BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5829
(147 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5NVM7|S61A2_PONAB Protein transport protein Sec61 subunit alpha isoform 2 OS=Pongo
abelii GN=SEC61A2 PE=2 SV=1
Length = 476
Score = 202 bits (514), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 96/119 (80%), Positives = 107/119 (89%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+V+F GN VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G L
Sbjct: 297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIL 355
>sp|Q9JLR1|S61A2_MOUSE Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus
musculus GN=Sec61a2 PE=2 SV=3
Length = 476
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/116 (81%), Positives = 106/116 (91%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
LVSNLYVISQML+V+F GN VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct: 297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352
>sp|Q9H9S3|S61A2_HUMAN Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo
sapiens GN=SEC61A2 PE=2 SV=3
Length = 476
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/116 (81%), Positives = 106/116 (91%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
LVSNLYVISQML+V+F GN VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct: 297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352
>sp|Q2KHX4|S61A2_BOVIN Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos
taurus GN=SEC61A2 PE=2 SV=3
Length = 476
Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 95/116 (81%), Positives = 106/116 (91%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 131
LVSNLYVISQML+V+F GN VNLLG+WADV GGGPAR+YP+GGLCYYLSPPE++G
Sbjct: 297 LVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMG 352
>sp|Q90ZM2|S61A1_DANRE Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio
GN=sec61al1 PE=2 SV=3
Length = 476
Score = 193 bits (491), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 91/119 (76%), Positives = 102/119 (85%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GGPARAYP+GGLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVL 355
>sp|Q90YL4|S61A2_DANRE Protein transport protein Sec61 subunit alpha-like 2 OS=Danio rerio
GN=sec61al2 PE=2 SV=3
Length = 476
Score = 192 bits (489), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 102/119 (85%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GGPARAYP+GGLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYLSPPESFGTVL 355
>sp|Q98SN9|S61A1_ONCMY Protein transport protein Sec61 subunit alpha isoform A
OS=Oncorhynchus mykiss GN=sec61aa PE=2 SV=3
Length = 476
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 102/119 (85%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLLNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GGPARAYP+GGLCY+LSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYFLSPPESFGSVL 355
>sp|Q8AY32|SC61A_GADOC Protein transport protein Sec61 subunit alpha OS=Gadus ogac
GN=sec61a PE=2 SV=3
Length = 476
Score = 191 bits (486), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 101/119 (84%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GGPARAYP+GGLCYY SPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYFSPPESFGSVL 355
>sp|P61621|S61A1_RAT Protein transport protein Sec61 subunit alpha isoform 1 OS=Rattus
norvegicus GN=Sec61a1 PE=2 SV=2
Length = 476
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 103/119 (86%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN+ V+LLG W+D GGPARAYP+GGLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVL 355
>sp|Q5R5L5|S61A1_PONAB Protein transport protein Sec61 subunit alpha isoform 1 OS=Pongo
abelii GN=SEC61A1 PE=2 SV=3
Length = 476
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 103/119 (86%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN+ V+LLG W+D GGPARAYP+GGLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVL 355
>sp|P61620|S61A1_MOUSE Protein transport protein Sec61 subunit alpha isoform 1 OS=Mus
musculus GN=Sec61a1 PE=2 SV=2
Length = 476
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 103/119 (86%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN+ V+LLG W+D GGPARAYP+GGLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVL 355
>sp|P61619|S61A1_HUMAN Protein transport protein Sec61 subunit alpha isoform 1 OS=Homo
sapiens GN=SEC61A1 PE=1 SV=2
Length = 476
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 103/119 (86%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN+ V+LLG W+D GGPARAYP+GGLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVL 355
>sp|Q5EA68|S61A1_BOVIN Protein transport protein Sec61 subunit alpha isoform 1 OS=Bos
taurus GN=SEC61A1 PE=2 SV=3
Length = 476
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 103/119 (86%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN+ V+LLG W+D GGPARAYP+GGLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVL 355
>sp|Q8AY33|SC61A_BORSA Protein transport protein Sec61 subunit alpha OS=Boreogadus saida
GN=sec61a PE=2 SV=3
Length = 476
Score = 191 bits (486), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 102/119 (85%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GGPARAYP+GGLCY+LSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFIVNLLGTWSDTSTGGPARAYPVGGLCYFLSPPESFGSVL 355
>sp|Q98SN8|S61A2_ONCMY Protein transport protein Sec61 subunit alpha isoform B
OS=Oncorhynchus mykiss GN=sec61ab PE=2 SV=3
Length = 476
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 100/119 (84%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + +LATV VF +VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLLATVFVFGVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GGPARAYP+GGLCYY SPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPVGGLCYYFSPPESFGSVL 355
>sp|Q7T278|SC61A_HARAN Protein transport protein Sec61 subunit alpha OS=Harpagifer
antarcticus GN=sec61a PE=2 SV=3
Length = 476
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 101/119 (84%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GGPARAYP+ GLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVL 355
>sp|Q7T277|SC61A_DISMA Protein transport protein Sec61 subunit alpha OS=Dissostichus
mawsoni GN=sec61a PE=2 SV=3
Length = 476
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 101/119 (84%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GGPARAYP+ GLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVL 355
>sp|Q8AY36|SC61A_PAGBO Protein transport protein Sec61 subunit alpha OS=Pagothenia
borchgrevinki GN=sec61a PE=2 SV=3
Length = 476
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 101/119 (84%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GGPARAYP+ GLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVL 355
>sp|Q8AY35|SC61A_NOTAN Protein transport protein Sec61 subunit alpha OS=Notothenia
angustata GN=sec61a PE=2 SV=3
Length = 476
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 101/119 (84%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GGPARAYP+ GLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVL 355
>sp|Q8AY34|SC61A_HEMAM Protein transport protein Sec61 subunit alpha OS=Hemitripterus
americanus GN=sec61a PE=2 SV=3
Length = 476
Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 101/119 (84%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GGPARAYP+ GLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVL 355
>sp|P38377|S61A1_CANFA Protein transport protein Sec61 subunit alpha isoform 1 OS=Canis
familiaris GN=SEC61A1 PE=1 SV=3
Length = 476
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 88/119 (73%), Positives = 103/119 (86%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++AT+ VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN+ V+LLG W+D GGPARAYP+GGLC+YLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVL 355
>sp|Q8AY31|SC61A_BOVVA Protein transport protein Sec61 subunit alpha OS=Bovichtus
variegatus GN=sec61a PE=2 SV=3
Length = 476
Score = 187 bits (476), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 89/119 (74%), Positives = 100/119 (84%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + ++ATV VFA+VIYFQGFRVDLPIKSARYRGQY++YPIKLFYTSNIPIILQSA
Sbjct: 237 QNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSA 296
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLYVISQML+ +F GN VNLLG W+D GPARAYP+ GLCYYLSPPE+ G L
Sbjct: 297 LVSNLYVISQMLSTRFSGNFLVNLLGTWSDATTSGPARAYPVAGLCYYLSPPESFGSVL 355
>sp|Q25147|SC61A_HALRO Protein transport protein Sec61 subunit alpha OS=Halocynthia
roretzi PE=2 SV=1
Length = 475
Score = 182 bits (461), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/104 (83%), Positives = 94/104 (90%), Gaps = 1/104 (0%)
Query: 26 ATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQ 85
AT+LVF IVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVS LYVISQ
Sbjct: 247 ATILVFGIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSGLYVISQ 306
Query: 86 MLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPEN 129
MLA++F GN F+ LLG W DV GGGPAR+YP+ LCYYLSPPE+
Sbjct: 307 MLAIRFRGNFFIGLLGVWEDVEGGGPARSYPV-ALCYYLSPPES 349
>sp|Q54XK2|SC61A_DICDI Protein transport protein Sec61 subunit alpha OS=Dictyostelium
discoideum GN=sec61a PE=3 SV=1
Length = 475
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/119 (58%), Positives = 81/119 (68%), Gaps = 2/119 (1%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN +LATVL+F +VIYFQGFRVDLP+KS R GQ +YPIKLFYTSNIPIILQSA
Sbjct: 238 QNLPNITNLLATVLIFMVVIYFQGFRVDLPVKSTRVSGQQGTYPIKLFYTSNIPIILQSA 297
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
LVSNLY ISQ+L +F NI VNL G W + P+ GL YY+S P N+ L
Sbjct: 298 LVSNLYFISQLLYRRFPDNILVNLFGAWRT--SEYSQQMIPVSGLTYYISSPNNMSAVL 354
>sp|Q6BN08|SC61A_DEBHA Protein transport protein SEC61 subunit alpha OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=SEC61 PE=3 SV=1
Length = 479
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
++ATV VF +V+Y QGFR++LPIKS R RG Y YPI+LFYTSNIPI+LQSAL SN+++I
Sbjct: 247 LIATVFVFLLVVYLQGFRIELPIKSTRQRGPYGLYPIRLFYTSNIPIMLQSALSSNIFII 306
Query: 84 SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135
SQML V++ NIFV +LG W G A+ Y + GL YY+ PP + LL
Sbjct: 307 SQMLFVRWPNNIFVKILGSWDTRQGA--AQLYAVSGLAYYIQPPLSFTEALL 356
>sp|Q9P8E3|SC61A_CANAL Protein transport protein SEC61 subunit alpha OS=Candida albicans
(strain SC5314 / ATCC MYA-2876) GN=SEC61 PE=3 SV=2
Length = 479
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
+LAT+LVF V+Y QGFR++LP+KS R RG Y SYPI+LFYTSNIPI+L+SAL SN+++I
Sbjct: 247 LLATLLVFFAVVYLQGFRIELPMKSTRQRGPYGSYPIRLFYTSNIPIMLESALASNIFII 306
Query: 84 SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135
SQ+L +++ N+FV LLG W G ++ Y GGL YY+ PP N LL
Sbjct: 307 SQLLFMRWPNNLFVKLLGTWD--ARAGSSQLYANGGLAYYIQPPFNFTDALL 356
>sp|P78979|SC61A_YARLI Protein transport protein SEC61 subunit alpha OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=SEC61 PE=3 SV=2
Length = 471
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/111 (54%), Positives = 79/111 (71%), Gaps = 2/111 (1%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
++ TV +FA VIY QGFRVD+P+KS++ RG Y +PIKLFYTSN+PI+LQSAL SN+++I
Sbjct: 247 LVTTVAIFAAVIYLQGFRVDIPVKSSKQRGPYGVFPIKLFYTSNLPIMLQSALTSNIFII 306
Query: 84 SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
SQML KF N+ V LLG W G G + +P+ G+ YY+ PP N L
Sbjct: 307 SQMLFKKFPTNVLVRLLGVWD--GREGMQQLFPVSGIAYYMQPPFNAKEAL 355
>sp|Q870W0|SC61A_NEUCR Protein transport protein SEC61 subunit alpha OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=sec-61 PE=3 SV=1
Length = 476
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 83/120 (69%), Gaps = 2/120 (1%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN + +LAT++VFA VIY QGFRV++P+KS+R RG SYPI+LFYTSN+PI+LQSA
Sbjct: 239 QNLPNIMNLLATLVVFAAVIYLQGFRVEIPVKSSRQRGARGSYPIRLFYTSNMPIMLQSA 298
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135
L SN+++ISQML +F N+ V L G W G A+ + GL YY+SPP N LL
Sbjct: 299 LSSNVFLISQMLYSRFSENLLVRLFGVWE--AKEGTAQLSAVSGLVYYMSPPLNFKDALL 356
>sp|Q6CPY9|SC61A_KLULA Protein transport protein SEC61 subunit alpha OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=SEC61 PE=3 SV=1
Length = 480
Score = 118 bits (296), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 75/112 (66%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
+ +T+ VF V+Y QGFR +LPIKS R RGQY SYPIKLFYTSN PI+LQSAL SN+++I
Sbjct: 246 VFSTIGVFLSVLYLQGFRYELPIKSTRTRGQYGSYPIKLFYTSNTPIMLQSALTSNIFLI 305
Query: 84 SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135
SQ+L +F N V LLG W G + + GL YY+ PP ++ LL
Sbjct: 306 SQILYQRFSTNPLVKLLGVWGTRAGAPAGQQVALSGLSYYIQPPFSVTDALL 357
>sp|Q752H7|SC61A_ASHGO Protein transport protein SEC61 subunit alpha OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=SEC61 PE=3 SV=1
Length = 480
Score = 112 bits (280), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 72/112 (64%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
+L+TV VF V+Y QGFR +LP++S R RGQ SYPIKLFYTSN PI+LQSAL SN+++
Sbjct: 246 VLSTVFVFLFVLYLQGFRYELPVRSTRTRGQVGSYPIKLFYTSNTPIMLQSALTSNIFLT 305
Query: 84 SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135
SQ+L KF N V +LG W + I GL YY+ PP + LL
Sbjct: 306 SQLLYQKFPNNPIVKMLGVWGTRSDAPYSPNAAISGLSYYIQPPFSFTEALL 357
>sp|Q96TW8|SC61A_HANAN Protein transport protein SEC61 subunit alpha OS=Hansenula anomala
GN=SEC61 PE=3 SV=1
Length = 479
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/120 (50%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Query: 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSA 75
QN +LAT +VF +V+Y QGFR ++P++S R RGQ YPIKLFYTSN PI+LQSA
Sbjct: 239 QNLPNIFQLLATFIVFFLVVYLQGFRYEIPVRSTRQRGQNGLYPIKLFYTSNTPIMLQSA 298
Query: 76 LVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135
L SN ++ISQML +F N V L G W G A+ + GL YY+ PP +L LL
Sbjct: 299 LTSNFFIISQMLFQRFPLNPVVRLFGVWD--ARPGSAQLFASNGLAYYIQPPLSLTEALL 356
>sp|Q6FRY3|SC61A_CANGA Protein transport protein SEC61 subunit alpha OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 /
NRRL Y-65) GN=SEC61 PE=3 SV=1
Length = 479
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 75/113 (66%), Gaps = 3/113 (2%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
++ATV VF V+Y QGFR +LP+KS + RGQ + YPIKLFYTSN PI+LQSAL SN+++I
Sbjct: 246 VIATVFVFLFVLYLQGFRYELPVKSTKVRGQMAIYPIKLFYTSNTPIMLQSALSSNIFLI 305
Query: 84 SQMLAVKFHGNIFVNLLGEWA-DVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135
SQ+L K+ N + L G W G GP P+ G+ YYL P +L LL
Sbjct: 306 SQILFQKYPSNPVIRLFGVWGIRPGTNGP--QVPLSGISYYLQPIGSLKMALL 356
>sp|P79088|SC61A_SCHPO Protein transport protein sec61 subunit alpha
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sec61 PE=2 SV=1
Length = 479
Score = 105 bits (262), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/137 (42%), Positives = 82/137 (59%), Gaps = 13/137 (9%)
Query: 3 CSCLSRSKFLSSLQNSKMAVMML----ATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSY 58
+ L ++ F S L +S++ + L AT+LVF +VIY Q FRV++PI+S ++RG S++
Sbjct: 229 AAALYQAFFRSGLTSSQIQLPNLWNFFATLLVFGVVIYLQDFRVEIPIRSQKFRGYRSTF 288
Query: 59 PIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIG 118
P+KL YTSN PI+LQSAL SNL+ S++L +F N V LG W
Sbjct: 289 PVKLLYTSNTPIMLQSALTSNLFFASRLLFNRFSSNFLVRFLGVWEQTA---------TS 339
Query: 119 GLCYYLSPPENLGHFLL 135
GL YYLSPP + L+
Sbjct: 340 GLSYYLSPPASFQDALI 356
>sp|P32915|SC61A_YEAST Protein transport protein SEC61 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SEC61 PE=1 SV=1
Length = 480
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 74/113 (65%), Gaps = 3/113 (2%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
+L TV +F V+Y QGFR +LPI+S + RGQ YPIKLFYTSN PI+LQSAL SN+++I
Sbjct: 247 VLMTVAIFLFVLYLQGFRYELPIRSTKVRGQIGIYPIKLFYTSNTPIMLQSALTSNIFLI 306
Query: 84 SQMLAVKFHGNIFVNLLGEWA-DVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135
SQ+L K+ N + L+G W G GP A + GL YY+ P +L LL
Sbjct: 307 SQILFQKYPTNPLIRLIGVWGIRPGTQGPQMA--LSGLAYYIQPLMSLSEALL 357
>sp|P38379|SC61A_PYRSA Protein transport protein Sec61 subunit alpha OS=Pyrenomonas salina
PE=2 SV=1
Length = 494
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 66/92 (71%), Gaps = 1/92 (1%)
Query: 36 YFQGFRVDLPIKSARYRGQYSS-YPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGN 94
YFQGF+V+LPI A+ +G YPIKLFYTSN+PIILQ+ALVSNLY ISQ+L ++ N
Sbjct: 261 YFQGFQVELPITPAKSKGMAGQFYPIKLFYTSNMPIILQTALVSNLYFISQILYKRYPEN 320
Query: 95 IFVNLLGEWADVGGGGPARAYPIGGLCYYLSP 126
I +++LG W + + P+GG+ YY+SP
Sbjct: 321 IIIHILGRWEEPEMSVSGQMRPVGGIAYYISP 352
>sp|P28542|SECY_HALMA Protein translocase subunit SecY OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=secY
PE=3 SV=2
Length = 487
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 64/111 (57%), Gaps = 10/111 (9%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
+ TVL+FA+V+Y + RV++P+ +AR +G +P+KL Y S +P+IL AL +N+ +
Sbjct: 249 LFTTVLIFAVVVYAESVRVEIPLSNARVKGARGRFPVKLIYASVLPMILVRALQANIQFL 308
Query: 84 SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134
++L + LG +A+ P GGL Y+L+P ++ G ++
Sbjct: 309 GRILNAQLGS--MPAFLGTYAN--------GQPTGGLFYFLAPIQSRGDWM 349
>sp|O42965|YGMH_SCHPO Uncharacterized protein C19G7.17 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC19G7.17 PE=4 SV=2
Length = 475
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 71/132 (53%), Gaps = 7/132 (5%)
Query: 4 SCLSRSKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLF 63
S L RS+ LS +Q L + VFA +Y R+D+PI+S+R RG ++P+KL
Sbjct: 236 SILFRSEGLSFVQ-------FLVCIAVFATFMYTLNIRIDVPIRSSRVRGVRQNFPLKLL 288
Query: 64 YTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYY 123
YTS IP+I +++S+L V + L ++ LL +++ + + +GGL Y+
Sbjct: 289 YTSVIPLIYFYSILSHLLVFAYALYSLCPNSLITRLLVQYSPIDTFAEHKLQLVGGLVYF 348
Query: 124 LSPPENLGHFLL 135
L PP L LL
Sbjct: 349 LYPPLGLSEALL 360
>sp|Q60175|SECY_METJA Protein translocase subunit SecY OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=secY PE=1 SV=2
Length = 436
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 17/125 (13%)
Query: 10 KFLSSL----QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYT 65
KFL+SL N + ++ T++VF +V+Y + RV++P+ R +G YPIK Y
Sbjct: 195 KFLNSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYV 254
Query: 66 SNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLS 125
SNIP+IL +AL +N+ Q+ + + + + +LG + GG A + G+ YYLS
Sbjct: 255 SNIPVILAAALFANI----QLWGLALY-RMGIPILGHYE----GGRA----VDGIAYYLS 301
Query: 126 PPENL 130
P L
Sbjct: 302 TPYGL 306
>sp|O59442|SECY_PYRHO Protein translocase subunit SecY OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=secY PE=3 SV=1
Length = 468
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 41/111 (36%), Positives = 60/111 (54%), Gaps = 16/111 (14%)
Query: 22 VMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQY--SSYPIKLFYTSNIPIILQSALVSN 79
+ + AT++VF +V+YF+ RV++P+ YRG YPIK Y SNIPIIL AL +N
Sbjct: 242 IAVTATIIVFLVVVYFESMRVEIPLG---YRGVTIRGRYPIKFLYVSNIPIILTFALYAN 298
Query: 80 LYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENL 130
+ + +++L H W +G P PIGG Y+ PP N+
Sbjct: 299 IQLWARVLDRFGH---------PW--LGRFDPVTGNPIGGFVLYVIPPRNI 338
>sp|Q8U019|SECY_PYRFU Protein translocase subunit SecY OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=secY PE=1
SV=1
Length = 468
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 16/109 (14%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQY--SSYPIKLFYTSNIPIILQSALVSNLY 81
++AT++VF IV+YF+ RV++P+ YRG SYPI+ Y SNIPIIL AL +N+
Sbjct: 244 VVATIVVFFIVVYFESMRVEIPLG---YRGVTVRGSYPIRFLYVSNIPIILTFALYANIQ 300
Query: 82 VISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENL 130
+ +++L H W +G P PI G Y+ PP N+
Sbjct: 301 LWARVLDRLGH---------PW--LGRFDPTTGSPISGFVLYVIPPRNI 338
>sp|Q9V1V8|SECY_PYRAB Protein translocase subunit SecY OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=secY PE=3 SV=1
Length = 468
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 16/109 (14%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPI--KSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLY 81
++AT++VF +V+YF+ RV++P+ + RG+Y PI+ Y SNIPIIL AL +N+
Sbjct: 244 VIATIIVFLVVVYFESMRVEIPLGYRGVTIRGRY---PIRFLYVSNIPIILTFALYANIQ 300
Query: 82 VISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENL 130
+ +++L H W +G P P+GG Y+ PP ++
Sbjct: 301 LWARVLDRLGH---------PW--LGTFDPTTGNPVGGFVLYVIPPRSI 338
>sp|Q9HPB1|SECY_HALSA Protein translocase subunit SecY OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=secY PE=3 SV=1
Length = 491
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 9/103 (8%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
+L T+ ++ +V+Y + RV++P+ AR +G +P+KL Y S +P+IL AL +N+ +
Sbjct: 249 LLTTLFIYVVVVYAESVRVEIPLSHARVKGARGRFPVKLIYASVLPMILVRALQANIQFL 308
Query: 84 SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSP 126
Q+L N + + W V GG GGL YYL+P
Sbjct: 309 GQIL------NSTLASMPTWLGVYGG---NGQVTGGLFYYLAP 342
>sp|Q9YDD0|SECY_AERPE Protein translocase subunit SecY OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=secY PE=3 SV=2
Length = 457
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 55/106 (51%), Gaps = 18/106 (16%)
Query: 26 ATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQ 85
T+ +++Y Q RV++PI S R++G S P++ Y +NIPI+L LVS+L ++ +
Sbjct: 236 TTLAAIILLVYLQAMRVEIPITSERFKGIRSRVPLQFIYVTNIPILLVGILVSDLLLVQR 295
Query: 86 MLAVKFHGNIFVNLLGEWADVGGGGPARAYPI-GGLCYYLSPPENL 130
+LA G +RAY I + YYLSPP +
Sbjct: 296 LLADYL-----------------GVESRAYQIYSSIVYYLSPPRGV 324
>sp|Q977V3|SECY_HALVD Protein translocase subunit SecY OS=Haloferax volcanii (strain ATCC
29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 /
VKM B-1768 / DS2) GN=secY PE=3 SV=2
Length = 489
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 56/109 (51%), Gaps = 10/109 (9%)
Query: 31 FAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVK 90
F IV+Y + RV++P+ AR +G +P+KL Y S +P+IL AL +N+ + + L
Sbjct: 256 FGIVVYAESVRVEIPLSHARVKGARGRFPVKLIYASVLPMILVRALQANIQFLGRFLNSS 315
Query: 91 FHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLLLLLL 139
+ G LG++ GGL YYL+P ++ ++ L L
Sbjct: 316 WVG--MPAWLGQYTS--------GQVTGGLLYYLAPIQSRSDWMWFLGL 354
>sp|O28377|SECY_ARCFU Protein translocase subunit SecY OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=secY PE=3 SV=1
Length = 493
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 13/103 (12%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
++ T + +V++F+G RV++P+ A RG +PIKL Y S +P+I AL +N+ +
Sbjct: 249 LITTAAIILLVVFFEGTRVEIPLAHAVARGARGRFPIKLIYASVLPMIFVRALQANVVAL 308
Query: 84 SQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSP 126
Q+L + V + GE+ + + GL ++L P
Sbjct: 309 GQVLHAR-----GVTIFGEFVN--------GKAVSGLMFFLQP 338
>sp|O26134|SECY_METTH Protein translocase subunit SecY OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=secY PE=3 SV=1
Length = 456
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 17/116 (14%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSAR----YRGQYSSYPIKLFYTSNIPIILQSALVSN 79
+LA + VF +V+Y + RV++PI RG YP++ Y SN+P+IL SAL+ N
Sbjct: 229 VLALIAVFLVVVYAESMRVEIPISMGGGKRLSRGAVGKYPLRFIYASNMPVILTSALLLN 288
Query: 80 LYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135
+ Q+LA N+F L G A + GL Y L+ P ++ +L
Sbjct: 289 V----QLLA-----NVFQKLGYPILGTVSNGQA----VDGLAYLLTAPRSIDALIL 331
>sp|P28541|SECY_METVA Protein translocase subunit SecY OS=Methanococcus vannielii GN=secY
PE=3 SV=1
Length = 438
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 66/131 (50%), Gaps = 19/131 (14%)
Query: 10 KFLSSLQNSKMAVM------MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLF 63
KF S++ + + +L+T+ VF +V+Y + RV++P+ R +G YPIK
Sbjct: 194 KFFSAMSVGSLGIAFEYILPILSTLFVFLVVVYVESIRVEIPLAHGRVKGAVGKYPIKFI 253
Query: 64 YTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYY 123
Y SN+P+IL +AL +N+ + F + +LG++++ + G+ YY
Sbjct: 254 YVSNLPVILAAALFANIQLWGM-----FLDRMGYPILGQYSN--------GTAVSGIAYY 300
Query: 124 LSPPENLGHFL 134
S P + + +
Sbjct: 301 FSTPYGISNII 311
>sp|P38353|SSH1_YEAST Sec sixty-one protein homolog OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SSH1 PE=1 SV=1
Length = 490
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 49/98 (50%), Gaps = 8/98 (8%)
Query: 36 YFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVIS----QMLAVKF 91
Y Q RV+LPI+S R RG + YPIKL YT + ++ ++ +++ + Q++A
Sbjct: 262 YLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNE 321
Query: 92 HGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPEN 129
+I ++G + + +P+ L+PP +
Sbjct: 322 PTHIICKIMGHYENANNLLAVPTFPLS----LLAPPTS 355
>sp|P49978|SECY_SULAC Protein translocase subunit SecY OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=secY PE=3 SV=1
Length = 463
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 37/63 (58%)
Query: 24 MLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVI 83
++ATV + +++Y + +P+ + R RG ++ P+ Y S+IP+I S L +++ +
Sbjct: 241 LIATVGLTILIVYLVNTNIYIPVTTQRLRGIRTTVPLNFLYVSSIPVIFVSVLGADIQLF 300
Query: 84 SQM 86
+ +
Sbjct: 301 ASL 303
>sp|Q9UX84|SECY_SULSO Protein translocase subunit SecY OS=Sulfolobus solfataricus (strain
ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=secY PE=3
SV=1
Length = 469
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 36 YFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQM 86
Y +++P+ S + RG + P+ Y S+IP+I + L S++ + + +
Sbjct: 257 YLTTMTIEIPVTSQKLRGIRRTIPLNFLYVSSIPVIFVAVLGSDIQLFASL 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.329 0.144 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,318,312
Number of Sequences: 539616
Number of extensions: 1768445
Number of successful extensions: 5079
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5006
Number of HSP's gapped (non-prelim): 64
length of query: 147
length of database: 191,569,459
effective HSP length: 106
effective length of query: 41
effective length of database: 134,370,163
effective search space: 5509176683
effective search space used: 5509176683
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)