Query psy5829
Match_columns 147
No_of_seqs 105 out of 300
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 18:59:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5829.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5829hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1373|consensus 100.0 1.1E-44 2.3E-49 315.5 11.5 124 8-135 233-356 (476)
2 PTZ00219 Sec61 alpha subunit; 99.9 1.1E-23 2.3E-28 187.9 8.6 116 17-134 241-356 (474)
3 PRK08568 preprotein translocas 99.8 7.7E-20 1.7E-24 162.7 6.8 107 16-133 229-335 (462)
4 COG0201 SecY Preprotein transl 99.5 3.7E-14 8.1E-19 126.1 7.3 69 20-88 219-290 (436)
5 TIGR00967 3a0501s007 preprotei 99.4 6.1E-13 1.3E-17 116.9 6.1 74 17-90 198-276 (410)
6 PF00344 SecY: SecY translocas 99.2 4.6E-11 1E-15 102.4 7.2 71 21-91 149-223 (346)
7 CHL00161 secY preprotein trans 99.1 1.9E-10 4.1E-15 101.5 6.8 66 26-91 209-280 (417)
8 PRK12417 secY preprotein trans 99.0 1.1E-09 2.5E-14 96.5 8.5 80 15-94 183-267 (404)
9 PRK09204 secY preprotein trans 99.0 7.3E-10 1.6E-14 98.1 7.0 63 24-86 220-289 (426)
10 TIGR02920 acc_sec_Y2 accessory 98.9 4E-09 8.7E-14 92.6 8.0 70 25-94 188-260 (395)
11 PRK12907 secY preprotein trans 98.3 2.3E-06 5E-11 76.4 6.9 61 27-87 224-292 (434)
12 COG1281 Disulfide bond chapero 33.2 22 0.00048 30.8 1.2 17 2-19 235-251 (286)
13 PRK04989 psbM photosystem II r 25.2 77 0.0017 19.3 2.2 20 20-39 4-29 (35)
14 CHL00080 psbM photosystem II p 22.3 94 0.002 18.9 2.2 20 20-39 4-29 (34)
15 KOG1638|consensus 20.7 2.3E+02 0.005 24.3 5.0 79 57-135 99-203 (257)
16 KOG2888|consensus 20.6 56 0.0012 29.5 1.4 21 119-139 161-183 (453)
17 PRK01402 hslO Hsp33-like chape 20.3 53 0.0012 28.7 1.2 18 2-20 278-295 (328)
No 1
>KOG1373|consensus
Probab=100.00 E-value=1.1e-44 Score=315.48 Aligned_cols=124 Identities=62% Similarity=1.040 Sum_probs=116.8
Q ss_pred hhHHHHhhcCCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829 8 RSKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 87 (147)
Q Consensus 8 ~~~~~~a~~~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll 87 (147)
||+|.. |||||++++++|+++|++|+|+||||||+|+||+|+||++++||||||||||||||+|||+++|+|++||++
T Consensus 233 ~eAF~R--qnLPNl~nl~at~lif~iViYlQgfRVeLPirS~r~RG~~~~yPIKL~YTsn~pIilqsalvsni~~isqll 310 (476)
T KOG1373|consen 233 REAFYR--QNLPNLTNLLATVLIFLIVIYLQGFRVELPIRSTRARGQYGSYPIKLFYTSNMPIILQSALVSNIFVISQLL 310 (476)
T ss_pred HHHHHH--hcccHHHHHHHHHHHHHHHhhccceEEEeeecchhhcccCCccceEeeecCCcHHHHHHHHHHHHHHHHHHH
Confidence 566663 699999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccceeeecccceeccCCCCCCCccccceeeeeeCCCCCHHHHHH
Q psy5829 88 AVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFLL 135 (147)
Q Consensus 88 ~~~~~~~~~~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl~~~l~ 135 (147)
+++|++|++++++|+|++.++ ++++.|+||++||++||+|+.++++
T Consensus 311 ~~k~~~n~~v~llG~w~~~~~--~~~~~p~~glsyy~~pp~s~~~~~~ 356 (476)
T KOG1373|consen 311 YKKFPGNFLVRLLGVWEDSEG--GGRSMPVSGLSYYITPPESFGEALQ 356 (476)
T ss_pred HhhCCCceEEEEEeeeecCCC--CcccccccceeEecCChHHHHHHhh
Confidence 999999999999999998774 3688999999999999999998765
No 2
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=99.89 E-value=1.1e-23 Score=187.93 Aligned_cols=116 Identities=59% Similarity=1.026 Sum_probs=104.2
Q ss_pred CCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhcccee
Q psy5829 17 NSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIF 96 (147)
Q Consensus 17 ~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~~~ 96 (147)
++||++++++|++++++++|+|++|+|||+++.|.||.++.||||+.|+|+|||||+++++++++.++|++++.++++..
T Consensus 241 ~l~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~~~l~~~~~~~~~ 320 (474)
T PTZ00219 241 HLPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFSQILYRRFKNNFL 320 (474)
T ss_pred ccccHHHHHHHHHHHHhheeeeeeEEEEeeecccccCcCcccceeecccccHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999888888887
Q ss_pred eecccceeccCCCCCCCccccceeeeeeCCCCCHHHHH
Q psy5829 97 VNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134 (147)
Q Consensus 97 ~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl~~~l 134 (147)
++++|+|.+.+. ++++.|+||++||++||+++.+.+
T Consensus 321 ~~~l~~~~~~~~--~~~~~~v~gl~~~l~~p~~~~~~~ 356 (474)
T PTZ00219 321 INLLGQWQEVEY--SGQSVPVGGLAYYLSPPNSFSDII 356 (474)
T ss_pred cccccceecccc--ccccccchhHHhhcCCCcchhhhh
Confidence 889999964210 135679999999999999887555
No 3
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=99.79 E-value=7.7e-20 Score=162.72 Aligned_cols=107 Identities=36% Similarity=0.728 Sum_probs=94.5
Q ss_pred cCCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhccce
Q psy5829 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNI 95 (147)
Q Consensus 16 ~~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~~ 95 (147)
+++||+..++++++++++++|+|++|++|||+++|+||.++.+|||+.|+|+|||||+++++++.++++|.++++.
T Consensus 229 ~~l~~l~~~~~~~~i~~~~v~~q~~~~~IPI~~~k~~g~~s~iPiKln~aGvmPiIFassll~~p~~i~~~l~~~~---- 304 (462)
T PRK08568 229 TRGLLLLGLITTIVIFLIVVYLESMRVEIPLSHGRVRGARGRYPLKFIYVSVLPVILVRALQANIQLFGQLLQRLG---- 304 (462)
T ss_pred ccccHHHHHHHHHHHHHHheeEEeeEEEEEEEeccccCCCceeeEEecccCcHHHHHHHHHHHHHHHHHHHHhhcC----
Confidence 4679999999999999999999999999999999999999999999999999999999999999999988875431
Q ss_pred eeecccceeccCCCCCCCccccceeeeeeCCCCCHHHH
Q psy5829 96 FVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHF 133 (147)
Q Consensus 96 ~~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl~~~ 133 (147)
++++|+|++.+ ..|++|++||++||+++.++
T Consensus 305 -~~~~~~~~~~~------~~~~~~l~~~~~~p~~~~~~ 335 (462)
T PRK08568 305 -IPILGTYDSSG------ASPISGLAYYLSPPHSPYDW 335 (462)
T ss_pred -chhhhhccccc------ccchhHHHHHhCCCcchhhh
Confidence 47899997532 23899999999999886543
No 4
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=99.50 E-value=3.7e-14 Score=126.10 Aligned_cols=69 Identities=36% Similarity=0.619 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHHHHHHhhhcceEEeeecccc---ccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHh
Q psy5829 20 MAVMMLATVLVFAIVIYFQGFRVDLPIKSAR---YRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLA 88 (147)
Q Consensus 20 nL~~liaTi~vfl~ViYlq~~RVeIPI~s~r---~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~ 88 (147)
++..+++|++++.+|+|+|.+|+||||.++| .||+++.+|+|+.|+|+||+||+++++++...++|.+.
T Consensus 219 ~l~~~~~~l~ii~~vvyve~~~r~IPI~y~~~~~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~~~l~ 290 (436)
T COG0201 219 LLLLVLLTLAIIFLVVYVEQARRRIPIQYAKRQSYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIAQFLG 290 (436)
T ss_pred HHHHHHHHHHHHHHHHHhhheEEEeehhhhhhhhcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999999999999999999999999 99999999999999999999999999999988877554
No 5
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=99.37 E-value=6.1e-13 Score=116.87 Aligned_cols=74 Identities=42% Similarity=0.663 Sum_probs=68.4
Q ss_pred CCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccc-----cccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhh
Q psy5829 17 NSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRG-----QYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVK 90 (147)
Q Consensus 17 ~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG-----~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~ 90 (147)
.+|++..++++++++++++|+|+.|++||+++.|.|+ .++.+|||+.|+|+||+||+++++++++.++|.+.++
T Consensus 198 ~~~~~~~~~~~~~~~~~~v~~~~~~~~IPi~~~~~~~~~~~~~~~~iPiKln~aGvmPiIfassll~~p~~i~~~~~~~ 276 (410)
T TIGR00967 198 NLPFLLYLIATIIVFAVVVFVQQARRKIPIQSAKRQGGRRGSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSN 276 (410)
T ss_pred HHHHHHHHHHHHHHHHHHheeeeeEEEEEEEEhhhhcCCCCCccceeeeEeeccccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3678999999999999999999999999999998887 8899999999999999999999999999998887544
No 6
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=99.18 E-value=4.6e-11 Score=102.43 Aligned_cols=71 Identities=41% Similarity=0.647 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHhhhcceEEeeeccccc----cccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhh
Q psy5829 21 AVMMLATVLVFAIVIYFQGFRVDLPIKSARY----RGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKF 91 (147)
Q Consensus 21 L~~liaTi~vfl~ViYlq~~RVeIPI~s~r~----RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~ 91 (147)
+..++++++++++++|+|+.+++||+.+.|. ||.++.+|+|+.|+++||+||++++.++..++++.++..+
T Consensus 149 l~~~~~~l~~~~~~v~l~~~~~rIPi~~~~~~~~~~~~~~ylPikln~aG~mPiifa~sll~~p~~i~~~l~~~~ 223 (346)
T PF00344_consen 149 LIILIITLVVIALVVYLQEAERRIPIQYARIVNSSRGQSSYLPIKLNYAGVMPIIFASSLLSLPQYIAQFLNSQF 223 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEEEECEBBSSSB--SSSBCSCEEEETTSSTHHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred HHHHHHHHHHHHhheeeeeeEEEEEEEeccccccCcccceeeeeeccccccchHHHHHHHHHHHHHHHHhccCCC
Confidence 6799999999999999999999999999999 9999999999999999999999999999988888776543
No 7
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=99.09 E-value=1.9e-10 Score=101.48 Aligned_cols=66 Identities=27% Similarity=0.418 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhhcceEEeeeccccccc-----cccce-eeeeeeecchhHHHHHHHHHHHHHHHHHHhhhh
Q psy5829 26 ATVLVFAIVIYFQGFRVDLPIKSARYRG-----QYSSY-PIKLFYTSNIPIILQSALVSNLYVISQMLAVKF 91 (147)
Q Consensus 26 aTi~vfl~ViYlq~~RVeIPI~s~r~RG-----~~~~y-PIkLlYtSn~PIIl~sal~sni~~isqll~~~~ 91 (147)
++++++++++|+|..+.+||+.++|.|| .+..| |||+.|+|+||+||+++++++++.++|.+++++
T Consensus 209 ~~~~vi~~vv~~~~~~rrIPi~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~~~~~~~~ 280 (417)
T CHL00161 209 LFFITLIGIIFLQEAIRKIPLISAKQLGKSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLTNILLNQF 280 (417)
T ss_pred HHHHHHHHHHHhhcceEEEEEEEhhhhccccccCccceeeeehhccCchHHHHHHHHHHHHHHHHHHhcccc
Confidence 7888889999999999999999988777 45566 999999999999999999999999999876554
No 8
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=99.01 E-value=1.1e-09 Score=96.48 Aligned_cols=80 Identities=19% Similarity=0.344 Sum_probs=67.0
Q ss_pred hcCCccHHHHHHHHHHHHH--HHhhhcceEEeeec--cccccccccce-eeeeeeecchhHHHHHHHHHHHHHHHHHHhh
Q psy5829 15 LQNSKMAVMMLATVLVFAI--VIYFQGFRVDLPIK--SARYRGQYSSY-PIKLFYTSNIPIILQSALVSNLYVISQMLAV 89 (147)
Q Consensus 15 ~~~lPnL~~liaTi~vfl~--ViYlq~~RVeIPI~--s~r~RG~~~~y-PIkLlYtSn~PIIl~sal~sni~~isqll~~ 89 (147)
++..++...++++++++.+ ++|+|..+.+||++ +.+.|+.+++| |+|+.|+++||+||++++++..+.++|.++.
T Consensus 183 ~~~~~~~~~~~~~~~~~~i~~~v~~~~~~rrIPi~~~~~~~~~~~~sylPiKlN~aGvmPiIfassll~~p~~i~~~~~~ 262 (404)
T PRK12417 183 IDASHIVIILLILLVIITLFFLYFIELVEYRIPYNDIMNHNRFKMYSYLSIKLNPAGGMPIMYSMSLLVFPQYIIILILS 262 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhheEEEEEEEEhhhhccCCCCcceeeeecccccHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445777778888777777 99999999999999 44445567889 9999999999999999999999999998876
Q ss_pred hhccc
Q psy5829 90 KFHGN 94 (147)
Q Consensus 90 ~~~~~ 94 (147)
.++++
T Consensus 263 ~~~~~ 267 (404)
T PRK12417 263 IFPNN 267 (404)
T ss_pred cCCCc
Confidence 66654
No 9
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=99.00 E-value=7.3e-10 Score=98.08 Aligned_cols=63 Identities=29% Similarity=0.502 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhhhcceEEeeeccccc---c---ccccce-eeeeeeecchhHHHHHHHHHHHHHHHHH
Q psy5829 24 MLATVLVFAIVIYFQGFRVDLPIKSARY---R---GQYSSY-PIKLFYTSNIPIILQSALVSNLYVISQM 86 (147)
Q Consensus 24 liaTi~vfl~ViYlq~~RVeIPI~s~r~---R---G~~~~y-PIkLlYtSn~PIIl~sal~sni~~isql 86 (147)
++++++++++++|+|+.+++||+.+.|. | |.+..| |+|+.|+|+|||||+++++++...++|.
T Consensus 220 ~~~~~~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~ 289 (426)
T PRK09204 220 IVLFLAVIAFVVFVEQAQRRIPVQYAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIAQF 289 (426)
T ss_pred HHHHHHHHHHHheeeeeEEEEEEEehhhhccccccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999874 2 334455 9999999999999999999999888776
No 10
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=98.91 E-value=4e-09 Score=92.63 Aligned_cols=70 Identities=20% Similarity=0.306 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHhhhcceEEeeecccc--ccccccce-eeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhccc
Q psy5829 25 LATVLVFAIVIYFQGFRVDLPIKSAR--YRGQYSSY-PIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGN 94 (147)
Q Consensus 25 iaTi~vfl~ViYlq~~RVeIPI~s~r--~RG~~~~y-PIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~ 94 (147)
+.+++++..++|+|..+.+||+.+.+ .|+.+++| |+|+.|+|+||+||+++++++.+.+++.++..++++
T Consensus 188 ~~~~~~i~~~v~~~~~~~rIpv~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~~~l~~~~~~~ 260 (395)
T TIGR02920 188 LLTLVALFLLAFIERAEYRIPVNDISLHNRSNLMSYLPIKLNPAGGMMYMYVMSLLMLPQYIIILLGRIFPNS 260 (395)
T ss_pred HHHHHHHHHHHheecceEEEEEEEchhhccCCCCcccceEecccCcHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 34455555678888777777766544 67778897 999999999999999999999988888887766554
No 11
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=98.25 E-value=2.3e-06 Score=76.38 Aligned_cols=61 Identities=30% Similarity=0.502 Sum_probs=50.6
Q ss_pred HHHHHHHHHhhhcceEEeeeccc-------cccc-cccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829 27 TVLVFAIVIYFQGFRVDLPIKSA-------RYRG-QYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 87 (147)
Q Consensus 27 Ti~vfl~ViYlq~~RVeIPI~s~-------r~RG-~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll 87 (147)
.++++++++|+|..+.+||+.+. +.+| .++..|+|+-|.++||+||++++++....+.+.+
T Consensus 224 ~~~~i~~~v~v~~~~rrIPi~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~~~~ 292 (434)
T PRK12907 224 ILAIVVGVIYIQQAVRKIPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIAQLF 292 (434)
T ss_pred HHHHHHHHhheeeeeEEEEEEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHHHHh
Confidence 33666789999999999999976 3345 4457899999999999999999999998887764
No 12
>COG1281 Disulfide bond chaperones of the HSP33 family [Posttranslational modification, protein turnover, chaperones]
Probab=33.18 E-value=22 Score=30.76 Aligned_cols=17 Identities=35% Similarity=0.679 Sum_probs=13.7
Q ss_pred cccccchhHHHHhhcCCc
Q psy5829 2 WCSCLSRSKFLSSLQNSK 19 (147)
Q Consensus 2 ~~~~~~~~~~~~a~~~lP 19 (147)
-|.| ||||+..|+..|+
T Consensus 235 ~C~C-SrEr~~~aL~~lg 251 (286)
T COG1281 235 RCSC-SRERVAAALLSLG 251 (286)
T ss_pred EcCC-CHHHHHHHHHhcC
Confidence 3999 6999999986654
No 13
>PRK04989 psbM photosystem II reaction center protein M; Provisional
Probab=25.16 E-value=77 Score=19.34 Aligned_cols=20 Identities=35% Similarity=0.640 Sum_probs=13.2
Q ss_pred cHHHHHHHHH------HHHHHHhhhc
Q psy5829 20 MAVMMLATVL------VFAIVIYFQG 39 (147)
Q Consensus 20 nL~~liaTi~------vfl~ViYlq~ 39 (147)
|..+++||.+ +|++++|.|.
T Consensus 4 N~lgfiAt~Lfi~iPt~FLlilYvqT 29 (35)
T PRK04989 4 NDLGFVASLLFVLVPTVFLIILYIQT 29 (35)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHheec
Confidence 4556666654 4678888774
No 14
>CHL00080 psbM photosystem II protein M
Probab=22.26 E-value=94 Score=18.86 Aligned_cols=20 Identities=30% Similarity=0.594 Sum_probs=13.2
Q ss_pred cHHHHHHHHH------HHHHHHhhhc
Q psy5829 20 MAVMMLATVL------VFAIVIYFQG 39 (147)
Q Consensus 20 nL~~liaTi~------vfl~ViYlq~ 39 (147)
|..++++|.+ +|+++.|.|-
T Consensus 4 N~lgfiAt~LFi~iPt~FLlilyvkT 29 (34)
T CHL00080 4 NILAFIATALFILVPTAFLLIIYVKT 29 (34)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhheee
Confidence 5667777765 3667777763
No 15
>KOG1638|consensus
Probab=20.69 E-value=2.3e+02 Score=24.33 Aligned_cols=79 Identities=25% Similarity=0.354 Sum_probs=45.6
Q ss_pred ceeeeeeeecchhHHHHH-HHHHHHH-HHHHHHhhhh----cccee---eecccc-----------eec------cCCCC
Q psy5829 57 SYPIKLFYTSNIPIILQS-ALVSNLY-VISQMLAVKF----HGNIF---VNLLGE-----------WAD------VGGGG 110 (147)
Q Consensus 57 ~yPIkLlYtSn~PIIl~s-al~sni~-~isqll~~~~----~~~~~---~~lLG~-----------w~~------~~~~~ 110 (147)
.||...-+.+-+|++... |...+.+ -..|.+|..+ .+... -.++|. ..| ..+++
T Consensus 99 iypf~~~~~~~~p~~i~a~a~~F~~~NG~lqg~y~~~~~~~~d~~~~~~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~ 178 (257)
T KOG1638|consen 99 IYPFLIRSSNPSPAIIVALAIAFCTLNGTLQGLYLSHYQLYEDPWVTDIRFLIGVVLFVTGMLINIYSDNILRTLRKPGG 178 (257)
T ss_pred hheeeecCCCCccHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCchhHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCC
Confidence 578888887788887554 4444443 3556655422 11111 122332 111 11123
Q ss_pred CCCccccceeeeeeCCCCCHHHHHH
Q psy5829 111 PARAYPIGGLCYYLSPPENLGHFLL 135 (147)
Q Consensus 111 ~~~~~pvgGL~YYlspP~sl~~~l~ 135 (147)
.+.--|-||+-=|+|-|+=+.|+++
T Consensus 179 ~~YkIP~GglFeyVsCPNYfgEiie 203 (257)
T KOG1638|consen 179 KGYKIPRGGLFEYVSCPNYFGEIIE 203 (257)
T ss_pred CceecCCCceEEEeecchHHHHHHH
Confidence 3455599999999999998888765
No 16
>KOG2888|consensus
Probab=20.56 E-value=56 Score=29.53 Aligned_cols=21 Identities=33% Similarity=0.611 Sum_probs=17.8
Q ss_pred eeee--eeCCCCCHHHHHHHHHH
Q psy5829 119 GLCY--YLSPPENLGHFLLLLLL 139 (147)
Q Consensus 119 GL~Y--YlspP~sl~~~l~~~~~ 139 (147)
|.+| |..||..|.+|+.+||-
T Consensus 161 GFmYiRYtqpp~dLw~WyEpyld 183 (453)
T KOG2888|consen 161 GFMYIRYTQPPADLWDWYEPYLD 183 (453)
T ss_pred eeeEEeecCChhHHHHHhhhhcc
Confidence 4555 88999999999999973
No 17
>PRK01402 hslO Hsp33-like chaperonin; Reviewed
Probab=20.27 E-value=53 Score=28.67 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=14.9
Q ss_pred cccccchhHHHHhhcCCcc
Q psy5829 2 WCSCLSRSKFLSSLQNSKM 20 (147)
Q Consensus 2 ~~~~~~~~~~~~a~~~lPn 20 (147)
.|.| ||||+.+++..|+.
T Consensus 278 ~C~C-Srerv~~~L~~Lg~ 295 (328)
T PRK01402 278 RCSC-SREKIAGVLKGFSA 295 (328)
T ss_pred eCCC-CHHHHHHHHHhcCH
Confidence 5999 59999999987764
Done!