RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy583
         (293 letters)



>d1kq3a_ e.22.1.2 (A:) Glycerol dehydrogenase {Thermotoga maritima
           [TaxId: 2336]}
          Length = 364

 Score = 28.4 bits (62), Expect = 1.1
 Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 2/106 (1%)

Query: 1   MAEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTL 60
           + E + L + L  ++  L   +     L      +   H ++     L         + +
Sbjct: 232 IVEANTLLSGLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDKPRKM 291

Query: 61  REKIQDL--ESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYN 104
            E++     E  L T   ++ ++  + +DL K        +E ++N
Sbjct: 292 IEEVYSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETIHN 337


>d2fcwa1 a.13.1.1 (A:216-320) alpha-2-Macroglobulin receptor
          associated protein (RAP) {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 105

 Score = 26.8 bits (59), Expect = 1.6
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 3  EMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLALKTLRE 62
          E+ A + +LK    ++   NH + +LE   +    A +    +    +S+ +     L  
Sbjct: 24 ELEAFREELKHFEAKIEKHNHYQKQLEIAHEKLRHAESVGDGE---RVSRSREKHALLEG 80

Query: 63 KIQDLESQLSTKEKDLE 79
          + ++L   +    +DL 
Sbjct: 81 RTKELGYTVKKHLQDLS 97


>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
          Length = 493

 Score = 27.2 bits (60), Expect = 2.8
 Identities = 11/49 (22%), Positives = 23/49 (46%)

Query: 46  TNLLISKKQLALKTLREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLAN 94
           T L   K     K L ++I +L   L + ++ +EV    L+ +++   +
Sbjct: 438 TGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 486


>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 288

 Score = 25.9 bits (56), Expect = 5.6
 Identities = 24/217 (11%), Positives = 59/217 (27%), Gaps = 2/217 (0%)

Query: 1   MAEMSALKAKLKEQNQRLITLNHEKAKLEARTKANPGAHADEQEQTNLLISKKQLAL-KT 59
           +++    K   KE+ +   T                G H    E     I        + 
Sbjct: 49  LSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQE 108

Query: 60  LREKIQDLESQLSTKEKDLEVNNSNLDDLKKTLANMMSDSEKLYNVYAEKRNINSGLQLD 119
           L+++ +         ++ +E     L+  K+       ++++    + +     +  +  
Sbjct: 109 LKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTK-A 167

Query: 120 KWATETKHLIKGLLSEVSYKRVLLKSAMKVIDDRQNLISEKKKRLTQEITEMVKLLTNAI 179
                 +            K        K   ++          + Q+I EM +     +
Sbjct: 168 DVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIVRM 227

Query: 180 NLRGKQLAYKLNEICDSKQKTLNEKKVTLEQLSRLTD 216
               K  A    ++     K L+      E + +  D
Sbjct: 228 GESMKTYAEVDRQVIPIIGKCLDGIVKAAESIDQKND 264


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.308    0.123    0.319 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 901,104
Number of extensions: 38560
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 29
Length of query: 293
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 208
Effective length of database: 1,240,546
Effective search space: 258033568
Effective search space used: 258033568
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 52 (24.4 bits)