BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy583
(293 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q56R14|TRI33_XENLA E3 ubiquitin-protein ligase TRIM33 OS=Xenopus laevis GN=trim33 PE=1
SV=1
Length = 1091
Score = 51.6 bits (122), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%)
Query: 126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
K I+ LL+++ K+ + A + +R ++E KR+ QEI + L N IN +GK
Sbjct: 289 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 348
Query: 186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
L +L + +Q L +++ + LSR H + F N + +GS ALL SK L
Sbjct: 349 LLQQLESVTKERQIKLVQQQNDITGLSRQIKHVMTFTNWAIASGSSTALLYSKRLITFQL 408
Query: 246 KSAMKVIDD 254
+ +K D
Sbjct: 409 RHILKARCD 417
>sp|Q9UPN9|TRI33_HUMAN E3 ubiquitin-protein ligase TRIM33 OS=Homo sapiens GN=TRIM33 PE=1
SV=3
Length = 1127
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%)
Query: 126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
K I+ LL+++ K+ + A + +R ++E KR+ QEI + L N IN +GK
Sbjct: 320 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 379
Query: 186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
L +L + +Q L +++ + LSR H + F N + +GS ALL SK L
Sbjct: 380 LLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQL 439
Query: 246 KSAMKVIDD 254
+ +K D
Sbjct: 440 RHILKARCD 448
>sp|Q99PP7|TRI33_MOUSE E3 ubiquitin-protein ligase TRIM33 OS=Mus musculus GN=Trim33 PE=1
SV=2
Length = 1142
Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%)
Query: 126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
K I+ LL+++ K+ + A + +R ++E KR+ QEI + L N IN +GK
Sbjct: 336 KGAIENLLAKLLEKKNYVHFAATQVQNRIKEVNETNKRVEQEIKVAIFTLINEINKKGKS 395
Query: 186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLL 245
L +L + +Q L +++ + LSR H + F N + +GS ALL SK L
Sbjct: 396 LLQQLENVTKERQMKLLQQQNDITGLSRQVKHVMNFTNWAIASGSSTALLYSKRLITFQL 455
Query: 246 KSAMKVIDD 254
+ +K D
Sbjct: 456 RHILKARCD 464
>sp|Q6E2N3|TRI33_DANRE E3 ubiquitin-protein ligase TRIM33 OS=Danio rerio GN=trim33 PE=2
SV=1
Length = 1163
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 118 LDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTN 177
LD+ K +I ++++ KR L++ + + R ++E K++ EI V L N
Sbjct: 316 LDEACQNQKGIIATFMTKLQEKRGLVEYSASEVQKRLKEVAETHKKVEHEIKIAVFTLIN 375
Query: 178 AINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSS 237
IN +GK L +L + + L ++ + L++ H + F N + GS ALL S
Sbjct: 376 EINKKGKSLLQQLESVTKDRSMKLLSQQRDISVLAQQIIHVLNFTNWAITNGSSTALLYS 435
Query: 238 K---AYK-RVLLKSAMKVI 252
K Y+ R+++K+ + +
Sbjct: 436 KRLITYQLRLIMKARVDAV 454
>sp|Q64127|TIF1A_MOUSE Transcription intermediary factor 1-alpha OS=Mus musculus GN=Trim24
PE=1 SV=1
Length = 1051
Score = 38.1 bits (87), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 59/113 (52%)
Query: 126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
K +I L++++ K +K I +R I++ +K++ Q+I + L IN +GK
Sbjct: 267 KVIIDTLITKLMEKTKYIKYTGNQIQNRIIEINQNQKQVEQDIKVAIFTLMVEINKKGKA 326
Query: 186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK 238
L ++L + + L +++ + LS+ +H + F +++GS ALL SK
Sbjct: 327 LLHQLESLAKDHRMKLMQQQQEVAGLSKQLEHVMHFSKWAVSSGSSTALLYSK 379
>sp|O15164|TIF1A_HUMAN Transcription intermediary factor 1-alpha OS=Homo sapiens GN=TRIM24
PE=1 SV=3
Length = 1050
Score = 37.4 bits (85), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 59/113 (52%)
Query: 126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185
K +I L++++ K +K I +R +++ +K++ Q+I + L IN +GK
Sbjct: 267 KVIIDTLITKLMEKTKYIKFTGNQIQNRIIEVNQNQKQVEQDIKVAIFTLMVEINKKGKA 326
Query: 186 LAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK 238
L ++L + + L +++ + LS+ +H + F +++GS ALL SK
Sbjct: 327 LLHQLESLAKDHRMKLMQQQQEVAGLSKQLEHVMHFSKWAVSSGSSTALLYSK 379
>sp|Q13263|TIF1B_HUMAN Transcription intermediary factor 1-beta OS=Homo sapiens GN=TRIM28
PE=1 SV=5
Length = 835
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 62/127 (48%)
Query: 128 LIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLA 187
L+ L+ + K L+ + K + +S+ +KR+ ++ + + +N RG+ L
Sbjct: 255 LLASLVKRLGDKHATLQKSTKEVRSSIRQVSDVQKRVQVDVKMAILQIMKELNKRGRVLV 314
Query: 188 YKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKS 247
++ + +Q+ L + T+ ++ + +H + F + L + ++ ALL SK L
Sbjct: 315 NDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESDNNTALLLSKKLIYFQLHR 374
Query: 248 AMKVIDD 254
A+K+I D
Sbjct: 375 ALKMIVD 381
>sp|O08629|TIF1B_RAT Transcription intermediary factor 1-beta OS=Rattus norvegicus
GN=Trim28 PE=1 SV=2
Length = 835
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 61/127 (48%)
Query: 128 LIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLA 187
L+ L+ + K L+ K + +S+ +KR+ ++ + + +N RG+ L
Sbjct: 257 LLASLVKRLGDKHATLQKNTKEVRSSIRQVSDVQKRVQVDVKMAILQIMKELNKRGRVLV 316
Query: 188 YKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKS 247
++ + +Q+ L + T+ ++ + +H + F + L + ++ ALL SK L
Sbjct: 317 NDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESDNNTALLLSKKLIYFQLHR 376
Query: 248 AMKVIDD 254
A+K+I D
Sbjct: 377 ALKMIVD 383
>sp|Q62318|TIF1B_MOUSE Transcription intermediary factor 1-beta OS=Mus musculus GN=Trim28
PE=1 SV=3
Length = 834
Score = 35.8 bits (81), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 61/127 (48%)
Query: 128 LIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLA 187
L+ L+ + K L+ K + +S+ +KR+ ++ + + +N RG+ L
Sbjct: 256 LLASLVKRLGDKHATLQKNTKEVRSSIRQVSDVQKRVQVDVKMAILQIMKELNKRGRVLV 315
Query: 188 YKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKS 247
++ + +Q+ L + T+ ++ + +H + F + L + ++ ALL SK L
Sbjct: 316 NDAQKVTEGQQERLERQHWTMTKIQKHQEHILRFASWALESDNNTALLLSKKLIYFQLHR 375
Query: 248 AMKVIDD 254
A+K+I D
Sbjct: 376 ALKMIVD 382
>sp|C5DJH6|SP110_LACTC Spindle pole body component 110 OS=Lachancea thermotolerans (strain
ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=SPC110 PE=3 SV=1
Length = 838
Score = 32.0 bits (71), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 107/214 (50%), Gaps = 35/214 (16%)
Query: 60 LREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDS-----EKLYNVYAEKRNINS 114
L+E+I LES+L+ K+K+LE+N + + +L+ L DS +KL E N+N+
Sbjct: 255 LQERIDKLESELAAKDKELEINRNEIKNLQNDLQKANHDSSSLADQKLQTRSKEIENLNN 314
Query: 115 GLQ--------LDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQ 166
L+ + E+++ ++ L +E+S L + + + +DD ++ EK +R+ +
Sbjct: 315 RLKSAVREREAAEHLLKESQNALRSLRAELS---TLRQESDRKLDD-LSVAKEKSERVLK 370
Query: 167 EI-------TEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLS-RLTDHC 218
E +E ++ N++ +L+ +L ++ D + K L ++ L++++ R+ D
Sbjct: 371 ERLEERTSQSERLQQRANSLEQNAAELSSRL-QLRDQRIKALEDEARELQKMNQRIQD-- 427
Query: 219 IEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVI 252
LN G D L ++ K L+S ++ I
Sbjct: 428 -------LNDGKDSEKLQAQNQKLDGLRSEIERI 454
>sp|A8EYE9|SYY_RICCK Tyrosine--tRNA ligase OS=Rickettsia canadensis (strain McKiel)
GN=tyrS PE=3 SV=1
Length = 411
Score = 31.6 bits (70), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 165 TQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQ 198
T+E T+ L+ IN KQLAY+L ++C S+Q
Sbjct: 276 TKEFTKFENLVAEDINAAKKQLAYELTKLCHSEQ 309
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.123 0.319
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,610,573
Number of Sequences: 539616
Number of extensions: 3441394
Number of successful extensions: 22152
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 1156
Number of HSP's that attempted gapping in prelim test: 19895
Number of HSP's gapped (non-prelim): 2978
length of query: 293
length of database: 191,569,459
effective HSP length: 116
effective length of query: 177
effective length of database: 128,974,003
effective search space: 22828398531
effective search space used: 22828398531
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)