Query psy5829
Match_columns 147
No_of_seqs 105 out of 300
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 19:00:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5829.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5829hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_A Protein transport prote 99.9 9.5E-24 3.2E-28 187.1 2.9 115 16-130 237-351 (476)
2 2ww9_A SEC sixty-one protein h 99.8 3.5E-22 1.2E-26 177.6 3.3 111 16-130 242-356 (490)
3 3mp7_A Preprotein translocase 99.8 2.1E-20 7.3E-25 165.9 7.7 106 17-134 235-342 (482)
4 1rh5_A Preprotein translocase 99.7 3.5E-18 1.2E-22 150.1 8.3 97 20-129 209-305 (436)
5 3dl8_G Preprotein translocase 99.4 2.6E-13 8.8E-18 118.9 3.5 69 19-87 217-292 (429)
6 3din_C Preprotein translocase 99.3 1.7E-12 5.9E-17 113.8 3.2 69 19-87 215-290 (431)
7 3j01_A Preprotein translocase 99.2 2.8E-12 9.6E-17 112.6 2.8 67 21-87 214-287 (435)
8 2zjs_Y Preprotein translocase 99.1 7.6E-11 2.6E-15 103.5 5.8 65 23-87 220-291 (434)
9 1vzy_A 33 kDa chaperonin; chap 22.7 31 0.001 28.2 1.4 18 2-20 234-251 (291)
10 1vq0_A 33 kDa chaperonin; TM13 22.3 31 0.0011 28.5 1.4 18 2-20 242-259 (302)
11 3arc_M Photosystem II reaction 20.4 62 0.0021 19.0 2.0 20 20-39 4-29 (36)
No 1
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=99.87 E-value=9.5e-24 Score=187.10 Aligned_cols=115 Identities=75% Similarity=1.290 Sum_probs=102.5
Q ss_pred cCCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhccce
Q psy5829 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNI 95 (147)
Q Consensus 16 ~~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~~ 95 (147)
+++||+.++++|++++++|+|+|+.|+||||+++|+||+++.||||+.|+|+|||||+++++++.++++|+++++++++.
T Consensus 237 ~~l~~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~~~~~~~~~~~~ 316 (476)
T 2wwb_A 237 QNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSARFSGNL 316 (476)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHCCBCCCCCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCS
T ss_pred cccchHHHHHHHHHHHhheeEEEEEEEEEEEEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999888877777
Q ss_pred eeecccceeccCCCCCCCccccceeeeeeCCCCCH
Q psy5829 96 FVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENL 130 (147)
Q Consensus 96 ~~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl 130 (147)
.++++|.|.+.+.+++++++|+||++||++||+++
T Consensus 317 ~~~~lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~ 351 (476)
T 2wwb_A 317 LVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESF 351 (476)
T ss_dssp CHHHHCSSSTTCSCTTSSSCCSSSHHHHTSCCSSS
T ss_pred hhhhhhhhhhccccccccccccHHHHHHcCCcchh
Confidence 77899999654322345789999999999999764
No 2
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=99.84 E-value=3.5e-22 Score=177.64 Aligned_cols=111 Identities=23% Similarity=0.411 Sum_probs=99.0
Q ss_pred cCCccHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHH----HHhhhh
Q psy5829 16 QNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQ----MLAVKF 91 (147)
Q Consensus 16 ~~lPnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isq----ll~~~~ 91 (147)
+++|+++.+++|++++++|+|+|+.|+||||+++|.||+++.+|||+.|+|+|||||+++++++.++++| ++++++
T Consensus 242 ~~lp~l~~l~~~l~vi~~vV~~q~~~rrIPIqyak~~g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~~~~~~~~~ 321 (490)
T 2ww9_A 242 DYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVLIQLVAKNE 321 (490)
T ss_dssp SSCCSHHHHHHHHHHHHHHHHHTTCCEECCCBCSSSSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTTTHHHHHCC
T ss_pred ccccHHHHHHHHHHHHHHHheeeeeEEEEEEEEcccCCcCceeeeEeccccchHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 4678999999999999999999999999999999999999999999999999999999999999988888 777666
Q ss_pred ccceeeecccceeccCCCCCCCccccceeeeeeCCCCCH
Q psy5829 92 HGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENL 130 (147)
Q Consensus 92 ~~~~~~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl 130 (147)
+++..++++|.|.+.+ ++++|++|++||++||+|+
T Consensus 322 ~~~~~~~~lg~~~~~~----~~~~~~~~~~~~l~~p~~~ 356 (490)
T 2ww9_A 322 PTHIICKIMGHYENAN----NLLAVPTFPLSLLAPPTSF 356 (490)
T ss_dssp CCSSSCTTSBCCSCCS----SSSCSCSSBSCCSSCCCCS
T ss_pred CCccccccccchhccc----cccchhHHHHHHhCCccch
Confidence 6666778889996432 4678999999999998875
No 3
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=99.81 E-value=2.1e-20 Score=165.94 Aligned_cols=106 Identities=34% Similarity=0.603 Sum_probs=82.1
Q ss_pred CCc--cHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhccc
Q psy5829 17 NSK--MAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGN 94 (147)
Q Consensus 17 ~lP--nL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~ 94 (147)
++| |++.+++|++++++|+|+|+.|+||||+++|+| +++.+|||+.|+|+|||||+++++++.++++|+++++
T Consensus 235 ~lp~~~l~~l~~~l~v~~~vV~~q~~~rrIPvqyak~~-~~~~iPiKln~aGviPiIfassll~~p~~i~~~~~~~---- 309 (482)
T 3mp7_A 235 GGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGVT-VRGSYPIRFLYVSNIPIILTFALYANIQLWARVLDRL---- 309 (482)
T ss_dssp SSSSCCHHHHHHHHHHHHHHHHHHHCCEEC-------------CEECSSSSTTHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred ccchhHHHHHHHHHHHHHHhheeEeeEEEEEEEecccc-ccceeeEeecccCchHHHHHHHHHHHHHHHHHHhhhc----
Confidence 567 899999999999999999999999999999988 8999999999999999999999999999999988632
Q ss_pred eeeecccceeccCCCCCCCccccceeeeeeCCCCCHHHHH
Q psy5829 95 IFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHFL 134 (147)
Q Consensus 95 ~~~~lLG~w~~~~~~~~~~~~pvgGL~YYlspP~sl~~~l 134 (147)
..+++|+|++.+ ..|++|++||++||.++.+++
T Consensus 310 -~~~~l~~~~~~~------~~~~~g~~~~l~p~~s~~~~~ 342 (482)
T 3mp7_A 310 -GHPWLGRFDPTT------GSPISGFVLYVIPPRNIFSVI 342 (482)
T ss_dssp -SCCSSBCCCCTT------SCCCCBSGGGSCCCSSSTHHH
T ss_pred -cchhhhhhcccc------cccchhHHHHhCCcccHHHHh
Confidence 356889997532 248999999999998876554
No 4
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=99.73 E-value=3.5e-18 Score=150.10 Aligned_cols=97 Identities=36% Similarity=0.742 Sum_probs=86.4
Q ss_pred cHHHHHHHHHHHHHHHhhhcceEEeeeccccccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHHhhhhccceeeec
Q psy5829 20 MAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFHGNIFVNL 99 (147)
Q Consensus 20 nL~~liaTi~vfl~ViYlq~~RVeIPI~s~r~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll~~~~~~~~~~~l 99 (147)
++..++++++++++++|+|+.|+||||+++|+||+++.+|+|+.|+|+||+||+++++++...++|+++++ + .++
T Consensus 209 ~l~~l~~~l~v~~~vV~~~~~~rrIPvqyak~~g~~~~lPlKln~aGviPiIfassll~~p~~i~~~~~~~--~---~~~ 283 (436)
T 1rh5_A 209 YIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLALYRM--G---IPI 283 (436)
T ss_dssp GTHHHHHHHHHHHHHHHHTTCEEEEECCCSSSTTCCCEEEEESCTTCSHHHHHHHHHHHHHHHHHHHHHTT--S---CCT
T ss_pred HHHHHHHHHHHHHHHHhhcceEEEEEEEecccCCccceeeeecccccchHHHHHHHHHHHHHHHHHHhccc--C---cch
Confidence 47888999999999999999999999999999999999999999999999999999999999999977532 1 247
Q ss_pred ccceeccCCCCCCCccccceeeeeeCCCCC
Q psy5829 100 LGEWADVGGGGPARAYPIGGLCYYLSPPEN 129 (147)
Q Consensus 100 LG~w~~~~~~~~~~~~pvgGL~YYlspP~s 129 (147)
+|+|+ + .+|+||++||++||++
T Consensus 284 ~g~~~--~------~~~~~gl~yyl~pp~~ 305 (436)
T 1rh5_A 284 LGHYE--G------GRAVDGIAYYLSTPYG 305 (436)
T ss_dssp TCCBC--S------SSBSSSTTGGGCCCCS
T ss_pred hhhcc--c------ccccccchhhcCChhH
Confidence 88894 1 3799999999999985
No 5
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=99.35 E-value=2.6e-13 Score=118.95 Aligned_cols=69 Identities=20% Similarity=0.345 Sum_probs=63.4
Q ss_pred ccHHHHHHHHHHHHHHHhhhcceEEeeecccc-c------cccccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829 19 KMAVMMLATVLVFAIVIYFQGFRVDLPIKSAR-Y------RGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 87 (147)
Q Consensus 19 PnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r-~------RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll 87 (147)
+++..++++++++++|+|+|+.|+||||+++| + ||+++.+|+|+.|+|+|||||+++++++...++|++
T Consensus 217 ~~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~ 292 (429)
T 3dl8_G 217 TLLLIIALIIAIIVGIVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLLNFV 292 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCSCCCCCCCCCBCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHheeeEEEEEEEEchhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHc
Confidence 56889999999999999999999999999875 3 789999999999999999999999999998887744
No 6
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=99.25 E-value=1.7e-12 Score=113.84 Aligned_cols=69 Identities=28% Similarity=0.364 Sum_probs=64.0
Q ss_pred ccHHHHHHHHHHHHHHHhhhcceEEeeecccc-------ccccccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829 19 KMAVMMLATVLVFAIVIYFQGFRVDLPIKSAR-------YRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 87 (147)
Q Consensus 19 PnL~~liaTi~vfl~ViYlq~~RVeIPI~s~r-------~RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll 87 (147)
+++..++++++++++|+|+|+.|++|||+++| .||+++.+|+|+.|+|+|||||+++++++...++|++
T Consensus 215 ~~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~~~~ 290 (431)
T 3din_C 215 EWIFLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIASIT 290 (431)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCBCCCCCCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHhheeeEEEEEEEechhhccccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHHHHc
Confidence 67889999999999999999999999999877 6899999999999999999999999999998887654
No 7
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=99.22 E-value=2.8e-12 Score=112.63 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHhhhcceEEeeecccc-c------cccccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829 21 AVMMLATVLVFAIVIYFQGFRVDLPIKSAR-Y------RGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 87 (147)
Q Consensus 21 L~~liaTi~vfl~ViYlq~~RVeIPI~s~r-~------RG~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll 87 (147)
+..++++++++++++|+|+.|+||||+++| + ||+++.+|+|+.|+|+|||||+++++++...++|++
T Consensus 214 l~~~~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~~~~ 287 (435)
T 3j01_A 214 LLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIASWF 287 (435)
T ss_dssp HHHHHHHHHHHHHTTCCCCCSCCCCCCCCCCCSSCCCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhheeEEEEEEEehhhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHHHHc
Confidence 566788889999999999999999999865 3 689999999999999999999999999998887753
No 8
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=99.09 E-value=7.6e-11 Score=103.55 Aligned_cols=65 Identities=29% Similarity=0.368 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHhhhcceEEeeeccccc---c----ccccceeeeeeeecchhHHHHHHHHHHHHHHHHHH
Q psy5829 23 MMLATVLVFAIVIYFQGFRVDLPIKSARY---R----GQYSSYPIKLFYTSNIPIILQSALVSNLYVISQML 87 (147)
Q Consensus 23 ~liaTi~vfl~ViYlq~~RVeIPI~s~r~---R----G~~~~yPIkLlYtSn~PIIl~sal~sni~~isqll 87 (147)
-++++++++++++|+|+.+.+|||.+.|. | |+++.+|+|+.|+|+||+||+++++++...++|++
T Consensus 220 ~l~~~~~vi~~vV~~~~~~rrIPvqyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~~~ 291 (434)
T 2zjs_Y 220 FLAFIVLAFAGMAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAAPF 291 (434)
T ss_dssp HHHHHHHHHHHHHHHHHCEEEEEEEECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHheeeEEEEeehhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHHHh
Confidence 34889999999999999999999999874 3 88899999999999999999999999998887744
No 9
>1vzy_A 33 kDa chaperonin; chaperone, heat shock protein, crystal engineering, molecular chaperone, redox-active center, PSI; 1.97A {Bacillus subtilis} SCOP: d.193.1.1 g.81.1.1
Probab=22.66 E-value=31 Score=28.24 Aligned_cols=18 Identities=22% Similarity=0.634 Sum_probs=14.6
Q ss_pred cccccchhHHHHhhcCCcc
Q psy5829 2 WCSCLSRSKFLSSLQNSKM 20 (147)
Q Consensus 2 ~~~~~~~~~~~~a~~~lPn 20 (147)
-|.| |||++.+++..++.
T Consensus 234 ~C~C-Srer~~~~L~slg~ 251 (291)
T 1vzy_A 234 HCPC-SKERFETAILGLGK 251 (291)
T ss_dssp CCCC-CHHHHHHHHHTTCH
T ss_pred cCCC-CHHHHHHHHHhCCH
Confidence 3999 49999999977754
No 10
>1vq0_A 33 kDa chaperonin; TM1394, joint center for structural genomics, protein structure initiative, PSI, chaperone; HET: UNL; 2.20A {Thermotoga maritima} SCOP: d.193.1.1 g.81.1.1
Probab=22.33 E-value=31 Score=28.46 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.7
Q ss_pred cccccchhHHHHhhcCCcc
Q psy5829 2 WCSCLSRSKFLSSLQNSKM 20 (147)
Q Consensus 2 ~~~~~~~~~~~~a~~~lPn 20 (147)
-|.| |||++.+++..|+.
T Consensus 242 ~C~C-SreR~~~aL~sLg~ 259 (302)
T 1vq0_A 242 KCDC-NREKAKNALLVLDK 259 (302)
T ss_dssp CCCC-CHHHHHHHHHTSCH
T ss_pred cCCC-CHHHHHHHHHhCCH
Confidence 4899 59999999987754
No 11
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=20.45 E-value=62 Score=19.00 Aligned_cols=20 Identities=40% Similarity=0.652 Sum_probs=12.5
Q ss_pred cHHHHHHHHH------HHHHHHhhhc
Q psy5829 20 MAVMMLATVL------VFAIVIYFQG 39 (147)
Q Consensus 20 nL~~liaTi~------vfl~ViYlq~ 39 (147)
|..+++||.+ +|+++.|.|.
T Consensus 4 n~l~fiAt~Lfi~iPt~FLlilYvqT 29 (36)
T 3arc_M 4 NQLGLIATALFVLVPSVFLIILYVQT 29 (36)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 3345555554 5778888874
Done!