNEIQDLQTKMRRR 586
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger,
alpha-helical bundle, dimethyl-lysine, bromodom
chromatin regulator, metal-binding, nucleus; HET: MLY;
1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A*
3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Length = 174
Score = 44.5 bits (105), Expect = 1e-05
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL--VAEPETSDWFCPKCSKVDEGSRKEKK 315
+ C +D S IGCD C WYH CVG+ ++ CP+C ++
Sbjct: 9 LYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMTVLTP 68
Query: 316 KRGRKKKTHQDIIMS 330
+ + + ++ S
Sbjct: 69 LTEKDYEGLKRVLRS 83
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation,
nucleus, metal BIND protein; HET: ALY; NMR {Homo
sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Length = 114
Score = 43.1 bits (101), Expect = 1e-05
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 252 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG-LVAEPETSDWFCPKCSKVDEG 309
+ C CG ++ ++ CD CD YH C+ VAEP W C C ++ +
Sbjct: 54 QCIECKSCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKE 111
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 44.3 bits (104), Expect = 2e-05
Identities = 12/79 (15%), Positives = 16/79 (20%), Gaps = 26/79 (32%)
Query: 238 SPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSD 297
+ + + V CP C V +V D
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPP--------------------KIVERFSEGD 42
Query: 298 WFCPKCSKV------DEGS 310
C C V D S
Sbjct: 43 VVCALCGLVLSDKLVDTRS 61
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 44.5 bits (105), Expect = 3e-05
Identities = 19/128 (14%), Positives = 48/128 (37%), Gaps = 3/128 (2%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKE-KKIDKEKEKGKK 134
L I + + + K+ ++++++ + + + + K + KE ++KEKEK K
Sbjct: 153 AKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLKARLKEMSNLEKEKEKLTK 212
Query: 135 --EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
E +K + + ++E ++K E S + K + ++
Sbjct: 213 FVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAP 272
Query: 193 KKEKERSS 200
+
Sbjct: 273 NGVLTIDN 280
Score = 39.4 bits (92), Expect = 0.002
Identities = 26/148 (17%), Positives = 56/148 (37%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
GEI K S+K +K + I + + K KE +K + + + K+E +
Sbjct: 135 GEIAKFLSLKPSEKLETVAKLLGIDEFEKCYQKMGEIVKEYEKRLERIEGELNYKEESLK 194
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ ++ EKE + + ++K+R+ + + ++K L ++ L + E +
Sbjct: 195 ARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDL 254
Query: 199 SSHEKEVIPKLTFKFGTDMEEKTKRESS 226
E+ + T S
Sbjct: 255 PYSFVELTKDFEVRVHAPNGVLTIDNLS 282
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 41.9 bits (98), Expect = 4e-05
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVG-LVAEPETSDWFCPKCSK 305
+C C + S M+ CD CD YH C+ ++ T+ W C C
Sbjct: 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103
Score = 41.5 bits (97), Expect = 4e-05
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEP-ETSDWFCP---KCSKVDEGSRKE 313
C C D C C YH +C+ + P + + W CP C +
Sbjct: 9 NCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDS 67
Query: 314 K 314
K
Sbjct: 68 K 68
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 39.7 bits (92), Expect = 1e-04
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 259 CPACGVQDDGSL-PMIGCDGCDAWYHWVCVG-----LVAEPETSDWFCPKCSKVDEGSRK 312
C C S ++ C C YH C W+C +C++ + +
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRMAQ 78
Query: 313 EKKKRGRK 320
+ +K G
Sbjct: 79 KNQKSGPS 86
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain,
-structure, transcription; NMR {Homo sapiens} SCOP:
g.50.1.2
Length = 88
Score = 39.1 bits (91), Expect = 2e-04
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL-VAEPETSDWFCPKC 303
IC C D ++ C+ C+ +H C + + +W C C
Sbjct: 27 ICRVCQKPGD----LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 69
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 42.0 bits (99), Expect = 3e-04
Identities = 40/170 (23%), Positives = 74/170 (43%), Gaps = 24/170 (14%)
Query: 26 KVSPKDKT--SPKEKMSSK---EKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGE 80
KV+PK +T +P+EK+ EK S VKD L V V V
Sbjct: 886 KVTPKGETQLTPEEKLLRAIFGEKAS-------DVKDSSLRVPNGVSGTVIDVQVFTRDG 938
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKD-KDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
++KDK + E E+++ K+ KKD ++++ E +I E EK
Sbjct: 939 VEKDK---------RALEIEEMQLKQAKKDLSEELQILEAGLFSRIRAVL-VAGGVEAEK 988
Query: 140 KEEKEKKEEKEFKMK-EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK 188
++ + E + E+K+ +E++ ++ + + E + K + K+ K +
Sbjct: 989 LDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 1038
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger,
bromodomain, SUMO, acetylation, alternative splicing,
metal-binding, nucleus; NMR {Homo sapiens}
Length = 189
Score = 40.2 bits (93), Expect = 3e-04
Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 258 ICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL-VAEPETSDWFCPKC 303
IC C Q G L + C+ C+ +H C + + +W C C
Sbjct: 4 ICRVC--QKPGDL--VMCNQCEFCFHLDCHLPALQDVPGEEWSCSLC 46
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 41.7 bits (97), Expect = 4e-04
Identities = 24/138 (17%), Positives = 50/138 (36%), Gaps = 2/138 (1%)
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
N + V+S + D+ + + + E ++ K + + E++ ++++
Sbjct: 631 NGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLER 690
Query: 128 EKEKGKKE-EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
+K + E EK +KE E + K + R E E E K +
Sbjct: 691 QKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLK-AQ 749
Query: 187 EKLKKKKKEKERSSHEKE 204
+ + E ER +E
Sbjct: 750 ALAIETEAELERVKKVRE 767
Score = 41.3 bits (96), Expect = 6e-04
Identities = 17/117 (14%), Positives = 45/117 (38%), Gaps = 1/117 (0%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
+K + E EK +K+ + + + + K + + + + E E + K + +
Sbjct: 691 QKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQA 750
Query: 151 FKMKEDKEKPVEKIRKE-EKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 206
++ + E K +E E + + + K + ++ KK ++ + I
Sbjct: 751 LAIETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGPGTI 807
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 40.4 bits (95), Expect = 0.001
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE-KEKKEEKEKKEEK-EFK 152
+ K +E+ +K K++ E+ + E K + K EE +
Sbjct: 564 RGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGR 623
Query: 153 MKEDKEKPVEKIR-KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
+E+ + IR K+E K ++ + + K++KK+ E
Sbjct: 624 YLAKEEEKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKDTEGD 671
Score = 37.3 bits (87), Expect = 0.008
Identities = 22/140 (15%), Positives = 47/140 (33%), Gaps = 11/140 (7%)
Query: 69 IVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKE 128
VK+ D + + + + + +KK K + I+KE
Sbjct: 477 PVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKE 536
Query: 129 KEKGKKEEKEKKEEKEKKEEKE---FKMKED-KEKPVEKIRKEEKD------SEKEKKSK 178
+ ++K E +++K E + ++ +E+ EK ++ E+
Sbjct: 537 -NEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLY 595
Query: 179 DKDKKLKKEKLKKKKKEKER 198
D+ K K K +E
Sbjct: 596 DEGFDSIKAKYIAKYEELAS 615
Score = 29.6 bits (67), Expect = 2.0
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
Query: 22 KMKDKVSPKDKTSPKEKMSSKEK-------TSPKEKEYSKVKDVELGVTPMVPNIVKVTS 74
+ S +KT + ++ E+ S K K +K +++ + +
Sbjct: 570 EYAPFASDAEKTKLQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGNIIRGRYLAKEE 629
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKD 120
+ K ++ + K + K + +K ++ KD + + D
Sbjct: 630 EKKQAIRSKQEASQMAAMAEKLAAQRKAEAEKKEEKKDTEGDVDMD 675
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 40.2 bits (93), Expect = 0.001
Identities = 22/124 (17%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
S L + + K K +++ ++ K+K E + E+ + + ++ +
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQ 351
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEK--EKKSKDKDKKLKKEKLKKK 192
+ K+ + E +++ E+ K E + K +E+ R++ +D + E + + +++ L+K
Sbjct: 352 KLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKN 411
Query: 193 KKEK 196
KK+
Sbjct: 412 KKKG 415
Score = 37.1 bits (85), Expect = 0.009
Identities = 15/105 (14%), Positives = 45/105 (42%), Gaps = 1/105 (0%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
K + + +E++ + + K E + ++ + K +EK K+K+
Sbjct: 296 AAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKD 355
Query: 156 DKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
E +++ ++ K + + + + ++K+ + E K + ++R
Sbjct: 356 -SEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRIL 399
Score = 36.3 bits (83), Expect = 0.015
Identities = 20/111 (18%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Query: 99 KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKE 158
K+ + + K E+E+ + K KK E E ++ E K+KE
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKE--- 348
Query: 159 KPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 209
K +K + E + + + +++KK + K+ +E+ ++
Sbjct: 349 -------KVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANW 392
Score = 36.3 bits (83), Expect = 0.017
Identities = 19/102 (18%), Positives = 46/102 (45%)
Query: 103 KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVE 162
K + + K + E+ ++E K ++ E + E+ F+MK ++
Sbjct: 294 KLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKL 353
Query: 163 KIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
K + E E+ K+ + + K+ + K+++ E E+++ E +
Sbjct: 354 KDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQ 395
Score = 30.2 bits (67), Expect = 1.2
Identities = 17/85 (20%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK-----EEKE 150
KK + ++++ + K K+K++ + + + + ++ K E + KE +EK+ E+
Sbjct: 332 KKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKAN 391
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEK 175
++ ++ + R EK+ +K K
Sbjct: 392 WEAQQRILEQQNSSRTLEKNKKKGK 416
Score = 29.8 bits (66), Expect = 1.6
Identities = 22/106 (20%), Positives = 54/106 (50%), Gaps = 1/106 (0%)
Query: 73 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKG 132
+ L ++++++ K + E E++ + K K+ K+K+ E + +++ ++ K+
Sbjct: 312 LTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQKLKDSEAELQRRHEQMKKNL 371
Query: 133 KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
+ + KE EEK ++ E E E +++ +E+ + +KK K
Sbjct: 372 EAQHKEL-EEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 39.9 bits (93), Expect = 0.001
Identities = 22/185 (11%), Positives = 72/185 (38%), Gaps = 30/185 (16%)
Query: 72 VTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKN--------------- 116
VT L I + + ++K+++ + ++ K+++
Sbjct: 1892 VTPRHYLDFINQVVLL-----INEKRDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQK 1946
Query: 117 ----KEKDKE-----KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
K+++ K++ ++++ + ++K+ +E + + + + ++ K K + K
Sbjct: 1947 NRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKA 2006
Query: 168 EKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSP 227
E ++ + + + KLK+ + ++ EK + ++ T + E + ++
Sbjct: 2007 EPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIA-TYKEEYATLIRETEQIKTES 2065
Query: 228 KIVIK 232
V
Sbjct: 2066 SKVKN 2070
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 39.9 bits (93), Expect = 0.001
Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 17/175 (9%)
Query: 36 KEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHK 95
++ +++ KEK + DV V + + + L I + K K
Sbjct: 854 RDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGL--IFEHNRQNKGKGEMI 911
Query: 96 KKEKEKIKKKKDKKDK--------DKIKNKEKDKEKKIDKEKEKGKKEEKEK------KE 141
++ K I+ + K + + + I + E+++ KE
Sbjct: 912 EEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALIKE 971
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK-DKDKKLKKEKLKKKKKE 195
E ++ + ++ ++ E + K S + K KK+ + +K
Sbjct: 972 ENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQKIVS 1026
Score = 35.3 bits (81), Expect = 0.035
Identities = 21/196 (10%), Positives = 66/196 (33%), Gaps = 26/196 (13%)
Query: 21 SKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGE 80
+ ++ + D+ + + + + + P E K + +++ +
Sbjct: 786 LRAENILQNYDEFATLKALQQIDLSDPVAVEKFKAEHYVDDEKFAELQTIRLPADRK--- 842
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKK-----------------KKDKKDKDKIKNKEKDKEK 123
I+ +S D + +++EKE KK K + + D I + +
Sbjct: 843 IQDYRSAYNDIRDWQRREKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNR 902
Query: 124 KIDKEKEKGKKEEKEKKEEKEKKEEKE------FKMKEDKEKPVEKIRKEEKDSEKEKKS 177
+ + E ++ ++ + + ++ + D I + ++
Sbjct: 903 QNKGKGEMIEEVKRLIRSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQ 962
Query: 178 KDKDKKLKKEKLKKKK 193
++ + +K+E L +
Sbjct: 963 REAEALIKEENLNEDA 978
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 39.3 bits (92), Expect = 0.002
Identities = 18/137 (13%), Positives = 53/137 (38%), Gaps = 5/137 (3%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
G++++ + + + +E + K + ++ K K ++ K + + E +
Sbjct: 152 GDVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELK 211
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK----KLKKEKLKKKKK 194
+ + + ++ + ++E+ K + K K+KK++ + +K
Sbjct: 212 TYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKELFEK 271
Query: 195 EKER-SSHEKEVIPKLT 210
+ S H + +LT
Sbjct: 272 TFDYVSDHLDAIYRELT 288
Score = 32.7 bits (75), Expect = 0.21
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 3/89 (3%)
Query: 116 NKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
+ + K E K K + + ++ + E EE +
Sbjct: 122 DGKTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVEL---SRMFEEVSGSIQY 178
Query: 176 KSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
K + ++ K K EKL K E ++
Sbjct: 179 KKEYEELKEKIEKLSKSATESIKNRRRIH 207
Score = 29.7 bits (67), Expect = 2.1
Identities = 15/115 (13%), Positives = 41/115 (35%), Gaps = 12/115 (10%)
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
++ ++ + + + + + + K+ E+ K K +K K + + ++
Sbjct: 153 DVEQIAAQSPVELSRMFEEVSGSIQYKKEYEELKEKIEKLSKSATESIKNRRRIHGELKT 212
Query: 128 EKEKGK------------KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
K G E + + E + E+ ++ KI+K+ K+
Sbjct: 213 YKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAEEKKILNQFLKIKKKRKE 267
Score = 28.5 bits (64), Expect = 4.7
Identities = 20/149 (13%), Positives = 51/149 (34%), Gaps = 9/149 (6%)
Query: 23 MKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIK 82
+ + K K + ++ + E S++ + G K E +I+
Sbjct: 136 ENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQY-----KKEYEELKEKIE 190
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE----EKE 138
K + ++++ ++K K + + + + + E E + E
Sbjct: 191 KLSKSATESIKNRRRIHGELKTYKSPGLEVLFQGPRGSRYDEAEGRFEVINNETEQLKAE 250
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
+K+ + + + K KE EK + +
Sbjct: 251 EKKILNQFLKIKKKRKELFEKTFDYVSDH 279
>1rh1_A Colicin B; FEPA, cytotoxic bacterial protein, TONB, antibiotic;
2.50A {Escherichia coli} SCOP: b.110.1.1 f.1.1.1
Length = 511
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/191 (13%), Positives = 59/191 (30%), Gaps = 14/191 (7%)
Query: 14 PPGTPPPSKMKDKVSPKDKTSPKE--KMSSKEKTSPKEKEYSKVKDVELGV------TPM 65
P P +++ +++P+ E + E Y+ + + + +
Sbjct: 219 SPNLPDLVLSVGQMNTPVRSNPEIQEDGVISETGNYVEAGYTMSSNNHDVIVRFPEGSGV 278
Query: 66 VPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKI 125
P + D + + + + + K + +KE+ +K + +K
Sbjct: 279 SPLYISAVEILDSNSLSQRQEAENNAKDDFRVKKEQENDEKT-VLTKTSEVIISVGDKVG 337
Query: 126 DKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 185
+ +K K +E E + K + +D + K+ K DK+
Sbjct: 338 EYLGDKYKALSREIAENINNFQGKTIRSYDDAMSSINKLMA-----NPSLKINATDKEAI 392
Query: 186 KEKLKKKKKEK 196
K E
Sbjct: 393 VNAWKAFNAED 403
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon,
coiled post-transcriptional, gene regulation, chaperone;
HET: EPE; 2.20A {Helicobacter pylori}
Length = 256
Score = 38.2 bits (88), Expect = 0.003
Identities = 22/133 (16%), Positives = 55/133 (41%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
D K +++K K + K ++ + ++K E K ++E E
Sbjct: 39 NDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIE 98
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
E KE + + ++ + ++ EK +K+ + +K + + L + ++K K+
Sbjct: 99 EDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKET 158
Query: 196 KERSSHEKEVIPK 208
++ +KE + +
Sbjct: 159 QQIIFKKKEDLVE 171
Score = 36.6 bits (84), Expect = 0.010
Identities = 24/124 (19%), Positives = 57/124 (45%), Gaps = 1/124 (0%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
++ K++ +D ++K+ + K +++ + N E+D K+ + + + + +
Sbjct: 61 QVSKNEQTLQDTNAKIASIQKKMSEIKSERELRSL-NIEEDIAKERSNQANREIENLQNE 119
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERS 199
+ K +K+E K + EK ++ ++ K K + KKE L +K + K S
Sbjct: 120 IKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKEDLVEKTEPKIYS 179
Query: 200 SHEK 203
+E+
Sbjct: 180 FYER 183
Score = 30.9 bits (69), Expect = 0.65
Identities = 19/114 (16%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 92 KTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF 151
K+ + + ++ +KD DK N ++ K K I +E+ + + + ++ ++
Sbjct: 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74
Query: 152 KMKEDKEK-PVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
K+ ++K K +E + E+ + +++ + E +R S ++E
Sbjct: 75 KIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQE 128
Score = 27.4 bits (60), Expect = 8.9
Identities = 14/85 (16%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
Query: 124 KIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK---EDKEKPVEKIRKEEKDSEKEKKSKDK 180
+DKE + + +EK+++ +K + + E+ ++ + +E+ + +
Sbjct: 15 HLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNA 74
Query: 181 DKKLKKEKLKKKKKEKERSSHEKEV 205
++K+ + K E+E S E
Sbjct: 75 KIASIQKKMSEIKSERELRSLNIEE 99
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 37.2 bits (85), Expect = 0.005
Identities = 13/73 (17%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
+E E I+K ++++ K +++ + + + +EK KK+ +E + + ++ EK
Sbjct: 96 TQEPESIRKWREEQRK-RLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 154
Query: 156 DKEKPVEKIRKEE 168
+K + +
Sbjct: 155 IADKAFYQQPDAD 167
Score = 33.7 bits (76), Expect = 0.060
Identities = 11/76 (14%), Positives = 36/76 (47%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
++ +E E +K +E+++ ++ + M+++ + +K +E + E+ K+K
Sbjct: 92 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKI 151
Query: 182 KKLKKEKLKKKKKEKE 197
+K ++ + +
Sbjct: 152 NNRIADKAFYQQPDAD 167
Score = 31.8 bits (71), Expect = 0.24
Identities = 9/59 (15%), Positives = 33/59 (55%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
E ++ + + D + +++ + K KKD ++ ++ ++++ +K K ++ +K ++ +
Sbjct: 107 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 165
Score = 31.0 bits (69), Expect = 0.48
Identities = 10/72 (13%), Positives = 33/72 (45%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
+E + ++ + +++ ++ + K E+E++ K K+ R+ E+ + +
Sbjct: 93 DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 152
Query: 177 SKDKDKKLKKEK 188
++ DK ++
Sbjct: 153 NRIADKAFYQQP 164
Score = 28.0 bits (61), Expect = 5.4
Identities = 11/67 (16%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 86 SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE--KDKEKKIDKEKEKGKKEEKEKKEEK 143
SI+K ++ +K+ +E K + + + K K+ ++ ++ ++ EK K + +
Sbjct: 101 SIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF 160
Query: 144 EKKEEKE 150
++ + +
Sbjct: 161 YQQPDAD 167
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 37.8 bits (87), Expect = 0.005
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 3/108 (2%)
Query: 100 EKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 159
E++ K D +E + K+ + E KKEE+ ++ ++ +EKE ++KE +++
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363
Query: 160 PVEKIRKEEKDSEKEKKS-KDKDKKLKKEK--LKKKKKEKERSSHEKE 204
EK + +K + EKK +DK K L E K++K E +
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGS 411
Score = 37.8 bits (87), Expect = 0.005
Identities = 24/123 (19%), Positives = 52/123 (42%), Gaps = 4/123 (3%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
E++G D K + K + +K +++++ + K+ + E ++ +KE
Sbjct: 304 EEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKE 363
Query: 136 EKEKKEEKEKKEEKEFKMKEDK----EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
EK + +K + E K EDK + V ++ + +E + + + K K
Sbjct: 364 LHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDK 423
Query: 192 KKK 194
+KK
Sbjct: 424 EKK 426
Score = 37.8 bits (87), Expect = 0.006
Identities = 23/104 (22%), Positives = 52/104 (50%), Gaps = 4/104 (3%)
Query: 94 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKI-DKEKEKGKKEEKEKKEEKEKKEEKEFK 152
K+ E +KK+++ + + K+KE ++ + EKE +K ++ KK +++K++ E K
Sbjct: 326 AKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDK 385
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
K + E +++ + E + + LK+ K++K
Sbjct: 386 KKSLDD---EVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
Score = 35.5 bits (81), Expect = 0.029
Identities = 22/101 (21%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
Query: 105 KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKI 164
++ K ++ K+ + D + +E + K+ E + +K+++E ++ ++ KEK E
Sbjct: 299 RRCKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELK 358
Query: 165 RKEEKDSEKEKKSKDKDKKLKKE-KLKKKKKEKERSSHEKE 204
E++ EK + K + KK+ + KKK + E ++ ++
Sbjct: 359 EAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQR 399
Score = 35.1 bits (80), Expect = 0.034
Identities = 22/98 (22%), Positives = 46/98 (46%)
Query: 75 SEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKK 134
+E LGE++K + + + KEKE K+ +K+ +K +K + + K ++K K
Sbjct: 329 NEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKS 388
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
+ E K++K E + + + K +K+ +
Sbjct: 389 LDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
Score = 35.1 bits (80), Expect = 0.038
Identities = 16/85 (18%), Positives = 40/85 (47%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
++ +++K+K+ + + + + EK K + EK K E+K+K + E K+ K
Sbjct: 343 RQMFVQRVKEKEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTA 402
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKD 179
+ + + +++K+ K+
Sbjct: 403 AELLQSQGSQAGGSQTLKRDKEKKN 427
Score = 34.7 bits (79), Expect = 0.044
Identities = 18/116 (15%), Positives = 57/116 (49%), Gaps = 4/116 (3%)
Query: 72 VTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEK 131
+++ K+++ + ++KE+ ++ + + + + K+ EK++ ++ ++
Sbjct: 311 TDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEAEKELHEKFDR 370
Query: 132 GKKEEKEKK---EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK-SKDKDKK 183
KK +++K E+K+K + E + ++ E ++ + + + +DK+KK
Sbjct: 371 LKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 37.4 bits (86), Expect = 0.008
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
KK++ +++ + K K K + K+K + + +E+ K E + + +E K+
Sbjct: 480 KKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQ 539
Query: 148 EKEFKMKEDKEKP---VEKIRKEEKDSEK 173
K + P V +K EK
Sbjct: 540 IALGTSKLNYLDPRITVAWCKKWGVPIEK 568
Score = 34.0 bits (77), Expect = 0.088
Identities = 15/88 (17%), Positives = 42/88 (47%)
Query: 103 KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVE 162
++ K + + N + + K ++ + + + K + K K+ K K+ E K+K V+
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 518
Query: 163 KIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
++ ++ E + ++++K++ K
Sbjct: 519 RLEEQLMKLEVQATDREENKQIALGTSK 546
Score = 32.8 bits (74), Expect = 0.24
Identities = 17/130 (13%), Positives = 45/130 (34%), Gaps = 10/130 (7%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
++ K + + KI KK++ + K + + ++ + K+
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLK--------SAKADAKVMKDAKTKKVV 510
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
E K++ +++E K +++ +++ K+ ++ +K EK
Sbjct: 511 ESKKKAVQRLEEQLMK--LEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEK 568
Query: 204 EVIPKLTFKF 213
KF
Sbjct: 569 IYNKTQREKF 578
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 36.8 bits (85), Expect = 0.010
Identities = 13/89 (14%), Positives = 35/89 (39%)
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
K++ + +I K+K EE+ +E E + ++E+ +E+ ++
Sbjct: 103 KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNH 162
Query: 169 KDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+ E + + + ++ + K E
Sbjct: 163 EGHEDDGHIRAQQACIEAKHDKYMADMDE 191
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 36.8 bits (84), Expect = 0.010
Identities = 30/138 (21%), Positives = 52/138 (37%), Gaps = 7/138 (5%)
Query: 71 KVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIK-----NKEKDKEKKI 125
+ DL I K + + +KK ++ KK K+ + K + +
Sbjct: 282 HKMLNTDLSRILKMPRDPRALRAPRKKIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTIL 341
Query: 126 DKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 185
+ K + +K + K EEK K+ + K +K +K K+ K K
Sbjct: 342 RQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKK--PKKPVVGKKAAATK 399
Query: 186 KEKLKKKKKEKERSSHEK 203
K KK EK+ ++ EK
Sbjct: 400 KPAADKKPAEKKPTTEEK 417
Score = 31.4 bits (70), Expect = 0.57
Identities = 24/111 (21%), Positives = 39/111 (35%)
Query: 42 KEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEK 101
K +K K + L + P + + T K K +EK
Sbjct: 308 KIHRRVLKKNPLKNLRIMLKLNPYAKTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGV 367
Query: 102 IKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
KK +K K +K K+ + K+ KK +KK ++K +E K
Sbjct: 368 PGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 31.0 bits (69), Expect = 0.80
Identities = 18/81 (22%), Positives = 33/81 (40%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+++ K+ K + K ++K K + K +K K K+ GKK K
Sbjct: 340 ILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATK 399
Query: 140 KEEKEKKEEKEFKMKEDKEKP 160
K +KK ++ E+K+
Sbjct: 400 KPAADKKPAEKKPTTEEKKPA 420
Score = 30.2 bits (67), Expect = 1.1
Identities = 19/92 (20%), Positives = 34/92 (36%), Gaps = 6/92 (6%)
Query: 92 KTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF 151
KT ++ + K + E E+K K+ +K+ K+ K+ K+
Sbjct: 333 KTMRRNTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVG 392
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
K +KP + EKK ++KK
Sbjct: 393 KKAAATKKPAADKKP------AEKKPTTEEKK 418
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 36.7 bits (84), Expect = 0.010
Identities = 18/160 (11%), Positives = 53/160 (33%), Gaps = 1/160 (0%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
+ +K D K+ + + ++ ++ K+ ++N +E K K E +
Sbjct: 129 EELKSDLKSSTEYYN-TLDQQVVRELKESVENNTSWRESKDLHSKLSKNAASIEHYSKNN 187
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ + + ++ + + + + + K+ L+ + E
Sbjct: 188 ENSSHLEEARRQWDQQSPYLFELFETIDYNRLDTLKNCMLRFQTSFSDYLLNTTKECETV 247
Query: 205 VIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAA 244
+ L F+ ++++ K S + P A+
Sbjct: 248 MTKFLAFEPQSEIDRFAKDASQYNFQLSSSSKEVVPNNAS 287
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 37.1 bits (85), Expect = 0.011
Identities = 19/165 (11%), Positives = 44/165 (26%), Gaps = 4/165 (2%)
Query: 16 GTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYS---KVKDVELGVTPMVPNIVKV 72
+ D+ D K +S++ + K E ++ M P
Sbjct: 484 HIMGGDEDDDEEEENDNLLNLLKDNSEKSAAKKNTEVPVDIIIQPSAASKHKMFPFNPAK 543
Query: 73 TSSEDLGEIKK-DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEK 131
+D G + + D + +++ K K + K++E+ +
Sbjct: 544 IKKDDYGTVVDFTMFLPDDSDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDP 603
Query: 132 GKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
K K + D ++ + K +
Sbjct: 604 ISKRSKHRASRYSGFSGTGEAENFDNLDYLKIDKTLSKRTISTVN 648
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 36.0 bits (84), Expect = 0.013
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
K E E+ E+E KE+KE ++ EE++ EK+ K+K +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 34.9 bits (81), Expect = 0.032
Identities = 14/57 (24%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL--KKEKLKKKKKEKERSSHEKEVI 206
+ K + VE+ +EE+ +++EK+ D + + ++E+ K K K+ E++ + E++
Sbjct: 212 YVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELM 268
Score = 34.9 bits (81), Expect = 0.038
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
I K + E+ +EE+ KEEKE E + E+ +K + ++
Sbjct: 211 IYVWSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 34.1 bits (79), Expect = 0.052
Identities = 9/45 (20%), Positives = 23/45 (51%)
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDK 180
K + E+ +EE+ K +++ + +EE++ + + K +K
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 33.7 bits (78), Expect = 0.075
Identities = 11/53 (20%), Positives = 24/53 (45%)
Query: 120 DKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
K E+ ++E ++++E E + +E+K+ +K+ K D E
Sbjct: 214 WSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWE 266
Score = 33.7 bits (78), Expect = 0.083
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEK 163
K + + E+E+ KEEKE +++ EE+E + K+ K K VEK
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEE-EEKKPKTKKVEK 260
Score = 33.0 bits (76), Expect = 0.16
Identities = 8/47 (17%), Positives = 25/47 (53%)
Query: 102 IKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
K + ++ + + K++++ D E ++EE++K + K+ ++
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 32.6 bits (75), Expect = 0.19
Identities = 9/47 (19%), Positives = 25/47 (53%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
K + ++ ++++ + KE ++ +E+E+ KK + +K E+
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 32.2 bits (74), Expect = 0.23
Identities = 5/50 (10%), Positives = 25/50 (50%)
Query: 99 KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
K + ++ ++++ +EK+ +E+ ++++ + K+ ++ +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 31.8 bits (73), Expect = 0.30
Identities = 8/45 (17%), Positives = 27/45 (60%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 159
K + ++ + ++ ++ K++ ++ +E++EEK+ K K+ ++
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 31.4 bits (72), Expect = 0.40
Identities = 5/46 (10%), Positives = 25/46 (54%)
Query: 105 KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
+ ++ +E+ +++ + ++ EE+E++++ + K+ ++
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 28.7 bits (65), Expect = 3.1
Identities = 6/48 (12%), Positives = 26/48 (54%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
K + E+ ++++ ++K + ++ ++ ++EK+ K+ ++ +
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics,
NPPSFA, national project on P structural and functional
analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1
PDB: 2dma_A 4dt0_A
Length = 198
Score = 35.3 bits (81), Expect = 0.018
Identities = 13/97 (13%), Positives = 47/97 (48%)
Query: 100 EKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 159
E I ++ +K+ + KI+ + ++ +K KE+ ++ + K E ++ + + ++++ +
Sbjct: 5 ELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRII 64
Query: 160 PVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
++ K +++ + K +L+ +++
Sbjct: 65 ANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSEDE 101
Score = 29.6 bits (66), Expect = 1.5
Identities = 8/88 (9%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
+ ++ KE + K E + ++ ++ KE+ + + + + +
Sbjct: 4 AELIIQEINKEAERKIEYILNEARQQA--EKIKEEARRNAEA-KAEWIIRRAKTQAELEK 60
Query: 185 KKEKLKKKKKEKERSSHEKEVIPKLTFK 212
++ + + + + +E I +
Sbjct: 61 QRIIANARLEVRRKRLAIQEEIISSVLE 88
Score = 28.8 bits (64), Expect = 2.8
Identities = 13/104 (12%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
+ I ++ +++ E I + ++ + + ++ E K + + K + + +K+
Sbjct: 5 ELIIQEINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRII 64
Query: 145 KKEEKEFKMK--EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
E + K +E+ + + +E K + + + +K
Sbjct: 65 ANARLEVRRKRLAIQEEIISSVLEEVKRRLETMSEDEYFESVKA 108
>4aco_A Centromere DNA-binding protein complex CBF3 subun; 1.89A
{Saccharomyces cerevisiae}
Length = 956
Score = 36.2 bits (82), Expect = 0.021
Identities = 28/189 (14%), Positives = 63/189 (33%), Gaps = 3/189 (1%)
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
+ K + +++ + T ++ ++ K + D + E K D
Sbjct: 639 DADKFIRDNQPIKKEENIVNEDGPNTSRRTKRPKQIRLLSIADSSDESSTEDSNVFKKDG 698
Query: 128 E-KEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
E E G E E + + E +E+ + + E + +++ D + E K K+ +
Sbjct: 699 ESIEDGAYGENEDENDSEMQEQLKSMINELINSKISTFLRDQMD-QFELKINALLDKILE 757
Query: 187 EKLKKKKKEKERSSHEK-EVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAA 245
EK+ + ++K S K + + + E K+ + +
Sbjct: 758 EKVTRIIEQKLGSHTGKFSTLKRPQLYMTEEHNVGFDMEVPKKLRTSGKYAETVKDNDDH 817
Query: 246 DEYDTGDSK 254
T S
Sbjct: 818 QAMSTTASP 826
Score = 28.5 bits (62), Expect = 5.8
Identities = 24/232 (10%), Positives = 66/232 (28%), Gaps = 6/232 (2%)
Query: 23 MKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIK 82
+ +++ T + SK + K ++ E + +S K
Sbjct: 617 ILHQLNLFKITLDERIKKSKIDDADKFIRDNQPIKKEENIVNEDGP----NTSRRTKRPK 672
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
+ + + + + ++ KKD + + E + E + +++ + +
Sbjct: 673 QIRLLSIADSSDESSTEDSNVFKKDGESIEDGAYGENEDENDSEMQEQLKSMINELINSK 732
Query: 143 KEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
+ E K + EEK + ++ K K+ + H
Sbjct: 733 ISTFLRDQMDQFELKINALLDKILEEKVTRIIEQKLGSHT--GKFSTLKRPQLYMTEEHN 790
Query: 203 KEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSK 254
++ K T + + + + P + T + +
Sbjct: 791 VGFDMEVPKKLRTSGKYAETVKDNDDHQAMSTTASPSPEQDQEAKSYTDEQE 842
>3fqd_A Protein DHP1, 5'-3' exoribonuclease 2; protein-protein complex,
exonuclease, hydrolase, mRNA proces nuclease, nucleus,
rRNA processing, transcription; 2.20A
{Schizosaccharomyces pombe}
Length = 899
Score = 36.3 bits (82), Expect = 0.022
Identities = 24/187 (12%), Positives = 58/187 (31%), Gaps = 7/187 (3%)
Query: 17 TPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSE 76
+ +T E ++S + TS K K + ++ + N+ + TS+
Sbjct: 423 ESESYVDNVVIQRSVETQSTEVVTSSKSTSVDTKPPKKTQKIDAPAPVDLVNLSEKTSNR 482
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEE 136
LG ++ + + +K +K + E + E
Sbjct: 483 SLGATNRELINNRAANRLGLSREAAAVSSVNKLAASALKAQLVSNETLQNVPLEDSIASS 542
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
++ + D + +++ DS +E ++ D + + +
Sbjct: 543 SAYEDTDSIESSTPVVHPIDTKVSNVGQKRKAPDSTEENENTDTVRL-------YEPGYR 595
Query: 197 ERSSHEK 203
ER +K
Sbjct: 596 ERYYEQK 602
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 35.6 bits (83), Expect = 0.024
Identities = 7/47 (14%), Positives = 27/47 (57%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
+KEK+ + ++ + +++ E+ ++++ K+ K+++ ++ E
Sbjct: 407 RKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 31.4 bits (72), Expect = 0.55
Identities = 13/66 (19%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
++ E+K +++++K+ V+ ++ EK +D +++L+++ KK KE+
Sbjct: 394 PNLKELEQKLDEVRKEKDAAVQ-----SQEFEKAASLRDTEQRLREQVEDTKKSWKEKQG 448
Query: 201 HEKEVI 206
E +
Sbjct: 449 QENSEV 454
Score = 29.5 bits (67), Expect = 2.0
Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
+E E+K ++ +KE+ ++ EK +R E+ ++ + K K K+ + +
Sbjct: 397 KELEQKLDEVRKEKDAAVQSQEFEK-AASLRDTEQRLREQVEDTKKSWKEKQGQENSEVT 455
Query: 195 EKE 197
+
Sbjct: 456 VDD 458
Score = 29.5 bits (67), Expect = 2.4
Identities = 10/63 (15%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
K+ ++K+ + + +KD ++++E +K + ++ E+ +E+ E ++ K+++ + +
Sbjct: 397 KELEQKLDEVRKEKD-AAVQSQEFEKAASL-RDTEQRLREQVEDTKKSWKEKQGQENSEV 454
Query: 156 DKE 158
+
Sbjct: 455 TVD 457
Score = 29.1 bits (66), Expect = 3.3
Identities = 11/64 (17%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 117 KEKDKE-KKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEK 175
KE +++ ++ KEK+ + ++ E+ + E +++E E + ++++ E
Sbjct: 397 KELEQKLDEVRKEKDAAVQS--QEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEV 454
Query: 176 KSKD 179
D
Sbjct: 455 TVDD 458
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.026
Identities = 53/389 (13%), Positives = 101/389 (25%), Gaps = 122/389 (31%)
Query: 100 EKIKKKKDKKD-KDKIKNKEKDKEKKIDKEKEKGKKEEKEKK-----EEKEKKEEKEF-- 151
+ D KD +D K+ +E ID + K+++ ++F
Sbjct: 27 DAFVDNFDCKDVQDMPKSILSKEE--IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84
Query: 152 -KMKEDKEKPVEKIRKEEKD-SEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKL 209
++ + + + I+ E++ S + ++ +L + K R ++ L
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144
Query: 210 TFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGS 269
+ + ++I V G K C
Sbjct: 145 L-----------ELRPAKNVLIDGVL---------------GSGKTWVALDVC--LSYKV 176
Query: 270 LPMIGCDGCDAWYHWVCVGLVAEPET---------SDWFCPKCSKVDEGSR--------K 312
+ W+ + PET S+ D S +
Sbjct: 177 QCKMDFKI-----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 313 EKKKRGRKKKTHQD----------------------IIMSTYRFERDPS----------- 339
+ +R K K +++ I+++T R
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT----RFKQVTDFLSAATTT 287
Query: 340 --ELVDKSACAGSRADLKLCLLETDC------VQVDRKTPRQC------LREGLA----- 380
L S L L DC +V PR+ +R+GLA
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 381 --PQCEALKNTFFECKRSL--LDNRTRFR 405
C+ L L + R F
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger,
bromodomain, H4K16 acetylation, breast C
transcription-protein binding complex; HET: ALY; 1.70A
{Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Length = 184
Score = 34.6 bits (79), Expect = 0.027
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 262 CGV-QDDGSLPMIGCDGCDAWYHWVCVG-LVAEPETSDWFCPKCSKVDEGSRKEKKKRGR 319
C V Q+ G L + C+ C +H C + + +W C C + + +
Sbjct: 7 CAVCQNGGEL--LCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSKPEVEYDCDAPS 64
Query: 320 KKKTHQDIIMSTYRFERDP 338
+ D
Sbjct: 65 HNSEKKKTEGLVKLTPIDK 83
>1j7n_A Lethal factor precursor; anthrax, lethal toxin, zinc
metalloprotease, mapkk, MEK; 2.30A {Bacillus anthracis}
SCOP: d.92.1.14 d.92.1.14 d.166.1.1 PDB: 1jky_A 1pwp_A*
1pwq_A* 1pwv_A 1zxv_A* 1pwu_A* 1pww_A 3kwv_C
Length = 776
Score = 35.7 bits (81), Expect = 0.029
Identities = 26/173 (15%), Positives = 66/173 (38%), Gaps = 6/173 (3%)
Query: 31 DKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKD 90
++ + ++ K Y + P + EI KD
Sbjct: 202 SVEFLEQNSNEVQEVFAKAFAYYIEPQHRDVLQLYAPEAFNYMDKFNEQEINLSLEELKD 261
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE------EKEKKEEKE 144
++ + EK + K+ + D + + + KK+ E K + ++EK+ K
Sbjct: 262 QRMLSRYEKWEKIKQHYQHWSDSLSEEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKR 321
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+ + + ++++ ++K++ + +DS E++ + ++ +KEKE
Sbjct: 322 IQIDSSDFLSTEEKEFLKKLQIDIRDSLSEEEKELLNRIQVDSSNPLSEKEKE 374
Score = 28.8 bits (63), Expect = 3.7
Identities = 28/140 (20%), Positives = 54/140 (38%), Gaps = 2/140 (1%)
Query: 84 DKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
D + +K K E ++ ++++K ++ +K K K K +E KKE EK EK
Sbjct: 6 DVGMHVKEKEKNKDENKRKDEERNKTQEEHLKEIMKHIVKIEVKGEEAVKKEAAEKLLEK 65
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
+ E M + + + + + + KK+K K + ++
Sbjct: 66 VPSDVLE--MYKAIGGKIYIVDGDITKHISLEALSEDKKKIKDIYGKDALLHEHYVYAKE 123
Query: 204 EVIPKLTFKFGTDMEEKTKR 223
P L + D E T++
Sbjct: 124 GYEPVLVIQSSEDYVENTEK 143
Score = 28.0 bits (61), Expect = 7.5
Identities = 16/103 (15%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
++ + + K + + +K+ I +++K+ +K + D + E+++ K+ +
Sbjct: 287 EEGRGLLKKLQIPIEPKKDDIIHSLSQEEKELLKRIQIDSSDFLSTEEKEFLKKLQIDIR 346
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
+ +EEKE + + + ++EK+ K+ K + +
Sbjct: 347 DSLSEEEKELLNRIQVDS-SNPLSEKEKEFLKKLKLDIQPYDI 388
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis,
centromere, cell cycle, microtubule, C division,
calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Length = 315
Score = 35.2 bits (80), Expect = 0.033
Identities = 17/131 (12%), Positives = 41/131 (31%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGK 133
E + K + K E D D+ + + K K+ +
Sbjct: 130 GQPWGEETEDGIMHNKLFLDYTIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLES 189
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
E K + ++ ++ + +K R ++ + + + +K+ EKL+
Sbjct: 190 LEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYKDRLGLEIRKIYGEKLQFIF 249
Query: 194 KEKERSSHEKE 204
+ + E
Sbjct: 250 TNIDPKNPESP 260
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA
complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Length = 438
Score = 35.3 bits (81), Expect = 0.037
Identities = 18/102 (17%), Positives = 41/102 (40%), Gaps = 15/102 (14%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKI--------------KNKEKDKEKKID 126
+KK KS KK K + + KE +K+ + + + ++ + ++
Sbjct: 1 MKKSKSKKKAAKAQEVEVKEPVKEPEPLPELEAAEDLQDLPEPDPELLASEPELEDLADP 60
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK-EKPVEKIRKE 167
+ E + + +E ++EE+E + + PV + E
Sbjct: 61 LDLEGPLEADLLPEEGLLEEEEEELSLPKVSTSDPVRQYLHE 102
>3tbi_B DNA-directed RNA polymerase subunit beta; transcription accessory
protein, transcription; 3.00A {Escherichia coli}
Length = 228
Score = 34.6 bits (80), Expect = 0.038
Identities = 23/104 (22%), Positives = 50/104 (48%), Gaps = 4/104 (3%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
++KDK+ + +E + + KKD ++ +I + + G + EK K ++
Sbjct: 108 DGVEKDKRALEIEEMQLKQAKKDLSEELQI-LEAGLFSRIRAVLVAGGVEAEKLDKLPRD 166
Query: 145 KKEEKEFKMKEDKEKPVEKIRK--EEKDSEKEKKSKDKDKKLKK 186
+ E E+K+ +E++ + +E E EKK + K +K+ +
Sbjct: 167 RWLELGLT-DEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQ 209
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 35.1 bits (81), Expect = 0.039
Identities = 16/81 (19%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
K+++KE ++E+K+++++ E+K++++ K + +E E+ +++ ++K K+ +
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEE--EKKPKTKKVKEEVQEI 267
Query: 182 KKLKKEKLKKKKKEKERSSHE 202
++L K K + + + E
Sbjct: 268 EELNKTKPLWTRNPSDITQEE 288
Score = 33.2 bits (76), Expect = 0.18
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
K+ EKE + E+++K EK +E+KD + +K ++ + +++K K KK ++E E+
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEE 269
Score = 31.7 bits (72), Expect = 0.48
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
K+ ++++ +++K ++ K++EK E + E+ +EE++K + K+ KEE + +
Sbjct: 211 KEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPKLEEVDEEEEKKPKTKKVKEEVQEIEEL 270
Query: 156 DKEKPV-----EKIRKEEKDSEKEKKSKDKDKKL 184
+K KP+ I +EE ++ + S D + L
Sbjct: 271 NKTKPLWTRNPSDITQEEYNAFYKSISNDWEDPL 304
Score = 29.3 bits (66), Expect = 3.0
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 121 KEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF--KMKEDKEKPVEKIR 165
I K+ E + +E++ + EKE KE + +KE VEK+
Sbjct: 520 TLVDITKDFELEETDEEKAEREKEIKEYEPLTKALKEILGDQVEKVV 566
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine
trimethylation, protein, histone-binding protein,
transcription-structural complex; HET: M3L; 0.93A {Homo
sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Length = 129
Score = 33.6 bits (76), Expect = 0.040
Identities = 14/68 (20%), Positives = 21/68 (30%), Gaps = 12/68 (17%)
Query: 246 DEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLV--------AEPETSD 297
D+ C C + G+L I CD C + C+ E +
Sbjct: 47 DDISRDSDGMDEQCRWCA--EGGNL--ICCDFCHNAFCKKCILRNLGRRELSTIMDENNQ 102
Query: 298 WFCPKCSK 305
W+C C
Sbjct: 103 WYCYICHP 110
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 34.7 bits (79), Expect = 0.053
Identities = 19/147 (12%), Positives = 34/147 (23%), Gaps = 9/147 (6%)
Query: 6 LIPQPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPM 65
L+P+ S SP E SK+ + +
Sbjct: 14 LVPRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVT---------AEVEV 64
Query: 66 VPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKI 125
P TS+ K + KI + + KK
Sbjct: 65 APITTDATSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGELIRTAEALAALNAKKS 124
Query: 126 DKEKEKGKKEEKEKKEEKEKKEEKEFK 152
+KE + + + + +K
Sbjct: 125 EKEIWSDVVPFVRRTTDSDFDPSRMYK 151
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right
handed coiled-coil, ATPase/SY ATP binding, membrane,
hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E
3j0j_J
Length = 187
Score = 33.7 bits (77), Expect = 0.057
Identities = 11/116 (9%), Positives = 50/116 (43%)
Query: 101 KIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKP 160
K++ ++ + +I+ ++ E K + K + +++ K + +E+ E +++ + +
Sbjct: 2 KLEAILSQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAES 61
Query: 161 VEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTD 216
++ ++ + ++ ++ +E L+ ++ E +++ +
Sbjct: 62 AGELLVATARTQARGEVLEEVRRRVREALEALPQKPEWPEVVRKLALEALEALPGA 117
Score = 28.0 bits (62), Expect = 4.5
Identities = 13/120 (10%), Positives = 46/120 (38%), Gaps = 2/120 (1%)
Query: 87 IKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK 146
++ + E + + ++ + K + +K + ++K K + + + E + + + +
Sbjct: 3 LEAILSQEVEAEIQALLQEAEAK-AEAVKREAEEKAKAL-LQARERALEAQYRAALRRAE 60
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVI 206
E + + + ++ +E + +E K E ++K E + + +
Sbjct: 61 SAGELLVATARTQARGEVLEEVRRRVREALEALPQKPEWPEVVRKLALEALEALPGAKAL 120
>2p4f_A Similar to SP|P32453 saccharomyces cerevisiae YNL ATP11; half
barrel, chaperone; HET: P6G; 1.40A {Candida glabrata cbs
138}
Length = 299
Score = 33.9 bits (77), Expect = 0.082
Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 3/103 (2%)
Query: 97 KEKEKIKKKKDK---KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM 153
+ KEK+ +K + +++K + D+ ++ KE K + ++ K
Sbjct: 16 RYKEKLLQKAKAEGVESIEELKKRLADQIEEKKKELNKIDPLRELEQHLNAGSRIHTNKE 75
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+ + + K K+K K D LK +K+K K++
Sbjct: 76 HKTTKMSNKSNEKSGNVLPKDKPYKTLDDYLKLDKIKDLSKQE 118
Score = 29.7 bits (66), Expect = 1.7
Identities = 18/84 (21%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 118 EKDKEKKIDKEKEKG-KKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
++ KEK + K K +G + E+ KK ++ EEK K + +K P+ ++ + +
Sbjct: 15 DRYKEKLLQKAKAEGVESIEELKKRLADQIEEK--KKELNKIDPLRELEQHLNAGSRIHT 72
Query: 177 SKDKDKKLKKEKLKKKKKEKERSS 200
+K+ K +K
Sbjct: 73 NKEHKTTKMSNKSNEKSGNVLPKD 96
>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
falciparum}
Length = 790
Score = 34.1 bits (78), Expect = 0.084
Identities = 27/137 (19%), Positives = 42/137 (30%)
Query: 105 KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKI 164
K +K+ +IK + + K E E +K F + ++KE+
Sbjct: 623 NKKEKEWGQIKKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICN 682
Query: 165 RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRE 224
+ S+ KK KD L KE K K + K D + E
Sbjct: 683 VDDNCRSQNNKKKKDIVTILLKELKDKIVSCKNQHKATKGKECCDKLPKIADGDTSDDEE 742
Query: 225 SSPKIVIKPVKSPSPPP 241
+ P P P
Sbjct: 743 QEDEAPAPPKPKPPSTP 759
Score = 30.2 bits (68), Expect = 1.3
Identities = 21/161 (13%), Positives = 50/161 (31%), Gaps = 9/161 (5%)
Query: 48 KEKEYSKVKDVELGVTPMVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKD 107
KEKE+ ++K + + + D D K ++E D
Sbjct: 625 KEKEWGQIKKHFNKQFHGEGYDIAFKVKSYFEDNEADVRKSIDNFHVLKNKEEYEICNVD 684
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
+ + K+KD + ++ K + K + + ++ + KI
Sbjct: 685 DNCRSQNNKKKKDIVTIL---------LKELKDKIVSCKNQHKATKGKECCDKLPKIADG 735
Query: 168 EKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPK 208
+ ++E++ + K ++ S V +
Sbjct: 736 DTSDDEEQEDEAPAPPKPKPPSTPNPCVRKDQSGTHIVSVE 776
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 33.8 bits (77), Expect = 0.096
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKE 167
K I+ E + +KE + ++ E+ + +ED+E E
Sbjct: 623 KPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENV 682
Query: 168 EKDSEKEKKSKD--------KDKKLKKEKLKKKKKEKE 197
E+ + + K + +KL K+K+EKE
Sbjct: 683 INGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQEKE 720
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 32.9 bits (74), Expect = 0.15
Identities = 15/101 (14%), Positives = 40/101 (39%), Gaps = 3/101 (2%)
Query: 108 KKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK---EKKEEKEFKMKEDKEKPVEKI 164
+ + K + EK + KE+ KE+K E + + + + ED +
Sbjct: 97 RDYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGS 156
Query: 165 RKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEV 205
++ SK ++++ + + + K ++ + ++ V
Sbjct: 157 PEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACV 197
Score = 31.3 bits (70), Expect = 0.55
Identities = 11/128 (8%), Positives = 54/128 (42%), Gaps = 5/128 (3%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
LG + + ++ + ++ ++ + +K +K+ + KE+ + + + + + +
Sbjct: 82 LSLGTLAMETVAQQKRDYYQPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQ 141
Query: 136 EKEKKEEKEKKEEKEFKMKEDK-----EKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
++ E+ + + + + K E+ R+ ++++ + + + + +
Sbjct: 142 YVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREAN 201
Query: 191 KKKKEKER 198
++++ E
Sbjct: 202 ARQQDLEI 209
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 32.9 bits (75), Expect = 0.15
Identities = 6/65 (9%), Positives = 25/65 (38%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
++ + +EK+ ++ +++ K K + + E ++++ +
Sbjct: 271 AVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAGSQS 330
Query: 145 KKEEK 149
+ E +
Sbjct: 331 QVETE 335
Score = 32.9 bits (75), Expect = 0.17
Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
+K+ K +++ + + ++KK + + ++E K E G + +E
Sbjct: 262 NNKAAKTQLAVCQQRIRRQ--LAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKE 319
Query: 143 KEKKEEKEFKMKEDKE 158
++K + + + E
Sbjct: 320 EQKSNTAGSQSQVETE 335
Score = 29.1 bits (65), Expect = 3.0
Identities = 11/68 (16%), Positives = 28/68 (41%)
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+ +++ + + K+ E++ +EE ++ E S D + ++ +K
Sbjct: 268 TQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQKSNTAG 327
Query: 197 ERSSHEKE 204
+S E E
Sbjct: 328 SQSQVETE 335
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 32.8 bits (75), Expect = 0.17
Identities = 31/138 (22%), Positives = 58/138 (42%), Gaps = 11/138 (7%)
Query: 70 VKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDK--DKIKNKEKDKEKKIDK 127
V+ S ++K K + +++ + D+KDK +K+ + KD +++ +K
Sbjct: 204 VEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNK 263
Query: 128 EKEKGKKEEKEKKE------EKEKKEEKE--FKMKEDKEKPVEKIRKEEKDSEKEKKSKD 179
+ E KE KK E F + + KE + +E + K
Sbjct: 264 LRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK-RRETEEKM 322
Query: 180 KDKKLKKEKLKKKKKEKE 197
+ KL KEK +K++ EK+
Sbjct: 323 RRAKLAKEKAEKERLEKQ 340
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 32.4 bits (74), Expect = 0.18
Identities = 8/78 (10%), Positives = 29/78 (37%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
K+ + +++ E+ + +++ + +E E+ + ++ EE
Sbjct: 4 GEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAA 63
Query: 140 KEEKEKKEEKEFKMKEDK 157
+ + + E + E +
Sbjct: 64 AKAQIAELEAKLSEMEHR 81
Score = 29.3 bits (66), Expect = 1.7
Identities = 8/81 (9%), Positives = 33/81 (40%)
Query: 65 MVPNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK 124
M +V E ++++ I+++ ++E + ++ ++ ++ ++
Sbjct: 1 MEQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEE 60
Query: 125 IDKEKEKGKKEEKEKKEEKEK 145
+ K + + E + E + +
Sbjct: 61 LAAAKAQIAELEAKLSEMEHR 81
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural
protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Length = 142
Score = 31.7 bits (71), Expect = 0.21
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 12/67 (17%)
Query: 246 DEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGL--------VAEPETSD 297
D+ C C + G+L I CD C + C+ E +
Sbjct: 53 DDISRDSDGMDEQCRWCA--EGGNL--ICCDFCHNAFCKKCILRNLGRKELSTIMDENNQ 108
Query: 298 WFCPKCS 304
W+C C
Sbjct: 109 WYCYICH 115
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 32.8 bits (75), Expect = 0.23
Identities = 25/223 (11%), Positives = 76/223 (34%), Gaps = 19/223 (8%)
Query: 25 DKVSPKDKTSPKEKMSSKEKTSPKEKEYS-KVKDVELG-VTPMVPNIVKVTSSEDLGEIK 82
D ++ S + + P++ V + L + K + +
Sbjct: 12 DDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKTVPDLNNCKEN 71
Query: 83 KDKSIKKDKKTHK----KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
+ IK ++H + + + + K+ + K + ++ + E+ E
Sbjct: 72 YEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQV--RLDPYVTAEDIE 129
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE----------- 187
+ + ++ EF+ E+ ++ R +D + + K ++L +
Sbjct: 130 IMDMERERRLDEFEEFHVPERIIDSQRASLEDGTSQLQYLVKWRRLNYDEATWENATDIV 189
Query: 188 KLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIV 230
KL ++ + ++ +++P+ + + + K P +
Sbjct: 190 KLAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI 232
Score = 30.9 bits (70), Expect = 0.86
Identities = 26/142 (18%), Positives = 47/142 (33%), Gaps = 10/142 (7%)
Query: 73 TSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKG 132
S +DL E + D ++ E + +D D + N + K EK
Sbjct: 2 PSDDDLLESEDDYGSEEALSEENVHEASANPQPEDFHGIDIVINHRLKTSLEEGKVLEKT 61
Query: 133 KKEEKEKKEEKE---KKEEKEFK----MKEDKEKPVEKIRKEE---KDSEKEKKSKDKDK 182
+ KE E K ++ + V +++ + K E + D
Sbjct: 62 VPDLNNCKENYEFLIKWTDESHLHNTWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDP 121
Query: 183 KLKKEKLKKKKKEKERSSHEKE 204
+ E ++ E+ER E E
Sbjct: 122 YVTAEDIEIMDMERERRLDEFE 143
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 32.3 bits (73), Expect = 0.26
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
+K K H ++++ K + K + K E +K + E+E
Sbjct: 392 SMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDSQAMEEE 451
Query: 145 KKE 147
K E
Sbjct: 452 KPE 454
Score = 28.9 bits (64), Expect = 3.3
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 83 KDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
++K+ + +KK KE ++D++ + K +++ K + K GKK + E
Sbjct: 383 QNKAARLQISMCQKKAKEH--NERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNE 440
Query: 143 KEKKEE 148
K +
Sbjct: 441 KGTDSQ 446
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 32.2 bits (74), Expect = 0.31
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 8/87 (9%)
Query: 123 KKIDKEKEKGKK---EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKD 179
K ID E G K ++ E+K +++++K+ V+ ++ EK +D
Sbjct: 373 KAIDLIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQ-----SQEFEKAASLRD 427
Query: 180 KDKKLKKEKLKKKKKEKERSSHEKEVI 206
+++L+++ KK KE+ E +
Sbjct: 428 TEQRLREQVEDTKKSWKEKQGQENSEV 454
Score = 31.0 bits (71), Expect = 0.77
Identities = 7/47 (14%), Positives = 27/47 (57%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEE 142
+KEK+ + ++ + +++ E+ ++++ K+ K+++ ++ E
Sbjct: 407 RKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
Score = 29.1 bits (66), Expect = 3.1
Identities = 18/85 (21%), Positives = 43/85 (50%), Gaps = 11/85 (12%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKI-DKEKE-KGKKEEKEKKEEKEKKEEKEFKM 153
K+ ++K+ + + +KD ++++E +K + D E+ + + E+ +K ++++ +E
Sbjct: 397 KELEQKLDEVRKEKD-AAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVT 455
Query: 154 KEDKEK--------PVEKIRKEEKD 170
+D PV KI + E D
Sbjct: 456 VDDIAMVVSSWTGVPVSKIAQTETD 480
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 32.2 bits (73), Expect = 0.31
Identities = 19/122 (15%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK--EKKEE 148
K + +++++ + + K + + K+ E+ + + E +++K+ K
Sbjct: 97 AKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVT 156
Query: 149 KEFKMKEDKEKPVEKIR----KEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
K+ +++ + ++ KE + + K+ + K + L K E ER ++E
Sbjct: 157 SYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEYRDKIDAL-KNAIEVERDGMQEE 215
Query: 205 VI 206
I
Sbjct: 216 AI 217
Score = 28.0 bits (62), Expect = 7.0
Identities = 16/96 (16%), Positives = 34/96 (35%), Gaps = 8/96 (8%)
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKP-----VEKIRKEEKDSEKEKKSKDKDKKLKKEKL 189
+ K K+ E E++ E DK K +E++ + +K + + +
Sbjct: 96 QAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAV 155
Query: 190 KKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRES 225
K E + +L ++ E+T E+
Sbjct: 156 TSYNKILT---EEDLQMRRLATALQKEIGERTHAET 188
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 31.8 bits (71), Expect = 0.35
Identities = 11/58 (18%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 100 EKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
E + ++ K+ K++N++ +K++ + EKE E + +E + + + +M+
Sbjct: 297 ENFRSERLKRGGRKVENEDMNKDQIL-LEKE----AELRRMQEMIARMQAQMQMQMQG 349
Score = 30.2 bits (67), Expect = 1.3
Identities = 9/67 (13%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
++ E + ++ K K + ++ KD+ KE E + +E + + + + +
Sbjct: 288 QEVTQDLHYENFRSERLKRGGRKVENEDMNKDQILLE-KEAELRRMQEMIARMQAQMQMQ 346
Query: 149 KEFKMKE 155
+ +
Sbjct: 347 MQGGDGD 353
Score = 29.4 bits (65), Expect = 2.1
Identities = 7/45 (15%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 115 KNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEK 159
+ K + + ++K++ +KE E + +E + +M+ +
Sbjct: 306 RGGRKVENEDMNKDQILLEKEA-ELRRMQEMIARMQAQMQMQMQG 349
Score = 28.3 bits (62), Expect = 5.4
Identities = 8/60 (13%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
++ ++ K + + +KD+I EK+ E + + +E + + + + + + + +
Sbjct: 302 ERLKRGGRKVENEDMNKDQIL-LEKEAELR--RMQEMIARMQAQMQMQMQGGDGDGGALG 358
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 31.9 bits (73), Expect = 0.36
Identities = 4/58 (6%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKD----KDKIKNKEKDKEKKIDKEKEKGKK 134
+ + S + E+ ++ D + + + + + +G+
Sbjct: 264 LARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 32.2 bits (72), Expect = 0.37
Identities = 22/201 (10%), Positives = 52/201 (25%), Gaps = 34/201 (16%)
Query: 8 PQPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVP 67
P T S + + + + + + + K E
Sbjct: 25 AVPENSGANTELVSGESEHSTNEADKQNEGEHARENKLEKAEGV---------------- 68
Query: 68 NIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDK 127
+ + + E + + + + +
Sbjct: 69 ------------------ATASETASPASNEAATTETAEAASAAKPEEKASEVVAETPSA 110
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
E + +E E K E + ++ E + E K++EK K K+ +E
Sbjct: 111 EAKPKSDKETEAKPEATNQGDESKPAAEANKTEKEVQPDVPKNTEKTLKPKEIKFNSWEE 170
Query: 188 KLKKKKKEKERSSHEKEVIPK 208
LK + +E + + +
Sbjct: 171 LLKWEPGAREDDAINRGSVVL 191
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 31.8 bits (73), Expect = 0.43
Identities = 10/62 (16%), Positives = 27/62 (43%), Gaps = 13/62 (20%)
Query: 97 KEKEKIKKKKDK--KDKDKIKNK-------EKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
+ + + +K+ + ++ + K EK ++ ++ E+ + KE E+ E+
Sbjct: 800 EWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEAR----LKENLEQAERIR 855
Query: 148 EK 149
E
Sbjct: 856 EA 857
Score = 29.8 bits (68), Expect = 1.9
Identities = 12/71 (16%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK---EKPVEKIRKEEKDSEKEKKSKDKD 181
+D E+ + ++E++ K+ + + K EK KE ++E+ + ++ +
Sbjct: 796 LDVEEW------RRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLE 849
Query: 182 KKLK-KEKLKK 191
+ + +E L +
Sbjct: 850 QAERIREALSQ 860
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain,
winged helix domain, binding, transcription; 2.10A {Homo
sapiens} PDB: 3s32_A
Length = 177
Score = 30.9 bits (69), Expect = 0.45
Identities = 9/75 (12%), Positives = 17/75 (22%), Gaps = 11/75 (14%)
Query: 262 CGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETS-DWF----CPKCSKVDEGSRKEKKK 316
+ C C W+ G+ C C
Sbjct: 10 EENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSGNTYFL---- 65
Query: 317 RGRKKKTHQDIIMST 331
RK+ +++ +S
Sbjct: 66 --RKQANLKEMCLSA 78
>4dvy_P Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.30A
{Helicobacter pylori}
Length = 877
Score = 31.8 bits (71), Expect = 0.46
Identities = 37/200 (18%), Positives = 77/200 (38%), Gaps = 17/200 (8%)
Query: 41 SKEKTSPKEKEYSKVKDVELGVTPMVPNIVKVTSSE--DLGEIKKDKSIKKDKKT----H 94
S K + K +K GV+ + KV DL + ++++ +
Sbjct: 509 SNFKYTNASKNPNKGVGATNGVSHLEAGFNKVAVFNLPDLNNLAITSFVRRNLENKLTAK 568
Query: 95 KKKEKEKIKKKKDKKDKDK-IKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM 153
+E K KD +K + K + K + + K G +E +K + K EK +
Sbjct: 569 GLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKSTGNYDEVKKAQ---KDLEKSLRK 625
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKS-------KDKDKKLKKEKLKKKKKEKERSSHEKEVI 206
+E EK VEK + + ++ + ++ KD+ L ++ + + + + K +
Sbjct: 626 REHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALINKEANRDARAIAYTQNLKGIK 685
Query: 207 PKLTFKFGTDMEEKTKRESS 226
+L+ K ++ S
Sbjct: 686 RELSDKLEKISKDLKDFSKS 705
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 85
Score = 29.2 bits (65), Expect = 0.56
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 265 QDDGSLPMIGCDGCDA-WYHWVCVGLVAEPETSDWFCPKCSKVDEGS 310
+D+G +I C C + H C L + W C +C S
Sbjct: 39 EDEGRWRLILCATCGSHGTHRDCSSLRPNSK--KWECNECLPASGPS 83
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 31.4 bits (72), Expect = 0.58
Identities = 20/106 (18%), Positives = 49/106 (46%), Gaps = 16/106 (15%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEK---DKEKKIDK-----EKEKGK-KEEKEKKEEKE--KK 146
E+E +KK+KD ++++K E ++I K E+E+ ++ +E + + ++
Sbjct: 416 EREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRR 475
Query: 147 EEKEFKMKEDKEKPVE----KIRKEEKDSEKEKKSKDKDKKLKKEK 188
E + + + D + E ++ K E + E K + + + +
Sbjct: 476 EIELAERQYDLNRAAELRYGELPKLEAEVE-ALSEKLRGARFVRLE 520
Score = 28.3 bits (64), Expect = 5.9
Identities = 15/72 (20%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
E+E KKE+ +E+ K E E ++ + + E + E+E K ++ + + +
Sbjct: 416 EREALKKEKDPDSQERLKAIEAEIAKLTEEIAKL----RAEWEREREILRKLREAQHRLD 471
Query: 188 KLKKKKKEKERS 199
+++++ + ER
Sbjct: 472 EVRREIELAERQ 483
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 30.8 bits (69), Expect = 0.63
Identities = 0/112 (0%), Positives = 0/112 (0%), Gaps = 11/112 (9%)
Query: 94 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE--- 150
+++ K + + K KI ++ + ++ + +
Sbjct: 94 AERRILPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVL 153
Query: 151 --------FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
Sbjct: 154 LDSKDVQQ 205
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 31.6 bits (71), Expect = 0.66
Identities = 18/146 (12%), Positives = 41/146 (28%), Gaps = 10/146 (6%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
+ + + K+ KK + +D+ + + + D + EE +
Sbjct: 883 LVEYQVFDSLRLSTKQFEKKYRIDLMEDRSLSLYMENSIENDSSVQDLLDEEYTQLVADR 942
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK----------KEKLKKKKK 194
+ K K D P+ + + + + K E + K
Sbjct: 943 ELLCKFIFPKGDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTI 1002
Query: 195 EKERSSHEKEVIPKLTFKFGTDMEEK 220
+ ++V T F + K
Sbjct: 1003 FRGSDRITRDVQNNATLLFQILLRSK 1028
Score = 29.7 bits (66), Expect = 2.3
Identities = 14/132 (10%), Positives = 42/132 (31%), Gaps = 11/132 (8%)
Query: 74 SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK--------EKKI 125
+ + + SI+ D ++E + D++ K + D ++ I
Sbjct: 908 MEDRSLSLYMENSIENDSSVQDLLDEEYTQLVADRELLCKFIFPKGDARWPLPVNVQRII 967
Query: 126 DKEKEKGKKEEKEKKEEKEKKEE---KEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK 182
+ E K+ + E K + ++I ++ +++
Sbjct: 968 QNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSDRITRDVQNNATLLFQILLRS 1027
Query: 183 KLKKEKLKKKKK 194
K +++ + +
Sbjct: 1028 KFAVKRVIMEYR 1039
Score = 29.3 bits (65), Expect = 3.4
Identities = 11/94 (11%), Positives = 24/94 (25%), Gaps = 1/94 (1%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
K + + K + + + + + K K + +
Sbjct: 113 GKLKIDSSNPKFNDTQRYRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGH 172
Query: 155 EDKEKPVEKIRKEEKDSEKE-KKSKDKDKKLKKE 187
IRK+ K+ KD+ +K
Sbjct: 173 GGCGAAQPTIRKDGLRLWGSWKRGKDESDLPEKR 206
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 30.6 bits (69), Expect = 0.78
Identities = 13/56 (23%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKN---KEKDKEKKIDKEKEKGKKEEKEKKEEK 143
K++ +IK+ + D K+ + +K+++K++ +++K + E+EK EE
Sbjct: 75 KESGGPLNGIEIKEF-SRCDFTKMFDYFQLQKEQKKQLTSQEKKQIRLEREKFEED 129
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase
subunit A', DNA-directed...; transcription, fusion
protein, chimera protein, multiprotein; 3.30A
{Pyrococcus furiosus}
Length = 436
Score = 30.8 bits (70), Expect = 0.78
Identities = 15/90 (16%), Positives = 35/90 (38%), Gaps = 3/90 (3%)
Query: 80 EIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
EI++ + + + + E IK+ K + + + I EK + +
Sbjct: 173 EIEEYMKKIELARNRRSEFNEIIKEIHKKAKERMVCPHCGAPQYPIKFEKPT--IYWEIR 230
Query: 140 KEEKEKKEEKEFKMKEDKEKPVEKIRKEEK 169
K+E+ + E ++ +EKI ++
Sbjct: 231 KDEQGNEYRHRLMPTEVRDW-LEKIPDKDL 259
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 30.4 bits (69), Expect = 0.80
Identities = 16/116 (13%), Positives = 34/116 (29%), Gaps = 12/116 (10%)
Query: 101 KIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK---------KEEKEF 151
+ K + +K ++ K + + K EK +
Sbjct: 87 RFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDAI 146
Query: 152 -KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK--EKLKKKKKEKERSSHEKE 204
+ E +EK V ++ +K KK + K + ++ + E H
Sbjct: 147 LESDEAREKVVREVLNLDKFETAYKKLSELKKTINNRIKEYRDILARTEGGHHHHH 202
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 31.1 bits (71), Expect = 0.82
Identities = 21/113 (18%), Positives = 43/113 (38%), Gaps = 25/113 (22%)
Query: 111 KDKIKNKE------------KDKEKKIDKEKEKGKKEEKEKKEEKEKKE---------EK 149
KDK KE +D+ +K+ ++ E + +++ E + + K
Sbjct: 489 KDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRK 548
Query: 150 EFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
+ + DK +K E + E K +D K ++ K +E + S +
Sbjct: 549 QVEEAGDKLPADDKTAIESALTALETALKGED----KAAIEAKMQELAQVSQK 597
Score = 29.5 bits (67), Expect = 2.3
Identities = 21/120 (17%), Positives = 45/120 (37%), Gaps = 32/120 (26%)
Query: 89 KDKKTHKKKE----------KEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKE 138
KDK + K+++ +++I+K +D N E D++ E +
Sbjct: 489 KDKNSGKEQKITIKASSGLNEDEIQKMV----RDAEANAEADRK----------FDELVQ 534
Query: 139 KKEEKE------KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDK-KLKKEKLKK 191
+ + + +K+ +E K + I E K +DK + K ++L +
Sbjct: 535 TRNQGDHLLHSTRKQVEEAGDKLPADD-KTAIESALTALETALKGEDKAAIEAKMQELAQ 593
>3g3t_A Vacuolar transporter chaperone 4; polyphosphate polymerase,
polyphosphate kinase, VTC complex, tunnel enzyme,
membrane, phosphoprotein; 1.85A {Saccharomyces
cerevisiae} PDB: 3g3q_A* 3g3r_A 3g3u_A
Length = 295
Score = 30.5 bits (68), Expect = 0.89
Identities = 20/100 (20%), Positives = 40/100 (40%)
Query: 94 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM 153
+ + K++ + + + E+K +E G+K K + KE+ K
Sbjct: 66 YGRLRKDEGAEAHRLRWYGGMSTDTIFVERKTHREDWTGEKSVKARFALKERHVNDFLKG 125
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
K ++ K+RKE K E ++ + + + KKK
Sbjct: 126 KYTVDQVFAKMRKEGKKPMNEIENLEALASEIQYVMLKKK 165
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 30.5 bits (68), Expect = 0.92
Identities = 19/118 (16%), Positives = 45/118 (38%), Gaps = 13/118 (11%)
Query: 93 THKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
+ +E+++++K ++ + + K + I+K K + + ++ + K K +E
Sbjct: 104 SLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKD 163
Query: 153 MKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE-KLKKKKKEKERSSHEKEVIPKL 209
DK K +K +S K L + + H + ++P L
Sbjct: 164 KDRDKAK------------DKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGL 209
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 30.8 bits (69), Expect = 1.1
Identities = 13/121 (10%), Positives = 41/121 (33%), Gaps = 1/121 (0%)
Query: 77 DLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKI-KNKEKDKEKKIDKEKEKGKKE 135
D ++ I D K ++E + KD+K ++ + E + ++ + +
Sbjct: 909 DPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVNIRRIIQNAQ 968
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
+ + + + + + E + +E + ++ L L+ +
Sbjct: 969 QTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTLFCCLLRSRLAT 1028
Query: 196 K 196
+
Sbjct: 1029 R 1029
Score = 28.1 bits (62), Expect = 6.8
Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 8/151 (5%)
Query: 107 DKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRK 166
D D I+ + D D EK + + + E + + ++ +
Sbjct: 871 DGMDAAHIEKQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLD 930
Query: 167 EEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESS 226
EE KD+K +E + + + +I F D + + + +
Sbjct: 931 EEYKQLV------KDRKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPS--DLT 982
Query: 227 PKIVIKPVKSPSPPPVAAADEYDTGDSKQVW 257
K ++ VK + + + + Q
Sbjct: 983 IKDIVLGVKDLQENLLVLRGKNEIIQNAQRD 1013
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 30.3 bits (69), Expect = 1.1
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 3/72 (4%)
Query: 122 EKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
K DK K+ + +K + + E + ++ E + K + K S+D
Sbjct: 147 SKGWDKFA---KRIKLQKIKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDPTKWSQDDL 203
Query: 182 KKLKKEKLKKKK 193
E + K
Sbjct: 204 LAFASEIRRVNK 215
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 30.4 bits (69), Expect = 1.2
Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 120 DKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEK 163
D+ ++ +E+ K + +EE + +K +E+ +
Sbjct: 726 DRFQES-RERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELR 768
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 29.4 bits (66), Expect = 1.2
Identities = 12/70 (17%), Positives = 29/70 (41%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
E++ D + + + T K + +K +D D + + + + G+
Sbjct: 109 EEVEAWLDDDTQEITRGTVKLLREFLDEKGRDPNTVDAFNGQTDAERDAEAGDGQDGEDG 168
Query: 136 EKEKKEEKEK 145
+++ K+ KEK
Sbjct: 169 DQDGKDAKEK 178
>1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO,
heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens}
PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A
Length = 640
Score = 30.5 bits (68), Expect = 1.2
Identities = 22/136 (16%), Positives = 45/136 (33%), Gaps = 10/136 (7%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
+ G I+ ++ D I +D + + EK K+ E K
Sbjct: 507 SEFG-IRNGSRLQADDFLQDYTLLINILHSEDLGKDVEFEVVGDAPEKVGPKQAEDAAKS 565
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK-----KEKLK 190
++ + ++ V + +E+DS ++++ K KE L
Sbjct: 566 ITNGSDDGAQPSTS----TAQEQDDVLIVDSDEEDSSNNADVSEEERSRKRKLDEKENLS 621
Query: 191 KKKKEKERSSHEKEVI 206
K+ E+ +VI
Sbjct: 622 AKRSRIEQKEELDDVI 637
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 29.8 bits (66), Expect = 1.2
Identities = 13/75 (17%), Positives = 29/75 (38%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
K + K + + + +++ + EK + + +K +K +E KE +M+
Sbjct: 109 NTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQ 168
Query: 155 EDKEKPVEKIRKEEK 169
+ EEK
Sbjct: 169 AFVSESKRAAELEEK 183
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; 2.4A {Mus musculus} SCOP:
a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Length = 386
Score = 29.9 bits (66), Expect = 1.4
Identities = 25/125 (20%), Positives = 54/125 (43%), Gaps = 19/125 (15%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKD-KIKNKEKDKEKKIDKEKEKGKK 134
+ L ++ D + ++ +I K+ D D K ++ + D E+ +D+ +K K
Sbjct: 276 QHLLLVRNDYEARPQYYKLIEECVSQIVLHKNGTDPDFKCRHLQIDIERLVDQMIDKTKV 335
Query: 135 EEKEKK-EEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKK 193
E+ E K E EKK + E + + + ++K+ + ++KL+ +
Sbjct: 336 EKSEAKATELEKKLDSELTARHELQVEMKKMEND-----------------FEQKLQDLQ 378
Query: 194 KEKER 198
EK+
Sbjct: 379 GEKDA 383
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 29.8 bits (66), Expect = 1.6
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 1/110 (0%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEK-KIDKEKEKGKK 134
E + E KK + K K KKK + +K K ++ + K+ + ++K
Sbjct: 2 EAVPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFAL 61
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
+ K K E+ + KE ++ +IR + + KL
Sbjct: 62 KTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPKL 111
>1u2m_A Histone-like protein HLP-1; coiled coil, chaperone; 2.30A
{Escherichia coli} SCOP: f.48.1.1 PDB: 1sg2_A
Length = 143
Score = 28.7 bits (64), Expect = 1.7
Identities = 13/92 (14%), Positives = 35/92 (38%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
+ K + E + + D + K K K + EK+ + + ++ +
Sbjct: 23 GVSNTLENEFKGRASELQRMETDLQAKMKKLQSMKAGSDRTKLEKDVMAQRQTFAQKAQA 82
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKK 176
++++ + E++ K V +I+ K +
Sbjct: 83 FEQDRARRSNEERGKLVTRIQTAVKSVANSQD 114
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting,
protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP:
a.4.5.54 a.4.5.54
Length = 566
Score = 30.0 bits (66), Expect = 1.7
Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 226 SPKIVIKPVKSPSPPPVAAADEYDTGDSKQVWICPACGVQDDGSLPMIGCDGCDAW 281
+ + K + S A+ + ICPAC + + C+ C
Sbjct: 150 ADYELTKSSINCSNAIDPNANPQNQFGVNSENICPACTFANHPQIGN--CEICGHR 203
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine
exchange factor, coiled-coil, endocytosis/exocytosis
complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Length = 154
Score = 29.0 bits (64), Expect = 1.8
Identities = 22/120 (18%), Positives = 43/120 (35%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
K+I K + + K K++ ++ K + I KE E K E+E + +
Sbjct: 27 KTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNK 86
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKE 204
+ E+ + ++ V RKE+ E K + + K L + +
Sbjct: 87 EVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146
Score = 26.7 bits (58), Expect = 9.8
Identities = 23/124 (18%), Positives = 46/124 (37%), Gaps = 3/124 (2%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
++ + K+ + ++E + + K + KE + K ++E + K KE ++
Sbjct: 34 AAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEAD---KLNKEVED 90
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
++ M D K I K ++ + KD +LK KK +
Sbjct: 91 LTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLDN 150
Query: 202 EKEV 205
E V
Sbjct: 151 ESTV 154
>2wn4_A ADP-ribosyltransferase enzymatic component; CDTA, ACTIN-ADPRT,
binary toxin; 1.85A {Clostridium difficile} PDB: 2wn5_A
2wn7_A* 2wn8_A 2wn6_A*
Length = 463
Score = 29.9 bits (66), Expect = 1.8
Identities = 19/119 (15%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK- 143
K ++ ++ ++ EKE ++ K D +I + + D + E +E++ K+
Sbjct: 72 KEAERIEQKLERSEKEALESYKK--DSVEISKYSQTRNYFYDYQIEANSREKEYKELRNA 129
Query: 144 --EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSS 200
+ K +K + + K + + + S +K + K+ K K+
Sbjct: 130 ISKNKIDKPMYVYYFESPEKFAFNKVIRTENQNEISLEKFNEFKETIQNKLFKQDGFKD 188
Score = 28.0 bits (61), Expect = 7.0
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 9/106 (8%)
Query: 86 SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK 145
S K T+K + KDK+ + + KE ++ ++ + EK E +K +
Sbjct: 41 SEKVCNTTYKAPIERPEDFLKDKEKAKEWERKEAERIEQKLERSEKEALESYKKDSVEIS 100
Query: 146 KEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
K + D + + + +EK+ K+ + K K+ K
Sbjct: 101 KYSQTRNYFYD---------YQIEANSREKEYKELRNAISKNKIDK 137
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 29.8 bits (66), Expect = 1.9
Identities = 10/63 (15%), Positives = 20/63 (31%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
+ K+ ++ K KK + ++ K +E + +E KE
Sbjct: 348 AEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIKE 407
Query: 142 EKE 144
E
Sbjct: 408 GDE 410
Score = 29.4 bits (65), Expect = 2.6
Identities = 10/70 (14%), Positives = 28/70 (40%)
Query: 81 IKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
+K+ + K++ K +K K K + K ++ K ++E+ +
Sbjct: 340 VKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFI 399
Query: 141 EEKEKKEEKE 150
+ ++ +E +
Sbjct: 400 AQGQEIKEGD 409
>3ls8_A Phosphatidylinositol 3-kinase catalytic subunit type 3; alpha/beta
protein, PIK3C3, compound 15E, structural genomics, SGC
stockholm; HET: AJZ; 2.25A {Homo sapiens} PDB: 3ihy_A
Length = 614
Score = 29.8 bits (66), Expect = 2.0
Identities = 16/130 (12%), Positives = 39/130 (30%), Gaps = 21/130 (16%)
Query: 88 KKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
K + ++ + ++ + +++KK ++ + EK + E
Sbjct: 268 KSVRVMRSLLAAQQTFVDRLVHLMKAVQRESGNRKKKNERLQALLGDNEKMNLSDVE--- 324
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIP 207
+ + + + I E + KS +L + E
Sbjct: 325 --LIPLPLEPQVKIRGIIPE---TATLFKSALMPAQLFFK-------------TEDGGKY 366
Query: 208 KLTFKFGTDM 217
+ FK G D+
Sbjct: 367 PVIFKHGDDL 376
>1xfx_A Calmodulin-sensitive adenylate cyclase; protein-protein
interaction, lyase/metal binding protein complex; 3.20A
{Bacillus anthracis} PDB: 1xfw_A* 1xfv_A 1xfy_A 1xfz_A
1y0v_A 1xfu_A
Length = 777
Score = 29.9 bits (66), Expect = 2.0
Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 9/128 (7%)
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
E ++ K EK K E+++FK D + K + +K ++++D KK+ K
Sbjct: 12 NEHYTESDIKRNHKTEKNKTEKEKFK---DSINNLVKTEFTNETLDKIQQTQDLLKKIPK 68
Query: 187 E------KLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPP 240
+ +L + + E + + L+ + M + ++ + K +P
Sbjct: 69 DVLEIYSELGGEIYFTDIDLVEHKELQDLSEEEKNSMNSRGEKVPFASRFVFEKKRETPK 128
Query: 241 PVAAADEY 248
+ +Y
Sbjct: 129 LIINIKDY 136
Score = 27.6 bits (60), Expect = 8.6
Identities = 18/121 (14%), Positives = 45/121 (37%), Gaps = 1/121 (0%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEK-EKGKKEEK 137
+ + D K + K EK K +K+K K + + E E ++ + K+
Sbjct: 8 AAAMNEHYTESDIKRNHKTEKNKTEKEKFKDSINNLVKTEFTNETLDKIQQTQDLLKKIP 67
Query: 138 EKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKE 197
+ E + E + ++++ ++ + S+ + + +KK+E
Sbjct: 68 KDVLEIYSELGGEIYFTDIDLVEHKELQDLSEEEKNSMNSRGEKVPFASRFVFEKKRETP 127
Query: 198 R 198
+
Sbjct: 128 K 128
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 29.3 bits (65), Expect = 2.3
Identities = 9/87 (10%), Positives = 32/87 (36%), Gaps = 1/87 (1%)
Query: 85 KSIKKDKKTHKKKEKEKIKK-KKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEK 143
++ K +K +K ++ + K K + ++ KE ++ ++ ++ +
Sbjct: 108 ARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADI 167
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEEKD 170
+ K ++ + + + D
Sbjct: 168 NVTKADVEKARQQAQIRHQMAEDSKAD 194
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase,
AARS, serrs, translation, ATP-binding,
nucleotide-binding, structural genomics; HET: ATP; 1.95A
{Trypanosoma brucei} PDB: 3lsq_A*
Length = 484
Score = 29.6 bits (67), Expect = 2.3
Identities = 21/123 (17%), Positives = 44/123 (35%), Gaps = 5/123 (4%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK-KEEK 143
+ + + + +E ++ ++ D D I +K ++ E KK K
Sbjct: 11 QLFRDETGANIIRESQR-RRFADPDIVDAIIEADKKW-RRTQFLTEASKKLINICSKAVG 68
Query: 144 EKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEK--LKKKKKEKERSSH 201
KK+ KE + P K E + E+ + +LK+ L + + +
Sbjct: 69 AKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDLSDQVAGLAKEAQ 128
Query: 202 EKE 204
+ E
Sbjct: 129 QLE 131
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 29.0 bits (65), Expect = 2.4
Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 7/110 (6%)
Query: 93 THKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFK 152
++K +K+ + + K ++ E + + K + EFK
Sbjct: 192 DRRQKLYDKLNSECISAECTNGSVDNSKCTHACVNYKNYILTKKTEYEIQT-NKYDNEFK 250
Query: 153 MKEDKEKPVEKIRKEE------KDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
K +K KE+ + K K+K K E L+ K K
Sbjct: 251 NKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWKNPYETLEDTFKSK 300
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 29.5 bits (66), Expect = 2.5
Identities = 31/149 (20%), Positives = 61/149 (40%), Gaps = 11/149 (7%)
Query: 70 VKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDK--DKIKNKEKDKEKKIDK 127
V+ S ++K K + +++ + D+KDK +K+ + KD +++ +K
Sbjct: 275 VEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNK 334
Query: 128 EKEKGKKEEKEKKE------EKEKKEEKE--FKMKEDKEKPVEKIRKEEKDSEKEKKSKD 179
+ E KE KK E F + + KE + +E + K
Sbjct: 335 LRMMHSNMETLYKELGDYFVFDPKKLSVEEFFMDLHNFRNMFLQAVKENQK-RRETEEKM 393
Query: 180 KDKKLKKEKLKKKKKEKERSSHEKEVIPK 208
+ KL KEK +K++ EK++ + +
Sbjct: 394 RRAKLAKEKAEKERLEKQQKREQLIDMNA 422
Score = 27.5 bits (61), Expect = 9.5
Identities = 9/52 (17%), Positives = 27/52 (51%)
Query: 130 EKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
+ KE ++++E +EK + ++ +++ +EK +K E+ + + +
Sbjct: 377 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDETG 428
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 28.7 bits (65), Expect = 2.7
Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 25/113 (22%)
Query: 111 KDKIKNKE------------KDKEKKIDKEKEKGKKEEKEKKEEKEKKE---------EK 149
KDK KE +D+ +K+ ++ E + +++ +E + + K
Sbjct: 101 KDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRK 160
Query: 150 EFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHE 202
+ + DK +K E + E K +D K ++ K +E + S +
Sbjct: 161 QVEEAGDKLPADDKTAIESALTALETALKGED----KAAIEAKMQELAQVSQK 209
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger,
histone binding, chromosomal protein, DNA damag repair,
DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens}
PDB: 3a1a_A*
Length = 159
Score = 28.6 bits (63), Expect = 2.7
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 10/60 (16%)
Query: 252 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVGLVAEPETSD-------WFCPKCS 304
D Q + C C + M G + C + CV L+ P + W C C
Sbjct: 76 DGYQSY-CTICC--GGREVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCG 132
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 29.0 bits (66), Expect = 2.9
Identities = 16/100 (16%), Positives = 40/100 (40%), Gaps = 5/100 (5%)
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
I ++ K+ K+ ++ +K + +E++ D E +K S+D+
Sbjct: 217 IQGIQQLVKETGVTKRTPQKLFTPSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNK 276
Query: 185 KKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRE 224
+ +++ KEK + E+ +F + ++ R
Sbjct: 277 IRLDTEEQLKEKFPEADPYEI--IESFN---VVAKEVFRS 311
Score = 28.6 bits (65), Expect = 4.0
Identities = 10/80 (12%), Positives = 23/80 (28%), Gaps = 1/80 (1%)
Query: 95 KKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
K + + ++ + + E K E + E++ K +
Sbjct: 229 VTKRTPQKLFTPSPEIVKYTHKLAMERLYAVFTDYEHDKVSRDEAVNKIRLDTEEQLK-E 287
Query: 155 EDKEKPVEKIRKEEKDSEKE 174
+ E +I + KE
Sbjct: 288 KFPEADPYEIIESFNVVAKE 307
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma
factor, transcription regulation; 2.60A {Escherichia
coli} SCOP: a.177.1.1
Length = 339
Score = 29.1 bits (65), Expect = 3.0
Identities = 21/151 (13%), Positives = 55/151 (36%), Gaps = 10/151 (6%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDK-------DKIKNKEKDKEKKIDKEKEKGKK 134
+IK ++H ++E +K + K D + N + ++ ++ K
Sbjct: 121 VTRDTIKAKGRSHATAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMK 180
Query: 135 EEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKK 194
E+ + +K F E + K ++ ++ +KL++ ++
Sbjct: 181 LCVEQCKMPKKNFITLFTGNETSDTWFNAAIAMNKPWSEKLHDVSEEVHRALQKLQQIEE 240
Query: 195 EKERSSHE-KEVIPKLTFKFGTDMEEKTKRE 224
E + + K++ ++ G + K+E
Sbjct: 241 ETGLTIEQVKDINRRM--SIGEAKARRAKKE 269
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 28.9 bits (64), Expect = 3.3
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 90 DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK--- 146
+ + + E +KK D + + K + + KKE K KK
Sbjct: 215 EPEKFQAHFSEYLKKGIDADGMESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTY 274
Query: 147 EEKEFKMKEDKEKPVEKIRKEEKDSEKE 174
E+++ + E ++ D E++
Sbjct: 275 EQRKASLVERLNALNSSAGADDDDEEED 302
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain,
TGF-beta, epigenetics, methylation, K9ME3, K14AC,
transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB:
3u5m_A* 3u5o_A* 3u5p_A*
Length = 207
Score = 28.3 bits (62), Expect = 3.4
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 252 DSKQVWICPACGVQDDGSLPMIGCDGCDAWYHWVCVG-LVAEPETSDWFCPKC 303
D + W C C Q+ G L + C+ C +H C + + DW C C
Sbjct: 4 DPNEDW-CAVC--QNGGDL--LCCEKCPKVFHLTCHVPTLLSFPSGDWICTFC 51
>2a1d_D Staphylocoagulase; prothrombin activator, hydrolase-hydrolase
inhibitor complex; HET: 0G6 NDG; 3.50A {Staphylococcus
aureus}
Length = 329
Score = 28.6 bits (63), Expect = 3.4
Identities = 16/95 (16%), Positives = 36/95 (37%)
Query: 76 EDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
+ G K D H K + + K+ ++ + N ++ + K K+ + + +
Sbjct: 228 IETGLNKPGNITSYDSSKHHYKNHSEGFEALVKETREAVANADESWKTKTVKKYGESETK 287
Query: 136 EKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
KEE + ++ + K +E + EE
Sbjct: 288 SPVVKEENKVEDPQSPKFDNQQEVKTTAGKAEETT 322
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil,
endocytosis/exocytosis complex; 3.00A {Saccharomyces
cerevisiae} SCOP: h.1.33.1
Length = 135
Score = 27.5 bits (60), Expect = 4.1
Identities = 21/114 (18%), Positives = 42/114 (36%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
K+I K + + K K++ ++ K + I KE E K E+E + +
Sbjct: 15 KTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNK 74
Query: 145 KKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKER 198
+ E+ + ++ V R E+ E K + + K L + +
Sbjct: 75 EVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLREKDMLLDTLTLQLKN 128
>3gmi_A UPF0348 protein MJ0951; protein with unknown function, structural
genomics, PSI, MCS protein structure initiative; 1.91A
{Methanocaldococcus jannaschii}
Length = 357
Score = 28.4 bits (63), Expect = 4.1
Identities = 15/43 (34%), Positives = 25/43 (58%)
Query: 112 DKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
+KN +D+E+ I K K +K K+ K+ E+ +E+E K K
Sbjct: 11 LNLKNFLEDREEIIRDAKRKDEKSFKDFKKIVEEIKERENKDK 53
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 27.8 bits (61), Expect = 4.2
Identities = 19/101 (18%), Positives = 38/101 (37%)
Query: 92 KTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEF 151
+ KK K +K KK + + ++ K+ + EK +E K+
Sbjct: 58 RRLWKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQK 117
Query: 152 KMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
K + ++K ++ + + +K K K+ K KK
Sbjct: 118 KANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 27.4 bits (60), Expect = 6.0
Identities = 24/118 (20%), Positives = 43/118 (36%), Gaps = 3/118 (2%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE---EKE 138
K + K K ++ K I K+K + + + E ++
Sbjct: 37 KAKCLSLRKVKAQKITWTIARRRLWKKVKATDIAQKKKKRNVTVARAIVGISLEEINRRK 96
Query: 139 KKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
+ KK E E ++E K+K I K+ D + + K KK + +K K+ K
Sbjct: 97 NLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAK 154
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 28.5 bits (64), Expect = 4.4
Identities = 9/77 (11%), Positives = 25/77 (32%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
K K +K K K+ ++ ++ D + + + ++ ++
Sbjct: 54 NKLKNLCSKTIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVRLLIDEA 113
Query: 151 FKMKEDKEKPVEKIRKE 167
+ + +E R E
Sbjct: 114 ILKCDAERIKLEAERFE 130
Score = 28.1 bits (63), Expect = 6.4
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 2/84 (2%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDK 157
+ + K K+ K I K K KE D E + K ++K+ +
Sbjct: 49 RADNLNKLKNLCSK-TIGEKMKKKEPVGDDESVPENVLSFDDLTADALANLKVSQIKKVR 107
Query: 158 EKPVEKIRK-EEKDSEKEKKSKDK 180
E I K + + + E + +
Sbjct: 108 LLIDEAILKCDAERIKLEAERFEN 131
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 28.2 bits (63), Expect = 4.6
Identities = 17/123 (13%), Positives = 43/123 (34%), Gaps = 14/123 (11%)
Query: 83 KDKSIKKDKKTHK--KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKK 140
K + HK + E +K+++ K K+ ++ + + D + ++ E +
Sbjct: 24 LQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNEFDARERAEREREAARG 83
Query: 141 EEKEKKEEKEFKMKEDKEKPVEKIRKE---EKDSEKEKKS---------KDKDKKLKKEK 188
+ +K+ +K+ ++ R SE++ K +
Sbjct: 84 DAAAEKQRLASLLKDLEDDASGYNRLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQD 143
Query: 189 LKK 191
LK+
Sbjct: 144 LKQ 146
Score = 27.9 bits (62), Expect = 6.4
Identities = 16/83 (19%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 127 KEKEKGKKEEKEKKEEKEKKEEK-EFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLK 185
++E K+ E EE +KK + F KED+++ +I ++E++ + + D+ + +
Sbjct: 8 TQREANVKKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQKEQEQKAKLAEYDQKVQNE 67
Query: 186 KEKLKKKKKEKERSSHEKEVIPK 208
+ ++ ++E+E + + +
Sbjct: 68 FDARERAEREREAARGDAAAEKQ 90
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 28.0 bits (62), Expect = 4.7
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 111 KDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKD 170
+ + ++ + D + EE E++ +E E+ + + +E E+ E
Sbjct: 185 RGALVDRTQPWSIMPDLYFYR-DPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEWA 243
Query: 171 SEKE 174
E
Sbjct: 244 EENA 247
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T
2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T
2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Length = 146
Score = 27.7 bits (62), Expect = 4.7
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 113 KIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
+ K + K D+ E+ KEE +K +E + +E
Sbjct: 111 RRKLRADRKRIDQDRAAERAAKEEAQKAQEPKASQE 146
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 28.1 bits (62), Expect = 4.8
Identities = 17/114 (14%), Positives = 36/114 (31%)
Query: 82 KKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKE 141
+ + K + K +I K +K + + +K + K + K
Sbjct: 184 VRASDEGESSKYKPEDHKARIFGKHIDAYMKHLKGQSNEAFQKQFSKWSKTLEAAKVDSV 243
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKE 195
EK + K + K + K K+ +K+++K K +
Sbjct: 244 EKLFTKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQL 297
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 28.4 bits (64), Expect = 4.9
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 86 SIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEK 139
+ +K K E+IK+K D+ + K+ K K+ + KK
Sbjct: 727 DLSNFQKGDVKLSLERIKEKVDR--------LNELKQGKNKKKSKHSKKHHHHH 772
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 28.3 bits (63), Expect = 4.9
Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 10/108 (9%)
Query: 95 KKKEKEKIKKK-KDKKDKDKIKNKEKDK-EKKIDKEKE--KGKKEEKEKKEEKEKKEEKE 150
+ + E + K + +K + + KK+E + + KE
Sbjct: 191 RNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKKEYQSLNSQYDMNYKE 250
Query: 151 FKMKED------KEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKK 192
K ++ K+K + + + E + K+ + L ++K
Sbjct: 251 TKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPYETLDDTEVKNN 298
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 28.1 bits (62), Expect = 5.1
Identities = 11/74 (14%), Positives = 25/74 (33%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
++ ++ K+ + I+ +K+ D N ++ + KE K+
Sbjct: 185 RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQSLI 244
Query: 145 KKEEKEFKMKEDKE 158
K E + E
Sbjct: 245 KYMETQRSYTALAE 258
Score = 27.3 bits (60), Expect = 7.7
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 134 KEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
+ K +E+ + K+ K +E R +E
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAE 258
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase,
aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP:
c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*
Length = 505
Score = 28.3 bits (63), Expect = 5.2
Identities = 12/108 (11%), Positives = 32/108 (29%), Gaps = 13/108 (12%)
Query: 117 KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE----EKEFK------MKEDKEKPVEKIRK 166
+ ++ + + ++ E + E + E++
Sbjct: 324 EALGITARVLRNEHSTQRLAYRDPETGKWFVPYVIEPSAGVDRGVLALLAEAFTREELPN 383
Query: 167 EEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFG 214
E+ + K + K+ L K + E + + K + +L G
Sbjct: 384 GEERIVLKLKPQLAPIKVAVIPLVKNRPEI--TEYAKRLKARLL-ALG 428
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli E24377A}
PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 28.2 bits (64), Expect = 5.3
Identities = 7/79 (8%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEE 168
K + + + ++ + + + +K+E ++ K + + + E
Sbjct: 228 KPRWDWQPEPVNEALN-ARVAALAEARLSDAYRITDKQERYA-QVDVIKSETIATL-LAE 284
Query: 169 KDSEKEKKSKDKDKKLKKE 187
++ E + + ++K
Sbjct: 285 DETLDENELGEILHAIEKN 303
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 5.5
Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)
Query: 142 EKE--KKEEKEFKMKEDKEKPVEKIR 165
EK+ KK + K+ D P I+
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial
promoter opening, G-quartet, quadruplex, DNA binding;
2.10A {Thermus aquaticus} PDB: 3ugp_A 1ku2_A 3lev_A*
3les_A*
Length = 245
Score = 27.9 bits (62), Expect = 5.7
Identities = 17/105 (16%), Positives = 33/105 (31%)
Query: 119 KDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSK 178
+ +I + +EE + + E+ E K+ E E IR+ +
Sbjct: 10 RQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARI 69
Query: 179 DKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKR 223
K LK++ K +E + K + E +
Sbjct: 70 QKIPGLKEKPDPKTVEEVDGKLKSLPKELKRYLHIAREGEAARQH 114
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 28.4 bits (64), Expect = 5.9
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 155 EDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFG 214
DK +P K +K KK K K+ ++LKK+ + E+ K G
Sbjct: 7 SDKYEPAATSENATKSKKKGKKDKIDKKR-DLDELKKEVSMDDHKLSLDELHNKY----G 61
Query: 215 TDMEE 219
TD+
Sbjct: 62 TDLTR 66
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil
(dimeric, parallel), familial hypertrophic
cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo
sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Length = 129
Score = 27.2 bits (60), Expect = 5.9
Identities = 16/97 (16%), Positives = 50/97 (51%)
Query: 91 KKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKE 150
+ + EK + ++K+ ++ + ++ D + ++ E++ E+ + + K + E
Sbjct: 23 TRLKEALEKSEARRKELEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLE 82
Query: 151 FKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKE 187
K+KE ++ ++ + + K++K +D+ +LK++
Sbjct: 83 AKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRD 119
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 28.2 bits (62), Expect = 5.9
Identities = 9/67 (13%), Positives = 23/67 (34%)
Query: 142 EKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSH 201
EKE E + E ++ ++ + + + KK K E +
Sbjct: 293 EKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVG 352
Query: 202 EKEVIPK 208
++++ +
Sbjct: 353 TEQLVAE 359
>3c64_A Pfemp1 variant 2 of strain MC; alpha-helical, three-helix bundle,
CD36-binding protein, cell adhesion, CD36-binding
protein,cell adhesion; HET: PG4; 2.40A {Plasmodium
falciparum}
Length = 179
Score = 27.7 bits (61), Expect = 5.9
Identities = 14/110 (12%), Positives = 30/110 (27%)
Query: 94 HKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKM 153
KK E KIK K+ D + + + + + + E K +
Sbjct: 58 QKKTEWGKIKDHFRKQKDIPKDWTHDDFLQTLLMKDLLLEIIQDTYGDANEIKRIEALLE 117
Query: 154 KEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
+ + KL + + K+ K + + +
Sbjct: 118 QAGVGGIDFAALAGLYTKGFVAEKDTTIDKLLQHEQKEADKCLKTHTDDT 167
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 28.4 bits (64), Expect = 6.1
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIP 207
+ +++ + + P K S+K+ +K K E +KK+ + + E+
Sbjct: 4 AENYELYQVELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEINDHQLSVAELEQ 63
Query: 208 KL 209
K
Sbjct: 64 KY 65
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 27.9 bits (62), Expect = 6.1
Identities = 10/88 (11%), Positives = 33/88 (37%)
Query: 96 KKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKE 155
K + I +KK++ D K +K+ + +++ ++ + E ++ +
Sbjct: 229 KSYDQWITRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEINK 288
Query: 156 DKEKPVEKIRKEEKDSEKEKKSKDKDKK 183
+E ++++K + +
Sbjct: 289 RDGAYIELCVCSVEEAKKNTQEVVTNVD 316
>3avr_A Lysine-specific demethylase 6A; cupin superfamily,
TRI/dimethyllysine demethylase, oxidoredu structural
protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens}
PDB: 3avs_A*
Length = 531
Score = 28.3 bits (62), Expect = 6.2
Identities = 25/181 (13%), Positives = 64/181 (35%), Gaps = 22/181 (12%)
Query: 9 QPLVHPPGTPPPSKMKDKVSPKDKTSPKEKMSSKEKTSPKEKEYSKVKDVELGVTPMVPN 68
P PP +P P KDK++P + E + ++ P ++ + + V +
Sbjct: 48 CPPPRPPSSPYPPLPKDKLNPPTPSIYLE--NKRDAFFPPLHQFCTNPNNPVTVIRGLAG 105
Query: 69 IVKVT----SSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKK 124
+K+ S++ L E + ++ + + + +N + KK
Sbjct: 106 ALKLDLGLFSTKTLVEANNEHMVEVRTQLLQPAD----------------ENWDPTGTKK 149
Query: 125 IDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKL 184
I + K + + +E +E++++ K + + + + + +
Sbjct: 150 IWHCESNRSHTTIAKYAQYQASSFQESLREENEKRSHHKDHSDSESTSSDNSGRRRKGPF 209
Query: 185 K 185
K
Sbjct: 210 K 210
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding
protein; HET: HC3; 1.50A {Saccharomyces cerevisiae}
SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A*
3spw_A* 1zi7_A
Length = 438
Score = 28.0 bits (62), Expect = 6.6
Identities = 18/90 (20%), Positives = 31/90 (34%), Gaps = 7/90 (7%)
Query: 121 KEKKIDK-EKEKGKKEEKEKKEEKEKKEEKE------FKMKEDKEKPVEKIRKEEKDSEK 173
K + K K + EE +++ KE++ + FK + P E EKD
Sbjct: 329 KLGDFNLIAKTKTELEETQRELRKEEEAKGISWQRRWFKDFDYSVTPEEGALVPEKDDTF 388
Query: 174 EKKSKDKDKKLKKEKLKKKKKEKERSSHEK 203
K + + K +KE +
Sbjct: 389 LKLASALNLSTKNAPSGTLVGDKEDRKEDL 418
>1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication,
transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1
c.120.1.2 PDB: 1mc8_A
Length = 340
Score = 28.0 bits (62), Expect = 6.7
Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 113 KIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSE 172
+I KD K K+ + KE + ++ E+ + K +E D
Sbjct: 252 EIVRHSKDPLAKFQKQSDVDLYAIKEFFLNPPVTDNYNLVWRDPDEEGILKFLCDEHDF- 310
Query: 173 KEKKSKDKDKKLKKEKLKKKKK 194
E++ K+ ++LKK K+
Sbjct: 311 SEERVKNGLERLKKAIKSGKQS 332
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 27.7 bits (61), Expect = 7.0
Identities = 8/61 (13%), Positives = 17/61 (27%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEE 148
+KK K+K K + K K + + + + + E +
Sbjct: 296 SEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKTYYPYGDYSS 355
Query: 149 K 149
Sbjct: 356 I 356
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2,
initiation factor 2 alpha subunit, initiation factor 2
beta subunit; 2.80A {Sulfolobus solfataricus} PDB:
2aho_B 3v11_B*
Length = 266
Score = 27.6 bits (61), Expect = 7.3
Identities = 19/84 (22%), Positives = 40/84 (47%)
Query: 103 KKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVE 162
K K+ +D K K K ++D+ K K+ +++ +K+ ++K + +K +E
Sbjct: 49 KWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTDDERRKKNLQWKKIQRLDKILE 108
Query: 163 KIRKEEKDSEKEKKSKDKDKKLKK 186
+ ++ K SEK+ + K K
Sbjct: 109 LVSQKLKLSEKDAWEQVAWKLEAK 132
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA
complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP:
c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A*
2pyj_A* 2pyl_A* 2pzs_A*
Length = 575
Score = 27.9 bits (61), Expect = 7.3
Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 14/96 (14%)
Query: 63 TPMVPNIVKVTSSEDLGEIKKDKSIKK--------------DKKTHKKKEKEKIKKKKDK 108
T + I + + LG + + K+ K+ K + D
Sbjct: 465 TEIPDVIKDIVDPKKLGYWAHESTFKRAKYLRQKTYIQDIYMKEVDGKLVEGSPDDYTDI 524
Query: 109 KDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKE 144
K K +K++ E K K K + +
Sbjct: 525 KFSVKCAGMTDKIKKEVTFENFKVGFSRKMKPKPVQ 560
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell
adhesion; NMR {Homo sapiens} PDB: 2p03_A
Length = 323
Score = 27.8 bits (61), Expect = 7.5
Identities = 21/147 (14%), Positives = 52/147 (35%), Gaps = 4/147 (2%)
Query: 78 LGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKE-KDKEKKIDKEKEKGKKEE 136
L + + + I ++ + K + + K K + ++ + +G E
Sbjct: 156 LETLSRTEEIHENVISPSDLSDIKGSVLHSRHTELKEKLRSINQGLDRLRRVSHQGYSTE 215
Query: 137 KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEK 196
E +E + + +K +E R+E K E + + + +K + +K + +
Sbjct: 216 AEFEEPRVIDLWDLAQSANLTDKELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAE 275
Query: 197 ERSSHEKEVIPKLTFKFGTDMEEKTKR 223
E+ + +E +TK
Sbjct: 276 SVGDGERVSRSREKHA---LLEGRTKE 299
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 27.5 bits (60), Expect = 7.8
Identities = 13/58 (22%), Positives = 21/58 (36%)
Query: 97 KEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKKEEKEFKMK 154
K K D+ ++D K K+ + GKK K +K + + MK
Sbjct: 259 PASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMK 316
Score = 27.5 bits (60), Expect = 9.1
Identities = 14/68 (20%), Positives = 21/68 (30%)
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
+ K + KK + + E KE + K+ K +K K K L K
Sbjct: 250 SKFLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAK 309
Query: 187 EKLKKKKK 194
K
Sbjct: 310 VDKSGMKS 317
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 27.6 bits (62), Expect = 7.8
Identities = 8/44 (18%), Positives = 19/44 (43%)
Query: 148 EKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLKK 191
E + + + + + DS K +++ D +KK + + K
Sbjct: 231 ENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKV 274
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural
genomics/proteomics initiativ structural genomics,
ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Length = 967
Score = 28.0 bits (62), Expect = 7.8
Identities = 24/135 (17%), Positives = 52/135 (38%), Gaps = 15/135 (11%)
Query: 110 DKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEKK-------EEKEFKMKEDKEKPVE 162
++ + +E+ I E K+ + K E K+ + K + EK
Sbjct: 824 VEEWWNETIEAEEEFIRSVMEDIKEIIEVAKIENAKRAYIYTAEDWKWKVAEVVSEKRDF 883
Query: 163 KIRKEEKDSEKEKKSKDKDKKLKKEKLKKKKKEKERSSHEKEVIPKLTFKFGTDMEEKTK 222
K EE + E + K+ +KL K++ + +E++ + + +E +
Sbjct: 884 KSSMEELMKDSEIRKHGKEVAKIVQKLIKERTFDVKRINEEKAL--------REAKEFME 935
Query: 223 RESSPKIVIKPVKSP 237
+E +I+I P +
Sbjct: 936 KELGIEIIINPTEDK 950
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 27.8 bits (63), Expect = 7.9
Identities = 10/73 (13%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 85 KSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEK-----KIDKEKEKGKKEEKEK 139
+ K+ + ++ + IK K I K ++K + K+K
Sbjct: 238 EHAAKEPFAFEPEDTDAIKAKMKDLVGADIAAAYKIQKKQDRYEAVGAAKKKAIAALGLS 297
Query: 140 KEEKEKKEEKEFK 152
E + +
Sbjct: 298 DENPTGYDPLKLG 310
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 27.7 bits (62), Expect = 8.1
Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 12/110 (10%)
Query: 77 DLGEIKKDKSIKK-DKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKE 135
LGE D K+ ++ I ++ D I+ K K +
Sbjct: 100 LLGESTTD--WKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNR 157
Query: 136 E----KEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKD 181
+ + +K VE +R E + E + K +
Sbjct: 158 ASLAAGPMVKWAIAQLNYADMLKR-----VEPLRNELQKLEDDAKDNQQK 202
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease,
UBL conjugation pathway deubiquitinating enzyme, DUB,
zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB:
3n3k_A
Length = 396
Score = 27.5 bits (61), Expect = 8.2
Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 24/75 (32%)
Query: 259 CPACGVQ----D---DGSLPMIGCDGCDAWYHWVCVGLVAEPETSD----WFCPKCSKVD 307
C C + + SLP+ C+ L ++ E ++C C
Sbjct: 222 CLTCHKKSRTFEAFMYLSLPL---ASTSKCTLQDCLRLFSKEEKLTDNNRFYCSHC---- 274
Query: 308 EGSRKEKKKRGRKKK 322
+ +R KK
Sbjct: 275 ------RARRDSLKK 283
>4dvz_A Cytotoxicity-associated immunodominant antigen; oncoprotein; 3.19A
{Helicobacter pylori}
Length = 569
Score = 27.5 bits (60), Expect = 8.7
Identities = 21/146 (14%), Positives = 53/146 (36%)
Query: 67 PNIVKVTSSEDLGEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDKEKKID 126
P++ + + + ++K K + + K +K+ K N K +
Sbjct: 286 PDLNNLAITSFVRRNLENKLTAKGLSLQEANKLIKDFLSSNKELAGKALNFNKAVAEAKS 345
Query: 127 KEKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
K+ ++ E+ +K E K E K + + + + + KD+ L
Sbjct: 346 TGNYDEVKKAQKDLEKSLRKREHLEKEVEKKLESKSGNKNKMEAKAQANSQKDEIFALIN 405
Query: 187 EKLKKKKKEKERSSHEKEVIPKLTFK 212
++ + + + + K + +L+ K
Sbjct: 406 KEANRDARAIAYTQNLKGIKRELSDK 431
>3g3o_A Vacuolar transporter chaperone 2; polyphosphate polymerase,
polyphosphate kinase, VTC complex, tunnel enzyme,
membrane, phosphoprotein; 2.10A {Saccharomyces
cerevisiae}
Length = 392
Score = 27.5 bits (60), Expect = 8.9
Identities = 16/98 (16%), Positives = 40/98 (40%), Gaps = 15/98 (15%)
Query: 79 GEIKKDKSIKKDKKTHKKKEKEKIKKKKDKKDKDKIKNKEKDK-----------EKKIDK 127
G++ I +KKT E K + D K++ K+K +++ K
Sbjct: 149 GQLSDKPDIFLEKKTLI----EDEATGKSEFDLTKLQLKQKFINGFIFEGDKKFKEQTLK 204
Query: 128 EKEKGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIR 165
+ ++ ++ + +E E + + +++ +PV +
Sbjct: 205 KLKESGTAGRDLERLEEDFSEIQNFIIKNELQPVFRTV 242
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 27.3 bits (60), Expect = 9.4
Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 7/100 (7%)
Query: 89 KDKKTHKKKEKEKIKKKKDKKDKDKIKN-KEKDKEKKIDKEKEKGKKEEKEKKEEKEKKE 147
+ + K + I++ + D + I +EKK + K+E+K KE+++ +
Sbjct: 83 ESWREILDKRQHPIRRL-ELCDFEPIYQWHLVQREKK----LSRTKEEKKAIKEKQDAEA 137
Query: 148 EKEFKMKED-KEKPVEKIRKEEKDSEKEKKSKDKDKKLKK 186
E D + + V R E + + KLK
Sbjct: 138 EPYRYCVWDGRREQVANFRVEPPGLFRGRGKHPLMGKLKV 177
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 26.5 bits (58), Expect = 9.4
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 98 EKEKIKKKKDKKDKDKIKNKEKDKEKKIDKEKEKGKKEEKEKKEEKEK 145
E EK+K K +DK KI++K + K +D + K+E + ++++ E
Sbjct: 35 EDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEG 82
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 27.5 bits (61), Expect = 9.8
Identities = 14/126 (11%), Positives = 44/126 (34%)
Query: 131 KGKKEEKEKKEEKEKKEEKEFKMKEDKEKPVEKIRKEEKDSEKEKKSKDKDKKLKKEKLK 190
G+KE+ +KE + + E+ + ++PV+ + ++ + + +
Sbjct: 15 FGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQPQAHTEAEAETFAADVVEV 74
Query: 191 KKKKEKERSSHEKEVIPKLTFKFGTDMEEKTKRESSPKIVIKPVKSPSPPPVAAADEYDT 250
++ + + + + + E E + + V + + P E +T
Sbjct: 75 TEQVAESEKAQPEAEVVAQPEPVVEETPEPVAIEREELPLPEDVNAEAVSPEEWQAEAET 134
Query: 251 GDSKQV 256
+ +
Sbjct: 135 VEIVEA 140
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.307 0.128 0.367
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,864,592
Number of extensions: 356622
Number of successful extensions: 4561
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3182
Number of HSP's successfully gapped: 992
Length of query: 410
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 314
Effective length of database: 4,021,377
Effective search space: 1262712378
Effective search space used: 1262712378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 58 (26.0 bits)