Query psy583
Match_columns 293
No_of_seqs 152 out of 702
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 19:00:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00502 BBC B-Box C-termina 99.6 7.6E-14 1.6E-18 112.7 17.2 124 125-248 1-124 (127)
2 KOG4367|consensus 99.4 1.3E-12 2.9E-17 124.2 13.4 187 84-271 225-417 (699)
3 PF12126 DUF3583: Protein of u 98.3 2.8E-05 6.1E-10 71.4 15.9 115 134-248 6-120 (324)
4 KOG1029|consensus 97.5 0.0002 4.3E-09 73.3 7.1 103 1-103 485-590 (1118)
5 PF00643 zf-B_box: B-box zinc 97.1 3.3E-05 7.1E-10 51.0 -2.9 37 81-118 2-42 (42)
6 cd00021 BBOX B-Box-type zinc f 97.0 6.4E-05 1.4E-09 48.4 -1.7 31 84-114 2-36 (39)
7 smart00336 BBOX B-Box-type zin 96.8 0.00016 3.4E-09 47.3 -1.6 31 83-113 4-38 (42)
8 KOG2177|consensus 96.0 0.065 1.4E-06 47.9 10.3 72 56-133 65-140 (386)
9 PHA02562 46 endonuclease subun 95.8 1.2 2.6E-05 44.9 19.4 14 82-95 268-281 (562)
10 PF07139 DUF1387: Protein of u 94.2 1.6 3.4E-05 41.0 13.8 68 142-209 161-228 (302)
11 PF15290 Syntaphilin: Golgi-lo 87.7 24 0.00052 32.9 14.7 111 105-216 44-169 (305)
12 PF10146 zf-C4H2: Zinc finger- 84.2 32 0.0007 31.2 17.0 61 133-198 3-63 (230)
13 PF10168 Nup88: Nuclear pore c 84.0 52 0.0011 34.8 16.2 35 189-223 632-666 (717)
14 PRK07352 F0F1 ATP synthase sub 83.7 27 0.00058 29.9 15.5 61 116-176 42-102 (174)
15 PF05384 DegS: Sensor protein 83.6 27 0.00059 29.9 15.5 104 115-227 18-129 (159)
16 PRK06231 F0F1 ATP synthase sub 82.2 35 0.00077 30.2 15.5 60 116-175 71-130 (205)
17 TIGR01837 PHA_granule_1 poly(h 81.5 26 0.00057 28.3 11.3 59 158-216 58-116 (118)
18 PRK09174 F0F1 ATP synthase sub 81.4 38 0.00083 30.0 15.7 53 116-168 76-128 (204)
19 PRK09173 F0F1 ATP synthase sub 80.8 32 0.0007 28.8 15.9 66 116-181 25-90 (159)
20 PRK13460 F0F1 ATP synthase sub 79.2 39 0.00085 28.8 15.5 58 116-173 39-96 (173)
21 CHL00118 atpG ATP synthase CF0 78.2 40 0.00086 28.3 15.5 59 115-173 44-102 (156)
22 PF10168 Nup88: Nuclear pore c 78.0 71 0.0015 33.9 14.7 84 136-220 584-670 (717)
23 PRK07353 F0F1 ATP synthase sub 77.7 37 0.0008 27.7 15.3 59 115-173 27-85 (140)
24 CHL00019 atpF ATP synthase CF0 77.1 48 0.001 28.6 16.1 60 116-175 47-106 (184)
25 PRK05759 F0F1 ATP synthase sub 76.7 42 0.00091 27.8 15.5 58 116-173 27-84 (156)
26 PRK11637 AmiB activator; Provi 76.3 81 0.0018 30.9 21.6 24 6-29 51-74 (428)
27 KOG1760|consensus 76.1 18 0.00038 29.7 7.5 113 43-174 9-124 (131)
28 PRK04863 mukB cell division pr 75.8 1.6E+02 0.0034 34.0 21.6 68 56-130 436-503 (1486)
29 PRK14472 F0F1 ATP synthase sub 75.5 51 0.0011 28.2 15.5 58 116-173 41-98 (175)
30 PF00430 ATP-synt_B: ATP synth 75.5 39 0.00085 26.9 11.0 52 116-167 22-73 (132)
31 PRK08476 F0F1 ATP synthase sub 75.4 46 0.00099 27.6 16.7 54 115-168 29-82 (141)
32 PRK01156 chromosome segregatio 75.1 1.3E+02 0.0027 32.5 21.6 37 57-93 411-447 (895)
33 PRK14471 F0F1 ATP synthase sub 74.6 51 0.0011 27.8 15.5 62 115-176 30-91 (164)
34 PRK00409 recombination and DNA 74.2 1.1E+02 0.0024 32.7 15.2 75 127-201 516-593 (782)
35 PF13851 GAS: Growth-arrest sp 73.8 63 0.0014 28.5 15.6 14 57-70 29-42 (201)
36 PF14643 DUF4455: Domain of un 72.1 1.1E+02 0.0024 30.5 19.4 43 143-185 321-363 (473)
37 PHA02562 46 endonuclease subun 71.5 1.2E+02 0.0025 30.5 19.5 10 94-103 285-294 (562)
38 PRK13428 F0F1 ATP synthase sub 70.6 1.2E+02 0.0025 30.2 15.5 56 116-171 24-79 (445)
39 PF09755 DUF2046: Uncharacteri 69.9 1E+02 0.0022 29.3 16.5 69 128-196 38-106 (310)
40 PRK02224 chromosome segregatio 69.9 1.6E+02 0.0035 31.5 22.0 26 5-30 373-398 (880)
41 PRK14474 F0F1 ATP synthase sub 69.7 90 0.0019 28.5 15.5 54 116-169 28-81 (250)
42 PF00038 Filament: Intermediat 69.3 96 0.0021 28.7 22.7 33 2-34 4-36 (312)
43 PRK13453 F0F1 ATP synthase sub 69.2 72 0.0016 27.2 15.5 58 116-173 41-98 (173)
44 PF10498 IFT57: Intra-flagella 67.6 1.2E+02 0.0027 29.3 17.9 90 141-231 237-329 (359)
45 PRK06569 F0F1 ATP synthase sub 67.6 78 0.0017 27.0 17.2 53 115-167 32-84 (155)
46 TIGR01069 mutS2 MutS2 family p 66.6 1.6E+02 0.0035 31.5 14.3 22 128-149 512-533 (771)
47 PRK02224 chromosome segregatio 65.8 1.9E+02 0.0042 30.9 22.4 26 4-29 215-240 (880)
48 PF05597 Phasin: Poly(hydroxya 65.8 77 0.0017 26.3 13.2 62 155-216 68-129 (132)
49 PRK03918 chromosome segregatio 64.7 2E+02 0.0043 30.7 22.9 19 127-145 462-480 (880)
50 PF10186 Atg14: UV radiation r 64.5 1.1E+02 0.0024 27.7 15.7 7 94-100 12-18 (302)
51 PRK13454 F0F1 ATP synthase sub 64.4 94 0.002 26.8 16.3 55 116-170 54-108 (181)
52 TIGR01069 mutS2 MutS2 family p 64.4 1.6E+02 0.0034 31.6 13.7 38 171-208 547-584 (771)
53 PRK08475 F0F1 ATP synthase sub 63.5 94 0.002 26.5 15.5 58 116-173 45-102 (167)
54 KOG4673|consensus 63.4 2.1E+02 0.0045 30.4 20.9 28 3-30 354-381 (961)
55 PRK13455 F0F1 ATP synthase sub 62.9 99 0.0022 26.6 16.0 52 117-168 51-102 (184)
56 PRK14473 F0F1 ATP synthase sub 62.8 92 0.002 26.2 15.5 58 116-173 31-88 (164)
57 PF09726 Macoilin: Transmembra 62.0 94 0.002 32.8 11.4 137 2-166 488-629 (697)
58 PRK14475 F0F1 ATP synthase sub 59.5 1.1E+02 0.0024 25.9 16.0 59 116-174 33-91 (167)
59 PRK11820 hypothetical protein; 59.5 1.5E+02 0.0034 27.7 15.5 114 118-231 124-238 (288)
60 PRK13461 F0F1 ATP synthase sub 58.6 1.1E+02 0.0023 25.6 15.5 59 116-174 28-86 (159)
61 TIGR03321 alt_F1F0_F0_B altern 58.3 1.4E+02 0.0031 26.9 15.5 51 116-166 28-78 (246)
62 KOG2391|consensus 55.4 2E+02 0.0044 27.7 11.7 16 214-229 314-329 (365)
63 PF08112 ATP-synt_E_2: ATP syn 54.7 71 0.0015 22.2 7.5 43 166-208 7-49 (56)
64 PF13094 CENP-Q: CENP-Q, a CEN 54.6 1.3E+02 0.0028 25.2 11.4 50 133-182 43-92 (160)
65 KOG0999|consensus 53.7 2.7E+02 0.0059 28.8 19.7 13 236-248 718-730 (772)
66 TIGR00255 conserved hypothetic 52.6 2E+02 0.0044 26.9 14.5 112 120-231 128-241 (291)
67 PF08580 KAR9: Yeast cortical 51.2 3.2E+02 0.007 28.9 19.4 101 82-189 125-250 (683)
68 KOG0250|consensus 50.2 4E+02 0.0087 29.6 18.1 36 126-161 396-431 (1074)
69 KOG1029|consensus 50.1 3.6E+02 0.0079 29.1 17.1 15 56-70 445-459 (1118)
70 PF00170 bZIP_1: bZIP transcri 50.1 88 0.0019 22.0 8.7 50 119-168 14-63 (64)
71 smart00502 BBC B-Box C-termina 50.0 1.2E+02 0.0025 23.4 16.4 27 165-191 52-78 (127)
72 TIGR01144 ATP_synt_b ATP synth 49.2 1.5E+02 0.0032 24.3 15.5 75 116-190 18-96 (147)
73 KOG1853|consensus 48.0 2.3E+02 0.005 26.3 18.5 24 267-290 206-229 (333)
74 KOG0933|consensus 47.8 4.3E+02 0.0094 29.3 18.8 28 76-103 701-728 (1174)
75 PRK06568 F0F1 ATP synthase sub 47.7 1.7E+02 0.0038 24.8 16.0 58 116-173 27-84 (154)
76 PF15066 CAGE1: Cancer-associa 47.6 3.1E+02 0.0067 27.6 16.1 58 7-78 322-382 (527)
77 KOG0837|consensus 47.2 1E+02 0.0022 28.6 7.7 47 120-166 216-262 (279)
78 COG1579 Zn-ribbon protein, pos 47.0 2.3E+02 0.005 25.9 15.7 45 126-170 40-84 (239)
79 PF10211 Ax_dynein_light: Axon 46.3 2E+02 0.0044 25.1 10.9 35 178-212 152-186 (189)
80 TIGR02338 gimC_beta prefoldin, 46.3 1.4E+02 0.0031 23.4 10.3 44 129-172 65-108 (110)
81 TIGR00606 rad50 rad50. This fa 46.1 5E+02 0.011 29.5 22.9 41 191-231 929-969 (1311)
82 PF07889 DUF1664: Protein of u 45.8 1.7E+02 0.0037 24.1 10.8 22 118-139 30-51 (126)
83 COG1382 GimC Prefoldin, chaper 45.5 1.4E+02 0.0029 24.4 7.5 47 128-174 67-113 (119)
84 PF00261 Tropomyosin: Tropomyo 45.2 2.3E+02 0.005 25.4 17.6 28 4-31 3-30 (237)
85 PF06705 SF-assemblin: SF-asse 45.1 2.3E+02 0.0051 25.5 17.5 187 8-229 4-194 (247)
86 PF07464 ApoLp-III: Apolipopho 44.3 2E+02 0.0043 24.5 10.1 82 61-145 6-88 (155)
87 PF11932 DUF3450: Protein of u 44.0 2.4E+02 0.0053 25.4 11.7 115 120-234 45-170 (251)
88 PF08702 Fib_alpha: Fibrinogen 43.1 2E+02 0.0043 24.1 17.8 111 118-228 23-136 (146)
89 KOG0964|consensus 43.0 5.1E+02 0.011 28.8 24.2 173 2-178 265-451 (1200)
90 PRK12495 hypothetical protein; 42.6 12 0.00026 33.7 1.0 45 54-104 7-53 (226)
91 TIGR02169 SMC_prok_A chromosom 42.5 4.9E+02 0.011 28.4 20.9 9 264-272 573-581 (1164)
92 TIGR03752 conj_TIGR03752 integ 42.2 3.8E+02 0.0082 27.1 12.3 60 127-186 59-121 (472)
93 TIGR02231 conserved hypothetic 42.1 3.7E+02 0.0081 27.0 12.5 89 127-216 74-172 (525)
94 TIGR03185 DNA_S_dndD DNA sulfu 41.7 4.2E+02 0.0092 27.5 18.3 9 45-53 292-300 (650)
95 COG0711 AtpF F0F1-type ATP syn 41.7 2.2E+02 0.0047 24.1 15.5 51 116-166 29-79 (161)
96 PRK11637 AmiB activator; Provi 41.6 3.5E+02 0.0075 26.5 18.8 29 5-33 43-71 (428)
97 COG1196 Smc Chromosome segrega 40.6 5.7E+02 0.012 28.7 21.8 20 264-283 567-586 (1163)
98 PF12128 DUF3584: Protein of u 40.6 5.8E+02 0.013 28.8 19.9 13 59-71 604-616 (1201)
99 PF12999 PRKCSH-like: Glucosid 40.4 2.5E+02 0.0054 24.5 9.5 8 93-100 76-83 (176)
100 PF05667 DUF812: Protein of un 39.8 4.5E+02 0.0098 27.3 19.5 133 2-158 328-464 (594)
101 TIGR03545 conserved hypothetic 39.8 4.4E+02 0.0095 27.1 12.5 88 118-205 169-268 (555)
102 KOG0979|consensus 39.4 5.7E+02 0.012 28.3 18.2 79 20-102 146-228 (1072)
103 TIGR02680 conserved hypothetic 39.1 6.5E+02 0.014 28.9 23.3 35 3-37 750-784 (1353)
104 TIGR02168 SMC_prok_B chromosom 38.8 5.5E+02 0.012 27.9 22.6 32 196-227 993-1024(1179)
105 TIGR02977 phageshock_pspA phag 38.5 2.8E+02 0.0061 24.5 15.0 15 160-174 60-74 (219)
106 PRK04778 septation ring format 37.1 4.7E+02 0.01 26.7 18.3 22 229-250 441-462 (569)
107 KOG4367|consensus 37.0 4.5E+02 0.0097 26.4 14.3 52 40-104 136-187 (699)
108 COG3879 Uncharacterized protei 36.7 3.4E+02 0.0074 25.0 11.6 42 234-277 87-128 (247)
109 KOG4001|consensus 36.1 3.2E+02 0.007 24.5 10.3 12 93-104 141-152 (259)
110 PF06705 SF-assemblin: SF-asse 35.9 3.3E+02 0.0071 24.5 16.9 16 200-215 118-133 (247)
111 PF05010 TACC: Transforming ac 35.4 3.2E+02 0.007 24.3 16.4 100 122-222 99-201 (207)
112 PF10267 Tmemb_cc2: Predicted 35.4 4.5E+02 0.0097 25.9 14.0 63 154-216 253-318 (395)
113 PLN02372 violaxanthin de-epoxi 35.4 4.6E+02 0.01 26.1 12.6 56 152-207 383-443 (455)
114 KOG0804|consensus 35.3 4.8E+02 0.01 26.2 14.6 14 264-277 467-480 (493)
115 KOG0804|consensus 34.3 5E+02 0.011 26.1 12.6 29 193-221 425-453 (493)
116 TIGR00606 rad50 rad50. This fa 34.1 7.5E+02 0.016 28.1 22.7 13 56-68 640-652 (1311)
117 PRK06975 bifunctional uroporph 34.0 5.7E+02 0.012 26.8 15.7 101 143-248 376-476 (656)
118 PF10146 zf-C4H2: Zinc finger- 33.7 3.6E+02 0.0079 24.4 14.6 25 122-146 13-37 (230)
119 PF14712 Snapin_Pallidin: Snap 33.5 2.1E+02 0.0044 21.5 12.7 28 194-221 62-89 (92)
120 cd00632 Prefoldin_beta Prefold 33.4 2.3E+02 0.0049 22.0 8.8 42 129-170 61-102 (105)
121 KOG0243|consensus 33.0 7.3E+02 0.016 27.7 17.7 70 29-98 422-491 (1041)
122 PF15290 Syntaphilin: Golgi-lo 32.9 4.2E+02 0.0092 24.9 11.9 85 41-154 56-140 (305)
123 KOG0250|consensus 32.6 7.5E+02 0.016 27.6 21.4 17 257-273 493-510 (1074)
124 PF15079 DUF4546: Domain of un 32.3 3.4E+02 0.0073 23.6 8.6 29 169-202 78-106 (205)
125 KOG0161|consensus 32.2 9.6E+02 0.021 28.8 21.1 39 171-209 1161-1202(1930)
126 PF12128 DUF3584: Protein of u 31.3 8.1E+02 0.017 27.6 19.9 13 83-95 327-339 (1201)
127 KOG4568|consensus 31.1 5.1E+02 0.011 27.4 10.8 21 83-103 451-471 (664)
128 PF05667 DUF812: Protein of un 30.8 6.3E+02 0.014 26.3 16.4 54 127-180 383-436 (594)
129 PF10079 DUF2317: Uncharacteri 30.7 6E+02 0.013 26.0 11.4 28 177-204 455-482 (542)
130 KOG4571|consensus 30.4 3.5E+02 0.0076 25.5 8.6 22 149-170 259-280 (294)
131 PRK09343 prefoldin subunit bet 30.4 2.7E+02 0.0059 22.4 7.1 46 128-173 68-113 (121)
132 PF14942 Muted: Organelle biog 30.0 3.3E+02 0.0072 22.8 13.4 17 189-205 122-138 (145)
133 KOG4185|consensus 30.0 4.4E+02 0.0094 24.1 10.8 35 165-199 184-218 (296)
134 KOG4848|consensus 29.9 4E+02 0.0086 23.7 9.9 38 162-199 170-207 (225)
135 KOG0971|consensus 29.9 8E+02 0.017 27.2 17.3 16 199-214 1029-1044(1243)
136 KOG4460|consensus 29.9 6.5E+02 0.014 26.1 15.5 26 6-31 592-617 (741)
137 KOG4727|consensus 29.6 2.2E+02 0.0049 24.8 6.6 25 88-112 70-97 (193)
138 KOG2607|consensus 28.8 6E+02 0.013 25.4 10.8 62 109-173 103-164 (505)
139 PF15030 DUF4527: Protein of u 28.4 3.9E+02 0.0084 24.6 8.2 75 86-161 12-88 (277)
140 PF14644 DUF4456: Domain of un 28.2 3.6E+02 0.0078 23.7 8.1 17 205-221 94-110 (208)
141 PF05055 DUF677: Protein of un 27.4 5.6E+02 0.012 24.6 14.3 74 150-223 255-329 (336)
142 PF12548 DUF3740: Sulfatase pr 27.1 90 0.002 26.3 3.8 62 84-152 73-134 (145)
143 PRK10361 DNA recombination pro 26.9 6.7E+02 0.015 25.3 17.1 57 171-227 137-196 (475)
144 COG1561 Uncharacterized stress 26.4 5.5E+02 0.012 24.2 15.4 83 149-231 158-240 (290)
145 PF03915 AIP3: Actin interacti 26.2 6.6E+02 0.014 25.0 11.7 26 119-144 164-189 (424)
146 KOG4571|consensus 26.0 5.7E+02 0.012 24.1 9.9 51 171-222 238-288 (294)
147 PF05739 SNARE: SNARE domain; 25.9 2.2E+02 0.0048 19.4 9.8 54 128-181 8-61 (63)
148 PF09730 BicD: Microtubule-ass 25.5 8.5E+02 0.018 26.0 17.0 125 119-248 585-715 (717)
149 KOG3809|consensus 25.5 3.9E+02 0.0085 26.8 8.3 45 43-104 470-514 (583)
150 PF10211 Ax_dynein_light: Axon 25.5 4.5E+02 0.0098 22.8 15.0 7 58-64 36-42 (189)
151 PF10267 Tmemb_cc2: Predicted 25.1 6.7E+02 0.014 24.7 15.9 24 2-25 62-85 (395)
152 PF08317 Spc7: Spc7 kinetochor 25.1 5.8E+02 0.013 24.0 17.9 23 56-78 76-98 (325)
153 PF04012 PspA_IM30: PspA/IM30 24.8 4.7E+02 0.01 22.8 14.9 51 129-179 28-78 (221)
154 PF07111 HCR: Alpha helical co 24.7 8.7E+02 0.019 25.9 20.3 23 4-26 333-355 (739)
155 PF14968 CCDC84: Coiled coil p 24.5 1.2E+02 0.0025 29.3 4.5 36 107-149 10-45 (336)
156 PF07464 ApoLp-III: Apolipopho 24.4 4.4E+02 0.0095 22.4 7.6 23 117-139 31-53 (155)
157 COG1322 Predicted nuclease of 24.2 7.3E+02 0.016 24.8 15.5 33 175-207 133-165 (448)
158 smart00806 AIP3 Actin interact 24.2 7.2E+02 0.016 24.8 12.0 29 118-146 167-195 (426)
159 smart00338 BRLZ basic region l 24.1 2.6E+02 0.0056 19.6 8.0 45 120-164 15-59 (65)
160 PF09755 DUF2046: Uncharacteri 24.0 6.3E+02 0.014 24.0 19.8 25 39-70 11-35 (310)
161 PF13863 DUF4200: Domain of un 23.9 3.6E+02 0.0079 21.2 16.4 89 136-226 16-104 (126)
162 PF04508 Pox_A_type_inc: Viral 23.8 81 0.0018 18.2 2.0 17 2-18 1-17 (23)
163 PF04111 APG6: Autophagy prote 23.6 6.3E+02 0.014 23.8 14.9 9 95-103 2-10 (314)
164 PF05600 DUF773: Protein of un 23.6 7.9E+02 0.017 25.0 13.8 86 116-201 109-197 (507)
165 PF10079 DUF2317: Uncharacteri 23.5 7.8E+02 0.017 25.2 10.5 18 164-181 431-448 (542)
166 COG1322 Predicted nuclease of 23.4 7.6E+02 0.016 24.7 17.5 36 172-207 115-150 (448)
167 PF12998 ING: Inhibitor of gro 23.1 3.3E+02 0.0072 20.5 10.0 25 182-206 58-82 (105)
168 PF06632 XRCC4: DNA double-str 23.1 6.8E+02 0.015 24.1 13.8 43 166-208 161-203 (342)
169 KOG0774|consensus 23.0 6.3E+02 0.014 23.6 11.3 88 124-211 104-191 (334)
170 PRK00409 recombination and DNA 22.9 9.6E+02 0.021 25.7 16.9 39 171-209 552-590 (782)
171 PF12761 End3: Actin cytoskele 22.6 4.6E+02 0.01 23.2 7.5 21 166-186 131-151 (195)
172 KOG0963|consensus 22.2 9.2E+02 0.02 25.2 15.7 47 177-223 163-209 (629)
173 PF10158 LOH1CR12: Tumour supp 22.1 4.5E+02 0.0097 21.6 14.8 59 167-227 60-118 (131)
174 KOG1656|consensus 22.0 5.8E+02 0.013 22.9 13.2 12 198-209 84-95 (221)
175 cd07596 BAR_SNX The Bin/Amphip 22.0 4.9E+02 0.011 22.0 13.2 15 88-102 91-105 (218)
176 PF08898 DUF1843: Domain of un 21.9 86 0.0019 21.9 2.2 15 17-31 39-53 (53)
177 PF06008 Laminin_I: Laminin Do 21.6 6.1E+02 0.013 22.9 18.2 49 56-104 18-66 (264)
178 PF10498 IFT57: Intra-flagella 21.5 7.5E+02 0.016 23.9 13.7 7 56-62 105-111 (359)
179 KOG3850|consensus 21.4 8E+02 0.017 24.2 13.2 20 3-22 99-118 (455)
180 KOG4674|consensus 21.4 1.4E+03 0.031 27.2 21.1 70 87-162 196-269 (1822)
181 PF02050 FliJ: Flagellar FliJ 21.0 3.7E+02 0.0079 20.2 11.0 68 121-188 49-116 (123)
182 PF05377 FlaC_arch: Flagella a 20.8 3.1E+02 0.0067 19.3 7.0 34 135-168 4-37 (55)
183 TIGR02168 SMC_prok_B chromosom 20.6 1.1E+03 0.024 25.6 23.2 25 4-28 679-703 (1179)
184 PRK10869 recombination and rep 20.5 9.2E+02 0.02 24.6 18.8 27 4-30 173-199 (553)
185 PRK13454 F0F1 ATP synthase sub 20.1 5.6E+02 0.012 22.0 15.5 77 122-198 53-129 (181)
186 PF10186 Atg14: UV radiation r 20.1 6.4E+02 0.014 22.6 16.7 21 52-72 24-44 (302)
187 PF06160 EzrA: Septation ring 20.1 9.4E+02 0.02 24.6 17.6 28 204-231 162-189 (560)
188 PF04156 IncA: IncA protein; 20.0 5.4E+02 0.012 21.8 15.5 7 138-144 95-101 (191)
No 1
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=99.60 E-value=7.6e-14 Score=112.70 Aligned_cols=124 Identities=27% Similarity=0.324 Sum_probs=120.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 125 TKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEK 204 (293)
Q Consensus 125 ~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q 204 (293)
+|..|...+..++.+...+..++..+......+..+++.++.+|...|+.|+.+|++++..|+.+|+.++..+...|..+
T Consensus 1 ~k~~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q 80 (127)
T smart00502 1 QREALEELLTKLRKKAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQ 80 (127)
T ss_pred ChHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCcchhccchhHHHHHHHHH
Q psy583 205 KVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSA 248 (293)
Q Consensus 205 ~~~le~~L~~L~~~i~fveq~Lk~gs~~e~L~~kk~l~eRl~~L 248 (293)
...++..+..+..+++|+++.+..|++++||+..+.+..|+..+
T Consensus 81 ~~~l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i~~rl~~l 124 (127)
T smart00502 81 LESLTQKQEKLSHAINFTEEALNSGDPTELLLSKKLIIERLQNL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999876
No 2
>KOG4367|consensus
Probab=99.44 E-value=1.3e-12 Score=124.23 Aligned_cols=187 Identities=13% Similarity=0.056 Sum_probs=167.1
Q ss_pred chhhh-hHHHHHhhhhccchhh-h---hccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 84 NLDDL-KKTLANMMSDSEKLYN-V---YAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLIS 158 (293)
Q Consensus 84 ~~~~~-~~~l~~~ce~c~~l~c-~---~~eHk~H~~~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~ 158 (293)
+|.|| +.-+..||-.|-.++| . =..|-+|. +..+.-++.-||.+|...|..+.++.++.++++..++.+.+.++
T Consensus 225 ~ct~h~~e~~smyc~~ck~pvc~~clee~khs~he-vkal~~~~k~hksqls~al~~lsdrak~a~e~l~~lr~m~~~iq 303 (699)
T KOG4367|consen 225 TCTDHELENHSMYCVQCKMPVCYQCLEEGKHSSHE-VKALGAMWKLHKSQLSQALNGLSDRAKEAKEFLVQLRNMVQQIQ 303 (699)
T ss_pred hccCCCCCCceEEEEecCChHHHHHHHhhcccchh-hhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89998 4567889999999999 3 45577776 77899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhccch
Q psy583 159 EKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSK 238 (293)
Q Consensus 159 e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk~gs~~e~L~~k 238 (293)
++..+.+.-+-..++.||.+|..|+..|+..++++.+.|++.+..|+......|+.....++|.-++++..+|..||+..
T Consensus 304 ~n~~ef~a~l~~q~d~lid~l~~rk~qll~~v~~e~e~k~kv~r~qi~~ct~kl~qtt~lme~cle~ike~dps~~lqis 383 (699)
T KOG4367|consen 304 ENSVEFEACLVAQCDALIDALNRRKAQLLARVNKEHEHKLKVVRDQISHCTVKLRQTTGLMEYCLEVIKENDPSGFLQIS 383 (699)
T ss_pred hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhheeeeeeehhhHHHHHHHHhccCCCcceeehh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHH-hhhcCCCCCCCCCCcceeeecCC
Q psy583 239 AYKRVLLKSA-MKVIDDRPTIPEDTSYKITLKSP 271 (293)
Q Consensus 239 k~l~eRl~~L-~~~~~~~p~~p~~~~~~l~l~~~ 271 (293)
..++.|...+ ..|.+....+.-+..|++.|++-
T Consensus 384 ~ali~r~~~~e~~w~k~~~tp~~~tdf~l~ld~~ 417 (699)
T KOG4367|consen 384 DALIRRVHLTEDQWGKGTLTPRMTTDFDLSLDNS 417 (699)
T ss_pred hHHHHHhhhhHHhhcccccCCccccceeEecCch
Confidence 9999997766 56666544434445577777763
No 3
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=98.33 E-value=2.8e-05 Score=71.38 Aligned_cols=115 Identities=10% Similarity=0.086 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 134 SEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSR 213 (293)
Q Consensus 134 ~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~ 213 (293)
..+++....+..+-..+......+......+++.|++.+..++..++.++++||+.++..|+.--+.|..++..++.-|.
T Consensus 6 q~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~LeavLq 85 (324)
T PF12126_consen 6 QALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLEAVLQ 85 (324)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34555566677777777778888888888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCcchhccchhHHHHHHHHH
Q psy583 214 LTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSA 248 (293)
Q Consensus 214 ~L~~~i~fveq~Lk~gs~~e~L~~kk~l~eRl~~L 248 (293)
.+..+..+++....++++.+||....-+.+.|..|
T Consensus 86 Rir~G~~LVekM~~YASDQEVLdMh~FlreAL~rL 120 (324)
T PF12126_consen 86 RIRTGGALVEKMKLYASDQEVLDMHGFLREALERL 120 (324)
T ss_pred HHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999888888888888
No 4
>KOG1029|consensus
Probab=97.53 E-value=0.0002 Score=73.28 Aligned_cols=103 Identities=24% Similarity=0.461 Sum_probs=85.9
Q ss_pred CchhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCC--chh-hhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhhcc
Q psy583 1 MAEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAH--ADE-QEQTNLLISKKQLALKTLREKIQDLESQLSTKEKD 77 (293)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (293)
|+||.+|+..++|+++.|+.|.+||+.|.++-|.--.++ -.+ ...+.-||-.|++..+.|||.+..+.+..++|-.+
T Consensus 485 isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~~~ke~irq~ikdqldelskE~esk~~e 564 (1118)
T KOG1029|consen 485 ISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAARRKKELIRQAIKDQLDELSKETESKLNE 564 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999433322 222 56778899999999999999999999999999999
Q ss_pred ccCCccchhhhhHHHHHhhhhccchh
Q psy583 78 LEVNNSNLDDLKKTLANMMSDSEKLY 103 (293)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~ce~c~~l~ 103 (293)
++.++.++.+++..+--.--.|+.++
T Consensus 565 idi~n~qlkelk~~~~~q~lake~~y 590 (1118)
T KOG1029|consen 565 IDIFNNQLKELKEDVNSQQLAKEELY 590 (1118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98878888888777666655565554
No 5
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=97.07 E-value=3.3e-05 Score=50.95 Aligned_cols=37 Identities=5% Similarity=0.084 Sum_probs=29.1
Q ss_pred CccchhhhhHH-HHHhhhhccchhh---hhccccccccccch
Q psy583 81 NNSNLDDLKKT-LANMMSDSEKLYN---VYAEKRNINSGLQL 118 (293)
Q Consensus 81 ~~~~~~~~~~~-l~~~ce~c~~l~c---~~~eHk~H~~~~~I 118 (293)
++..|..|+.+ +.+||.+|..++| ....|++|. +.||
T Consensus 2 ~~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~H~-~~~i 42 (42)
T PF00643_consen 2 QEPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKGHK-IVPI 42 (42)
T ss_dssp SSSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTTSE-EEEC
T ss_pred cCccCccCCccceEEEecCCCCccCccCCCCCCCCCE-EeEC
Confidence 45589999999 9999999999999 355599987 4454
No 6
>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
Probab=97.04 E-value=6.4e-05 Score=48.42 Aligned_cols=31 Identities=13% Similarity=0.090 Sum_probs=25.8
Q ss_pred chhhhhH-HHHHhhhhccchhhh---hcccccccc
Q psy583 84 NLDDLKK-TLANMMSDSEKLYNV---YAEKRNINS 114 (293)
Q Consensus 84 ~~~~~~~-~l~~~ce~c~~l~c~---~~eHk~H~~ 114 (293)
.|+.|+. |+.+||++|..++|. ...|++|.+
T Consensus 2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~~H~~ 36 (39)
T cd00021 2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHSGHRR 36 (39)
T ss_pred CCCccCCcceEEEeCccChhhhhhcChhhcCCCCE
Confidence 4889988 999999999999993 344888873
No 7
>smart00336 BBOX B-Box-type zinc finger.
Probab=96.77 E-value=0.00016 Score=47.30 Aligned_cols=31 Identities=16% Similarity=0.098 Sum_probs=26.3
Q ss_pred cchhhhh-HHHHHhhhhccchhhh---hccccccc
Q psy583 83 SNLDDLK-KTLANMMSDSEKLYNV---YAEKRNIN 113 (293)
Q Consensus 83 ~~~~~~~-~~l~~~ce~c~~l~c~---~~eHk~H~ 113 (293)
..|..|+ .++.+||++|+.++|. ...|++|.
T Consensus 4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H~~H~ 38 (42)
T smart00336 4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEHRGHT 38 (42)
T ss_pred CcCCCCCCCceEEECCCCCcccccccChhhcCCCc
Confidence 4799998 9999999999999993 33788886
No 8
>KOG2177|consensus
Probab=96.01 E-value=0.065 Score=47.93 Aligned_cols=72 Identities=22% Similarity=0.260 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhhccchhh-hh---ccccccccccchHHHHHHHHHHHHH
Q psy583 56 ALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYN-VY---AEKRNINSGLQLDKWATETKHLIKG 131 (293)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~l~c-~~---~eHk~H~~~~~I~eAa~~~K~~L~~ 131 (293)
+|.++-+.+...... .........|..|+..+.+||++|..+.| .| .+|.+|. +.++++++..++..+..
T Consensus 65 ~l~~~~~~~~~~~~~-----~~~~~~~~~c~~~~~~~~~~c~~~~~~~c~~c~~~~~h~~h~-~~~~~~~~~~~~~~~~~ 138 (386)
T KOG2177|consen 65 LLANLVERLRQLRLS-----RPLGSKEELCEKHGEELKLFCEEDEKLLCVLCRESGEHRGHP-VLPLEEAAQEYREKLLA 138 (386)
T ss_pred HHHHHHHHHHhcCCc-----ccccccchhhhhcCCcceEEecccccccCCCCCCcccccCCc-cccHHHHHHHHHHHHHH
Confidence 677777766555211 11111122899999999999999999888 34 4888887 67999999999833333
Q ss_pred HH
Q psy583 132 LL 133 (293)
Q Consensus 132 ~L 133 (293)
.+
T Consensus 139 ~~ 140 (386)
T KOG2177|consen 139 EL 140 (386)
T ss_pred HH
Confidence 33
No 9
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.78 E-value=1.2 Score=44.86 Aligned_cols=14 Identities=14% Similarity=0.404 Sum_probs=8.9
Q ss_pred ccchhhhhHHHHHh
Q psy583 82 NSNLDDLKKTLANM 95 (293)
Q Consensus 82 ~~~~~~~~~~l~~~ 95 (293)
...+..+.+.+.+|
T Consensus 268 ~~~l~~~~~~~~~~ 281 (562)
T PHA02562 268 KSKIEQFQKVIKMY 281 (562)
T ss_pred HHHHHHHHHHHHHh
Confidence 33566666777776
No 10
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=94.25 E-value=1.6 Score=41.05 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 142 LLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLE 209 (293)
Q Consensus 142 ~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le 209 (293)
.+++....|..=.--|++.++.....|...|..|+..|-+|+-.|+.+++++..+...-|....+..+
T Consensus 161 DLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaLl~EmdkVK~EAmeiL~aRqkkAe 228 (302)
T PF07139_consen 161 DLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVALLAEMDKVKAEAMEILDARQKKAE 228 (302)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444334433344567788888889999999999999999999999999999999998888877766
No 11
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.68 E-value=24 Score=32.93 Aligned_cols=111 Identities=15% Similarity=0.119 Sum_probs=71.0
Q ss_pred hhccccccc------cccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-----H
Q psy583 105 VYAEKRNIN------SGLQLDK---WATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLI-SEKKKRLTQEI-----T 169 (293)
Q Consensus 105 ~~~eHk~H~------~~~~I~e---Aa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L-~e~~e~v~~eI-----~ 169 (293)
.|.+.|+-. |..|+.. ++...|.+|++....++.+-.++.+....+.++.+.| .+.+..|+.++ +
T Consensus 44 ~C~dNHGikPP~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEECHRVEAQLALKEAR 123 (305)
T PF15290_consen 44 SCGDNHGIKPPNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEECHRVEAQLALKEAR 123 (305)
T ss_pred ecccCCCCCCCCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555433 5566654 7788899999999999999889999988887777665 45566665543 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 170 EMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTD 216 (293)
Q Consensus 170 ~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~ 216 (293)
..+..|.++++.-+..|.+.=.-+..... .++-|-..++.-|..++
T Consensus 124 kEIkQLkQvieTmrssL~ekDkGiQKYFv-DINiQN~KLEsLLqsME 169 (305)
T PF15290_consen 124 KEIKQLKQVIETMRSSLAEKDKGIQKYFV-DINIQNKKLESLLQSME 169 (305)
T ss_pred HHHHHHHHHHHHHHhhhchhhhhHHHHHh-hhhhhHhHHHHHHHHHH
Confidence 56666777777777777665333333322 23444444444444333
No 12
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=84.18 E-value=32 Score=31.17 Aligned_cols=61 Identities=11% Similarity=0.083 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 133 LSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQ 198 (293)
Q Consensus 133 L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl 198 (293)
|..++.+...+++....+......++... ..-..+..-+..|..++...+++|..|..+..
T Consensus 3 i~~ir~K~~~lek~k~~i~~e~~~~e~ee-----~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn 63 (230)
T PF10146_consen 3 IKEIRNKTLELEKLKNEILQEVESLENEE-----KCLEEYRKEMEELLQERMAHVEELRQINQDIN 63 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555444444322 22234555566666666666666665555443
No 13
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=83.99 E-value=52 Score=34.84 Aligned_cols=35 Identities=3% Similarity=0.097 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 189 KLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVN 223 (293)
Q Consensus 189 eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fve 223 (293)
..++.....+..+..+++.+...+..+....++.+
T Consensus 632 ~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~ 666 (717)
T PF10168_consen 632 EAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQ 666 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555555555555433
No 14
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=83.70 E-value=27 Score=29.86 Aligned_cols=61 Identities=13% Similarity=0.108 Sum_probs=48.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLT 176 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li 176 (293)
-||..+..+.+..+...+.................+......+..+...........+...
T Consensus 42 kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~ 102 (174)
T PRK07352 42 GFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIR 102 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999998888888888888777777777666666555555443
No 15
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=83.59 E-value=27 Score=29.86 Aligned_cols=104 Identities=17% Similarity=0.236 Sum_probs=62.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH
Q psy583 115 GLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLT--------QEITEMVKLLTNAINLRGKQL 186 (293)
Q Consensus 115 ~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~--------~eI~~~fe~Li~~Leere~~L 186 (293)
++.|.+.+..-...++.-|..++..+..+-.-...+.......+.+...+. .+|..+|+..+. +
T Consensus 18 If~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~--------l 89 (159)
T PF05384_consen 18 IFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE--------L 89 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH--------H
Confidence 345677666666677777777777666666666666655555555544433 344444443222 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy583 187 AYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLN 227 (293)
Q Consensus 187 L~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk 227 (293)
--+|- ..+.+...|...++.++..+..+...+..++..+.
T Consensus 90 Q~~L~-~~re~E~qLr~rRD~LErrl~~l~~tierAE~l~s 129 (159)
T PF05384_consen 90 QVRLA-MLREREKQLRERRDELERRLRNLEETIERAENLVS 129 (159)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 23445566777788888888888888887777764
No 16
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=82.20 E-value=35 Score=30.18 Aligned_cols=60 Identities=10% Similarity=0.130 Sum_probs=47.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLL 175 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~L 175 (293)
-||..+..+.+..+...+..+.....+....+...+......+..+...........+..
T Consensus 71 kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~ 130 (205)
T PRK06231 71 KPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQL 130 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999888888888887777777777666666555555543
No 17
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=81.52 E-value=26 Score=28.26 Aligned_cols=59 Identities=15% Similarity=0.080 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 158 SEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTD 216 (293)
Q Consensus 158 ~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~ 216 (293)
+...+.+.......+..+-..++++-..+|..+.-.....+..|...++.|+..+..|.
T Consensus 58 ~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 58 KTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444556667777888888888888888888888888888888888887765
No 18
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=81.42 E-value=38 Score=30.02 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=41.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEI 168 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI 168 (293)
-||..+..+.+..+...|........+....+...+..+..-+.++.......
T Consensus 76 ~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~A 128 (204)
T PRK09174 76 PRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAA 128 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999988888888887777776666666655554433
No 19
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=80.83 E-value=32 Score=28.82 Aligned_cols=66 Identities=11% Similarity=0.049 Sum_probs=51.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Lee 181 (293)
-||..+..+.+..+...+.................+......+..+.............++.....
T Consensus 25 ~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~~~~~a~~ 90 (159)
T PRK09173 25 GMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEALTAEAKR 90 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999998888888888888888887777777666666665544443333
No 20
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=79.25 E-value=39 Score=28.84 Aligned_cols=58 Identities=14% Similarity=0.062 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVK 173 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe 173 (293)
-||..+..+.+..+...+........+........+......+..+...........+
T Consensus 39 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~ 96 (173)
T PRK13460 39 DVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIVAEAKSDAL 96 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999988888887777777766666666555554444444
No 21
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=78.22 E-value=40 Score=28.32 Aligned_cols=59 Identities=15% Similarity=0.015 Sum_probs=45.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 115 GLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVK 173 (293)
Q Consensus 115 ~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe 173 (293)
+.||..+..+.+..+...+........+........+......+.++...........+
T Consensus 44 ~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~ 102 (156)
T CHL00118 44 YKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAK 102 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999988888888888777777776666555554444443
No 22
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=78.05 E-value=71 Score=33.87 Aligned_cols=84 Identities=15% Similarity=0.289 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 136 VSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTN---AINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLS 212 (293)
Q Consensus 136 lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~---~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L 212 (293)
++++++.+......+.++.+.+.++.+....++......+.. .|-..|+++.++|+...+. +..|...++++...+
T Consensus 584 l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AEr~~~~EL~~~~~~-l~~l~~si~~lk~k~ 662 (717)
T PF10168_consen 584 LQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAEREFKKELERMKDQ-LQDLKASIEQLKKKL 662 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 344444444444455555555555555555554444444433 2445677777777766663 667777777777776
Q ss_pred HHHHHHHH
Q psy583 213 RLTDHCIE 220 (293)
Q Consensus 213 ~~L~~~i~ 220 (293)
.....-+.
T Consensus 663 ~~Q~~~i~ 670 (717)
T PF10168_consen 663 DYQQRQIE 670 (717)
T ss_pred HHHHHHHh
Confidence 66554444
No 23
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=77.75 E-value=37 Score=27.68 Aligned_cols=59 Identities=8% Similarity=0.011 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 115 GLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVK 173 (293)
Q Consensus 115 ~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe 173 (293)
+.||.....+.+..+.+.+.............+...+......+..+............
T Consensus 27 ~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~ 85 (140)
T PRK07353 27 YKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEAD 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999988888888888777777777666555555444444
No 24
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=77.05 E-value=48 Score=28.62 Aligned_cols=60 Identities=8% Similarity=-0.023 Sum_probs=47.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLL 175 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~L 175 (293)
-||..+..+.+..+...+.............+...+......+..+...........+..
T Consensus 47 kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~ 106 (184)
T CHL00019 47 GVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIERE 106 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999998888888888877777777776666665555555443
No 25
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=76.69 E-value=42 Score=27.82 Aligned_cols=58 Identities=10% Similarity=0.028 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVK 173 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe 173 (293)
-||..+..+.+..+...+..........+......+......+..+.....+......
T Consensus 27 ~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~ea~ 84 (156)
T PRK05759 27 PPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKKRAA 84 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999988888888877777777766666555555444444
No 26
>PRK11637 AmiB activator; Provisional
Probab=76.26 E-value=81 Score=30.89 Aligned_cols=24 Identities=8% Similarity=0.274 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhh
Q psy583 6 ALKAKLKEQNQRLITLNHEKAKLE 29 (293)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (293)
+++.++++..+.+-.+..+...++
T Consensus 51 ~l~~qi~~~~~~i~~~~~~~~~~~ 74 (428)
T PRK11637 51 SIQQDIAAKEKSVRQQQQQRASLL 74 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444333
No 27
>KOG1760|consensus
Probab=76.07 E-value=18 Score=29.71 Aligned_cols=113 Identities=12% Similarity=0.139 Sum_probs=59.7
Q ss_pred hhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhhccccCCcc---chhhhhHHHHHhhhhccchhhhhccccccccccchH
Q psy583 43 QEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNS---NLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLD 119 (293)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~ce~c~~l~c~~~eHk~H~~~~~I~ 119 (293)
.+.+||.|-.-| -||-.---++-. ..-..||.+-++ .+.|-+-.+.++=++|+.+-|.+++-=-|+ +
T Consensus 9 ~e~v~Vt~EDQq-~iN~Fsrl~~R~----~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~---~-- 78 (131)
T KOG1760|consen 9 PEDVKVTFEDQQ-NINEFSRLNSRK----DDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHV---K-- 78 (131)
T ss_pred cccCcccHHHHH-HHHHHHHHHhhH----HHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheec---c--
Confidence 357788884333 444333222211 111133333333 567778888999999988766444332222 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 120 KWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKL 174 (293)
Q Consensus 120 eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~ 174 (293)
...+... +.+..+.+.+.+..++.....|..+.+.++....+-|..
T Consensus 79 ------~~~~~~~---LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFgd 124 (131)
T KOG1760|consen 79 ------LDKLQDQ---LEEKKETLEKEIEELESELESISARMDELKKVLYAKFGD 124 (131)
T ss_pred ------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1122222 333444555666666666666666666666666666653
No 28
>PRK04863 mukB cell division protein MukB; Provisional
Probab=75.81 E-value=1.6e+02 Score=34.03 Aligned_cols=68 Identities=4% Similarity=0.092 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhhccchhhhhccccccccccchHHHHHHHHHHHH
Q psy583 56 ALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLIK 130 (293)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~l~c~~~eHk~H~~~~~I~eAa~~~K~~L~ 130 (293)
+.-+|.+++.....++..++..+..-...+++.+..++.|=.....++...+ -++..+|+...++.|+
T Consensus 436 SdEeLe~~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~G-------kv~~~~a~~~~~~~~~ 503 (1486)
T PRK04863 436 TADNAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAG-------EVSRSEAWDVARELLR 503 (1486)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CcCHHHHHHHHHHHHH
Confidence 5566666666666665555555544444566666666544444444432111 1355666666665554
No 29
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=75.54 E-value=51 Score=28.17 Aligned_cols=58 Identities=7% Similarity=0.009 Sum_probs=44.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVK 173 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe 173 (293)
-||.....+.+..+...+.............+...+......+..+...........+
T Consensus 41 kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~ 98 (175)
T PRK14472 41 GPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIREGKEYAE 98 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999988888887777777777666666555555444444
No 30
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=75.47 E-value=39 Score=26.88 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQE 167 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~e 167 (293)
-||.....+.+..+...+........................+..+.....+
T Consensus 22 ~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~ 73 (132)
T PF00430_consen 22 KPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEE 73 (132)
T ss_dssp HHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777788888888887777777766666666665555555444433
No 31
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=75.36 E-value=46 Score=27.57 Aligned_cols=54 Identities=17% Similarity=0.099 Sum_probs=40.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 115 GLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEI 168 (293)
Q Consensus 115 ~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI 168 (293)
+-||..+..+.+..+.+.+.................+......+..+......+
T Consensus 29 ~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~a 82 (141)
T PRK08476 29 YKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQKA 82 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999998888877777777776666666665555544443
No 32
>PRK01156 chromosome segregation protein; Provisional
Probab=75.06 E-value=1.3e+02 Score=32.48 Aligned_cols=37 Identities=27% Similarity=0.520 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHH
Q psy583 57 LKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLA 93 (293)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 93 (293)
++++++++..+...+..-..-+..-+....++++.+.
T Consensus 411 ~~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~ 447 (895)
T PRK01156 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSRNME 447 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666655544333333222234445666544
No 33
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=74.56 E-value=51 Score=27.75 Aligned_cols=62 Identities=11% Similarity=0.043 Sum_probs=48.8
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 115 GLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLT 176 (293)
Q Consensus 115 ~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li 176 (293)
+-||..+..+.+..+...+.................+......+..+...........+...
T Consensus 30 ~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~~~~ 91 (164)
T PRK14471 30 WKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAILKEAREIKEKMI 91 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999999999999998888888888888777777776666655555544433
No 34
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=74.21 E-value=1.1e+02 Score=32.71 Aligned_cols=75 Identities=12% Similarity=0.079 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 127 HLIKGLLSEVSYKRVLLKSAMKVIDDRQNLI---SEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTL 201 (293)
Q Consensus 127 ~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L---~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L 201 (293)
..+..++..+......++.....+.....++ +.+.+.....+......++...+++..+++.+++...+.-++.|
T Consensus 516 ~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 516 EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555566666555554444444433333222 22222222233333334444444444444444444333333333
No 35
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=73.85 E-value=63 Score=28.52 Aligned_cols=14 Identities=29% Similarity=0.741 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHh
Q psy583 57 LKTLREKIQDLESQ 70 (293)
Q Consensus 57 ~~~~~~~~~~~~~~ 70 (293)
|+.||+.+..|+..
T Consensus 29 IksLKeei~emkk~ 42 (201)
T PF13851_consen 29 IKSLKEEIAEMKKK 42 (201)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566777777654
No 36
>PF14643 DUF4455: Domain of unknown function (DUF4455)
Probab=72.07 E-value=1.1e+02 Score=30.55 Aligned_cols=43 Identities=5% Similarity=0.185 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 143 LKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQ 185 (293)
Q Consensus 143 le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~ 185 (293)
+...+..+......+....+..-..+...|..+....+..+..
T Consensus 321 ~e~~le~l~~~~E~~a~~~~~~~~~L~~f~~~~~~lwd~h~~~ 363 (473)
T PF14643_consen 321 FEEELEKLDKSFEELAKQTEAQSEDLFKFFQEAAQLWDEHRKK 363 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444555555566666666555555533
No 37
>PHA02562 46 endonuclease subunit; Provisional
Probab=71.53 E-value=1.2e+02 Score=30.53 Aligned_cols=10 Identities=0% Similarity=0.026 Sum_probs=6.0
Q ss_pred Hhhhhccchh
Q psy583 94 NMMSDSEKLY 103 (293)
Q Consensus 94 ~~ce~c~~l~ 103 (293)
..|.+|...+
T Consensus 285 ~~Cp~C~~~~ 294 (562)
T PHA02562 285 GVCPTCTQQI 294 (562)
T ss_pred CCCCCCCCcC
Confidence 3666666655
No 38
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=70.59 E-value=1.2e+02 Score=30.21 Aligned_cols=56 Identities=13% Similarity=0.087 Sum_probs=40.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEM 171 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~ 171 (293)
-||..+..+.+..+...|.........+.......+......+..+.....+-...
T Consensus 24 ~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~ 79 (445)
T PRK13428 24 PPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEARED 79 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999998888777777777776666665555554444443333
No 39
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=69.91 E-value=1e+02 Score=29.26 Aligned_cols=69 Identities=13% Similarity=0.105 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 128 LIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDS 196 (293)
Q Consensus 128 ~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~ 196 (293)
.|+.-+...+.+...+..-+..+....-.+..+++..+..|...+-+-++.|.+++..|...++.+.+.
T Consensus 38 ~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ 106 (310)
T PF09755_consen 38 VLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEF 106 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555666566666666666666666666666666666666666666666555554443
No 40
>PRK02224 chromosome segregation protein; Provisional
Probab=69.88 E-value=1.6e+02 Score=31.50 Aligned_cols=26 Identities=12% Similarity=0.300 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy583 5 SALKAKLKEQNQRLITLNHEKAKLEA 30 (293)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (293)
..+..+++.....|-.|..+...+++
T Consensus 373 ~~~~~~l~~~~~~l~~l~~el~el~~ 398 (880)
T PRK02224 373 EEAREAVEDRREEIEELEEEIEELRE 398 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555555444433
No 41
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=69.70 E-value=90 Score=28.51 Aligned_cols=54 Identities=4% Similarity=0.062 Sum_probs=39.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEIT 169 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~ 169 (293)
-||..+..+.+..+...+........+.+......+.....++.+.........
T Consensus 28 kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~ 81 (250)
T PRK14474 28 KPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQ 81 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999988888777777777666666666555544444333
No 42
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=69.32 E-value=96 Score=28.69 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=25.8
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhc
Q psy583 2 AEMSALKAKLKEQNQRLITLNHEKAKLEARTKA 34 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 34 (293)
.+|..|-++|-.---|.-+|-++-.+|++.-..
T Consensus 4 ~eL~~LNdRla~YIekVr~LE~~N~~Le~~i~~ 36 (312)
T PF00038_consen 4 EELQSLNDRLASYIEKVRFLEQENKRLESEIEE 36 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 367788888887777888888888888877663
No 43
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=69.18 E-value=72 Score=27.24 Aligned_cols=58 Identities=5% Similarity=0.046 Sum_probs=44.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVK 173 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe 173 (293)
-||..+..+.+..+...+.................+......+..+............
T Consensus 41 ~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~ 98 (173)
T PRK13453 41 GPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQAR 98 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999988888887777777777766666555555544443
No 44
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=67.59 E-value=1.2e+02 Score=29.29 Aligned_cols=90 Identities=12% Similarity=0.108 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q psy583 141 VLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEK---KVTLEQLSRLTDH 217 (293)
Q Consensus 141 ~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q---~~~le~~L~~L~~ 217 (293)
...+..+..+.......-++...-+..|...|+.+++-.+....+ |.++...+......+... +..+...+..+..
T Consensus 237 ~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~-ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~ 315 (359)
T PF10498_consen 237 PETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDE-LSEVQEKYKQASEGVSERTRELAEISEELEQVKQ 315 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333434444444444445666666777666665444333 344444444433333333 3333333333333
Q ss_pred HHHHHHhhhccCCc
Q psy583 218 CIEFVNNGLNTGSD 231 (293)
Q Consensus 218 ~i~fveq~Lk~gs~ 231 (293)
-++.-...+..|+|
T Consensus 316 emeerg~~mtD~sP 329 (359)
T PF10498_consen 316 EMEERGSSMTDGSP 329 (359)
T ss_pred HHHHhcCCCCCCCH
Confidence 33333334444433
No 45
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=67.58 E-value=78 Score=26.99 Aligned_cols=53 Identities=9% Similarity=0.126 Sum_probs=41.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 115 GLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQE 167 (293)
Q Consensus 115 ~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~e 167 (293)
+-||.......+..+..-+........+........+......+.++.....+
T Consensus 32 ~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 32 TPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34889999999999999999998888888887777777766666666555443
No 46
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=66.56 E-value=1.6e+02 Score=31.46 Aligned_cols=22 Identities=18% Similarity=0.071 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy583 128 LIKGLLSEVSYKRVLLKSAMKV 149 (293)
Q Consensus 128 ~L~~~L~~lk~k~~~le~~l~~ 149 (293)
.+..++..+......++.....
T Consensus 512 ~~~~li~~L~~~~~~~e~~~~~ 533 (771)
T TIGR01069 512 EINVLIEKLSALEKELEQKNEH 533 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554444444444333
No 47
>PRK02224 chromosome segregation protein; Provisional
Probab=65.76 E-value=1.9e+02 Score=30.89 Aligned_cols=26 Identities=4% Similarity=0.207 Sum_probs=12.3
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy583 4 MSALKAKLKEQNQRLITLNHEKAKLE 29 (293)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (293)
++.+.+++.+.++++-.+..+.+.++
T Consensus 215 l~el~~~i~~~~~~~~~l~~~l~~l~ 240 (880)
T PRK02224 215 LAELDEEIERYEEQREQARETRDEAD 240 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555544444443
No 48
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=65.76 E-value=77 Score=26.25 Aligned_cols=62 Identities=11% Similarity=0.081 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 155 NLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTD 216 (293)
Q Consensus 155 ~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~ 216 (293)
+.+......+...+.....++-+.++.+-...|..|.--...-+..|...+++|...+..|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~ 129 (132)
T PF05597_consen 68 DQVKSRVDDVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLA 129 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666666666666667777777777777666666666667777776666665554
No 49
>PRK03918 chromosome segregation protein; Provisional
Probab=64.70 E-value=2e+02 Score=30.68 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy583 127 HLIKGLLSEVSYKRVLLKS 145 (293)
Q Consensus 127 ~~L~~~L~~lk~k~~~le~ 145 (293)
..+..-+..++.++..+..
T Consensus 462 ~~l~~~~~~l~~~~~~l~~ 480 (880)
T PRK03918 462 KRIEKELKEIEEKERKLRK 480 (880)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 50
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=64.48 E-value=1.1e+02 Score=27.69 Aligned_cols=7 Identities=0% Similarity=-0.126 Sum_probs=3.2
Q ss_pred Hhhhhcc
Q psy583 94 NMMSDSE 100 (293)
Q Consensus 94 ~~ce~c~ 100 (293)
|||..|-
T Consensus 12 ~~C~~C~ 18 (302)
T PF10186_consen 12 FYCANCV 18 (302)
T ss_pred eECHHHH
Confidence 4444443
No 51
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=64.40 E-value=94 Score=26.82 Aligned_cols=55 Identities=13% Similarity=0.056 Sum_probs=41.8
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITE 170 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~ 170 (293)
.||..+..+.+..+...+.................+......+..+.........
T Consensus 54 ~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ 108 (181)
T PRK13454 54 PRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRA 108 (181)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999888888888887777777766666665554444433
No 52
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=64.36 E-value=1.6e+02 Score=31.56 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 171 MVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTL 208 (293)
Q Consensus 171 ~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~l 208 (293)
.++.....|++++++++.++..+....+.....+.+.+
T Consensus 547 ~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~ 584 (771)
T TIGR01069 547 ELEQEMEELKERERNKKLELEKEAQEALKALKKEVESI 584 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555444444443333
No 53
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=63.49 E-value=94 Score=26.47 Aligned_cols=58 Identities=14% Similarity=0.034 Sum_probs=42.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVK 173 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe 173 (293)
-||..+..+.+..+.+.+..........+......+......+.++.....+.....+
T Consensus 45 kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe 102 (167)
T PRK08475 45 KPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAY 102 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999888888888777777666666666655555544444443
No 54
>KOG4673|consensus
Probab=63.42 E-value=2.1e+02 Score=30.39 Aligned_cols=28 Identities=29% Similarity=0.387 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy583 3 EMSALKAKLKEQNQRLITLNHEKAKLEA 30 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (293)
++.-|.++|.-..+||++++-+||-|+-
T Consensus 354 ~i~~Ln~~leaReaqll~~e~~ka~lee 381 (961)
T KOG4673|consen 354 EIKMLNNALEAREAQLLADEIAKAMLEE 381 (961)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888999999999999876
No 55
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=62.91 E-value=99 Score=26.57 Aligned_cols=52 Identities=13% Similarity=0.159 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 117 QLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEI 168 (293)
Q Consensus 117 ~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI 168 (293)
||.....+.+..+...+........+........+......+..+......-
T Consensus 51 ~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A 102 (184)
T PRK13455 51 MIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAA 102 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999888888887777777777766665555543
No 56
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=62.83 E-value=92 Score=26.16 Aligned_cols=58 Identities=12% Similarity=0.109 Sum_probs=44.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVK 173 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe 173 (293)
-||..+..+.+..+...+.................+......+..+............
T Consensus 31 kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~ 88 (164)
T PRK14473 31 RPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERAR 88 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999888888888777777777766666555554444333
No 57
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=61.98 E-value=94 Score=32.85 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=76.3
Q ss_pred chhHHHHHHHHH-hhhhhh---hhhhhh-hhhhhhhhcCCCCCchhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhhc
Q psy583 2 AEMSALKAKLKE-QNQRLI---TLNHEK-AKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEK 76 (293)
Q Consensus 2 ~~~~~~~~~~~~-~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (293)
+-|++|.-||+| +-+|.. +|+.|+ ||.++.-+|. .+++.|..+.+-.=-.++....+|+.+++.--.
T Consensus 488 q~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aa--------r~~~~~~~~r~e~~e~~r~r~~~lE~E~~~lr~ 559 (697)
T PF09726_consen 488 QSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAA--------RALAQAQATRQECAESCRQRRRQLESELKKLRR 559 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhh--------hccccchhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 346777777775 344443 233333 4544433221 222233334444445688888888888777777
Q ss_pred cccCCccchhhhhHHHHHhhhhccchhhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 77 DLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNL 156 (293)
Q Consensus 77 ~~~~~~~~~~~~~~~l~~~ce~c~~l~c~~~eHk~H~~~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~ 156 (293)
++..-.+.|..+...+.-|..-| .+ +| .-.+.|-..|..++++-..++..+..-....-.
T Consensus 560 elk~kee~~~~~e~~~~~lr~~~-------~e--~~-----------~~~e~L~~aL~amqdk~~~LE~sLsaEtriKld 619 (697)
T PF09726_consen 560 ELKQKEEQIRELESELQELRKYE-------KE--SE-----------KDTEVLMSALSAMQDKNQHLENSLSAETRIKLD 619 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------hh--hh-----------hhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 77666667777766653332211 00 11 113466677777888888888877775444444
Q ss_pred HHHHHHHHHH
Q psy583 157 ISEKKKRLTQ 166 (293)
Q Consensus 157 L~e~~e~v~~ 166 (293)
|-.-...++.
T Consensus 620 LfsaLg~akr 629 (697)
T PF09726_consen 620 LFSALGDAKR 629 (697)
T ss_pred HHHHHHHHHH
Confidence 4444444444
No 58
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=59.54 E-value=1.1e+02 Score=25.93 Aligned_cols=59 Identities=8% Similarity=-0.003 Sum_probs=47.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKL 174 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~ 174 (293)
-||.....+.+..+...|........+....+...+......+..+.....+-......
T Consensus 33 ~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~ 91 (167)
T PRK14475 33 KALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARR 91 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999988888888888887777777766666555554443
No 59
>PRK11820 hypothetical protein; Provisional
Probab=59.54 E-value=1.5e+02 Score=27.69 Aligned_cols=114 Identities=12% Similarity=0.059 Sum_probs=70.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 118 LDKWATETKHLIKGLLSEVSYKRV-LLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDS 196 (293)
Q Consensus 118 I~eAa~~~K~~L~~~L~~lk~k~~-~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~ 196 (293)
.++.+......+...|..+..-+. +=......+..+...|....+.++...-...+.+..-|.++-.+++..++..+=.
T Consensus 124 ~~~~~~~l~~al~~AL~~l~~~R~~EG~~L~~dl~~rl~~i~~~~~~i~~~~p~~~~~~~~rL~~rl~el~~~~d~~Rl~ 203 (288)
T PRK11820 124 LEALWAALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEALAPEILEEYRERLRERLEELLGELDENRLE 203 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 344445555666666666655332 3333334566667777777777776666677777777777777776555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q psy583 197 KQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSD 231 (293)
Q Consensus 197 kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk~gs~ 231 (293)
..-.+-..+-.+...+..|.+=+......|..+.|
T Consensus 204 qEval~adK~DI~EEi~RL~sHl~~f~~~L~~~~~ 238 (288)
T PRK11820 204 QEVALLAQKADIAEELDRLKSHLKEFREILKKGGP 238 (288)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55556666666777777777666666666655433
No 60
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=58.58 E-value=1.1e+02 Score=25.59 Aligned_cols=59 Identities=7% Similarity=0.023 Sum_probs=44.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKL 174 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~ 174 (293)
-||.....+.+..+...+.................+......+..+.....+.......
T Consensus 28 kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~ 86 (159)
T PRK13461 28 DKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAEN 86 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999988888777777777776666666655555554444443
No 61
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=58.26 E-value=1.4e+02 Score=26.91 Aligned_cols=51 Identities=10% Similarity=0.157 Sum_probs=36.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQ 166 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~ 166 (293)
-||.....+.+..+...+........+........+......+..+.....
T Consensus 28 kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~ 78 (246)
T TIGR03321 28 RPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLT 78 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999999999888888777777666666665555554444443
No 62
>KOG2391|consensus
Probab=55.42 E-value=2e+02 Score=27.73 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhhhccC
Q psy583 214 LTDHCIEFVNNGLNTG 229 (293)
Q Consensus 214 ~L~~~i~fveq~Lk~g 229 (293)
.+++++-.+++.+..|
T Consensus 314 aieD~i~~L~~~~r~G 329 (365)
T KOG2391|consen 314 AIEDAIYSLGKSLRDG 329 (365)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 4456666777777655
No 63
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=54.66 E-value=71 Score=22.25 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 166 QEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTL 208 (293)
Q Consensus 166 ~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~l 208 (293)
+.|...+..|..-|++...++++.+..++..-++.-..+++.+
T Consensus 7 ~~~d~yI~~Lk~kLd~Kk~Eil~~ln~EY~kiLk~r~~~lEev 49 (56)
T PF08112_consen 7 STIDKYISILKSKLDEKKSEILSNLNMEYEKILKQRRKELEEV 49 (56)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777788888888888888888877665544444443
No 64
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=54.56 E-value=1.3e+02 Score=25.23 Aligned_cols=50 Identities=16% Similarity=0.065 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 133 LSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLR 182 (293)
Q Consensus 133 L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leer 182 (293)
+..++..+...+..+....+.+..++.++.....++.......+.+|...
T Consensus 43 l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~ 92 (160)
T PF13094_consen 43 LELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKAHPVLQLD 92 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 33566666666666666666677777777777777777777766666544
No 65
>KOG0999|consensus
Probab=53.70 E-value=2.7e+02 Score=28.75 Aligned_cols=13 Identities=15% Similarity=-0.038 Sum_probs=8.8
Q ss_pred cchhHHHHHHHHH
Q psy583 236 SSKAYKRVLLKSA 248 (293)
Q Consensus 236 ~~kk~l~eRl~~L 248 (293)
+.+-.+..|+..+
T Consensus 718 qqklaltqrle~~ 730 (772)
T KOG0999|consen 718 QQKLALTQRLEEL 730 (772)
T ss_pred HHHHHHHHHHHHH
Confidence 4455677788777
No 66
>TIGR00255 conserved hypothetical protein TIGR00255. The apparent ortholog from Aquifex aeolicus as reported is split into two consecutive reading frames.
Probab=52.56 E-value=2e+02 Score=26.94 Aligned_cols=112 Identities=14% Similarity=0.106 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy583 120 KWATETKHLIKGLLSEVSYKRV-LLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLA-YKLNEICDSK 197 (293)
Q Consensus 120 eAa~~~K~~L~~~L~~lk~k~~-~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL-~eLe~~~~~k 197 (293)
+.+.-....+...|..+..-+. +=......+..+...+......++...-...+.+..-|.++-.+++ ..++..+=..
T Consensus 128 ~~~~~l~~al~~AL~~l~~mR~~EG~~L~~dl~~rl~~i~~~v~~i~~~~p~~~~~~~~rL~~rl~el~~~~id~~Rl~q 207 (291)
T TIGR00255 128 AIYALILGALEEALLDFINMREFEGENLKSDIVQRLDLIEREVKKVRSAMPDILQWQRERLKARIEDLAQEFLDLNRLEQ 207 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3334444556666666555322 3333334466666677777666666666666666677777777776 3445444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q psy583 198 QKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSD 231 (293)
Q Consensus 198 l~~L~~q~~~le~~L~~L~~~i~fveq~Lk~gs~ 231 (293)
.-.+-..+-.+...+..|.+=+......|..+.|
T Consensus 208 Eval~adK~DI~EEl~RL~sHl~~f~~~L~~~~~ 241 (291)
T TIGR00255 208 EAALLAQRIDIAEEIDRLDSHVKEFYNILKKGEA 241 (291)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 5556666666677777777666666666655444
No 67
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=51.22 E-value=3.2e+02 Score=28.86 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=59.9
Q ss_pred ccchhhhhHHHHHhhhhccchhhhhcccc-----cc-ccccchHHHHHHHH-------------------HHHHHHHHHH
Q psy583 82 NSNLDDLKKTLANMMSDSEKLYNVYAEKR-----NI-NSGLQLDKWATETK-------------------HLIKGLLSEV 136 (293)
Q Consensus 82 ~~~~~~~~~~l~~~ce~c~~l~c~~~eHk-----~H-~~~~~I~eAa~~~K-------------------~~L~~~L~~l 136 (293)
+|-++||=..|..-.++|-.+|..+.+.+ .| .....++..+++.+ +.+-..+-.+
T Consensus 125 ~EL~~~vlg~l~~EIe~~~~~vfemeE~R~~Sp~~~~lp~~~Le~Ive~~~~~~~~~~~~~~lPtF~~~Desl~~~ll~L 204 (683)
T PF08580_consen 125 EELWNDVLGDLDNEIEECIRLVFEMEEKRHSSPVRHGLPIFELETIVEEMPSSTNSSNKRFSLPTFSPQDESLYSSLLAL 204 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccCCCcccHHHHHHhccccCCCCcCCcCCCCCCcHHHHHHHHHHHH
Confidence 45677777777888888888877544333 22 12234455555542 3344455556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 137 SYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYK 189 (293)
Q Consensus 137 k~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~e 189 (293)
..++.-++..+.-+..++..+..++. ..|..+...|+.+.+.|..+
T Consensus 205 ~arm~PLraSLdfLP~Ri~~F~~ra~-------~~fp~a~e~L~~r~~~L~~k 250 (683)
T PF08580_consen 205 FARMQPLRASLDFLPMRIEEFQSRAE-------SIFPSACEELEDRYERLEKK 250 (683)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHH-------HhhHHHHHHHHHHHHHHHHH
Confidence 77777777777667777777766652 34555555555555555443
No 68
>KOG0250|consensus
Probab=50.16 E-value=4e+02 Score=29.63 Aligned_cols=36 Identities=14% Similarity=0.147 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKK 161 (293)
Q Consensus 126 K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~ 161 (293)
+.++..-+..+....+.++..+..+......+.+..
T Consensus 396 ~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~ 431 (1074)
T KOG0250|consen 396 LEERENKLEQLKKEVEKLEEQINSLREELNEVKEKA 431 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555555555555555555555555554443
No 69
>KOG1029|consensus
Probab=50.13 E-value=3.6e+02 Score=29.12 Aligned_cols=15 Identities=40% Similarity=0.530 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHh
Q psy583 56 ALKTLREKIQDLESQ 70 (293)
Q Consensus 56 ~~~~~~~~~~~~~~~ 70 (293)
-|..|++++..|-..
T Consensus 445 eletLn~k~qqls~k 459 (1118)
T KOG1029|consen 445 ELETLNFKLQQLSGK 459 (1118)
T ss_pred HHHHHHHHHHHHhhh
Confidence 566666666555433
No 70
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.06 E-value=88 Score=22.00 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 119 DKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEI 168 (293)
Q Consensus 119 ~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI 168 (293)
..|+..++..-...+..+......+..-...+......+......+..++
T Consensus 14 R~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~ 63 (64)
T PF00170_consen 14 REAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34777777777777777777777777766666666666666555555443
No 71
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=49.98 E-value=1.2e+02 Score=23.41 Aligned_cols=27 Identities=11% Similarity=0.095 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 165 TQEITEMVKLLTNAINLRGKQLAYKLN 191 (293)
Q Consensus 165 ~~eI~~~fe~Li~~Leere~~LL~eLe 191 (293)
...|...=..|+.-|+..+......|.
T Consensus 52 ~~~L~~~e~~ll~~l~~~~~~~~~~l~ 78 (127)
T smart00502 52 RNALNKRKKQLLEDLEEQKENKLKVLE 78 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333444444444444444333
No 72
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=49.21 E-value=1.5e+02 Score=24.28 Aligned_cols=75 Identities=8% Similarity=-0.030 Sum_probs=49.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMV----KLLTNAINLRGKQLAYKL 190 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~f----e~Li~~Leere~~LL~eL 190 (293)
-||.....+.+..+...+........................+..+........... +.++...+.+...++.+.
T Consensus 18 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a 96 (147)
T TIGR01144 18 PPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQA 96 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999888888877777777776666665555554443333 333343444444444433
No 73
>KOG1853|consensus
Probab=48.00 E-value=2.3e+02 Score=26.28 Aligned_cols=24 Identities=17% Similarity=0.335 Sum_probs=12.0
Q ss_pred eecCCCCCccccccCCCCCccccC
Q psy583 267 TLKSPSSSTSSKSVTPPSSSVNIP 290 (293)
Q Consensus 267 ~l~~~~~~~~~~~~~~~~~~~~~~ 290 (293)
.++.++.-.+-.+..||++++|.|
T Consensus 206 avqa~~slP~tP~~~gs~~~f~~p 229 (333)
T KOG1853|consen 206 AVQAPESLPDTPSPGGSKEEFKMP 229 (333)
T ss_pred hhcCcccCCCCCCCCCchhhcCCC
Confidence 334444434444445566666665
No 74
>KOG0933|consensus
Probab=47.76 E-value=4.3e+02 Score=29.33 Aligned_cols=28 Identities=29% Similarity=0.371 Sum_probs=20.6
Q ss_pred ccccCCccchhhhhHHHHHhhhhccchh
Q psy583 76 KDLEVNNSNLDDLKKTLANMMSDSEKLY 103 (293)
Q Consensus 76 ~~~~~~~~~~~~~~~~l~~~ce~c~~l~ 103 (293)
.++.++..-|.|++-+|++-.++-.-+.
T Consensus 701 ~~le~~~~kf~~l~~ql~l~~~~l~l~~ 728 (1174)
T KOG0933|consen 701 KSLEAQSQKFRDLKQQLELKLHELALLE 728 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667789999999998888765443
No 75
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=47.69 E-value=1.7e+02 Score=24.76 Aligned_cols=58 Identities=5% Similarity=-0.013 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVK 173 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe 173 (293)
-||..+..+....+..-|+.......+........+......+..+.....+-...-+
T Consensus 27 kPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~ 84 (154)
T PRK06568 27 KAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTK 84 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4889999999999999999888888888887777776666666555554444333333
No 76
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=47.65 E-value=3.1e+02 Score=27.64 Aligned_cols=58 Identities=28% Similarity=0.453 Sum_probs=37.5
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCchhhhhhhhhhhchHH---HHHHHHHHHHHHHHhhhhhhccc
Q psy583 7 LKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQL---ALKTLREKIQDLESQLSTKEKDL 78 (293)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 78 (293)
||---+.|--|+-.|.-..+-||+|.|. ..+-+++-|+ -||-||+.++.| |+.|-..|
T Consensus 322 Lk~tn~kQq~~IqdLq~sN~yLe~kvke-----------LQ~k~~kQqvfvDiinkLk~niEeL---IedKY~vi 382 (527)
T PF15066_consen 322 LKHTNRKQQNRIQDLQCSNLYLEKKVKE-----------LQMKITKQQVFVDIINKLKENIEEL---IEDKYRVI 382 (527)
T ss_pred HHhhhHHHHHHHHHhhhccHHHHHHHHH-----------HHHHhhhhhHHHHHHHHHHHHHHHH---HHhHhHhh
Confidence 4444556777788888888888888773 3333333332 478899999888 44454433
No 77
>KOG0837|consensus
Probab=47.18 E-value=1e+02 Score=28.62 Aligned_cols=47 Identities=17% Similarity=0.104 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 120 KWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQ 166 (293)
Q Consensus 120 eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~ 166 (293)
+|+.+++...-..|..++++...+......+......+++.+...++
T Consensus 216 eaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~~~v~e~k~ 262 (279)
T KOG0837|consen 216 EAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLKEQVAELKQ 262 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444443333333
No 78
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=47.02 E-value=2.3e+02 Score=25.92 Aligned_cols=45 Identities=13% Similarity=0.204 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 126 KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITE 170 (293)
Q Consensus 126 K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~ 170 (293)
...++..+..++...+.++.-+..+...+..++++....+..+..
T Consensus 40 ~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~ 84 (239)
T COG1579 40 LEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSA 84 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555566666667777777777777777777777766666533
No 79
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=46.31 E-value=2e+02 Score=25.07 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 178 AINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLS 212 (293)
Q Consensus 178 ~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L 212 (293)
.++++..+.....++.+......|..+..++...+
T Consensus 152 ~~ek~~~e~~~~~~k~~~~ei~~lk~~~~ql~~~l 186 (189)
T PF10211_consen 152 QLEKREEELRQEEEKKHQEEIDFLKKQNQQLKAQL 186 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444445555555555544444333
No 80
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=46.27 E-value=1.4e+02 Score=23.39 Aligned_cols=44 Identities=20% Similarity=0.327 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 129 IKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMV 172 (293)
Q Consensus 129 L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~f 172 (293)
....+..+..+++.++..+..+......+..+....+..+.+.+
T Consensus 65 ~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 65 KEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555666666666666666666666666666665555443
No 81
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=46.10 E-value=5e+02 Score=29.54 Aligned_cols=41 Identities=12% Similarity=0.194 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q psy583 191 NEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSD 231 (293)
Q Consensus 191 e~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk~gs~ 231 (293)
....+.+...+......+...+..+......+..-...|.+
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~y~~~~~~ 969 (1311)
T TIGR00606 929 ISSKETSNKKAQDKVNDIKEKVKNIHGYMKDIENKIQDGKD 969 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 34444455556666666666666666666666655554433
No 82
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=45.80 E-value=1.7e+02 Score=24.06 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q psy583 118 LDKWATETKHLIKGLLSEVSYK 139 (293)
Q Consensus 118 I~eAa~~~K~~L~~~L~~lk~k 139 (293)
+.+..--.|..|......+-..
T Consensus 30 ~sD~M~vTrr~m~~A~~~v~kq 51 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVASVSKQ 51 (126)
T ss_pred hhHHHHHHHHhHHHHHHHHHHH
Confidence 3443333344444444444443
No 83
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=45.53 E-value=1.4e+02 Score=24.42 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 128 LIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKL 174 (293)
Q Consensus 128 ~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~ 174 (293)
.-......+..+.+.++.-+..++.....+.++.+.+++.|...|..
T Consensus 67 ~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 67 SKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 44556666677777777777777777777777777777777776653
No 84
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=45.18 E-value=2.3e+02 Score=25.41 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q psy583 4 MSALKAKLKEQNQRLITLNHEKAKLEAR 31 (293)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (293)
|+++++.+.+-..|+-.+..+-...+.|
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~~~~~ 30 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKEAEKR 30 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887776664444433
No 85
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=45.14 E-value=2.3e+02 Score=25.48 Aligned_cols=187 Identities=19% Similarity=0.241 Sum_probs=100.7
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCchhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhhccccCCccchhh
Q psy583 8 KAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDD 87 (293)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (293)
++||.--+.|+..+... -+.+++++-..-.+ .++.+++.+..+...|..-.. .=.+
T Consensus 4 ~~KL~~i~e~~~~f~~~-le~e~~~Rr~~ee~----------------r~~~i~e~i~~Le~~l~~E~k-------~R~E 59 (247)
T PF06705_consen 4 KSKLASINERFSGFESD-LENEKRQRREQEEQ----------------RFQDIKEQIQKLEKALEAEVK-------RRVE 59 (247)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHH----------------HHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence 56666666676666554 34444444222111 345566666666544321111 1223
Q ss_pred hhHHHHHhhhhccchhhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy583 88 LKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDD-RQNLISEKKKRLTQ 166 (293)
Q Consensus 88 ~~~~l~~~ce~c~~l~c~~~eHk~H~~~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e-~~~~L~e~~e~v~~ 166 (293)
.-+.|...|+.--.-.- -.+...+..+...+...+..+-.+...+...+..... +...+......+..
T Consensus 60 ~~~~lq~~~e~~i~~~~-----------~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~ 128 (247)
T PF06705_consen 60 SNKKLQSKFEEQINNMQ-----------ERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVR 128 (247)
T ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45556665554433320 1234444555666677777777777766666654322 22233333333333
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy583 167 EI---TEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTG 229 (293)
Q Consensus 167 eI---~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk~g 229 (293)
+| ...|+.=...-.+++..++..|......-...+......-+..+..|...++.+...-..+
T Consensus 129 ~l~~l~~~~~~Er~~R~erE~~i~krl~e~~~~l~~~i~~Ek~~Re~~~~~l~~~le~~~~~~~~~ 194 (247)
T PF06705_consen 129 ELNELQEAFENERNEREEREENILKRLEEEENRLQEKIEKEKNTRESKLSELRSELEEVKRRREKG 194 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 22 2233333333455677777888888888888888888877777777777777666554333
No 86
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=44.32 E-value=2e+02 Score=24.46 Aligned_cols=82 Identities=9% Similarity=0.125 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhhccchhh-hhccccccccccchHHHHHHHHHHHHHHHHHHHHH
Q psy583 61 REKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYN-VYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYK 139 (293)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~l~c-~~~eHk~H~~~~~I~eAa~~~K~~L~~~L~~lk~k 139 (293)
+|....+.+++. ++.-++++++...-++..-+.|-..-..+.- .-..-++|.. .+++++...+..|.+....++..
T Consensus 6 ~e~~~~~~~~~~-~~~~~~~~~Ev~~aik~~sd~~~~~l~~~~~~l~eeik~~n~--~~~e~l~~~~~kl~et~~~L~k~ 82 (155)
T PF07464_consen 6 QEFQKEFQEQVN-KLLGSQNQQEVVKAIKEQSDSVAQQLQNVSSSLQEEIKDANP--EAEEALKQLKTKLEETAEKLRKA 82 (155)
T ss_dssp HHHHHHHHHHHH-HHTSS--SS-SSHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS--THHHHHHHHHHHHHHHHHGGGG-
T ss_pred HHHHHHHHHHHH-HHhCCCcHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCh--hHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444433 2233366666777777777777777666655 2333444442 47777777777777777766655
Q ss_pred HHHHHH
Q psy583 140 RVLLKS 145 (293)
Q Consensus 140 ~~~le~ 145 (293)
.+++..
T Consensus 83 ~Pev~~ 88 (155)
T PF07464_consen 83 NPEVEK 88 (155)
T ss_dssp SHHHHH
T ss_pred ChHHHH
Confidence 444443
No 87
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=44.00 E-value=2.4e+02 Score=25.38 Aligned_cols=115 Identities=9% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
Q psy583 120 KWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITE----------MVKLLTNAINLRGKQLAYK 189 (293)
Q Consensus 120 eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~----------~fe~Li~~Leere~~LL~e 189 (293)
+.+...+..|..-+..+...++.++.....+.......+........+|.. ....|+..|+.--..=+--
T Consensus 45 d~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf 124 (251)
T PF11932_consen 45 DQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPF 124 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccCCcchh
Q psy583 190 LNEICDSKQKTLNEKKVTLEQLSR-LTDHCIEFVNNGLNTGSDMAL 234 (293)
Q Consensus 190 Le~~~~~kl~~L~~q~~~le~~L~-~L~~~i~fveq~Lk~gs~~e~ 234 (293)
+..++...+..|...+..-..... .++..++....-+..|..+++
T Consensus 125 ~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vlea~~~E~~yg~~i~~ 170 (251)
T PF11932_consen 125 LLEERQERLARLRAMLDDADVSLAEKFRRVLEAYQIEMEYGRTIEV 170 (251)
T ss_pred ChHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHhCCceeE
No 88
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=43.10 E-value=2e+02 Score=24.10 Aligned_cols=111 Identities=5% Similarity=-0.052 Sum_probs=59.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 118 LDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEIT---EMVKLLTNAINLRGKQLAYKLNEIC 194 (293)
Q Consensus 118 I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~---~~fe~Li~~Leere~~LL~eLe~~~ 194 (293)
|.+...++...+..-|..++..+..+...-.....-...+..........+. ..+..+-.-|+++--..++.+....
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~ 102 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4555555555555555555555555554444433333333333222222111 1222222333333323445555556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy583 195 DSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNT 228 (293)
Q Consensus 195 ~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk~ 228 (293)
...+..|+..+......+..|+..++...+..+.
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~i~~~~~~Ck~ 136 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQDIDQQERYCKE 136 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 6667788888888888888888888887777753
No 89
>KOG0964|consensus
Probab=43.04 E-value=5.1e+02 Score=28.77 Aligned_cols=173 Identities=20% Similarity=0.256 Sum_probs=82.4
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhhhhhhhh-hhcCCCCCch--hhhhhh--hhhhc-----hHHHHHHHHHHHHHHHHhh
Q psy583 2 AEMSALKAKLKEQNQRLITLNHEKAKLEAR-TKANPGAHAD--EQEQTN--LLISK-----KQLALKTLREKIQDLESQL 71 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~ 71 (293)
.+|..++.+++|-+--|-.|.-||..++|| ||+-..-+.- .+..|. .+|.. .-=.|+.+++++..-+..+
T Consensus 265 d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL 344 (1200)
T KOG0964|consen 265 DESEDLKCEIKELENKLTNLREEKEQLKARETKISKKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDEL 344 (1200)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999998 2211100000 000000 11110 1114566677777666554
Q ss_pred hhhhccccCCccchhhhhHHHHHhhhhccchhhhhcccccc-ccccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 72 STKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNI-NSGLQLDK---WATETKHLIKGLLSEVSYKRVLLKSAM 147 (293)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~l~c~~~eHk~H-~~~~~I~e---Aa~~~K~~L~~~L~~lk~k~~~le~~l 147 (293)
++-..-...-...=++.++.|.-+=..-..++- .++- ..|.+.++ .....-..|...+....+....++.-+
T Consensus 345 ~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~----Kqgr~sqFssk~eRDkwir~ei~~l~~~i~~~ke~e~~lq~e~ 420 (1200)
T KOG0964|consen 345 SKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLA----KQGRYSQFSSKEERDKWIRSEIEKLKRGINDTKEQENILQKEI 420 (1200)
T ss_pred HHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHH----hhccccccCcHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 322211111122344555555554444444442 1111 12322222 111112233344444444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 148 KVIDDRQNLISEKKKRLTQEITEMVKLLTNA 178 (293)
Q Consensus 148 ~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~ 178 (293)
..++.......++.......|.+.-.+|..+
T Consensus 421 ~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~ 451 (1200)
T KOG0964|consen 421 EDLESELKEKLEEIKELESSINETKGRMEEF 451 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhHHHHH
Confidence 5555555555555556666666433334333
No 90
>PRK12495 hypothetical protein; Provisional
Probab=42.55 E-value=12 Score=33.67 Aligned_cols=45 Identities=16% Similarity=0.109 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHh--hhhhhccccCCccchhhhhHHHHHhhhhccchhh
Q psy583 54 QLALKTLREKIQDLESQ--LSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYN 104 (293)
Q Consensus 54 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~l~c 104 (293)
+--=.-|+|||..=++. -.++|+.+ +--..+.+.++|++|+.+|.
T Consensus 7 EaEREkLREKye~d~~~R~~~~~ma~l------L~~gatmsa~hC~~CG~PIp 53 (226)
T PRK12495 7 EAEREKLREKYEQDEQKREATERMSEL------LLQGATMTNAHCDECGDPIF 53 (226)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHH------HHhhcccchhhcccccCccc
Confidence 33445789999876543 33455544 33356788889999988875
No 91
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=42.50 E-value=4.9e+02 Score=28.43 Aligned_cols=9 Identities=11% Similarity=-0.023 Sum_probs=5.6
Q ss_pred ceeeecCCC
Q psy583 264 YKITLKSPS 272 (293)
Q Consensus 264 ~~l~l~~~~ 272 (293)
|++||-|+.
T Consensus 573 gr~tflpl~ 581 (1164)
T TIGR02169 573 GRATFLPLN 581 (1164)
T ss_pred CCeeeccHh
Confidence 567776653
No 92
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=42.25 E-value=3.8e+02 Score=27.05 Aligned_cols=60 Identities=18% Similarity=0.287 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 127 HLIKGLLSEVSYKRVLLKSAMK---VIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQL 186 (293)
Q Consensus 127 ~~L~~~L~~lk~k~~~le~~l~---~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~L 186 (293)
+.|+.++..++.-...+..++. .+...-+.|+.+-..+..+|...++.....+.++.+.|
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql 121 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQL 121 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3455555444444444444333 35555556666666666666666665444444444433
No 93
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=42.10 E-value=3.7e+02 Score=26.99 Aligned_cols=89 Identities=9% Similarity=0.026 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 127 HLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEIT----------EMVKLLTNAINLRGKQLAYKLNEICDS 196 (293)
Q Consensus 127 ~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~----------~~fe~Li~~Leere~~LL~eLe~~~~~ 196 (293)
..|+..+..++..+..+...+..++....-|..........+. .....+..++..+..++..++. ....
T Consensus 74 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 152 (525)
T TIGR02231 74 AELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR-EAER 152 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3455555555555555555555555555444443322211111 1233344455555555544442 2334
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy583 197 KQKTLNEKKVTLEQLSRLTD 216 (293)
Q Consensus 197 kl~~L~~q~~~le~~L~~L~ 216 (293)
++..+.+++..++..+..+.
T Consensus 153 ~~~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 153 RIRELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44455555555555554443
No 94
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=41.74 E-value=4.2e+02 Score=27.49 Aligned_cols=9 Identities=22% Similarity=0.253 Sum_probs=6.0
Q ss_pred hhhhhhhch
Q psy583 45 QTNLLISKK 53 (293)
Q Consensus 45 ~~~~~~~~~ 53 (293)
.+|++|..+
T Consensus 292 ~~p~~l~~~ 300 (650)
T TIGR03185 292 PLPLLLIPN 300 (650)
T ss_pred cCCHhhhHH
Confidence 578888443
No 95
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=41.67 E-value=2.2e+02 Score=24.09 Aligned_cols=51 Identities=12% Similarity=0.057 Sum_probs=37.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQ 166 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~ 166 (293)
-||..+..+....+..-|...+....+.............+.+.++.....
T Consensus 29 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~ 79 (161)
T COG0711 29 KPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIE 79 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999988888777777766666655555544444333
No 96
>PRK11637 AmiB activator; Provisional
Probab=41.64 E-value=3.5e+02 Score=26.46 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=17.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhhhhhh
Q psy583 5 SALKAKLKEQNQRLITLNHEKAKLEARTK 33 (293)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (293)
++++.++++..+.+=.+.++...+...-+
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~ 71 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRA 71 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777777777666666665544443
No 97
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=40.64 E-value=5.7e+02 Score=28.67 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=11.5
Q ss_pred ceeeecCCCCCccccccCCC
Q psy583 264 YKITLKSPSSSTSSKSVTPP 283 (293)
Q Consensus 264 ~~l~l~~~~~~~~~~~~~~~ 283 (293)
++.||-++..-....+..++
T Consensus 567 gr~tflpl~~i~~~~~~~~~ 586 (1163)
T COG1196 567 GRATFLPLDRIKPLRSLKSD 586 (1163)
T ss_pred CccccCchhhhccccccccc
Confidence 56677666666555544433
No 98
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=40.57 E-value=5.8e+02 Score=28.75 Aligned_cols=13 Identities=46% Similarity=0.767 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhh
Q psy583 59 TLREKIQDLESQL 71 (293)
Q Consensus 59 ~~~~~~~~~~~~~ 71 (293)
.|++.+..+..++
T Consensus 604 ~L~~~l~~~~~~l 616 (1201)
T PF12128_consen 604 ELRERLEQAEDQL 616 (1201)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 99
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=40.36 E-value=2.5e+02 Score=24.46 Aligned_cols=8 Identities=0% Similarity=-0.118 Sum_probs=6.1
Q ss_pred HHhhhhcc
Q psy583 93 ANMMSDSE 100 (293)
Q Consensus 93 ~~~ce~c~ 100 (293)
.|||..-.
T Consensus 76 ~FyC~N~g 83 (176)
T PF12999_consen 76 KFYCENKG 83 (176)
T ss_pred eEeeccCC
Confidence 78888764
No 100
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=39.85 E-value=4.5e+02 Score=27.29 Aligned_cols=133 Identities=20% Similarity=0.169 Sum_probs=61.0
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCchhhhhhhhhhhchHHHHHHHHHHHHHHHHh--hhhhhccc-
Q psy583 2 AEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQ--LSTKEKDL- 78 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~- 78 (293)
+|+..|+.+|.+=..++..+..+...+.+.-+.-. - .+...+.....++++ +.+++.++
T Consensus 328 ~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~-----------~-------e~~~~~~~~~~le~~~~l~~k~~~lL 389 (594)
T PF05667_consen 328 QELEELQEQLDELESQIEELEAEIKMLKSSLKQLE-----------E-------ELEEKEAENEELEEELKLKKKTVELL 389 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666666666666666555554433111 0 222222222222222 33444444
Q ss_pred cCCccchhhhhHHHHHhhhhccchhh-hhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 79 EVNNSNLDDLKKTLANMMSDSEKLYN-VYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLI 157 (293)
Q Consensus 79 ~~~~~~~~~~~~~l~~~ce~c~~l~c-~~~eHk~H~~~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L 157 (293)
+++..+. ..|..+|+.-..-.- .-..=..|. .|+.+-+...+..........+.+...++.+...++....++
T Consensus 390 ~d~e~ni----~kL~~~v~~s~~rl~~L~~qWe~~R--~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~ 463 (594)
T PF05667_consen 390 PDAEENI----AKLQALVEASEQRLVELAQQWEKHR--APLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEI 463 (594)
T ss_pred cCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 667777776544322 111111222 255555555555544444444444444554444444444443
Q ss_pred H
Q psy583 158 S 158 (293)
Q Consensus 158 ~ 158 (293)
+
T Consensus 464 ~ 464 (594)
T PF05667_consen 464 R 464 (594)
T ss_pred H
Confidence 3
No 101
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=39.81 E-value=4.4e+02 Score=27.12 Aligned_cols=88 Identities=18% Similarity=0.177 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy583 118 LDKWATETKHLIKGLLSEV--SYKRVLLKSAMKVIDDR-------QNLISEKKKRLTQEITEMVKLLT---NAINLRGKQ 185 (293)
Q Consensus 118 I~eAa~~~K~~L~~~L~~l--k~k~~~le~~l~~l~e~-------~~~L~e~~e~v~~eI~~~fe~Li---~~Leere~~ 185 (293)
++..+..++.........+ +...+.++.-+..+... .....+..+.+..+|......+. +.|....+.
T Consensus 169 ~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~ 248 (555)
T TIGR03545 169 IEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQ 248 (555)
T ss_pred HHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3444444444555555444 33344444444443321 11233344444444444333322 244444555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy583 186 LAYKLNEICDSKQKTLNEKK 205 (293)
Q Consensus 186 LL~eLe~~~~~kl~~L~~q~ 205 (293)
+..++.....+....+....
T Consensus 249 ~~~~~~~lk~ap~~D~~~L~ 268 (555)
T TIGR03545 249 LKADLAELKKAPQNDLKRLE 268 (555)
T ss_pred HHHHHHHHHhccHhHHHHHH
Confidence 55555554444444444333
No 102
>KOG0979|consensus
Probab=39.42 E-value=5.7e+02 Score=28.34 Aligned_cols=79 Identities=27% Similarity=0.268 Sum_probs=37.8
Q ss_pred hhhhhhhhhhhhhh----cCCCCCchhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHh
Q psy583 20 TLNHEKAKLEARTK----ANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANM 95 (293)
Q Consensus 20 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 95 (293)
||.|+|-.==||-. --++--|.|.+..+.+- +.|.+|.+.-..+......++.-|.-=.---+.+++-.+.|
T Consensus 146 FLpQDkV~EFa~L~pi~LL~eTekAig~~~ll~~h----~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~ 221 (1072)
T KOG0979|consen 146 FLPQDKVKEFARLSPIELLVETEKAIGAEELLQYH----IELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERV 221 (1072)
T ss_pred hccHHHHHHHHcCChHHHHHHHHHhcCchhhHHHH----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 67887754333322 11222344555566643 35555555555554444444333311111223456667777
Q ss_pred hhhccch
Q psy583 96 MSDSEKL 102 (293)
Q Consensus 96 ce~c~~l 102 (293)
|+--...
T Consensus 222 rer~~~~ 228 (1072)
T KOG0979|consen 222 RERERKK 228 (1072)
T ss_pred HHHHHHH
Confidence 7665544
No 103
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=39.12 E-value=6.5e+02 Score=28.88 Aligned_cols=35 Identities=20% Similarity=0.329 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCC
Q psy583 3 EMSALKAKLKEQNQRLITLNHEKAKLEARTKANPG 37 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (293)
++++|...+.+--.++-+|.+..+.|.++-.+=|+
T Consensus 750 ~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~~~Ps 784 (1353)
T TIGR02680 750 RLAAVDDELAELARELRALGARQRALADELAGAPS 784 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 56778888888888888888888888888776664
No 104
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=38.75 E-value=5.5e+02 Score=27.93 Aligned_cols=32 Identities=13% Similarity=0.106 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy583 196 SKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLN 227 (293)
Q Consensus 196 ~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk 227 (293)
.....|..|...+......|...+..+...+.
T Consensus 993 er~~~l~~q~~dL~~~~~~L~~~i~~i~~~~~ 1024 (1179)
T TIGR02168 993 EEYEELKERYDFLTAQKEDLTEAKETLEEAIE 1024 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677777777777777777777776664
No 105
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=38.52 E-value=2.8e+02 Score=24.53 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q psy583 160 KKKRLTQEITEMVKL 174 (293)
Q Consensus 160 ~~e~v~~eI~~~fe~ 174 (293)
+.......|.....+
T Consensus 60 ~~~~~~~~~~~~~~~ 74 (219)
T TIGR02977 60 RVSRLEAQVADWQEK 74 (219)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 106
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=37.13 E-value=4.7e+02 Score=26.72 Aligned_cols=22 Identities=9% Similarity=-0.106 Sum_probs=12.2
Q ss_pred CCcchhccchhHHHHHHHHHhh
Q psy583 229 GSDMALLSSKAYKRVLLKSAMK 250 (293)
Q Consensus 229 gs~~e~L~~kk~l~eRl~~L~~ 250 (293)
|-|..++.....+..++..+..
T Consensus 441 gip~~y~~~~~~~~~~i~~l~~ 462 (569)
T PRK04778 441 GLPEDYLEMFFEVSDEIEALAE 462 (569)
T ss_pred CCcHHHHHHHHHHHHHHHHHHH
Confidence 3344555555566666666633
No 107
>KOG4367|consensus
Probab=37.00 E-value=4.5e+02 Score=26.41 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=36.3
Q ss_pred chhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhhccchhh
Q psy583 40 ADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYN 104 (293)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~l~c 104 (293)
..|+..||--. .|.+.-+.|+. +|++.+. =--|..--+.-..|||.|+..+|
T Consensus 136 d~~l~~~p~n~-----~le~vi~ryq~------s~~aa~k--cqlce~a~k~a~v~ceqcdv~yc 187 (699)
T KOG4367|consen 136 DRGLRGFPKNR-----VLEGVIDRYQQ------SKAAALK--CQLCEKAPKEATVMCEQCDVFYC 187 (699)
T ss_pred ccccccCchhh-----HHHHHHHHHhh------hhHHhhh--hhhhcCChhhhhhhHhhCceEEe
Confidence 34677888766 88888777732 2333331 12677777888999999999998
No 108
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.72 E-value=3.4e+02 Score=24.96 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=25.9
Q ss_pred hccchhHHHHHHHHHhhhcCCCCCCCCCCcceeeecCCCCCccc
Q psy583 234 LLSSKAYKRVLLKSAMKVIDDRPTIPEDTSYKITLKSPSSSTSS 277 (293)
Q Consensus 234 ~L~~kk~l~eRl~~L~~~~~~~p~~p~~~~~~l~l~~~~~~~~~ 277 (293)
.+.....+..|+..+...... ..-.+++..||+++++...+-
T Consensus 87 ~~t~~~~ie~~l~~l~~~aG~--v~V~G~Gl~ITi~d~~~~~~~ 128 (247)
T COG3879 87 VLTDDAALEDRLEKLRMLAGS--VPVTGPGLVITIDDPGYSPNG 128 (247)
T ss_pred HHhHHHHHHHHHHHHHHHhcc--CCCcCCcEEEEecCCCCCccc
Confidence 344455555667777444332 234566689999998877665
No 109
>KOG4001|consensus
Probab=36.15 E-value=3.2e+02 Score=24.53 Aligned_cols=12 Identities=8% Similarity=-0.081 Sum_probs=4.8
Q ss_pred HHhhhhccchhh
Q psy583 93 ANMMSDSEKLYN 104 (293)
Q Consensus 93 ~~~ce~c~~l~c 104 (293)
..-|-.-+-++|
T Consensus 141 s~scveRGlll~ 152 (259)
T KOG4001|consen 141 SVSCVERGLLLV 152 (259)
T ss_pred chhHHhcceeEE
Confidence 333444444433
No 110
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=35.94 E-value=3.3e+02 Score=24.52 Aligned_cols=16 Identities=13% Similarity=-0.012 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy583 200 TLNEKKVTLEQLSRLT 215 (293)
Q Consensus 200 ~L~~q~~~le~~L~~L 215 (293)
.+......+...+..|
T Consensus 118 ~ie~~~~~l~~~l~~l 133 (247)
T PF06705_consen 118 DIEELNQELVRELNEL 133 (247)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 111
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=35.44 E-value=3.2e+02 Score=24.33 Aligned_cols=100 Identities=11% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 122 ATETKHLIKGLL---SEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQ 198 (293)
Q Consensus 122 a~~~K~~L~~~L---~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl 198 (293)
+.+.|..+.++- ..++..+..+..-+.....+...++..++.-...-...+..+..-...+-..|-..|+. .+-+.
T Consensus 99 yek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk-~e~~~ 177 (207)
T PF05010_consen 99 YEKQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQASLKK-EEMKV 177 (207)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 199 KTLNEKKVTLEQLSRLTDHCIEFV 222 (293)
Q Consensus 199 ~~L~~q~~~le~~L~~L~~~i~fv 222 (293)
..|...+.+-......|...|+.+
T Consensus 178 ~SLe~~LeQK~kEn~ELtkICDeL 201 (207)
T PF05010_consen 178 QSLEESLEQKTKENEELTKICDEL 201 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
No 112
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.37 E-value=4.5e+02 Score=25.91 Aligned_cols=63 Identities=10% Similarity=0.091 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 154 QNLISEKKKRLTQEITEMVKLLTNA---INLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTD 216 (293)
Q Consensus 154 ~~~L~e~~e~v~~eI~~~fe~Li~~---Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~ 216 (293)
..+-+.+.+.+++++....+..-.- |...-..+-++++....++.+.+.+-++.+...+..|+
T Consensus 253 LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 253 LQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3333444455555554444422211 23333333345555666666666666666666666666
No 113
>PLN02372 violaxanthin de-epoxidase
Probab=35.37 E-value=4.6e+02 Score=26.07 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 152 DRQNLISEKKKRLTQEITEMVKL--LT---NAINLRGKQLAYKLNEICDSKQKTLNEKKVT 207 (293)
Q Consensus 152 e~~~~L~e~~e~v~~eI~~~fe~--Li---~~Leere~~LL~eLe~~~~~kl~~L~~q~~~ 207 (293)
....+|...++.+...+...|.+ +. ..|++.+...+.+|.++..+.+..+......
T Consensus 383 ~~~~e~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~~~~~ 443 (455)
T PLN02372 383 QIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKMEASE 443 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 33445555555555555555554 22 2233334444444444444444444333333
No 114
>KOG0804|consensus
Probab=35.29 E-value=4.8e+02 Score=26.24 Aligned_cols=14 Identities=36% Similarity=0.240 Sum_probs=6.4
Q ss_pred ceeeecCCCCCccc
Q psy583 264 YKITLKSPSSSTSS 277 (293)
Q Consensus 264 ~~l~l~~~~~~~~~ 277 (293)
+.|++.+++...++
T Consensus 467 gtI~~~~~s~~~~~ 480 (493)
T KOG0804|consen 467 GTILITQISPSSSS 480 (493)
T ss_pred ceeeccCCCCCccc
Confidence 44554444444433
No 115
>KOG0804|consensus
Probab=34.28 E-value=5e+02 Score=26.12 Aligned_cols=29 Identities=17% Similarity=0.023 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 193 ICDSKQKTLNEKKVTLEQLSRLTDHCIEF 221 (293)
Q Consensus 193 ~~~~kl~~L~~q~~~le~~L~~L~~~i~f 221 (293)
...+.......++..|+.+++.|.-.++.
T Consensus 425 ~~~~~~~s~d~~I~dLqEQlrDlmf~le~ 453 (493)
T KOG0804|consen 425 REKEALGSKDEKITDLQEQLRDLMFFLEA 453 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHheehhh
Confidence 33344455566666677666666555543
No 116
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.12 E-value=7.5e+02 Score=28.14 Aligned_cols=13 Identities=31% Similarity=0.526 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHH
Q psy583 56 ALKTLREKIQDLE 68 (293)
Q Consensus 56 ~~~~~~~~~~~~~ 68 (293)
.|..+++.|....
T Consensus 640 ~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 640 DLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHH
Confidence 5566666665554
No 117
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=34.02 E-value=5.7e+02 Score=26.76 Aligned_cols=101 Identities=7% Similarity=0.057 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 143 LKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFV 222 (293)
Q Consensus 143 le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fv 222 (293)
.+.....+..+...+..+......++..-=..+-.+-+.+..=++.+++. +-.+..++=.++........+...+
T Consensus 376 ~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~~~r~dW~laEae~-----Ll~lA~q~L~l~~dv~~A~~~L~~A 450 (656)
T PRK06975 376 AQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLSRNRDDWMIAEVEQ-----MLSSASQQLQLTGNVQLALIALQNA 450 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 33344444444444444444433333222222222223344445555554 4455555556666666666666666
Q ss_pred HhhhccCCcchhccchhHHHHHHHHH
Q psy583 223 NNGLNTGSDMALLSSKAYKRVLLKSA 248 (293)
Q Consensus 223 eq~Lk~gs~~e~L~~kk~l~eRl~~L 248 (293)
...|..-++..++..++.+..=+..|
T Consensus 451 D~~La~~~~P~l~~lR~Ala~Di~~L 476 (656)
T PRK06975 451 DARLATSDSPQAVAVRKAIAQDIERL 476 (656)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 66665555555655555554444433
No 118
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.67 E-value=3.6e+02 Score=24.38 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 122 ATETKHLIKGLLSEVSYKRVLLKSA 146 (293)
Q Consensus 122 a~~~K~~L~~~L~~lk~k~~~le~~ 146 (293)
+++.+..|..-+..++..-..+.++
T Consensus 13 lek~k~~i~~e~~~~e~ee~~L~e~ 37 (230)
T PF10146_consen 13 LEKLKNEILQEVESLENEEKCLEEY 37 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666555555544434333
No 119
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=33.48 E-value=2.1e+02 Score=21.45 Aligned_cols=28 Identities=7% Similarity=0.004 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 194 CDSKQKTLNEKKVTLEQLSRLTDHCIEF 221 (293)
Q Consensus 194 ~~~kl~~L~~q~~~le~~L~~L~~~i~f 221 (293)
+..|+..+...+..+...+..+......
T Consensus 62 y~~KL~~ikkrm~~l~~~l~~lk~R~~~ 89 (92)
T PF14712_consen 62 YVKKLVNIKKRMSNLHERLQKLKKRADK 89 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777777777777666655443
No 120
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=33.43 E-value=2.3e+02 Score=21.96 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 129 IKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITE 170 (293)
Q Consensus 129 L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~ 170 (293)
.......+..+++.+...+..+......+..+....+..|.+
T Consensus 61 ~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 61 KEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555555555555555443
No 121
>KOG0243|consensus
Probab=32.97 E-value=7.3e+02 Score=27.66 Aligned_cols=70 Identities=19% Similarity=0.126 Sum_probs=46.9
Q ss_pred hhhhhcCCCCCchhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhh
Q psy583 29 EARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSD 98 (293)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~ 98 (293)
-||.|-|.--..+-..+-..-+.++..-|..|++++..+..++..-....-+....|.+|.+.+.-+=..
T Consensus 422 AaReKnGvyisee~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~ 491 (1041)
T KOG0243|consen 422 AAREKNGVYISEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSK 491 (1041)
T ss_pred HhHhhCceEechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3788888766555554444457777888999999999988887766666654444666666555444333
No 122
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=32.91 E-value=4.2e+02 Score=24.91 Aligned_cols=85 Identities=25% Similarity=0.327 Sum_probs=52.5
Q ss_pred hhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhhccchhhhhccccccccccchHH
Q psy583 41 DEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDK 120 (293)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~l~c~~~eHk~H~~~~~I~e 120 (293)
..+-=+|+.= |++++-+||-++-..+..+....+.| .|++.+|.-+=||= |+|
T Consensus 56 PEQYLTPLQQ--KEV~iRHLkakLkes~~~l~dRetEI-------~eLksQL~RMrEDW------------------IEE 108 (305)
T PF15290_consen 56 PEQYLTPLQQ--KEVCIRHLKAKLKESENRLHDRETEI-------DELKSQLARMREDW------------------IEE 108 (305)
T ss_pred HHHhcChHHH--HHHHHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHHHHHH------------------HHH
Confidence 3444456654 99999999998888876655444444 56888887665441 232
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 121 WATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQ 154 (293)
Q Consensus 121 Aa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~ 154 (293)
. -||.+-+-.|..++..++.++.++..++..+
T Consensus 109 E--CHRVEAQLALKEARkEIkQLkQvieTmrssL 140 (305)
T PF15290_consen 109 E--CHRVEAQLALKEARKEIKQLKQVIETMRSSL 140 (305)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 2 2344555566777777666666665554443
No 123
>KOG0250|consensus
Probab=32.56 E-value=7.5e+02 Score=27.65 Aligned_cols=17 Identities=35% Similarity=0.393 Sum_probs=10.0
Q ss_pred CCCCCCc-ceeeecCCCC
Q psy583 257 TIPEDTS-YKITLKSPSS 273 (293)
Q Consensus 257 ~~p~~~~-~~l~l~~~~~ 273 (293)
.+|.|+- .++||..|-.
T Consensus 493 ~~P~GPlG~~Vtl~~~KW 510 (1074)
T KOG0250|consen 493 TPPKGPLGKYVTLKEPKW 510 (1074)
T ss_pred CCCCCCccceeEecCcHH
Confidence 3455553 5788877643
No 124
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=32.28 E-value=3.4e+02 Score=23.60 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 169 TEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLN 202 (293)
Q Consensus 169 ~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~ 202 (293)
...|+.|+.|++- ..+.+..-++++.+|-
T Consensus 78 DKDFDKL~EFVEI-----MKeMQkDMDEKMDvLi 106 (205)
T PF15079_consen 78 DKDFDKLHEFVEI-----MKEMQKDMDEKMDVLI 106 (205)
T ss_pred hhhHHHHHHHHHH-----HHHHHHhHHHhhhHHh
Confidence 4578888888854 3445555555555543
No 125
>KOG0161|consensus
Probab=32.22 E-value=9.6e+02 Score=28.81 Aligned_cols=39 Identities=15% Similarity=0.101 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 171 MVKLLTNAINLRGKQ---LAYKLNEICDSKQKTLNEKKVTLE 209 (293)
Q Consensus 171 ~fe~Li~~Leere~~---LL~eLe~~~~~kl~~L~~q~~~le 209 (293)
.|.+|++.|++.... .+..++..+...+..+..+.+.+.
T Consensus 1161 e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~qle~l~ 1202 (1930)
T KOG0161|consen 1161 EVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQLEQLQ 1202 (1930)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666554333 333444444445555555554444
No 126
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=31.26 E-value=8.1e+02 Score=27.65 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=6.2
Q ss_pred cchhhhhHHHHHh
Q psy583 83 SNLDDLKKTLANM 95 (293)
Q Consensus 83 ~~~~~~~~~l~~~ 95 (293)
..++.+-.....|
T Consensus 327 ~~L~~i~~~~~~y 339 (1201)
T PF12128_consen 327 SELDEIEQQKKDY 339 (1201)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444555555
No 127
>KOG4568|consensus
Probab=31.15 E-value=5.1e+02 Score=27.37 Aligned_cols=21 Identities=19% Similarity=0.127 Sum_probs=18.3
Q ss_pred cchhhhhHHHHHhhhhccchh
Q psy583 83 SNLDDLKKTLANMMSDSEKLY 103 (293)
Q Consensus 83 ~~~~~~~~~l~~~ce~c~~l~ 103 (293)
++=.||..+...||+-|++..
T Consensus 451 ~~~s~~q~~~~~~~~~~~t~~ 471 (664)
T KOG4568|consen 451 SNDSDHQRESQTLCESCETSG 471 (664)
T ss_pred cccchhhcchhhhhhhccccc
Confidence 366789999999999999985
No 128
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=30.81 E-value=6.3e+02 Score=26.26 Aligned_cols=54 Identities=11% Similarity=0.134 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 127 HLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAIN 180 (293)
Q Consensus 127 ~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Le 180 (293)
.++-.+|......+..++.++..-..+...|..+-+.++.-+...+..|.....
T Consensus 383 ~k~~~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~ 436 (594)
T PF05667_consen 383 KKTVELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKAS 436 (594)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344444555555556666666666666666666666666655555555554433
No 129
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=30.69 E-value=6e+02 Score=26.01 Aligned_cols=28 Identities=11% Similarity=0.107 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 177 NAINLRGKQLAYKLNEICDSKQKTLNEK 204 (293)
Q Consensus 177 ~~Leere~~LL~eLe~~~~~kl~~L~~q 204 (293)
.++++.+..++.+++..++.-.+....+
T Consensus 455 ~~~e~~~~~~~~ql~~Le~k~~~a~~rk 482 (542)
T PF10079_consen 455 GLVEKNESKILKQLDYLEKKLLKAEKRK 482 (542)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555554444433333
No 130
>KOG4571|consensus
Probab=30.45 E-value=3.5e+02 Score=25.49 Aligned_cols=22 Identities=18% Similarity=0.358 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy583 149 VIDDRQNLISEKKKRLTQEITE 170 (293)
Q Consensus 149 ~l~e~~~~L~e~~e~v~~eI~~ 170 (293)
.+..+-.+|++++..++.+|.-
T Consensus 259 ~Le~rN~~LK~qa~~lerEI~y 280 (294)
T KOG4571|consen 259 GLEKRNEELKDQASELEREIRY 280 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666655555543
No 131
>PRK09343 prefoldin subunit beta; Provisional
Probab=30.37 E-value=2.7e+02 Score=22.36 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 128 LIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVK 173 (293)
Q Consensus 128 ~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe 173 (293)
...+....+..+++.+..-+..++.....+..+....+..|...+.
T Consensus 68 d~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 68 DKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555556666666655555555566666665555555554443
No 132
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=30.02 E-value=3.3e+02 Score=22.82 Aligned_cols=17 Identities=24% Similarity=0.401 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy583 189 KLNEICDSKQKTLNEKK 205 (293)
Q Consensus 189 eLe~~~~~kl~~L~~q~ 205 (293)
+++.....+...|.++-
T Consensus 122 ~vdee~~~~~~~l~e~Y 138 (145)
T PF14942_consen 122 RVDEEFREKEERLKEQY 138 (145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 133
>KOG4185|consensus
Probab=30.00 E-value=4.4e+02 Score=24.14 Aligned_cols=35 Identities=26% Similarity=0.394 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 165 TQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQK 199 (293)
Q Consensus 165 ~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~ 199 (293)
..+|...+......+..++.+....+-.+......
T Consensus 184 ~~ei~~~~~~~~~~~~~~e~~~~~~~c~ic~~~~~ 218 (296)
T KOG4185|consen 184 VDEIKRHYDKIRELVDEREKEIIEKLCEICERIYS 218 (296)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhh
Confidence 44555566666777777776666666665555544
No 134
>KOG4848|consensus
Probab=29.95 E-value=4e+02 Score=23.70 Aligned_cols=38 Identities=18% Similarity=0.178 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 162 KRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQK 199 (293)
Q Consensus 162 e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~ 199 (293)
+....+|.+.|.=-+.--..+-+++|++.+.+...+++
T Consensus 170 erli~eiqe~fGy~vDprd~RF~emLqqkEkeekK~~K 207 (225)
T KOG4848|consen 170 ERLIREIQEYFGYWVDPRDPRFEEMLQQKEKEEKKAVK 207 (225)
T ss_pred HHHHHHHHHHhCccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 33334444443332333344566666666665555443
No 135
>KOG0971|consensus
Probab=29.94 E-value=8e+02 Score=27.17 Aligned_cols=16 Identities=19% Similarity=0.065 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy583 199 KTLNEKKVTLEQLSRL 214 (293)
Q Consensus 199 ~~L~~q~~~le~~L~~ 214 (293)
..|+..+++++..-..
T Consensus 1029 daLq~di~~lEsek~e 1044 (1243)
T KOG0971|consen 1029 DALQADIDQLESEKAE 1044 (1243)
T ss_pred HHHHHHHHHHHhhHHH
Confidence 3333334444333333
No 136
>KOG4460|consensus
Probab=29.94 E-value=6.5e+02 Score=26.13 Aligned_cols=26 Identities=27% Similarity=0.179 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhhhh
Q psy583 6 ALKAKLKEQNQRLITLNHEKAKLEAR 31 (293)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (293)
.|+-+.++|-|||-.+.+|...++-|
T Consensus 592 ~l~~~k~~QlQ~l~~~~eer~~i~e~ 617 (741)
T KOG4460|consen 592 LLCDQKKKQLQDLSYCREERKSLREM 617 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777766666543
No 137
>KOG4727|consensus
Probab=29.57 E-value=2.2e+02 Score=24.77 Aligned_cols=25 Identities=4% Similarity=-0.076 Sum_probs=15.9
Q ss_pred hhHHHHHhhhhccchhh---hhcccccc
Q psy583 88 LKKTLANMMSDSEKLYN---VYAEKRNI 112 (293)
Q Consensus 88 ~~~~l~~~ce~c~~l~c---~~~eHk~H 112 (293)
.+..--|||.-|+-++= .+-+|=+|
T Consensus 70 ~sq~~GyyCdVCdcvvKDSinflDHiNg 97 (193)
T KOG4727|consen 70 RSQKGGYYCDVCDCVVKDSINFLDHING 97 (193)
T ss_pred ccccCceeeeecceeehhhHHHHHHhcc
Confidence 34555799999986644 34555554
No 138
>KOG2607|consensus
Probab=28.81 E-value=6e+02 Score=25.40 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=42.0
Q ss_pred ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 109 KRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVK 173 (293)
Q Consensus 109 Hk~H~~~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe 173 (293)
.++|+ ++.++++-.-....--+-.+++.+..++.....+.++...+...+...+.+-...+.
T Consensus 103 Ekd~~---YlaEaAQIlvrnvnYEIP~LkKQiaK~qQq~tE~~RKe~d~~k~aa~~r~qfe~~c~ 164 (505)
T KOG2607|consen 103 EKDHI---YLAEAAQILVRNVNYEIPYLKKQIAKVQQQMTELDRKEADIKKSAALSRTQFEDACR 164 (505)
T ss_pred hcCce---eHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 45665 478888877666666666777777777777777777777777776655554444443
No 139
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=28.43 E-value=3.9e+02 Score=24.65 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=46.4
Q ss_pred hhhhHHHHHhhhhccchhhhhcccccccc-c-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 86 DDLKKTLANMMSDSEKLYNVYAEKRNINS-G-LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKK 161 (293)
Q Consensus 86 ~~~~~~l~~~ce~c~~l~c~~~eHk~H~~-~-~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~ 161 (293)
.|++=-..-+|+.=-++-|..++...-|+ . ...++ +...+.+|+..++.++++..+..-++.-++....-+-.++
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dE-a~~L~~~L~~kl~eLqkk~~Ea~lAVtPLKak~AslV~kc 88 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDE-ATRLQDELQGKLEELQKKQHEANLAVTPLKAKLASLVQKC 88 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHhhccchHHHHHHHHHHHH
Confidence 56677777888988899886554432221 1 12233 5566777777777777777666666666655554444443
No 140
>PF14644 DUF4456: Domain of unknown function (DUF4456)
Probab=28.23 E-value=3.6e+02 Score=23.73 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy583 205 KVTLEQLSRLTDHCIEF 221 (293)
Q Consensus 205 ~~~le~~L~~L~~~i~f 221 (293)
...++.....+...-+.
T Consensus 94 ~~~f~~~~~~~~~~k~~ 110 (208)
T PF14644_consen 94 QEEFEQQQKQWEQQKDQ 110 (208)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444443333
No 141
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=27.43 E-value=5.6e+02 Score=24.58 Aligned_cols=74 Identities=19% Similarity=0.164 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 150 IDDRQNLISEKKKRLTQEITEMVKLLTNAINLRG-KQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVN 223 (293)
Q Consensus 150 l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere-~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fve 223 (293)
+.+..+.+..-+..+..+|+....-.--+++.++ +..+.++=++-..+...+.++++.++..+-.=...|....
T Consensus 255 ~~~DldTIsrLV~RL~deIE~~~~~v~fave~~~d~~~vk~vv~el~k~~~~f~~qleELeehv~lC~~tInrAR 329 (336)
T PF05055_consen 255 LIKDLDTISRLVDRLEDEIEHMKALVDFAVERGEDEEAVKEVVKELKKNVESFTEQLEELEEHVYLCFKTINRAR 329 (336)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666777777777777776665555566655 3345555555666677777777777776655444444443
No 142
>PF12548 DUF3740: Sulfatase protein; InterPro: IPR024609 This uncharacterised domain is found in the C-terminal region of extracellular sulphatase proteins.
Probab=27.09 E-value=90 Score=26.28 Aligned_cols=62 Identities=11% Similarity=-0.023 Sum_probs=41.8
Q ss_pred chhhhhHHHHHhhhhccchhhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 84 NLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDD 152 (293)
Q Consensus 84 ~~~~~~~~l~~~ce~c~~l~c~~~eHk~H~~~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e 152 (293)
.-+.++.++.=|...=++|.|.-. ++.-..||..+|..|...+..++.+++.+++....|..
T Consensus 73 ~~~~i~~t~rC~Il~n~tVnCs~~-------iY~d~~aWk~hr~~ID~eIe~Lq~Ki~~LKeiR~hLk~ 134 (145)
T PF12548_consen 73 VPNSIQVTHRCFILPNDTVNCSNV-------IYQDPKAWKDHRLHIDHEIETLQDKIKNLKEIRGHLKK 134 (145)
T ss_pred ccccccceeeEEEecCCcEeccHh-------hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333344466666211 22346799999999999999999999999888776654
No 143
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=26.94 E-value=6.7e+02 Score=25.34 Aligned_cols=57 Identities=12% Similarity=0.125 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy583 171 MVKLLTNAINLRGKQLAYKLNEICDS---KQKTLNEKKVTLEQLSRLTDHCIEFVNNGLN 227 (293)
Q Consensus 171 ~fe~Li~~Leere~~LL~eLe~~~~~---kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk 227 (293)
.++.|..-|+++-..+-.+++..+.. ....|..++..+...-..+..-...+-.+|+
T Consensus 137 ~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALk 196 (475)
T PRK10361 137 SLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALK 196 (475)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 44445555555555555555555533 3345666666666555566655556666665
No 144
>COG1561 Uncharacterized stress-induced protein [Function unknown]
Probab=26.35 E-value=5.5e+02 Score=24.18 Aligned_cols=83 Identities=14% Similarity=0.133 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy583 149 VIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNT 228 (293)
Q Consensus 149 ~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk~ 228 (293)
.+..+...+......++..+-.....+..-+..+-..+..+++...=...-.+-.++-.+...+..|.+=+..+...++.
T Consensus 158 ~l~~~L~~ie~~v~~v~~~~P~~~~~~~~~l~~ri~~~~~~~d~~rl~qE~al~a~K~DI~EEldRL~sHv~~~~~iL~~ 237 (290)
T COG1561 158 DLLQRLDAIEELVEKVESLMPEILEWYRERLVARLNEAQDQLDEDRLEQEVALLAQKADIAEELDRLKSHVKEFRNILEK 237 (290)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555555544444454555555555555555555555566667777777777788887777777777755
Q ss_pred CCc
Q psy583 229 GSD 231 (293)
Q Consensus 229 gs~ 231 (293)
|.+
T Consensus 238 ~g~ 240 (290)
T COG1561 238 GGP 240 (290)
T ss_pred CCc
Confidence 544
No 145
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=26.16 E-value=6.6e+02 Score=24.98 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 119 DKWATETKHLIKGLLSEVSYKRVLLK 144 (293)
Q Consensus 119 ~eAa~~~K~~L~~~L~~lk~k~~~le 144 (293)
...+..+...++..+..++.++..++
T Consensus 164 RQl~~~~~~~~~~~i~~i~~ki~~~k 189 (424)
T PF03915_consen 164 RQLYSEFQSEVKESISSIREKIKKVK 189 (424)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444544444444433
No 146
>KOG4571|consensus
Probab=25.97 E-value=5.7e+02 Score=24.14 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 171 MVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFV 222 (293)
Q Consensus 171 ~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fv 222 (293)
+.-++.+--+.+.+.++.+++...+.. ..|.++..+++..++.|+.++..+
T Consensus 238 AAtRYRqKkRae~E~l~ge~~~Le~rN-~~LK~qa~~lerEI~ylKqli~e~ 288 (294)
T KOG4571|consen 238 AATRYRQKKRAEKEALLGELEGLEKRN-EELKDQASELEREIRYLKQLILEV 288 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777778888888887755544 467888888888887777766544
No 147
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=25.89 E-value=2.2e+02 Score=19.40 Aligned_cols=54 Identities=11% Similarity=0.131 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 128 LIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINL 181 (293)
Q Consensus 128 ~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Lee 181 (293)
.|...+..++.-...+...+..-...+..|...++.+...+...-..|..+++.
T Consensus 8 ~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 8 ELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555555555555555566666666666666666666666555543
No 148
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=25.51 E-value=8.5e+02 Score=26.02 Aligned_cols=125 Identities=13% Similarity=0.070 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Q psy583 119 DKWATETKHLIKGLLSEVSYKRVLLKSAMKV----IDDRQNLISEKKKRLTQEITEMVKLLTNAI--NLRGKQLAYKLNE 192 (293)
Q Consensus 119 ~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~----l~e~~~~L~e~~e~v~~eI~~~fe~Li~~L--eere~~LL~eLe~ 192 (293)
.++..+.--+|+.+|..=++.+.++..++.. .+-....++.+.+.-+.-+.++..+|..-| -++-..-.+-|+.
T Consensus 585 ~e~l~eqilKLKSLLSTKREQIaTLRTVLKANKqTAEvALanLKsKYE~EK~~v~etm~kLRnELK~LKEDAATFsSlRa 664 (717)
T PF09730_consen 585 KEELQEQILKLKSLLSTKREQIATLRTVLKANKQTAEVALANLKSKYENEKAMVSETMMKLRNELKALKEDAATFSSLRA 664 (717)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhccchhHHHHHHHHH
Q psy583 193 ICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSA 248 (293)
Q Consensus 193 ~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk~gs~~e~L~~kk~l~eRl~~L 248 (293)
....+-...-.|++.++.++....+=-.-+...|.-. ++.+-.++.||++|
T Consensus 665 mFa~RCdEYvtQldemqrqL~aAEdEKKTLNsLLRmA-----IQQKLaLTQRLEdl 715 (717)
T PF09730_consen 665 MFAARCDEYVTQLDEMQRQLAAAEDEKKTLNSLLRMA-----IQQKLALTQRLEDL 715 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHhc
No 149
>KOG3809|consensus
Probab=25.50 E-value=3.9e+02 Score=26.81 Aligned_cols=45 Identities=29% Similarity=0.353 Sum_probs=31.4
Q ss_pred hhhhhhhhhchHHHHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhhccchhh
Q psy583 43 QEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYN 104 (293)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~l~c 104 (293)
++-|.-|.-. -+++|++++++| .|++ +| +||-|+|.-||-+..+-
T Consensus 470 a~~~~sa~~~---~~~~lr~~~Q~L-----tkSa-~P--------Lgkl~D~i~eD~daMq~ 514 (583)
T KOG3809|consen 470 ADKIMSAERE---KMKQLREKLQDL-----TKSA-YP--------LGKLFDFINEDIDAMQK 514 (583)
T ss_pred hhhHHHHHHH---HHHHHHHHHHHH-----HHhh-cc--------HHHHHhhhhhhHHHHHH
Confidence 3445555522 578999999988 3333 22 89999999888888766
No 150
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.49 E-value=4.5e+02 Score=22.85 Aligned_cols=7 Identities=29% Similarity=0.302 Sum_probs=3.0
Q ss_pred HHHHHHH
Q psy583 58 KTLREKI 64 (293)
Q Consensus 58 ~~~~~~~ 64 (293)
-+|.+.+
T Consensus 36 i~L~e~L 42 (189)
T PF10211_consen 36 IQLQEWL 42 (189)
T ss_pred HHHHHHH
Confidence 3444444
No 151
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=25.14 E-value=6.7e+02 Score=24.70 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhh
Q psy583 2 AEMSALKAKLKEQNQRLITLNHEK 25 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~ 25 (293)
+++++|..||..=++||-.|.+--
T Consensus 62 ~~i~~lqkkL~~y~~~l~ele~~~ 85 (395)
T PF10267_consen 62 QTIAQLQKKLEQYHKRLKELEQGG 85 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCC
Confidence 457788888888888887775543
No 152
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=25.09 E-value=5.8e+02 Score=24.00 Aligned_cols=23 Identities=13% Similarity=0.225 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhccc
Q psy583 56 ALKTLREKIQDLESQLSTKEKDL 78 (293)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~ 78 (293)
..+.|+..|+..++-+..-.+.+
T Consensus 76 ~c~EL~~~I~egr~~~~~~E~~~ 98 (325)
T PF08317_consen 76 SCRELKKYISEGRQIFEEIEEET 98 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888877655554444
No 153
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=24.77 E-value=4.7e+02 Score=22.82 Aligned_cols=51 Identities=12% Similarity=0.111 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 129 IKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAI 179 (293)
Q Consensus 129 L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~L 179 (293)
|...+..+...+..++..+..+......+..+.......|.....+...+|
T Consensus 28 l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A~~Al 78 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQAELAL 78 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344444444333344444444444444444444433333
No 154
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=24.68 E-value=8.7e+02 Score=25.87 Aligned_cols=23 Identities=13% Similarity=0.339 Sum_probs=12.8
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhh
Q psy583 4 MSALKAKLKEQNQRLITLNHEKA 26 (293)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (293)
+.+|+.++.+=-+.+..-+||+|
T Consensus 333 ~~qL~~qVAsLQeev~sq~qEqa 355 (739)
T PF07111_consen 333 VKQLRGQVASLQEEVASQQQEQA 355 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555554
No 155
>PF14968 CCDC84: Coiled coil protein 84
Probab=24.51 E-value=1.2e+02 Score=29.28 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=29.5
Q ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 107 AEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKV 149 (293)
Q Consensus 107 ~eHk~H~~~~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~ 149 (293)
.-.+.|.|. ..|+..|+..|.....++..+..++..
T Consensus 10 ~~gr~H~Y~-------~~Hq~~L~~~L~rf~~Kl~d~R~~lk~ 45 (336)
T PF14968_consen 10 DQGRRHVYS-------PKHQKSLSAFLSRFRSKLSDARFFLKK 45 (336)
T ss_pred cccCCCccC-------HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 346778753 589999999999999999999888775
No 156
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=24.44 E-value=4.4e+02 Score=22.38 Aligned_cols=23 Identities=4% Similarity=0.138 Sum_probs=11.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH
Q psy583 117 QLDKWATETKHLIKGLLSEVSYK 139 (293)
Q Consensus 117 ~I~eAa~~~K~~L~~~L~~lk~k 139 (293)
.|.+....+-..|+.....+.+.
T Consensus 31 aik~~sd~~~~~l~~~~~~l~ee 53 (155)
T PF07464_consen 31 AIKEQSDSVAQQLQNVSSSLQEE 53 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555544
No 157
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=24.23 E-value=7.3e+02 Score=24.85 Aligned_cols=33 Identities=6% Similarity=-0.021 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 175 LTNAINLRGKQLAYKLNEICDSKQKTLNEKKVT 207 (293)
Q Consensus 175 Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~ 207 (293)
|...++..-..+-+.++.......+......++
T Consensus 133 Ll~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~ 165 (448)
T COG1322 133 LLKPLREVLEKFREQLEQRIHESAEERSTLLEE 165 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444333333333333
No 158
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=24.19 E-value=7.2e+02 Score=24.75 Aligned_cols=29 Identities=21% Similarity=0.066 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 118 LDKWATETKHLIKGLLSEVSYKRVLLKSA 146 (293)
Q Consensus 118 I~eAa~~~K~~L~~~L~~lk~k~~~le~~ 146 (293)
+...+..+...+...+..++.++..++.+
T Consensus 167 lRQ~~~~~~~~~~~sm~~i~~k~~~~k~~ 195 (426)
T smart00806 167 LRQTHNSFFTEIKESIKDILEKIDKFKSS 195 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666667777777777776666654
No 159
>smart00338 BRLZ basic region leucin zipper.
Probab=24.11 E-value=2.6e+02 Score=19.56 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 120 KWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRL 164 (293)
Q Consensus 120 eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v 164 (293)
.|+..++..=...+..+..++..+......+......+......+
T Consensus 15 ~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~l 59 (65)
T smart00338 15 EAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKL 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777766667777676666666665555555555544444333
No 160
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=23.99 E-value=6.3e+02 Score=24.03 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=14.7
Q ss_pred CchhhhhhhhhhhchHHHHHHHHHHHHHHHHh
Q psy583 39 HADEQEQTNLLISKKQLALKTLREKIQDLESQ 70 (293)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (293)
+++|....|+.- -+|...+..++++
T Consensus 11 ~~~~~~~S~~t~-------~~l~~~~~sL~qe 35 (310)
T PF09755_consen 11 GAGMTSSSSATR-------EQLRKRIESLQQE 35 (310)
T ss_pred CCCCCCCCCCch-------HHHHHHHHHHHHH
Confidence 345555666643 5666666666654
No 161
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=23.87 E-value=3.6e+02 Score=21.18 Aligned_cols=89 Identities=11% Similarity=0.129 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 136 VSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLT 215 (293)
Q Consensus 136 lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L 215 (293)
+..+...+......+......+...-..+...+. .|+.++.--......-+...+.....+ ......+..+...+..|
T Consensus 16 l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~-~f~~flken~~k~~rA~k~a~~e~k~~-~~k~~ei~~l~~~l~~l 93 (126)
T PF13863_consen 16 LDTKREEIERREEQLKQREEELEKKEQELEEDVI-KFDKFLKENEAKRERAEKRAEEEKKKK-EEKEAEIKKLKAELEEL 93 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555555433333222 333333322333333333333222222 22333344444444455
Q ss_pred HHHHHHHHhhh
Q psy583 216 DHCIEFVNNGL 226 (293)
Q Consensus 216 ~~~i~fveq~L 226 (293)
..-+..++..+
T Consensus 94 ~~~~~k~e~~l 104 (126)
T PF13863_consen 94 KSEISKLEEKL 104 (126)
T ss_pred HHHHHHHHHHH
Confidence 44444444443
No 162
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=23.85 E-value=81 Score=18.21 Aligned_cols=17 Identities=24% Similarity=0.561 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHhhhhh
Q psy583 2 AEMSALKAKLKEQNQRL 18 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ 18 (293)
.||.+||+++++--++|
T Consensus 1 ~E~~rlr~rI~dLer~L 17 (23)
T PF04508_consen 1 REMNRLRNRISDLERQL 17 (23)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 48999999998876655
No 163
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=23.57 E-value=6.3e+02 Score=23.83 Aligned_cols=9 Identities=11% Similarity=0.346 Sum_probs=0.0
Q ss_pred hhhhccchh
Q psy583 95 MMSDSEKLY 103 (293)
Q Consensus 95 ~ce~c~~l~ 103 (293)
+|.+|-...
T Consensus 2 lC~eC~~~l 10 (314)
T PF04111_consen 2 LCQECTDLL 10 (314)
T ss_dssp ---------
T ss_pred CcHHHHHHH
Confidence 588886654
No 164
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=23.55 E-value=7.9e+02 Score=24.96 Aligned_cols=86 Identities=12% Similarity=0.107 Sum_probs=58.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLT---NAINLRGKQLAYKLNE 192 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li---~~Leere~~LL~eLe~ 192 (293)
+.+.++++-.-..+.--+-.++..+..++..+.....+..++.......+.+....|..|= .-++.+-.+++..|-.
T Consensus 109 ~~L~E~a~~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk~~e~~~~~~~~~~~~~~~c~~lGI~G~nir~ELl~l~~~LP~ 188 (507)
T PF05600_consen 109 LYLAEAAQILVRNVNYEIPALKKQIAKCQQQLEDLDKKEEELQRSAAEARERYKKACKQLGIKGENIREELLELVKELPS 188 (507)
T ss_pred chHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCccchhHHHHHHHHHhhHH
Confidence 4688888887777777777777777788888888888888888888877777777776542 2244444445555555
Q ss_pred HHHHHHHHH
Q psy583 193 ICDSKQKTL 201 (293)
Q Consensus 193 ~~~~kl~~L 201 (293)
........+
T Consensus 189 ~~~~i~~~i 197 (507)
T PF05600_consen 189 LFDEIVEAI 197 (507)
T ss_pred HHHHHHHHH
Confidence 554444444
No 165
>PF10079 DUF2317: Uncharacterized protein conserved in bacteria (DUF2317); InterPro: IPR011199 Members of this protein family include BshC, which is an enzyme required for bacillithiol biosynthesis and described as a cysteine-adding enzyme. Bacillithiol is a low-molecular-weight thiol, an analog of glutathione and mycothiol, and is found largely in the Firmicutes.
Probab=23.54 E-value=7.8e+02 Score=25.20 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy583 164 LTQEITEMVKLLTNAINL 181 (293)
Q Consensus 164 v~~eI~~~fe~Li~~Lee 181 (293)
.+..|...|+.|...+..
T Consensus 431 ~~~~l~~~~~~l~~~~~~ 448 (542)
T PF10079_consen 431 EKEQLEAQFEPLKEKAAK 448 (542)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444333
No 166
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=23.38 E-value=7.6e+02 Score=24.73 Aligned_cols=36 Identities=11% Similarity=-0.003 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 172 VKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVT 207 (293)
Q Consensus 172 fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~ 207 (293)
|+..-+.+.+..+..+.+|..........+.++.+.
T Consensus 115 ~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~ 150 (448)
T COG1322 115 FEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQ 150 (448)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444445555555555555555555555544
No 167
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=23.13 E-value=3.3e+02 Score=20.49 Aligned_cols=25 Identities=16% Similarity=0.236 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 182 RGKQLAYKLNEICDSKQKTLNEKKV 206 (293)
Q Consensus 182 re~~LL~eLe~~~~~kl~~L~~q~~ 206 (293)
.+..++.++......-.....+.+.
T Consensus 58 ~~~~~~~~I~~~~~~~~~l~deKv~ 82 (105)
T PF12998_consen 58 KRRELLKEIQEEYERALELSDEKVA 82 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444544444444433333333
No 168
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=23.09 E-value=6.8e+02 Score=24.08 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 166 QEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTL 208 (293)
Q Consensus 166 ~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~l 208 (293)
.++...+++++..-.+.+..|+...-.+-..|...|..+.+.+
T Consensus 161 ~~~~~qlE~~v~~K~~~E~~L~~KF~~vLNeKK~KIR~lq~~L 203 (342)
T PF06632_consen 161 NKLLKQLEKFVNAKEEHEEDLYAKFVLVLNEKKAKIRELQRLL 203 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4555677777777788888888776555555555544444443
No 169
>KOG0774|consensus
Probab=22.98 E-value=6.3e+02 Score=23.63 Aligned_cols=88 Identities=6% Similarity=0.023 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 124 ETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNE 203 (293)
Q Consensus 124 ~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~ 203 (293)
+||.+|-..-......++.++.+-.....-+..+-.....++--....|++++..+.++-...-.+|+...-.+.-.|..
T Consensus 104 dYR~kL~qiR~iy~~ElekyeqaCneftthV~nlL~eQsr~RPi~~ke~e~m~~~i~~kF~~iq~~lkqstce~vmiLr~ 183 (334)
T KOG0774|consen 104 DYRAKLLQIRQIYHNELEKYEQACNEFTTHVMNLLREQSRTRPIMPKEIERMVQIISKKFSHIQMQLKQSTCEAVMILRS 183 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666665555555555555555544433333222222222222234666666777666666666666666665555555
Q ss_pred HHHHHHHH
Q psy583 204 KKVTLEQL 211 (293)
Q Consensus 204 q~~~le~~ 211 (293)
........
T Consensus 184 r~ldarRK 191 (334)
T KOG0774|consen 184 RFLDARRK 191 (334)
T ss_pred HHHHHHHh
Confidence 54444433
No 170
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=22.94 E-value=9.6e+02 Score=25.74 Aligned_cols=39 Identities=5% Similarity=-0.001 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 171 MVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLE 209 (293)
Q Consensus 171 ~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le 209 (293)
.++...+.|+++++.++.++.......+.....+.+.+-
T Consensus 552 ~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i 590 (782)
T PRK00409 552 ELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEII 590 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555544444444433333
No 171
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=22.61 E-value=4.6e+02 Score=23.24 Aligned_cols=21 Identities=10% Similarity=0.052 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy583 166 QEITEMVKLLTNAINLRGKQL 186 (293)
Q Consensus 166 ~eI~~~fe~Li~~Leere~~L 186 (293)
.-|...|+.|...-+.+-..+
T Consensus 131 ~lvk~e~EqLL~YK~~ql~~~ 151 (195)
T PF12761_consen 131 ALVKREFEQLLDYKERQLREL 151 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 455667777666655554444
No 172
>KOG0963|consensus
Probab=22.21 E-value=9.2e+02 Score=25.24 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 177 NAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVN 223 (293)
Q Consensus 177 ~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fve 223 (293)
.+++......-+.+......++..|.+....+..++..+...+..++
T Consensus 163 ~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq 209 (629)
T KOG0963|consen 163 IFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLEELEKKISSLQ 209 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444444444444444444443
No 173
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=22.14 E-value=4.5e+02 Score=21.63 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy583 167 EITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLN 227 (293)
Q Consensus 167 eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk 227 (293)
+++..+..++..+.++.+.+-.-.+...+ ...+..++..+...+..+-..++.+...|-
T Consensus 60 evd~~~~~l~~~~~erqk~~~k~ae~L~k--v~els~~L~~~~~lL~~~v~~ie~LN~~LP 118 (131)
T PF10158_consen 60 EVDQEIAKLLQQMVERQKRFAKFAEQLEK--VNELSQQLSRCQSLLNQTVPSIETLNEILP 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 33445666666666666666555553332 667777888887777777777777777663
No 174
>KOG1656|consensus
Probab=22.04 E-value=5.8e+02 Score=22.89 Aligned_cols=12 Identities=25% Similarity=0.315 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q psy583 198 QKTLNEKKVTLE 209 (293)
Q Consensus 198 l~~L~~q~~~le 209 (293)
+..+..|+..++
T Consensus 84 l~tie~Qr~alE 95 (221)
T KOG1656|consen 84 LSTIEFQREALE 95 (221)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 175
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=21.96 E-value=4.9e+02 Score=21.98 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=8.2
Q ss_pred hhHHHHHhhhhccch
Q psy583 88 LKKTLANMMSDSEKL 102 (293)
Q Consensus 88 ~~~~l~~~ce~c~~l 102 (293)
++.||..|...|..+
T Consensus 91 ~~e~L~~y~~~~~s~ 105 (218)
T cd07596 91 LLEPLKEYLRYCQAV 105 (218)
T ss_pred HHhHHHHHHHHHHHH
Confidence 555666665554444
No 176
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=21.89 E-value=86 Score=21.88 Aligned_cols=15 Identities=60% Similarity=0.592 Sum_probs=12.6
Q ss_pred hhhhhhhhhhhhhhh
Q psy583 17 RLITLNHEKAKLEAR 31 (293)
Q Consensus 17 ~~~~~~~~~~~~~~~ 31 (293)
-|-.|..|-||+|+|
T Consensus 39 al~~Lk~EIaklE~R 53 (53)
T PF08898_consen 39 ALEKLKAEIAKLEAR 53 (53)
T ss_pred HHHHHHHHHHHHhcC
Confidence 456789999999987
No 177
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=21.59 E-value=6.1e+02 Score=22.93 Aligned_cols=49 Identities=33% Similarity=0.418 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhhccchhh
Q psy583 56 ALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYN 104 (293)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~l~c 104 (293)
++..|.--+.++..++......+..+........+.+..+=.+-+.+..
T Consensus 18 ~~~~l~~~~e~~~~~L~~~~~~~~~~~~~~~~~e~~l~~L~~d~~~L~~ 66 (264)
T PF06008_consen 18 APYKLLSSIEDLTNQLRSYRSKLNPQKQQLDPLEKELESLEQDVENLQE 66 (264)
T ss_pred hHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555565655555666666666666666666643
No 178
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=21.49 E-value=7.5e+02 Score=23.94 Aligned_cols=7 Identities=29% Similarity=0.510 Sum_probs=4.0
Q ss_pred HHHHHHH
Q psy583 56 ALKTLRE 62 (293)
Q Consensus 56 ~~~~~~~ 62 (293)
.|+.|=+
T Consensus 105 VLd~Lad 111 (359)
T PF10498_consen 105 VLDQLAD 111 (359)
T ss_pred HHHHHHH
Confidence 5555555
No 179
>KOG3850|consensus
Probab=21.38 E-value=8e+02 Score=24.24 Aligned_cols=20 Identities=25% Similarity=0.496 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHhhhhhhhhh
Q psy583 3 EMSALKAKLKEQNQRLITLN 22 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~ 22 (293)
++++|..||-.=-+||--+.
T Consensus 99 tiaqlqkkL~~y~~rLkeie 118 (455)
T KOG3850|consen 99 TIAQLQKKLEQYHRRLKEIE 118 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45667777766666665544
No 180
>KOG4674|consensus
Probab=21.36 E-value=1.4e+03 Score=27.20 Aligned_cols=70 Identities=10% Similarity=0.081 Sum_probs=32.5
Q ss_pred hhhHHHHHhhhhccchhhhhcccccccc-ccchHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 87 DLKKTLANMMSDSEKLYNVYAEKRNINS-GLQLDKWATET---KHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKK 162 (293)
Q Consensus 87 ~~~~~l~~~ce~c~~l~c~~~eHk~H~~-~~~I~eAa~~~---K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e 162 (293)
.+-+.|..+|+.-..+ |+.|.. +.-|..-.... ...++..+..++.+...+...+..+......++....
T Consensus 196 wL~~eL~~~~ekll~~------~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~ 269 (1822)
T KOG4674|consen 196 WLSRELSKVNEKLLSL------RREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAE 269 (1822)
T ss_pred HHHHHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4667788888776665 344421 11222211111 1244445555555555555544444444444444433
No 181
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=20.97 E-value=3.7e+02 Score=20.15 Aligned_cols=68 Identities=6% Similarity=-0.026 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 121 WATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAY 188 (293)
Q Consensus 121 Aa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~ 188 (293)
.+..+...|...+...+..+..+..-+......+..-......+..-+...+..........+...+.
T Consensus 49 ~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~a~~~~k~~e~L~e~~~~~~~~~~~r~Eq~~lD 116 (123)
T PF02050_consen 49 NYQRYISALEQAIQQQQQELERLEQEVEQAREELQEARRERKKLEKLKERRREEYQQEEERREQKELD 116 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555556666666555555555554444444444444444444444444444444444444444443
No 182
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=20.77 E-value=3.1e+02 Score=19.26 Aligned_cols=34 Identities=15% Similarity=0.331 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 135 EVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEI 168 (293)
Q Consensus 135 ~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI 168 (293)
.+..++..+...+..++....+|++..+.+.+.|
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555544444433
No 183
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=20.60 E-value=1.1e+03 Score=25.58 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=11.1
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhh
Q psy583 4 MSALKAKLKEQNQRLITLNHEKAKL 28 (293)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (293)
+..++..+.+.++.+-.+..+...+
T Consensus 679 ~~~l~~~~~~l~~~l~~~~~~~~~~ 703 (1179)
T TIGR02168 679 IEELEEKIEELEEKIAELEKALAEL 703 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 184
>PRK10869 recombination and repair protein; Provisional
Probab=20.51 E-value=9.2e+02 Score=24.61 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy583 4 MSALKAKLKEQNQRLITLNHEKAKLEA 30 (293)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (293)
+..+...-++..+|+=+|.-+...|++
T Consensus 173 l~~l~~~~~~~~~~~d~l~fql~Ei~~ 199 (553)
T PRK10869 173 LAQHQQQSQERAARKQLLQYQLKELNE 199 (553)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 344444555666677777776666664
No 185
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=20.14 E-value=5.6e+02 Score=21.96 Aligned_cols=77 Identities=6% Similarity=-0.026 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 122 ATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQ 198 (293)
Q Consensus 122 a~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl 198 (293)
|......|...-..+...+...+...........+.+......+.+-............+.....+.+.+.+.....
T Consensus 53 ~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~ 129 (181)
T PRK13454 53 LPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKA 129 (181)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444444444444444444444444444444433333
No 186
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.12 E-value=6.4e+02 Score=22.62 Aligned_cols=21 Identities=19% Similarity=0.411 Sum_probs=11.6
Q ss_pred chHHHHHHHHHHHHHHHHhhh
Q psy583 52 KKQLALKTLREKIQDLESQLS 72 (293)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~ 72 (293)
+.+..|..+++....++.+++
T Consensus 24 ~~~~~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444456666666666655544
No 187
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.08 E-value=9.4e+02 Score=24.56 Aligned_cols=28 Identities=11% Similarity=-0.033 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCc
Q psy583 204 KKVTLEQLSRLTDHCIEFVNNGLNTGSD 231 (293)
Q Consensus 204 q~~~le~~L~~L~~~i~fveq~Lk~gs~ 231 (293)
-...++..+..+....+..+.....|++
T Consensus 162 a~~~Le~~L~~ie~~F~~f~~lt~~GD~ 189 (560)
T PF06160_consen 162 AIEELEKQLENIEEEFSEFEELTENGDY 189 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 3444555555555555555555555654
No 188
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=20.00 E-value=5.4e+02 Score=21.76 Aligned_cols=7 Identities=14% Similarity=-0.126 Sum_probs=2.5
Q ss_pred HHHHHHH
Q psy583 138 YKRVLLK 144 (293)
Q Consensus 138 ~k~~~le 144 (293)
.+..+++
T Consensus 95 ~el~~l~ 101 (191)
T PF04156_consen 95 EELDQLQ 101 (191)
T ss_pred HHHHHHH
Confidence 3333333
Done!