Query psy583
Match_columns 293
No_of_seqs 152 out of 702
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 19:00:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2csv_A Tripartite motif protei 98.2 1.9E-08 6.6E-13 73.4 -5.9 48 83-131 19-69 (72)
2 2d8u_A Ubiquitin ligase TRIM63 98.1 5E-09 1.7E-13 74.6 -9.5 48 83-131 9-61 (64)
3 2yvr_A Transcription intermedi 97.9 3.8E-07 1.3E-11 61.6 -3.6 40 83-123 7-50 (50)
4 2dja_A Midline-2; tripartite m 97.8 3.7E-08 1.3E-12 73.9 -10.8 53 84-137 20-77 (84)
5 2did_A Tripartite motif protei 97.8 5.3E-07 1.8E-11 61.7 -4.3 40 83-123 9-52 (53)
6 2yrg_A Tripartite motif-contai 97.5 1.4E-06 4.9E-11 61.1 -4.9 39 83-122 15-57 (59)
7 1fre_A Nuclear factor XNF7; zi 97.4 5E-06 1.7E-10 53.9 -2.8 35 83-118 4-42 (42)
8 3ddt_A E3 ubiquitin-protein li 97.2 7.3E-06 2.5E-10 54.8 -3.8 36 83-119 7-47 (48)
9 2egm_A Tripartite motif-contai 96.9 2.6E-05 8.8E-10 54.2 -3.9 35 83-118 19-57 (57)
10 2jun_A Midline-1; B-BOX, TRIM, 95.8 0.00035 1.2E-08 53.4 -3.7 36 83-119 60-100 (101)
11 1deq_A Fibrinogen (alpha chain 89.1 15 0.0005 34.4 16.2 65 166-231 105-169 (390)
12 3ghg_A Fibrinogen alpha chain; 89.0 9.7 0.00033 37.1 14.5 108 118-227 51-162 (562)
13 1l8d_A DNA double-strand break 88.2 1.6 5.4E-05 33.4 7.2 25 84-109 32-56 (112)
14 3ghg_A Fibrinogen alpha chain; 84.1 3.8 0.00013 39.9 8.8 116 128-248 68-188 (562)
15 1loi_A Cyclic 3',5'-AMP specif 83.9 0.35 1.2E-05 26.9 0.9 12 92-103 4-15 (26)
16 3ghg_B Fibrinogen beta chain; 70.9 76 0.0026 30.4 14.6 113 117-229 81-196 (461)
17 1i84_S Smooth muscle myosin he 70.2 0.91 3.1E-05 48.8 0.0 24 6-29 931-954 (1184)
18 3oja_B Anopheles plasmodium-re 68.4 86 0.0029 30.1 15.3 11 78-88 352-362 (597)
19 1m1j_B Fibrinogen beta chain; 68.4 86 0.0029 30.1 17.8 107 118-224 87-196 (464)
20 3s84_A Apolipoprotein A-IV; fo 60.6 90 0.0031 27.6 13.9 54 156-209 63-116 (273)
21 3ghg_C Fibrinogen gamma chain; 59.6 1.1E+02 0.0036 29.0 12.0 106 117-227 24-136 (411)
22 3ol1_A Vimentin; structural ge 59.0 60 0.002 25.0 15.7 46 116-161 12-57 (119)
23 1nfn_A Apolipoprotein E3; lipi 55.7 33 0.0011 28.8 7.1 23 162-184 131-153 (191)
24 1m1j_A Fibrinogen alpha subuni 52.1 1.7E+02 0.0057 28.1 16.9 128 118-248 52-189 (491)
25 1f5n_A Interferon-induced guan 51.7 1.9E+02 0.0064 28.5 15.0 51 150-200 506-556 (592)
26 2wy7_Q SBI, IGG-binding protei 51.5 42 0.0014 23.3 5.7 29 108-136 4-32 (80)
27 1kd8_B GABH BLL, GCN4 acid bas 50.3 16 0.00053 22.4 3.0 29 3-31 2-30 (36)
28 3r2p_A Apolipoprotein A-I; amp 50.2 1.1E+02 0.0036 25.2 13.6 58 154-211 106-163 (185)
29 3oja_B Anopheles plasmodium-re 49.7 1.8E+02 0.0062 27.8 16.4 14 174-187 509-522 (597)
30 2eqb_B RAB guanine nucleotide 49.5 81 0.0028 23.7 14.2 76 117-193 2-77 (97)
31 3nmd_A CGMP dependent protein 49.1 67 0.0023 22.8 6.7 11 109-119 6-16 (72)
32 4g2k_A General control protein 45.6 1.1E+02 0.0036 24.0 10.4 29 194-222 58-86 (125)
33 4abm_A Charged multivesicular 43.1 89 0.0031 22.4 10.2 34 146-179 7-40 (79)
34 3c3f_A Alpha/beta peptide with 42.7 28 0.00095 21.0 3.2 28 3-30 2-29 (34)
35 1uo4_A General control protein 42.2 25 0.00084 21.3 2.9 28 3-30 2-29 (34)
36 3vkg_A Dynein heavy chain, cyt 39.3 5.7E+02 0.019 30.7 15.9 31 87-117 1859-1894(3245)
37 3mq9_A Bone marrow stromal ant 36.4 2.6E+02 0.009 25.8 17.3 49 117-166 370-418 (471)
38 1jnm_A Proto-oncogene C-JUN; B 36.2 97 0.0033 20.8 6.2 43 120-162 11-53 (62)
39 2l7b_A Apolipoprotein E, APO-E 35.6 76 0.0026 28.6 6.6 86 118-209 101-186 (307)
40 3m48_A General control protein 35.4 33 0.0011 20.7 2.7 27 4-30 2-28 (33)
41 2a01_A Apolipoprotein A-I; fou 35.2 2.1E+02 0.0073 24.5 10.2 103 118-220 108-226 (243)
42 1kd8_A GABH AIV, GCN4 acid bas 34.9 36 0.0012 20.8 2.9 30 2-31 1-30 (36)
43 4dnd_A Syntaxin-10, SYN10; str 34.9 1.6E+02 0.0055 23.0 11.6 24 120-143 27-50 (130)
44 1f5n_A Interferon-induced guan 34.1 3.5E+02 0.012 26.6 13.6 34 92-127 433-466 (592)
45 1tm9_A GI3844938, hypothetical 33.9 15 0.00052 28.1 1.4 21 82-102 15-35 (137)
46 1jm7_B BARD1, BRCA1-associated 32.9 27 0.00092 26.3 2.7 40 56-101 75-114 (117)
47 2dfs_A Myosin-5A; myosin-V, in 32.6 4.7E+02 0.016 27.6 16.5 25 196-220 1023-1047(1080)
48 2wq1_A General control protein 32.1 46 0.0016 20.0 3.0 26 4-29 2-27 (33)
49 3c3g_A Alpha/beta peptide with 32.0 52 0.0018 19.7 3.2 27 4-30 2-28 (33)
50 1gs9_A Apolipoprotein E, APOE4 30.7 1.4E+02 0.0049 24.2 7.0 7 88-94 56-62 (165)
51 3r2p_A Apolipoprotein A-I; amp 30.5 2.2E+02 0.0075 23.2 10.7 15 125-139 83-97 (185)
52 2oxj_A Hybrid alpha/beta pepti 30.0 59 0.002 19.6 3.2 28 3-30 2-29 (34)
53 2zqm_A Prefoldin beta subunit 29.8 1.7E+02 0.0058 21.6 7.6 100 54-172 12-111 (117)
54 3pnt_A NAD+-glycohydrolase; gl 29.7 17 0.00058 31.3 1.1 24 268-291 170-193 (268)
55 1m1j_B Fibrinogen beta chain; 29.1 3.8E+02 0.013 25.5 14.4 41 84-129 69-109 (464)
56 1gs9_A Apolipoprotein E, APOE4 29.0 2.3E+02 0.0079 22.9 9.3 9 128-136 32-40 (165)
57 2r2v_A GCN4 leucine zipper; co 29.0 55 0.0019 19.8 3.0 27 3-29 2-28 (34)
58 3oja_A Leucine-rich immune mol 28.2 3.6E+02 0.012 25.0 17.4 36 192-227 438-473 (487)
59 3gn4_A Myosin-VI; unconvention 27.9 77 0.0026 25.7 4.7 53 122-174 61-115 (148)
60 1m1j_C Fibrinogen gamma chain; 27.2 3.9E+02 0.013 25.0 16.1 105 117-226 24-135 (409)
61 1t2k_D Cyclic-AMP-dependent tr 26.7 1.4E+02 0.0049 19.8 8.5 46 120-165 11-56 (61)
62 3vem_A Helicase protein MOM1; 26.6 2.2E+02 0.0076 21.9 11.2 43 165-207 59-101 (115)
63 1fxk_A Prefoldin; archaeal pro 26.3 1.4E+02 0.0047 21.8 5.7 39 56-98 9-47 (107)
64 1ci6_A Transcription factor AT 26.0 1.6E+02 0.0053 20.0 8.9 48 119-166 11-58 (63)
65 1ik9_A DNA repair protein XRCC 25.6 3.1E+02 0.01 23.2 15.5 48 167-214 157-204 (213)
66 2l9z_A PR domain zinc finger p 25.2 11 0.00039 23.6 -0.5 18 93-110 11-29 (39)
67 1deq_A Fibrinogen (alpha chain 25.2 4.2E+02 0.014 24.7 16.4 37 156-193 117-153 (390)
68 2k48_A Nucleoprotein; viral pr 24.1 82 0.0028 24.0 3.9 67 1-73 34-100 (107)
69 1j1j_A Translin; testis/brain 23.9 3.4E+02 0.012 23.2 10.0 23 109-131 6-28 (240)
70 2ic9_A Nucleocapsid protein; h 23.8 1.2E+02 0.0042 22.7 4.8 67 1-73 4-70 (96)
71 2ic6_A Nucleocapsid protein; h 22.7 1.3E+02 0.0044 21.6 4.6 67 1-73 4-70 (78)
72 2bni_A General control protein 22.6 84 0.0029 19.0 2.9 27 3-29 2-28 (34)
73 3ljm_A Coil Ser L9C; de novo d 22.4 1.2E+02 0.0041 17.3 4.2 24 120-143 4-27 (31)
74 3s84_A Apolipoprotein A-IV; fo 21.6 4.1E+02 0.014 23.2 17.7 24 158-181 87-110 (273)
75 2ocy_A RAB guanine nucleotide 21.6 3.2E+02 0.011 22.1 16.4 72 156-227 72-146 (154)
76 2j69_A Bacterial dynamin-like 21.6 6E+02 0.02 25.1 12.1 70 148-217 599-669 (695)
77 2p32_A Heat shock 70 kDa prote 20.6 1.8E+02 0.0062 21.9 5.5 15 126-140 20-34 (120)
No 1
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=98.16 E-value=1.9e-08 Score=73.39 Aligned_cols=48 Identities=10% Similarity=0.095 Sum_probs=41.7
Q ss_pred cchhhhhHHHHHhhhhccchhh---hhccccccccccchHHHHHHHHHHHHH
Q psy583 83 SNLDDLKKTLANMMSDSEKLYN---VYAEKRNINSGLQLDKWATETKHLIKG 131 (293)
Q Consensus 83 ~~~~~~~~~l~~~ce~c~~l~c---~~~eHk~H~~~~~I~eAa~~~K~~L~~ 131 (293)
..|..|+++|++||++|..++| ...+|++|. +.||++|++.+|..|+.
T Consensus 19 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~H~~H~-~~~l~ea~~~~k~~L~~ 69 (72)
T 2csv_A 19 RKCPVHGKTMELFCQTDQTCICYLCMFQEHKNHS-TVTVEEAKAEKETESGP 69 (72)
T ss_dssp CBCTTTCCBCCEEESSSCCEECHHHHHTTTSSSC-EEEHHHHHHHHSSCCCC
T ss_pred CcCcccCCceEEEeCCCCeEEccccCCCCCCCCC-EecHHHHHHHHHHHHHH
Confidence 4899999999999999999988 247899997 67999999998876654
No 2
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=98.13 E-value=5e-09 Score=74.61 Aligned_cols=48 Identities=6% Similarity=-0.086 Sum_probs=40.9
Q ss_pred cchhhh-hHHHHHhhhhccchhhh----hccccccccccchHHHHHHHHHHHHH
Q psy583 83 SNLDDL-KKTLANMMSDSEKLYNV----YAEKRNINSGLQLDKWATETKHLIKG 131 (293)
Q Consensus 83 ~~~~~~-~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~eAa~~~K~~L~~ 131 (293)
..|..| +++|++||++|..++|. ..+|++|. +.||++|++.+|.+|+.
T Consensus 9 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-~~~l~~a~~~~k~~L~~ 61 (64)
T 2d8u_A 9 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACE-VAPLQSVFQGQKTESGP 61 (64)
T ss_dssp CCCSSCTTCCCCSEESSSCCCCCSHHHHSSSTTSSC-EECTTTCCSSCCCCSSC
T ss_pred CcCcCcCCCccceEcCcCCceeCccccCCCcCCCCC-eeCHHHHHHHHHHHHHH
Confidence 389999 99999999999999993 35899997 67999999888776654
No 3
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=97.86 E-value=3.8e-07 Score=61.61 Aligned_cols=40 Identities=8% Similarity=-0.009 Sum_probs=32.6
Q ss_pred cchhhh-hHHHHHhhhhccchhh---hhccccccccccchHHHHH
Q psy583 83 SNLDDL-KKTLANMMSDSEKLYN---VYAEKRNINSGLQLDKWAT 123 (293)
Q Consensus 83 ~~~~~~-~~~l~~~ce~c~~l~c---~~~eHk~H~~~~~I~eAa~ 123 (293)
..|+.| +.+|++||++|..++| ...+|++|. +.||++|++
T Consensus 7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H~~H~-~~~l~ea~~ 50 (50)
T 2yvr_A 7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAHKDHQ-YQFLEDAVR 50 (50)
T ss_dssp CBCSSSTTCBCCEEETTTTEEECHHHHHTTTTTCC-EEETTC---
T ss_pred CcCcCCCCCCEEEEeCCCCEEEecccCCCcCCCCc-eecHHHHhC
Confidence 379999 9999999999999988 357899997 679998863
No 4
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=97.78 E-value=3.7e-08 Score=73.86 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=44.6
Q ss_pred chhhh-hHHHHHhhhhccchhhh----hccccccccccchHHHHHHHHHHHHHHHHHHH
Q psy583 84 NLDDL-KKTLANMMSDSEKLYNV----YAEKRNINSGLQLDKWATETKHLIKGLLSEVS 137 (293)
Q Consensus 84 ~~~~~-~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~eAa~~~K~~L~~~L~~lk 137 (293)
.|..| +.+|.+||++|..++|. ..+|++|. +.||++|++.+|..|+..+..++
T Consensus 20 ~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-~~~l~ea~~~~k~~L~~~l~~L~ 77 (84)
T 2dja_A 20 TCLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQ-VASLNDRFEKLKQTLEMNLTNLV 77 (84)
T ss_dssp CCSSCSSSCCCEEETTTTEEECHHHHHTSTTTTCC-BCCCCSSCCCCCCCCCCCCCCCC
T ss_pred cCcCcCCccccEEcCCCCceEcccCcCCCCCCCCC-ccCHHHHHHHHHHHHHHHHHHHH
Confidence 89999 69999999999999883 37899997 67999999998887776655443
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=97.76 E-value=5.3e-07 Score=61.69 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=34.4
Q ss_pred cchhhhhHHHHHhhhhccchhhh----hccccccccccchHHHHH
Q psy583 83 SNLDDLKKTLANMMSDSEKLYNV----YAEKRNINSGLQLDKWAT 123 (293)
Q Consensus 83 ~~~~~~~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~eAa~ 123 (293)
..|..|+++|++||++|..++|. ..+|++|. +.||++|++
T Consensus 9 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-~~~l~ea~~ 52 (53)
T 2did_A 9 SLCPQHHEALSLFCYEDQEAVCLICAISHTHRAHT-VVPLSGPSS 52 (53)
T ss_dssp CBCTTTCCBCCEEESSSCSEECHHHHTSSTTTTSC-EEECCCTTT
T ss_pred CcChhhCCeeeEEeCCCCeEEeccccCCCCCCCCc-EeeHHHHhc
Confidence 48999999999999999999883 37899997 679988763
No 6
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=1.4e-06 Score=61.07 Aligned_cols=39 Identities=10% Similarity=0.020 Sum_probs=33.6
Q ss_pred cchhhhhHHHHHhhhhccchhhh----hccccccccccchHHHH
Q psy583 83 SNLDDLKKTLANMMSDSEKLYNV----YAEKRNINSGLQLDKWA 122 (293)
Q Consensus 83 ~~~~~~~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~eAa 122 (293)
..|..|+++|++||++|..++|. ..+|++|. +.||++|+
T Consensus 15 ~~C~~H~e~L~lfC~~d~~~iC~~C~~s~eH~~H~-~~~l~ea~ 57 (59)
T 2yrg_A 15 DHCARHGEKLLLFCQEDGKVICWLCERSQEHRGHH-TFPTSGPS 57 (59)
T ss_dssp SBCTTTCCBCCEEETTTCSEECHHHHTSTTTTTCC-EEECCSSC
T ss_pred ccChhhCceeeeecCCCCcEEecccCCCCcCCCCc-EeeHHHHh
Confidence 48999999999999999999883 37899997 67888875
No 7
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=97.44 E-value=5e-06 Score=53.89 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=29.1
Q ss_pred cchhhhhHHHHHhhhhccchhhh----hccccccccccch
Q psy583 83 SNLDDLKKTLANMMSDSEKLYNV----YAEKRNINSGLQL 118 (293)
Q Consensus 83 ~~~~~~~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I 118 (293)
..|..|+++|++||++|..++|. ..+|++|. +.||
T Consensus 4 ~~C~~H~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-~~~l 42 (42)
T 1fre_A 4 EKCSEHDERLKLYCKDDGTLSCVICRDSLKHASHN-FLPI 42 (42)
T ss_dssp CCCCSSCSSCCCCCCSSSSSSCCTTSSCSSCTTCC-CCCC
T ss_pred ccchhhCCeeeEEeCCCCeEEeccCCCCCCCCCCc-EecC
Confidence 47999999999999999999983 36799996 4553
No 8
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=97.25 E-value=7.3e-06 Score=54.77 Aligned_cols=36 Identities=6% Similarity=0.007 Sum_probs=30.3
Q ss_pred cchhhhh-HHHHHhhhhccchhh-h---hccccccccccchH
Q psy583 83 SNLDDLK-KTLANMMSDSEKLYN-V---YAEKRNINSGLQLD 119 (293)
Q Consensus 83 ~~~~~~~-~~l~~~ce~c~~l~c-~---~~eHk~H~~~~~I~ 119 (293)
..|..|+ ++|++||++|..++| . ..+|++|. ++||+
T Consensus 7 ~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H~~H~-~~~l~ 47 (48)
T 3ddt_A 7 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACE-VAPLQ 47 (48)
T ss_dssp CBCSSSTTSBCCEEETTTTEEECHHHHHHSTTTTSC-EEECC
T ss_pred CcCCCCCCccccEEcCCCCeeEcccccCCCcCCCCc-EEeCC
Confidence 4799999 999999999999998 2 45899997 56764
No 9
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.89 E-value=2.6e-05 Score=54.18 Aligned_cols=35 Identities=11% Similarity=0.037 Sum_probs=29.1
Q ss_pred cchhhhhHHHHHhhhhccchhhh----hccccccccccch
Q psy583 83 SNLDDLKKTLANMMSDSEKLYNV----YAEKRNINSGLQL 118 (293)
Q Consensus 83 ~~~~~~~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I 118 (293)
..|..|+++|++||++|..++|. ..+|++|. +.||
T Consensus 19 ~~C~~H~e~L~lfC~~d~~~iC~~C~~~~eH~~H~-~~~l 57 (57)
T 2egm_A 19 GICPKHQEALKLFCEVDEEAICVVCRESRSHKQHS-VVPL 57 (57)
T ss_dssp SBCTTTCCBCCEEETTTTEEECHHHHHSHHHHSSC-EECC
T ss_pred CcChhhCceeeEEcCCCCcEEecccCCCCCCCCCc-EecC
Confidence 37999999999999999999883 36899996 4453
No 10
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=95.80 E-value=0.00035 Score=53.44 Aligned_cols=36 Identities=8% Similarity=0.020 Sum_probs=30.0
Q ss_pred cchhhh-hHHHHHhhhhccchhhh----hccccccccccchH
Q psy583 83 SNLDDL-KKTLANMMSDSEKLYNV----YAEKRNINSGLQLD 119 (293)
Q Consensus 83 ~~~~~~-~~~l~~~ce~c~~l~c~----~~eHk~H~~~~~I~ 119 (293)
..|..| +.+|++||++|..++|. ..+|++|. +.+|+
T Consensus 60 ~~C~~H~~e~l~~fC~~~~~~iC~~C~~~~~H~~H~-~~~l~ 100 (101)
T 2jun_A 60 LMCLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQ-VAALS 100 (101)
T ss_dssp CCCSSCSSSCCCEEETTTTEEECHHHHHHTTTSSSC-BCCCC
T ss_pred CcCcCcCCCcceEECCCCCCccchhcCCCCCcCCCC-eecCC
Confidence 489999 69999999999999883 36899997 55764
No 11
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=89.08 E-value=15 Score=34.43 Aligned_cols=65 Identities=11% Similarity=0.020 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCc
Q psy583 166 QEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSD 231 (293)
Q Consensus 166 ~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk~gs~ 231 (293)
.+....|..+..-|+.+..-|-..|+..-. .+++|+..++.+...+..|+..|+.+....+...+
T Consensus 105 ~dndn~~~e~s~eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRLE~~Id~c~~~C~~sC~ 169 (390)
T 1deq_A 105 NNNDNTFKQINEDLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRLEVDIDIKIRSCKGSCS 169 (390)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 345567777778888888888888877777 88888888888888888999999888887765444
No 12
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.96 E-value=9.7 Score=37.14 Aligned_cols=108 Identities=7% Similarity=-0.000 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 118 LDKWATETKHLIKGLLSEVSYKRVLLKSAMKV----IDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEI 193 (293)
Q Consensus 118 I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~----l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~ 193 (293)
|.....+.-..|...|..++...+.+++.-.. +....+.|+.+..... +....+.++-.-|+++...|-.+|+..
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQ 129 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEK 129 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444555555566565555555433332 2333333433333333 555566666677888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy583 194 CDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLN 227 (293)
Q Consensus 194 ~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk 227 (293)
- ..+++|+..++.+...+..|+..|+.--+..+
T Consensus 130 l-snIrvLQsnLedq~~kIQRLEvDIdiqirsCK 162 (562)
T 3ghg_A 130 V-QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCR 162 (562)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7 77788888888888888888888877777765
No 13
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=88.21 E-value=1.6 Score=33.43 Aligned_cols=25 Identities=16% Similarity=0.306 Sum_probs=14.0
Q ss_pred chhhhhHHHHHhhhhccchhhhhccc
Q psy583 84 NLDDLKKTLANMMSDSEKLYNVYAEK 109 (293)
Q Consensus 84 ~~~~~~~~l~~~ce~c~~l~c~~~eH 109 (293)
....+.+.|.+|=.+ +.+|++|+..
T Consensus 32 ~i~~l~~~l~~l~~~-g~~CPvCgs~ 56 (112)
T 1l8d_A 32 KIGDLKTAIEELKKA-KGKCPVCGRE 56 (112)
T ss_dssp HHHHHHHHHHHHTTC-SEECTTTCCE
T ss_pred HHHHHHHHHHHhhcC-CCCCCCCCCc
Confidence 445566666666322 5555567654
No 14
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=84.14 E-value=3.8 Score=39.95 Aligned_cols=116 Identities=10% Similarity=0.084 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 128 LIKGLLSEVSYKRVLLKSAMK----VIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNE 203 (293)
Q Consensus 128 ~L~~~L~~lk~k~~~le~~l~----~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~ 203 (293)
+|+..+..++........+.. .++.+..... .-+.+..+|....++-|..|+.+-..-+..| +.-+ ..|.+
T Consensus 68 ELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~-dNdNtynE~S~ELRRrIqyLKekVdnQlsnI-rvLQ---snLed 142 (562)
T 3ghg_A 68 KLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSAN-NRDNTYNRVSEDLRSRIEVLKRKVIEKVQHI-QLLQ---KNVRA 142 (562)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHH-HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHH
T ss_pred HHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH---HHHHH
Confidence 344444444444444433333 3444444433 3344566666677777777776665555443 2233 34444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCcchh-ccchhHHHHHHHHH
Q psy583 204 KKVTLEQLSRLTDHCIEFVNNGLNTGSDMAL-LSSKAYKRVLLKSA 248 (293)
Q Consensus 204 q~~~le~~L~~L~~~i~fveq~Lk~gs~~e~-L~~kk~l~eRl~~L 248 (293)
|+..++..-..+.-.++.+.-........+| +.....+..+|..+
T Consensus 143 q~~kIQRLEvDIdiqirsCKgsCsr~~~~~vd~~sY~~~QKQLeQv 188 (562)
T 3ghg_A 143 QLVDMKRLEVDIDIKIRSCRGSCSRALAREVDLKDYEDQQKQLEQV 188 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTBSCCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccchheeecchHHHHHHHHHHHHH
Confidence 4444444445556667777777655444333 23445555666666
No 15
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=83.86 E-value=0.35 Score=26.95 Aligned_cols=12 Identities=8% Similarity=0.130 Sum_probs=10.2
Q ss_pred HHHhhhhccchh
Q psy583 92 LANMMSDSEKLY 103 (293)
Q Consensus 92 l~~~ce~c~~l~ 103 (293)
.+||||+|..+-
T Consensus 4 vdffcetcskpw 15 (26)
T 1loi_A 4 VDFFCETCSKPW 15 (26)
T ss_dssp HHHHHHTSSCTT
T ss_pred HHHHHHhcCCch
Confidence 579999999874
No 16
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=70.86 E-value=76 Score=30.43 Aligned_cols=113 Identities=9% Similarity=0.049 Sum_probs=73.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Q psy583 117 QLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITE---MVKLLTNAINLRGKQLAYKLNEI 193 (293)
Q Consensus 117 ~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~---~fe~Li~~Leere~~LL~eLe~~ 193 (293)
-|++..-++...+..-|..++..+..+...-+...+-+..|+......+..+.. ...+.-..|++...-..+-+...
T Consensus 81 glad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~ 160 (461)
T 3ghg_B 81 QLQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSN 160 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTH
T ss_pred hHHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 367777777777777777777777777776666666666666554444443332 22233344444444444445666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy583 194 CDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTG 229 (293)
Q Consensus 194 ~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk~g 229 (293)
....+..|...+..+...+..|+..+..........
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~~~~~~~~~~c~~p 196 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLESDVSAQMEYCRTP 196 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSB
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCC
Confidence 777788888888888888888888888777776433
No 17
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=70.16 E-value=0.91 Score=48.78 Aligned_cols=24 Identities=29% Similarity=0.552 Sum_probs=4.9
Q ss_pred HHHHHHHHhhhhhhhhhhhhhhhh
Q psy583 6 ALKAKLKEQNQRLITLNHEKAKLE 29 (293)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~ 29 (293)
.+..++.+...++-.+..++.+++
T Consensus 931 ele~elee~ee~l~el~~e~~~le 954 (1184)
T 1i84_S 931 EMEARIEEEEERSQQLQAEKKKMQ 954 (1184)
T ss_dssp HHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=68.44 E-value=86 Score=30.09 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=4.9
Q ss_pred ccCCccchhhh
Q psy583 78 LEVNNSNLDDL 88 (293)
Q Consensus 78 ~~~~~~~~~~~ 88 (293)
+..|.-+|+..
T Consensus 352 l~~N~~~~~~~ 362 (597)
T 3oja_B 352 LSHNDWDCNSL 362 (597)
T ss_dssp CCSSCEEHHHH
T ss_pred eeCCCCCChhH
Confidence 34444455543
No 19
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=68.43 E-value=86 Score=30.10 Aligned_cols=107 Identities=11% Similarity=0.144 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 118 LDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITE---MVKLLTNAINLRGKQLAYKLNEIC 194 (293)
Q Consensus 118 I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~---~fe~Li~~Leere~~LL~eLe~~~ 194 (293)
|.+-..++...+...|..++..+..+.........-+..|+......+.+|.. ....+...|++....+-+.+....
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 34444455555555555555555555544333333333333332222222222 222333334433333333333334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy583 195 DSKQKTLNEKKVTLEQLSRLTDHCIEFVNN 224 (293)
Q Consensus 195 ~~kl~~L~~q~~~le~~L~~L~~~i~fveq 224 (293)
...+..|...++.+...+..|+..+.....
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~ 196 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAIATQTD 196 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666665554433
No 20
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=60.64 E-value=90 Score=27.60 Aligned_cols=54 Identities=11% Similarity=0.241 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 156 LISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLE 209 (293)
Q Consensus 156 ~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le 209 (293)
.+..+.+.++..+....+.|...++..-++|-..|.-..+.-...+....+.+.
T Consensus 63 ~~~~~~eelr~kL~p~~~el~~~l~~~~eeLr~~L~p~~eelr~kl~~~veelk 116 (273)
T 3s84_A 63 QVNTQAEQLRRQLTPYAQRMERVLRENADSLQASLRPHADELKAKIDQNVEELK 116 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 445555666666666666666666555555555554433333334444333333
No 21
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=59.64 E-value=1.1e+02 Score=29.00 Aligned_cols=106 Identities=8% Similarity=-0.068 Sum_probs=56.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 117 QLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLT-------QEITEMVKLLTNAINLRGKQLAYK 189 (293)
Q Consensus 117 ~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~-------~eI~~~fe~Li~~Leere~~LL~e 189 (293)
-|++..-++...+..-|..++..+..+...-+...+-+..|+......+ ..+.+.-.+|+.-+.. ++.
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~-----~~~ 98 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMK-----YEA 98 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHH-----HHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHH-----HHH
Confidence 4777777777788888887777777777766666666666555432211 1111111112221111 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy583 190 LNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLN 227 (293)
Q Consensus 190 Le~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk 227 (293)
+-......+..|+.........+..|...+..++....
T Consensus 99 ~~~~~~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 99 SILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23333334445555555555666666666666666554
No 22
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=58.98 E-value=60 Score=25.03 Aligned_cols=46 Identities=9% Similarity=0.113 Sum_probs=26.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 116 LQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKK 161 (293)
Q Consensus 116 ~~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~ 161 (293)
..+...|..+-..|+..+..+......+.--+..+....+.++.+.
T Consensus 12 ~~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~Ky 57 (119)
T 3ol1_A 12 SRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKL 57 (119)
T ss_dssp -CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566677777777777777666655555544444444444444443
No 23
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=55.67 E-value=33 Score=28.80 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy583 162 KRLTQEITEMVKLLTNAINLRGK 184 (293)
Q Consensus 162 e~v~~eI~~~fe~Li~~Leere~ 184 (293)
+.++..+....+.|..-+..+-+
T Consensus 131 Eelr~~L~Py~eelr~kl~~~~e 153 (191)
T 1nfn_A 131 EELRVRLASHLRKLRKRLLRDAD 153 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHH
Confidence 34444444444444444433333
No 24
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=52.08 E-value=1.7e+02 Score=28.09 Aligned_cols=128 Identities=10% Similarity=0.042 Sum_probs=77.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 118 LDKWATETKHLIKGLLSEVSYKRVLLKSAMKV----IDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEI 193 (293)
Q Consensus 118 I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~----l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~ 193 (293)
+.....+.-..+...+..++..+..+...-.. +....+.|+.. .....+....|..+-.-|+.+..-|-..|+..
T Consensus 52 LqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~-~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~q 130 (491)
T 1m1j_A 52 MQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPG-LEGAQQLDENYGHVSTELRRRIVTLKQRVATQ 130 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH-HhhhccchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555555555555544332221 22222222222 22334556678888888888888888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhc------cchhHHHHHHHHH
Q psy583 194 CDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALL------SSKAYKRVLLKSA 248 (293)
Q Consensus 194 ~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk~gs~~e~L------~~kk~l~eRl~~L 248 (293)
- ..+..|+..++.+...+..|+..|+.--+..+..+ .-.+ .....+..+|..+
T Consensus 131 i-~~IrvLq~~l~~q~skIQRLE~dI~~q~~~Cr~pC-~r~~~y~VD~~~Ye~~QKqLeQv 189 (491)
T 1m1j_A 131 V-NRIKALQNSIQEQVVEMKRLEVDIDIKIRACKGSC-ARSFDYQVDKEGYDNIQKHLTQA 189 (491)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTB-SSCCCCCCCTTTTHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hhhHHhhhcHHHHHHHHHHHHHh
Confidence 7 88899999999999999999988887777775332 2221 2334455556665
No 25
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=51.65 E-value=1.9e+02 Score=28.52 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 150 IDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKT 200 (293)
Q Consensus 150 l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~ 200 (293)
+.++........+.-+..-.+....|..-++++++.++.+.+..-..|++.
T Consensus 506 l~~~~~~~~~~~~~~~~~~~e~~~ql~~kme~~~~~~~~e~~~~~~~~~~~ 556 (592)
T 1f5n_A 506 LHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQE 556 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344444455555555555555555555554443
No 26
>2wy7_Q SBI, IGG-binding protein; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Staphylococcus aureus} PDB: 2wy8_Q 2jvg_A 2jvh_A
Probab=51.52 E-value=42 Score=23.34 Aligned_cols=29 Identities=7% Similarity=0.107 Sum_probs=14.4
Q ss_pred cccccccccchHHHHHHHHHHHHHHHHHH
Q psy583 108 EKRNINSGLQLDKWATETKHLIKGLLSEV 136 (293)
Q Consensus 108 eHk~H~~~~~I~eAa~~~K~~L~~~L~~l 136 (293)
.|++|+..++|+.|.-.+-+.++..-..+
T Consensus 4 shhhhhhmvsiekaivrhdervKsqnpeI 32 (80)
T 2wy7_Q 4 SHHHHHHMVSIEKAIVRHDERVKSANDAI 32 (80)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHhhHHHHHHHhHHHHhhcCccc
Confidence 34444447799998888776665554433
No 27
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=50.33 E-value=16 Score=22.44 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q psy583 3 EMSALKAKLKEQNQRLITLNHEKAKLEAR 31 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (293)
-|.+|+.|+.|--++.-.|..|-+||..-
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 49999999999999999999999998653
No 28
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=50.17 E-value=1.1e+02 Score=25.22 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 154 QNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQL 211 (293)
Q Consensus 154 ~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~ 211 (293)
...+..+.+.++..+....+.|+.-++..-+.|-.+|.-..+.-...+...++.+...
T Consensus 106 ~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr~~l~~~~e~lk~~ 163 (185)
T 3r2p_A 106 QKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTH 163 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666777777777777766666666665555555555555555555555544
No 29
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=49.69 E-value=1.8e+02 Score=27.76 Aligned_cols=14 Identities=7% Similarity=-0.107 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q psy583 174 LLTNAINLRGKQLA 187 (293)
Q Consensus 174 ~Li~~Leere~~LL 187 (293)
+.+..+.++.+.+.
T Consensus 509 ~~~~~~~~~~~~~~ 522 (597)
T 3oja_B 509 KVFTHLKERQAFKL 522 (597)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhH
Confidence 33333333333333
No 30
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=49.48 E-value=81 Score=23.69 Aligned_cols=76 Identities=16% Similarity=0.099 Sum_probs=47.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 117 QLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEI 193 (293)
Q Consensus 117 ~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~ 193 (293)
|+...+..-|..|..+-..+...-..+......+.+ ....+..++.....|....+.|-..|=.+...++......
T Consensus 2 ~~~~~~e~lre~l~~le~~~~~~~~e~~~L~~~l~e-E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e 77 (97)
T 2eqb_B 2 PLGSNYNQLKEDYNTLKRELSDRDDEVKRLREDIAK-ENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKE 77 (97)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566666666655555555555555444433 3445667777788888888888888888888887766443
No 31
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.11 E-value=67 Score=22.82 Aligned_cols=11 Identities=0% Similarity=0.087 Sum_probs=0.0
Q ss_pred ccccccccchH
Q psy583 109 KRNINSGLQLD 119 (293)
Q Consensus 109 Hk~H~~~~~I~ 119 (293)
|++|+..-+|+
T Consensus 6 ~~~~~~~~~~~ 16 (72)
T 3nmd_A 6 HHHHHGMASIE 16 (72)
T ss_dssp -----------
T ss_pred cccccchhhcc
Confidence 33344333443
No 32
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=45.61 E-value=1.1e+02 Score=23.96 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 194 CDSKQKTLNEKKVTLEQLSRLTDHCIEFV 222 (293)
Q Consensus 194 ~~~kl~~L~~q~~~le~~L~~L~~~i~fv 222 (293)
....+..|..+..++..-.-.=+.+++|+
T Consensus 58 T~~aL~~L~~q~Tslr~~~LQNRraLD~L 86 (125)
T 4g2k_A 58 TAKSLELLLRVTTEERTFSLINRHAIDFL 86 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333334455554
No 33
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=43.11 E-value=89 Score=22.37 Aligned_cols=34 Identities=18% Similarity=0.305 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 146 AMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAI 179 (293)
Q Consensus 146 ~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~L 179 (293)
++..+++..+.+...-..+...|..........+
T Consensus 7 AI~~Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~ 40 (79)
T 4abm_A 7 AIQRLRDTEEMLSKKQEFLEKKIEQELTAAKKHG 40 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444333333333
No 34
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=42.68 E-value=28 Score=21.02 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy583 3 EMSALKAKLKEQNQRLITLNHEKAKLEA 30 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (293)
-|++|..|+.+--++--.|..|-+||..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ 29 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXK 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4999999999999999999999998854
No 35
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=42.20 E-value=25 Score=21.31 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy583 3 EMSALKAKLKEQNQRLITLNHEKAKLEA 30 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (293)
-|++|..|+.+--++.-.|..|-+||..
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~ 29 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3899999999999999999999999853
No 36
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=39.32 E-value=5.7e+02 Score=30.72 Aligned_cols=31 Identities=3% Similarity=-0.007 Sum_probs=15.6
Q ss_pred hhhHHHHHhhhhccchhh-----hhccccccccccc
Q psy583 87 DLKKTLANMMSDSEKLYN-----VYAEKRNINSGLQ 117 (293)
Q Consensus 87 ~~~~~l~~~ce~c~~l~c-----~~~eHk~H~~~~~ 117 (293)
++...+-.+|-.-..-+- ...+.+-|.|+.|
T Consensus 1859 ~~~~~~~~~~~~iH~sv~~~s~~~~~~~~R~~yvTP 1894 (3245)
T 3vkg_A 1859 SHRDAVVSSLVYIHQTIGEANIRLLKRQGRQNYVTP 1894 (3245)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCH
Confidence 455666655544333322 1445556666655
No 37
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=36.39 E-value=2.6e+02 Score=25.84 Aligned_cols=49 Identities=4% Similarity=0.028 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 117 QLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQ 166 (293)
Q Consensus 117 ~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~ 166 (293)
..++|+......+...|...+... +....-..+++.+.+.+.....++.
T Consensus 370 t~eeal~~~~~~i~~~l~~~~~~~-e~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 370 TVDEALKDAQTRITAARDGLRAVM-EARNVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhhHHHH-HhhhHHHHHHHHHHHHhhhHHHHHH
Confidence 457777777777777776665443 3333444444445554444444443
No 38
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=36.24 E-value=97 Score=20.81 Aligned_cols=43 Identities=14% Similarity=0.122 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 120 KWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKK 162 (293)
Q Consensus 120 eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e 162 (293)
.||..++..=...+..+..+...+..--..+......+.....
T Consensus 11 ~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 11 IAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777666666666666666666655555555555544443
No 39
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=35.57 E-value=76 Score=28.65 Aligned_cols=86 Identities=10% Similarity=0.151 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 118 LDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSK 197 (293)
Q Consensus 118 I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~k 197 (293)
+.+.....+..|..-+..++.++..+..-+ ...+....+.++..+....+.|..-++..-++|-.+|.-..+.-
T Consensus 101 l~~~~~~Lr~~L~~dlEelR~~L~Py~~el------~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~py~eeL 174 (307)
T 2l7b_A 101 LSKELQAAQARLGADMEDVCGRLVQYRGEV------QAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAVYQAGA 174 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHHHHH
Confidence 445555566666666666666544333221 22233344444555555555555555555544444444433333
Q ss_pred HHHHHHHHHHHH
Q psy583 198 QKTLNEKKVTLE 209 (293)
Q Consensus 198 l~~L~~q~~~le 209 (293)
...+....+.+.
T Consensus 175 r~kl~~~veelr 186 (307)
T 2l7b_A 175 REGAERGLSAIR 186 (307)
T ss_dssp SSHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 40
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=35.38 E-value=33 Score=20.66 Aligned_cols=27 Identities=33% Similarity=0.427 Sum_probs=22.0
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy583 4 MSALKAKLKEQNQRLITLNHEKAKLEA 30 (293)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (293)
|++|..|+.+--++=-.|..|-+||.+
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 889999999888888888888888754
No 41
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=35.19 E-value=2.1e+02 Score=24.45 Aligned_cols=103 Identities=10% Similarity=-0.006 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy583 118 LDKWATETKHLIKGLLSEVSYKRVLLKSAMKV-----IDDRQNLISEKKKRLTQEITEMVKLLTNAINLRGKQLAY---- 188 (293)
Q Consensus 118 I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~-----l~e~~~~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~---- 188 (293)
+..-++.+|..|......++.+...--..+.. ..+....+..+.+.++..+....+.+..-+..+-.+|-.
T Consensus 108 ~~~~~eelr~~L~P~~eel~~~~~~~~eel~~~L~p~~eelr~kl~~~veelk~~l~P~~ee~r~kl~~~~~el~~~l~p 187 (243)
T 2a01_A 108 WQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGA 187 (243)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCCSCCSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcch
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 189 -------KLNEICDSKQKTLNEKKVTLEQLSRLTDHCIE 220 (293)
Q Consensus 189 -------eLe~~~~~kl~~L~~q~~~le~~L~~L~~~i~ 220 (293)
++....+.-...|.-..+.+...+.-+...+.
T Consensus 188 ~~~e~~~kl~~~~e~lr~~l~p~~e~lk~~l~p~~e~~~ 226 (243)
T 2a01_A 188 RLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFK 226 (243)
T ss_dssp TTTSSSCCHHHHHHHHHHHHHHHHHHSSSCSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHH
No 42
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=34.93 E-value=36 Score=20.79 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhhhhhhhh
Q psy583 2 AEMSALKAKLKEQNQRLITLNHEKAKLEAR 31 (293)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 (293)
+.|.+|..|+.+--++--.|..|-+||..-
T Consensus 1 eRMnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 1 XEVKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 369999999999888888999999998753
No 43
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=34.89 E-value=1.6e+02 Score=22.98 Aligned_cols=24 Identities=0% Similarity=-0.273 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 120 KWATETKHLIKGLLSEVSYKRVLL 143 (293)
Q Consensus 120 eAa~~~K~~L~~~L~~lk~k~~~l 143 (293)
+-+-..+..++..+..++.....+
T Consensus 27 DPF~~Vk~EVq~sl~~l~~l~~~w 50 (130)
T 4dnd_A 27 DPFFVVRGEVQKAVNTARGLYQRW 50 (130)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 334444556666666665544433
No 44
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=34.14 E-value=3.5e+02 Score=26.56 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=15.7
Q ss_pred HHHhhhhccchhhhhccccccccccchHHHHHHHHH
Q psy583 92 LANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKH 127 (293)
Q Consensus 92 l~~~ce~c~~l~c~~~eHk~H~~~~~I~eAa~~~K~ 127 (293)
+.+|+..-+.+...+.....- ..-..++.+.+-.
T Consensus 433 ~~~~~~~~~~~~~~Y~~~~~k--g~~~~~vl~~fl~ 466 (592)
T 1f5n_A 433 YRLFVQKLQDLKKKYYEEPRK--GIQAEEILQTYLK 466 (592)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC--CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCC--cccHHHHHHHHHH
Confidence 445666666665544333210 1134455555543
No 45
>1tm9_A GI3844938, hypothetical protein Mg354; all alpha helical protein, structural genomics, PSI, protein structure initiative; NMR {Mycoplasma genitalium} SCOP: a.225.1.1
Probab=33.87 E-value=15 Score=28.08 Aligned_cols=21 Identities=19% Similarity=0.116 Sum_probs=16.9
Q ss_pred ccchhhhhHHHHHhhhhccch
Q psy583 82 NSNLDDLKKTLANMMSDSEKL 102 (293)
Q Consensus 82 ~~~~~~~~~~l~~~ce~c~~l 102 (293)
+-.|+-|+.-|+|.|..-+.-
T Consensus 15 ~~acssh~erldfics~resd 35 (137)
T 1tm9_A 15 NQACSTHQERLDFICSTRESD 35 (137)
T ss_dssp HTTCCSSTHHHHHHHHHTTSS
T ss_pred HHHHhhhHhhhhhheeccccc
Confidence 347999999999999876544
No 46
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.90 E-value=27 Score=26.34 Aligned_cols=40 Identities=18% Similarity=0.180 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhhccc
Q psy583 56 ALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEK 101 (293)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~ 101 (293)
.|.+|-+.+..+...+. .+....|..|+..+.+||++...
T Consensus 75 ~l~~l~~~~~~~~~~~~------~~~~~~c~~h~~~~~lfc~~~~k 114 (117)
T 1jm7_B 75 QLDSMIQLCSKLRNLLH------DNELSDLKEDKPRKSLFNDAGNK 114 (117)
T ss_dssp HHHHHHHHHHHHHHHHH------CCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHh------hccccccccccccCccceecccc
Confidence 67777777766653321 23345999999999999998764
No 47
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=32.55 E-value=4.7e+02 Score=27.64 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 196 SKQKTLNEKKVTLEQLSRLTDHCIE 220 (293)
Q Consensus 196 ~kl~~L~~q~~~le~~L~~L~~~i~ 220 (293)
.++..|.+....+++++.+|...+.
T Consensus 1023 ~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1023 QLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555566666666666666554333
No 48
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=32.13 E-value=46 Score=19.95 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.9
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy583 4 MSALKAKLKEQNQRLITLNHEKAKLE 29 (293)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (293)
|.+|..|+.|--++--.|..|-+||.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 89999999998888888888888874
No 49
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=32.04 E-value=52 Score=19.71 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy583 4 MSALKAKLKEQNQRLITLNHEKAKLEA 30 (293)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (293)
|++|..|+.+--++=-.|..|-|||.+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 899999999988887788888888753
No 50
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=30.72 E-value=1.4e+02 Score=24.21 Aligned_cols=7 Identities=14% Similarity=0.306 Sum_probs=3.5
Q ss_pred hhHHHHH
Q psy583 88 LKKTLAN 94 (293)
Q Consensus 88 ~~~~l~~ 94 (293)
+|+.|..
T Consensus 56 l~qel~~ 62 (165)
T 1gs9_A 56 VTQELRA 62 (165)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4455544
No 51
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=30.52 E-value=2.2e+02 Score=23.19 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy583 125 TKHLIKGLLSEVSYK 139 (293)
Q Consensus 125 ~K~~L~~~L~~lk~k 139 (293)
.+..|..-+..++.+
T Consensus 83 Lr~~l~kdlee~r~~ 97 (185)
T 3r2p_A 83 LRQEMSKDLEEVKAK 97 (185)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHH
Confidence 344444444444443
No 52
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=29.96 E-value=59 Score=19.62 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhhh
Q psy583 3 EMSALKAKLKEQNQRLITLNHEKAKLEA 30 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 30 (293)
-|++|..|+.+--++=-.|..|-+||.+
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4899999998876666677777777653
No 53
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=29.78 E-value=1.7e+02 Score=21.62 Aligned_cols=100 Identities=17% Similarity=0.216 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhhccchhhhhccccccccccchHHHHHHHHHHHHHHH
Q psy583 54 QLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLIKGLL 133 (293)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~c~~l~c~~~eHk~H~~~~~I~eAa~~~K~~L~~~L 133 (293)
.-.++.|...+..+..++......+. .+.+-...|..+-+|.. ++..++.-== ..++++| +
T Consensus 12 i~~~~~l~~~~~~l~~q~~~l~~~~~----e~~~~~~eL~~l~~d~~-vy~~iG~vfv---~~~~~ea-----------~ 72 (117)
T 2zqm_A 12 LGQLESYQQQLQLVVQQKQKVQLELT----EAKKALDEIESLPDDAV-VYKTVGTLIV---KTTKDKA-----------V 72 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTSCTTCC-EEEEETTEEE---EECHHHH-----------H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCCcH-hHHHhhHHHh---hccHHHH-----------H
Confidence 33556666666666666555444442 23334445555544321 2212221000 0133333 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 134 SEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMV 172 (293)
Q Consensus 134 ~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~f 172 (293)
..+..+.+.+...+..+......+..+....+..+.+.|
T Consensus 73 ~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~ 111 (117)
T 2zqm_A 73 AELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSAL 111 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 234444444455555555555555555555555555544
No 54
>3pnt_A NAD+-glycohydrolase; glycohydrolase, NAD+, virulence factor, hydrolase-hydrolase complex; 2.80A {Streptococcus pyogenes}
Probab=29.68 E-value=17 Score=31.35 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=18.1
Q ss_pred ecCCCCCccccccCCCCCccccCC
Q psy583 268 LKSPSSSTSSKSVTPPSSSVNIPL 291 (293)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~~~~ 291 (293)
++-.|--+...--||.+||.|||-
T Consensus 170 ~dklG~Irt~~GdTPGassLNIPG 193 (268)
T 3pnt_A 170 IDKLGYIRTASGDTPGANSLNIPG 193 (268)
T ss_dssp HHHHTCCBCCCTTSTTCCTTCCTT
T ss_pred hhhcceEeccCCCCCCccccCCCc
Confidence 344566666667899999999993
No 55
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=29.13 E-value=3.8e+02 Score=25.54 Aligned_cols=41 Identities=5% Similarity=-0.106 Sum_probs=18.8
Q ss_pred chhhhhHHHHHhhhhccchhhhhccccccccccchHHHHHHHHHHH
Q psy583 84 NLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATETKHLI 129 (293)
Q Consensus 84 ~~~~~~~~l~~~ce~c~~l~c~~~eHk~H~~~~~I~eAa~~~K~~L 129 (293)
.|......+-.||-+ .|.+.++=.+. -..|+...++.+..|
T Consensus 69 ~c~~~~~~~G~~CPT----tC~l~D~L~k~-q~~V~~~LqeLe~~l 109 (464)
T 1m1j_B 69 GCKHPLDELGVLCPT----GCELQTTLLKQ-EKTVKPVLRDLKDRV 109 (464)
T ss_dssp CEECSSTTTCEEEEC----TTHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred CccccCCCccCcCCC----ccHHHHHHHHh-hhhhHhHHHHHHHHH
Confidence 555555555566644 45444443321 223444444444433
No 56
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=29.05 E-value=2.3e+02 Score=22.94 Aligned_cols=9 Identities=22% Similarity=-0.060 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q psy583 128 LIKGLLSEV 136 (293)
Q Consensus 128 ~L~~~L~~l 136 (293)
.++..+..+
T Consensus 32 ~~w~Y~~q~ 40 (165)
T 1gs9_A 32 RFWDYLRWV 40 (165)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 57
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=29.01 E-value=55 Score=19.76 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=24.3
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy583 3 EMSALKAKLKEQNQRLITLNHEKAKLE 29 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (293)
-|.+|..|+.|--.+.-.|..|-+||.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 489999999999999999999999875
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=28.17 E-value=3.6e+02 Score=24.96 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy583 192 EICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLN 227 (293)
Q Consensus 192 ~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk 227 (293)
+......+.+.+...+++..+.++...+..+.+.++
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (487)
T 3oja_A 438 DMYQHKETQLAEENARLKKLNGEADLALASANATLQ 473 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHH
Confidence 333444455555666666666666666666655554
No 59
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=27.95 E-value=77 Score=25.65 Aligned_cols=53 Identities=17% Similarity=0.253 Sum_probs=21.4
Q ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 122 ATETKHLIKGL--LSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKL 174 (293)
Q Consensus 122 a~~~K~~L~~~--L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~eI~~~fe~ 174 (293)
-..|+..+..+ +..+......+.+..+.+.+..+.+..++..+...|......
T Consensus 61 rkkhkPRi~g~~kv~~L~~~~~~~~~i~~~Lk~~k~k~~~~v~~~~~~i~~~i~k 115 (148)
T 3gn4_A 61 KRRHKPRIDGLVKVGTLKKRLDKFNEVVSALKDGKQEMSKQVKDLEISIDALMAK 115 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 455555666666666666655555555666666655554443
No 60
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=27.18 E-value=3.9e+02 Score=24.99 Aligned_cols=105 Identities=10% Similarity=0.007 Sum_probs=53.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 117 QLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKR-------LTQEITEMVKLLTNAINLRGKQLAYK 189 (293)
Q Consensus 117 ~I~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~-------v~~eI~~~fe~Li~~Leere~~LL~e 189 (293)
-|++..-++...+...|..++..+.++....+.+..-...|+..... ....+......|...+.+-+.
T Consensus 24 ~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~~~~~~Q~~~~d~~e~~tq~skkml~~~~~~e~----- 98 (409)
T 1m1j_C 24 GIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIKTIYPSEKQTLPQSIEQLTQKSKKIIEEIIRYEN----- 98 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTCCSSCHHHHHHHHHHHHHHHHHTHH-----
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhhHHHHHHHHHHHHHHHHH-----
Confidence 47777777777777777777777777776666665555555443111 011111222222222222221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy583 190 LNEICDSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGL 226 (293)
Q Consensus 190 Le~~~~~kl~~L~~q~~~le~~L~~L~~~i~fveq~L 226 (293)
+-......+..|+.++......+..|...+..++..+
T Consensus 99 ~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 99 TILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 2222334445555555555666666665555555443
No 61
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.73 E-value=1.4e+02 Score=19.82 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 120 KWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLT 165 (293)
Q Consensus 120 eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~ 165 (293)
.||.+++..=...+..+..+...+..--..+...+..+.......+
T Consensus 11 ~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 11 AAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3666776666666776766666666666666555555555544443
No 62
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=26.61 E-value=2.2e+02 Score=21.93 Aligned_cols=43 Identities=2% Similarity=0.028 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 165 TQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVT 207 (293)
Q Consensus 165 ~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~ 207 (293)
+.++...+++=+.-+.+.-+.++.+++.....+.+.+....+.
T Consensus 59 klqLkse~e~E~ae~k~KYD~~lqe~ese~~~kkK~le~~~~k 101 (115)
T 3vem_A 59 KSILKAELERKMAEVQAEFRRKFHEVEAEHNTRTTKIEKDKNL 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555556666667776666666666555443
No 63
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.29 E-value=1.4e+02 Score=21.78 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHhhhhhhccccCCccchhhhhHHHHHhhhh
Q psy583 56 ALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSD 98 (293)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ce~ 98 (293)
.++.|...+..+..++.....++. .+.+-.+.|..+-+|
T Consensus 9 ~f~~lq~~~~~l~~q~~~l~~~~~----e~~~~~~EL~~l~~d 47 (107)
T 1fxk_A 9 QFQQLQQQAQAISVQKQTVEMQIN----ETQKALEELSRAADD 47 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHcCCCC
Confidence 344555555555555444444442 233444455555544
No 64
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=26.00 E-value=1.6e+02 Score=19.96 Aligned_cols=48 Identities=10% Similarity=0.116 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 119 DKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQ 166 (293)
Q Consensus 119 ~eAa~~~K~~L~~~L~~lk~k~~~le~~l~~l~e~~~~L~e~~e~v~~ 166 (293)
..|+..|+..=..-...+..+...++.--..+...+..+.......+.
T Consensus 11 r~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ 58 (63)
T 1ci6_A 11 KTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSLAKEIQYLKD 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888887777777777777777777666666666666655554443
No 65
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=25.63 E-value=3.1e+02 Score=23.24 Aligned_cols=48 Identities=8% Similarity=0.059 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 167 EITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRL 214 (293)
Q Consensus 167 eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~ 214 (293)
++.+.+++++..-.+.+..|+...-.+-..|...+..+.+++......
T Consensus 157 ~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~~~~~ 204 (213)
T 1ik9_A 157 DVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLLNAAQE 204 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 445678888888888888888887777777777777776666544433
No 66
>2l9z_A PR domain zinc finger protein 4; zinc-binding domain, transcription; NMR {Homo sapiens}
Probab=25.21 E-value=11 Score=23.55 Aligned_cols=18 Identities=11% Similarity=0.089 Sum_probs=13.0
Q ss_pred HHhhhhccchhh-hhcccc
Q psy583 93 ANMMSDSEKLYN-VYAEKR 110 (293)
Q Consensus 93 ~~~ce~c~~l~c-~~~eHk 110 (293)
-+|||+|+...- .|-.|.
T Consensus 11 yl~CE~C~~~~~~~Cp~HG 29 (39)
T 2l9z_A 11 TIWCTLCDRAYPSDCPEHG 29 (39)
T ss_dssp SEEEGGGTEEESSSBTTTB
T ss_pred hhHHHHHhhhchhhchhcC
Confidence 469999999844 566654
No 67
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=25.19 E-value=4.2e+02 Score=24.67 Aligned_cols=37 Identities=11% Similarity=0.181 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 156 LISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEI 193 (293)
Q Consensus 156 ~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~ 193 (293)
+|+.+...++..|...|. -++.|+.--+.++.++.+.
T Consensus 117 eLe~~i~~lk~~V~~q~~-~ir~Lq~~l~~q~~kiqRL 153 (390)
T 1deq_A 117 DLRSRIEILRRKVIEQVQ-RINLLQKNVRDQLVDMKRL 153 (390)
T ss_pred HHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 3444444444444333333
No 68
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=24.14 E-value=82 Score=23.99 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=40.8
Q ss_pred CchhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCchhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhh
Q psy583 1 MAEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLST 73 (293)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (293)
|++|..|...+..+-+-|..-.|-- .--+++-+...-+-+. -++...+-..+.|++|+..++++|-.
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKL---kdAe~~~E~DPDevNK---~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKL---KDAEKAVEVDPDDVNK---STLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCCHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCcHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566777777777777776554422 2222211111111122 56778888999999999999988653
No 69
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=23.91 E-value=3.4e+02 Score=23.23 Aligned_cols=23 Identities=4% Similarity=0.174 Sum_probs=10.9
Q ss_pred ccccccccchHHHHHHHHHHHHH
Q psy583 109 KRNINSGLQLDKWATETKHLIKG 131 (293)
Q Consensus 109 Hk~H~~~~~I~eAa~~~K~~L~~ 131 (293)
|++||...|+...+..++..|.+
T Consensus 6 ~~~~~~~~~~~~~f~~~~~~Ld~ 28 (240)
T 1j1j_A 6 HHHHHGSMSVSEIFVELQGFLAA 28 (240)
T ss_dssp -------CCHHHHHHHHHHHHHH
T ss_pred cccccCCccHHHHHHHHHHHHHH
Confidence 44555567888887776655543
No 70
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=23.84 E-value=1.2e+02 Score=22.65 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCchhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhh
Q psy583 1 MAEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLST 73 (293)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (293)
|++|-.|...+..+-+.|..-.|--. --+++-..-.-+-+ .-+|...+-.++.|.+|+..++++|-.
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLk---dA~~~~e~DPDevN---k~~~~~R~~~V~~lq~Ki~elkr~lAd 70 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLK---DAERAVELDPDDVN---KSTLQSRRAAVSALETKLGELKRELAD 70 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCcHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888876555322 22221110011112 256777888999999999999988643
No 71
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=22.73 E-value=1.3e+02 Score=21.65 Aligned_cols=67 Identities=18% Similarity=0.332 Sum_probs=41.2
Q ss_pred CchhHHHHHHHHHhhhhhhhhhhhhhhhhhhhhcCCCCCchhhhhhhhhhhchHHHHHHHHHHHHHHHHhhhh
Q psy583 1 MAEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLST 73 (293)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (293)
|++|-.|...+..+-+.|..-.|--. --+++-.. +.+.+ =.-+|...+-..+.|.+|+..++++|-.
T Consensus 4 M~~l~eLq~e~~~~E~QL~~A~QKLk---dA~~~~e~-DPDev--NK~~~~~R~~~V~~lq~Ki~elkrqlAd 70 (78)
T 2ic6_A 4 MSTLKEVQDNITLHEQRLVTTRQKLK---DAERAVEL-DPDDV--NKSTLQSRRAAVSALETKLGELKRELAD 70 (78)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-CCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhcC-CCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888888887776554322 22221110 11111 1246777788999999999999988653
No 72
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=22.60 E-value=84 Score=18.96 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHhhhhhhhhhhhhhhhh
Q psy583 3 EMSALKAKLKEQNQRLITLNHEKAKLE 29 (293)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (293)
-|++|..|+.+--++=-.|..|-|||.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 489999999988777777888888875
No 73
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=22.39 E-value=1.2e+02 Score=17.34 Aligned_cols=24 Identities=13% Similarity=0.018 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 120 KWATETKHLIKGLLSEVSYKRVLL 143 (293)
Q Consensus 120 eAa~~~K~~L~~~L~~lk~k~~~l 143 (293)
+|.++.+..|...|+.+..+++.+
T Consensus 4 ealekkcaalesklqalekkleal 27 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEAL 27 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566666666666666555544
No 74
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.63 E-value=4.1e+02 Score=23.24 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 158 SEKKKRLTQEITEMVKLLTNAINL 181 (293)
Q Consensus 158 ~e~~e~v~~eI~~~fe~Li~~Lee 181 (293)
...++.++..+....+.|..-|..
T Consensus 87 ~~~~eeLr~~L~p~~eelr~kl~~ 110 (273)
T 3s84_A 87 RENADSLQASLRPHADELKAKIDQ 110 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444333333333333333
No 75
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=21.57 E-value=3.2e+02 Score=22.05 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy583 156 LISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEIC---DSKQKTLNEKKVTLEQLSRLTDHCIEFVNNGLN 227 (293)
Q Consensus 156 ~L~e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~---~~kl~~L~~q~~~le~~L~~L~~~i~fveq~Lk 227 (293)
..+..++.....|....+.|-..|=.+...+.......+ +.+...|..++......+..+..-...+..++.
T Consensus 72 ~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 72 ELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555666667777777777777777777766544332 334455666666666666666666666666553
No 76
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=21.57 E-value=6e+02 Score=25.13 Aligned_cols=70 Identities=10% Similarity=0.053 Sum_probs=36.1
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy583 148 KVIDDRQNLIS-EKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTDH 217 (293)
Q Consensus 148 ~~l~e~~~~L~-e~~e~v~~eI~~~fe~Li~~Leere~~LL~eLe~~~~~kl~~L~~q~~~le~~L~~L~~ 217 (293)
..+.+...++. +..+.+...|.+.|..+...+..+-...+..++..-+.-......+...++..+..|..
T Consensus 599 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 669 (695)
T 2j69_A 599 KELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKN 669 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 33444444443 23345556667777777666666665555555554444444444444444444444444
No 77
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=20.61 E-value=1.8e+02 Score=21.87 Aligned_cols=15 Identities=0% Similarity=-0.128 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q psy583 126 KHLIKGLLSEVSYKR 140 (293)
Q Consensus 126 K~~L~~~L~~lk~k~ 140 (293)
|..+..++-.++..+
T Consensus 20 rN~aEsliy~~e~~L 34 (120)
T 2p32_A 20 HMGLESYAFNLKQTI 34 (120)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555566555555543
Done!