RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy583
(293 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 4e-08
Identities = 54/326 (16%), Positives = 103/326 (31%), Gaps = 85/326 (26%)
Query: 9 AKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQ----LALKTLREKI 64
+ + Q + ++++ + K D Q+ ++SK++ + K
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCK-------DVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 65 QDLESQLSTKEKDL------EVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRN--INSGL 116
L L +K++++ EV N L + + +Y E+R+ N
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 117 QLDKW----ATETKHLIKGLLSEVSYKRVLL-------KS--AMKVIDDRQNL------- 156
K+ L + LL K VL+ K+ A+ V +
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 157 --ISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRL 214
++ K + + EM++ L Q+ D +L R
Sbjct: 185 FWLNLKNCNSPETVLEMLQKLLY-------QIDPNWTSRSDHSSNIKLRIHSIQAELRR- 236
Query: 215 TDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVIDD--RPTIPE--DTSYKITLKS 270
LL SK Y+ LL V+ + + S KI L
Sbjct: 237 -------------------LLKSKPYENCLL-----VLLNVQNAKAWNAFNLSCKILL-- 270
Query: 271 PSSSTSSKSVT---PPSSSVNIPLNN 293
+T K VT +++ +I L++
Sbjct: 271 ---TTRFKQVTDFLSAATTTHISLDH 293
Score = 52.2 bits (124), Expect = 1e-07
Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 93/313 (29%)
Query: 10 KLKEQNQRLITLN--HEKAKLEARTKANPGAHADEQEQTNLLI-----SKKQ-LALKTLR 61
+L NQ N + L+ R + + N+LI S K +AL
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQAL-----LELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 62 EKIQDLESQLSTKEKDLEVNNSN-LDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDK 120
++ ++ K L + N N + + + L ++ + + ++ + N L++
Sbjct: 173 SY--KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-HSSNIKLRIH- 228
Query: 121 WATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQN------------------------- 155
+ ++ LL Y+ LL V+ + QN
Sbjct: 229 ---SIQAELRRLLKSKPYENCLL-----VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280
Query: 156 LISEKKKRLTQEI-------TEMVKLLTNAINLRGKQL---AYKLN--------EICDSK 197
L + ++ + E+ LL ++ R + L N E
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG 340
Query: 198 QKTLNE-KKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVIDDRP 256
T + K V ++L+ + + + L Y+++ + ++
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNV-------------LEPAEYRKMFDRLSV------- 380
Query: 257 TIPEDTSYKITLK 269
P I
Sbjct: 381 -FPPSA--HIPTI 390
Score = 29.1 bits (64), Expect = 2.3
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 22/101 (21%)
Query: 28 LEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVN----NS 83
LE + + + A N L LK + I D + + +
Sbjct: 503 LEQKIRHDSTAWNASGSILNTLQQ-----LKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 84 NLDDLKKT----LANMMSDSEKLYNVYAEKRNINSGLQLDK 120
NL K T +A +M++ E ++ A K Q+ +
Sbjct: 558 NLICSKYTDLLRIA-LMAEDEAIFEE-AHK-------QVQR 589
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 51.8 bits (124), Expect = 1e-07
Identities = 41/218 (18%), Positives = 82/218 (37%), Gaps = 24/218 (11%)
Query: 2 AEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLR 61
E K+K+ ++ + + KL K +D +++++ K L
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTN----LAEEEEKAKNLT 1031
Query: 62 EKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGL--QLD 119
+ ES +S E L+ + +L+K + +S L+ AE + + L QL
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLA 1091
Query: 120 KWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISE-------------KKKRLTQ 166
K E + + L E S K LK ++ +L + +K+ L++
Sbjct: 1092 KKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151
Query: 167 EITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEK 204
E+ + L + ++ Q E+ S K ++K
Sbjct: 1152 ELEALKTELEDTLDTTATQ-----QELRGSDYKDDDDK 1184
Score = 44.1 bits (104), Expect = 4e-05
Identities = 41/242 (16%), Positives = 94/242 (38%), Gaps = 34/242 (14%)
Query: 7 LKAKLKEQNQRLITLNHEKAKLE---------------ARTKANPGAHADEQEQTNLL-- 49
++A+++E+ +R L EK K++ AR K + + +
Sbjct: 932 MEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDD 991
Query: 50 -------ISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKL 102
+K K L E++ DL + L+ +E+ + + + ++ + +K
Sbjct: 992 ILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKE 1051
Query: 103 YNVYAEKRNINSGLQ-----LDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLI 157
E I L+ L + E + I L ++++ K L++A+ ++D +
Sbjct: 1052 EKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQK 1111
Query: 158 S---EKKKRLTQEITEMVKLLTNAINLRGK--QLAYKLNEICDSKQKTLNEKKVTLEQLS 212
+ +K + L I+++ + L + R K + L+E ++ + L + T
Sbjct: 1112 NNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171
Query: 213 RL 214
L
Sbjct: 1172 EL 1173
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 45.5 bits (108), Expect = 1e-05
Identities = 20/170 (11%), Positives = 61/170 (35%), Gaps = 17/170 (10%)
Query: 5 SALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKI 64
L+ K+ + +++ N E L + ++ E E+ + L+ E+
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK----LRSDVERLRMSEEEA 979
Query: 65 QDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATE 124
++ +++ + ++++ L + + ++K + + ++ +E
Sbjct: 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKH------------ETEQLVSE 1027
Query: 125 TKHLIKGLLSEVSYKRVLLKSAMKVIDDRQN-LISEKKKRLTQEITEMVK 173
K L +E + K I + + E+ K+L ++ +
Sbjct: 1028 LKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERL 1077
Score = 38.6 bits (90), Expect = 0.002
Identities = 29/229 (12%), Positives = 77/229 (33%), Gaps = 20/229 (8%)
Query: 1 MAEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQL-ALKT 59
+ + L+E +I + A Q +++K++L LK
Sbjct: 852 YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKI 911
Query: 60 LREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAE-----KRNINS 114
++ + E + +D+ K +++ L Y+ + ++
Sbjct: 912 EARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971
Query: 115 GLQLDKWATETKHLIKGLLSEVSY-----------KRVLLKSAMKV---IDDRQNLISEK 160
++ A + + L E++ K+ + + A K + + + E+
Sbjct: 972 LRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQ 1031
Query: 161 KKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQKTLNEKKVTLE 209
L E E+ + + + + + KL E + LN++++ +
Sbjct: 1032 NTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator
of cytoplasmic dynein; 3.4A {Mus musculus} SCOP:
b.69.4.1
Length = 410
Score = 33.3 bits (77), Expect = 0.086
Identities = 13/72 (18%), Positives = 34/72 (47%)
Query: 16 QRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKE 75
L + +E+A + +A + + ++ L+ KK ++ L++K+ +LES+L+ +
Sbjct: 17 DYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAK 76
Query: 76 KDLEVNNSNLDD 87
++
Sbjct: 77 EEFTSGGPLGQK 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.40
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 15/42 (35%)
Query: 24 EK---AKLEARTKANPGAHADEQEQTNLLISKKQLALKTLRE 62
EK KL+A K +AD+ S LA+K E
Sbjct: 18 EKQALKKLQASLK----LYADD--------SAPALAIKATME 47
Score = 28.4 bits (62), Expect = 1.8
Identities = 4/27 (14%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
Query: 61 REKIQDLESQLSTKEKD----LEVNNS 83
++ ++ L++ L D L + +
Sbjct: 19 KQALKKLQASLKLYADDSAPALAIKAT 45
>2v95_A Corticosteroid-binding globulin; transport protein, CBG, RCL,
serpin, secreted, transport, glycoprotein,
lipid-binding, glucocorticoids; HET: HCY; 1.93A {Rattus
norvegicus}
Length = 371
Score = 29.5 bits (67), Expect = 1.4
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 21/115 (18%)
Query: 37 GAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSN---LDDLKKTLA 93
G+ + Q+ L + + + + + Q L L + LE+N N L K
Sbjct: 50 GSAQTQSLQS-LGFNLTETSEAEIHQSFQYLNYLLKQSDTGLEMNMGNAMFLLQKLKLKD 108
Query: 94 NMMSDSEKLYNVYAE----------KRNINSGLQLDKW-ATETKHLIKGLLSEVS 137
+ ++D ++ Y A + IN +T+ I+ + S++
Sbjct: 109 SFLADVKQYYESEALAIDFEDWTKASQQINQ------HVKDKTQGKIEHVFSDLD 157
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 28.8 bits (64), Expect = 1.6
Identities = 30/163 (18%), Positives = 67/163 (41%), Gaps = 17/163 (10%)
Query: 58 KTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGL- 116
K L + +LE Q++ +LE ++ +LK L + S + +V K+ + +
Sbjct: 7 KILSQAPTELELQVAQAFVELENSSP---ELKAELRPLQFKSIREIDVAGGKKALAIFVP 63
Query: 117 --QLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVI--DDRQNLISEKKKR---LTQEIT 169
L + L + L + + V+ + +++ R + +K+ R LT
Sbjct: 64 VPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHD 123
Query: 170 EMVKLLTNAINLRGKQLAYKLNE------ICDSKQKTLNEKKV 206
++++ L + GK++ Y + + DSK + K+
Sbjct: 124 KILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKL 166
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 29.3 bits (65), Expect = 1.6
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 2 AEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADE-------QEQTNLLISKKQ 54
AL + + L+ E ++LEA NP DE ++Q + +
Sbjct: 897 KSARALIDAARNEADE--KLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAG 954
Query: 55 LALKTLR 61
L LR
Sbjct: 955 WRLDALR 961
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit;
mitosis, neuroge cytoskeleton, cell division,
microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Length = 88
Score = 27.5 bits (61), Expect = 1.6
Identities = 13/62 (20%), Positives = 34/62 (54%)
Query: 18 LITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKD 77
L + +E+A + +A + + ++ L+ KK ++ L++K+ +LES+L+ +++
Sbjct: 21 LRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKVMELESKLNEAKEE 80
Query: 78 LE 79
Sbjct: 81 FT 82
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase,
actin-bindi protein binding, cytoskeleton regulator;
2.70A {Drosophila melanogaster}
Length = 190
Score = 28.5 bits (63), Expect = 2.2
Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 16/162 (9%)
Query: 37 GAHADEQEQTNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMM 96
G +E TNL+ K +K L +KI L+ + T ++ N+ DL LA +
Sbjct: 1 GIDPFTEEPTNLIKQKMDELIKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKV 60
Query: 97 SDSEKLYNVYAEKRNINSGLQLDKWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNL 156
SE A K + + I LL +S + +S+++ +
Sbjct: 61 RPSE------ASKFRTHVD-AVGN--------ITSLLLSLSERLAQTESSLETRQQERGA 105
Query: 157 ISEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICDSKQ 198
+ K+ L +++ E + L + I RG +A L + +
Sbjct: 106 LESKRDLLYEQMEE-AQRLKSDIERRGVSIAGLLAKNLSADM 146
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 28.2 bits (62), Expect = 2.5
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 4/104 (3%)
Query: 7 LKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKIQD 66
L+A+L + QR L + +L+ +A + Q+ +S + L R +
Sbjct: 47 LEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ 106
Query: 67 LESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKR 110
L + ++LE N +L+ K+ + D E+ N E+
Sbjct: 107 LHKYV----RELEQANDDLERAKRATIMSLEDFEQRLNQAIERN 146
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 28.2 bits (62), Expect = 4.0
Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 13/109 (11%)
Query: 3 EMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLRE 62
M L+ K+ + ++L + KA+ D + + + KK + + L E
Sbjct: 469 SMMNLQTKIDAKKEQLADARRDLKSA----KADAKVMKDAKTKKVVESKKKAV--QRLEE 522
Query: 63 KIQDLESQLSTKE--KDLEVNNSNLDDLKKTLANMMSDS-----EKLYN 104
++ LE Q + +E K + + S L+ L + EK+YN
Sbjct: 523 QLMKLEVQATDREENKQIALGTSKLNYLDPRITVAWCKKWGVPIEKIYN 571
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 6.1
Identities = 9/62 (14%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 12 KEQNQRLITLNHEKAKLEARTKANPGAHADEQ-EQTNLLISKKQLALKTLREK-IQDLES 69
+EQ +RL L+ +E + +E ++ + + K ++ + + Q ++
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Query: 70 QL 71
+
Sbjct: 152 DI 153
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil,
coiled coil, cytoplasm, disease mutation, ectodermal
dysplasia; 3.20A {Homo sapiens}
Length = 130
Score = 26.4 bits (57), Expect = 6.6
Identities = 21/126 (16%), Positives = 43/126 (34%)
Query: 5 SALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLREKI 64
S +L+E RL E LE R +A + + L + + + LR +
Sbjct: 5 SGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQG 64
Query: 65 QDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLDKWATE 124
Q +E+ L + + L L+ + + + G+QL+ +
Sbjct: 65 QSVEAALRMERQAASEEKRKLAQLQVAYHQLFQEYDNHIKSSVVGSERKRGMQLEDLKQQ 124
Query: 125 TKHLIK 130
+ +
Sbjct: 125 LQQAEE 130
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 27.1 bits (60), Expect = 7.0
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 255 RPTIPED-----TSYKITLKSPSSSTSSKSVTPPSSSVNIP 290
+ P + Y++TL S + +V +VN+
Sbjct: 30 KTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKLTVNLT 70
>3b9f_I Protein C inhibitor; michaelis complex, acute phase, blood
coagulation, cleavage of basic residues, disease
mutation; HET: NAG FUC SGN IDS; 1.60A {Homo sapiens}
PDB: 2ol2_A*
Length = 395
Score = 27.2 bits (61), Expect = 7.0
Identities = 22/117 (18%), Positives = 41/117 (35%), Gaps = 22/117 (18%)
Query: 37 GAHADEQEQ--TNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSN---LDDLKKT 91
GA + + Q L ++ ++ + K L Q L +L+ +++ N D +
Sbjct: 71 GAGSSTKMQILEGLGLNLQKSSEKELHRGFQQLLQELNQPRDGFQLSLGNALFTDLVVDL 130
Query: 92 LANMMSDSEKLYNVYAE----------KRNINSGLQLDKW-ATETKHLIKGLLSEVS 137
+S + LY + IN + A +TK I LL +
Sbjct: 131 QDTFVSAMKTLYLADTFPTNFRDSAGAMKQIND------YVAKQTKGKIVDLLKNLD 181
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
2.80A {Staphylococcus aureus}
Length = 514
Score = 27.1 bits (61), Expect = 7.5
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 46 TNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKK 90
TN I + K L I+ L L + L V L+++KK
Sbjct: 452 TNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKK 496
>2c9k_A Pesticidal crystal protein CRY4AA; toxin, insect toxin,
bioinsecticicide, pore formation, receptor recognition,
sporulation; 2.8A {Bacillus thuringiensis}
Length = 612
Score = 27.2 bits (59), Expect = 8.3
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 1/46 (2%)
Query: 183 GKQLAYKLNEICDSKQKTLNEKKVTLEQLSRL-TDHCIEFVNNGLN 227
L T + L + T++C+ GLN
Sbjct: 161 EAYLKNNRQFDYLEPLPTAIDYYPVLTKAIEDYTNYCVTTYKKGLN 206
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 26.9 bits (60), Expect = 8.3
Identities = 9/59 (15%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 201 LNEKKVTLEQLSRLTDHCIEFVNNGLNTGSDMALLSSKAYKRVLLKSAMKVIDDRPTIP 259
+N ++ L + I+ + + + ++ +SS ++++ +L + ++ ++RP +P
Sbjct: 15 VNRFRLE-NGKEELALYQIQLLKDQSHNENEEDKVSSSSFRQRILGNLLQPPNERPELP 72
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A
{Enterobacteria phage lambda}
Length = 236
Score = 26.5 bits (58), Expect = 10.0
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 158 SEKKKRLTQEITEMVKLLTNAINLRGKQLAYKLNEICD 195
S KKK LTQE E + L + +L + D
Sbjct: 1 STKKKPLTQEQLEDARRLKAIYEKKKNELGLSQESVAD 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.123 0.319
Gapped
Lambda K H
0.267 0.0456 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,826,118
Number of extensions: 214808
Number of successful extensions: 566
Number of sequences better than 10.0: 1
Number of HSP's gapped: 548
Number of HSP's successfully gapped: 91
Length of query: 293
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 200
Effective length of database: 4,105,140
Effective search space: 821028000
Effective search space used: 821028000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.4 bits)