RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5829
         (147 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score = 65.0 bits (158), Expect = 9e-14
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 13/124 (10%)

Query: 9   SKFLSSLQNSKMAVMMLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNI 68
           +  +  + N +    ++ T++VF +V+Y +  RV++P+   R +G    YPIK  Y SNI
Sbjct: 197 NSLIQGVPNIEYIAPIIGTIIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNI 256

Query: 69  PIILQSALVSNLYVISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPE 128
           P+IL +AL +N+ +    L       + + +LG +             + G+ YYLS P 
Sbjct: 257 PVILAAALFANIQLWGLAL-----YRMGIPILGHYEG--------GRAVDGIAYYLSTPY 303

Query: 129 NLGH 132
            L  
Sbjct: 304 GLSS 307


>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
           {Streptococcus pneumoniae r6 [TaxId: 171101]}
          Length = 194

 Score = 30.6 bits (68), Expect = 0.042
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 86  MLAVKFHGNIFVNLLGEWADVGGGGPARAYPI 117
           M+AVK  G   +   GE+A +  G  A    I
Sbjct: 1   MIAVKTCGK--LYWAGEYAILEPGQLALIKDI 30


>g3bzy.1 d.367.1.1 (A:246-262,B:263-345) Type III secretion
          proteins EscU {Escherichia coli [TaxId: 562]}
          Length = 100

 Score = 26.3 bits (58), Expect = 0.74
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 26 ATVLV-----FAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNL 80
          +TV+V      AI +Y++     LP+     +   +   IKL    +IP+I    L  +L
Sbjct: 11 STVIVKNPTHIAICLYYKLGETPLPLVIETGKDAKALQIIKLAELYDIPVIEDIPLARSL 70

Query: 81 Y 81
           
Sbjct: 71 D 71


>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus
           norvegicus) [TaxId: 10116]}
          Length = 225

 Score = 26.8 bits (58), Expect = 1.1
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 83  ISQMLAVKFHGNIFVNLLGEWADVGGGGPARAYPI 117
           +S++L V   G   V L GE A V  G  A A  +
Sbjct: 2   LSEVLLVSAPGK--VILHGEHAVV-HGKVALAVAL 33


>d1geha2 d.58.9.1 (A:12-136) Ribulose 1,5-bisphosphate
           carboxylase-oxygenase {Archaeon Thermococcus
           kodakaraensis [TaxId: 311400]}
          Length = 125

 Score = 23.5 bits (51), Expect = 8.4
 Identities = 7/36 (19%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 55  YSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVK 90
             +YP   F  +N+P +L +++  N++ + ++  ++
Sbjct: 77  RIAYPFHAFEEANLPGLL-ASIAGNIFGMKRVKGLR 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.144    0.444 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 529,722
Number of extensions: 21501
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 8
Length of query: 147
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,350,386
Effective search space: 94527020
Effective search space used: 94527020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 49 (22.8 bits)