Query psy5830
Match_columns 503
No_of_seqs 146 out of 1118
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 19:01:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5830.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5830hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1373|consensus 100.0 4E-111 9E-116 851.6 37.2 457 1-503 2-476 (476)
2 PTZ00219 Sec61 alpha subunit; 100.0 6E-101 1E-105 820.8 38.2 448 1-494 3-469 (474)
3 PRK08568 preprotein translocas 100.0 4.8E-92 1E-96 751.3 36.8 427 4-494 2-450 (462)
4 COG0201 SecY Preprotein transl 100.0 1.1E-82 2.5E-87 670.7 27.7 379 12-494 2-424 (436)
5 TIGR00967 3a0501s007 preprotei 100.0 7.8E-78 1.7E-82 634.4 25.9 364 30-494 1-407 (410)
6 PRK09204 secY preprotein trans 100.0 1.4E-76 3E-81 627.4 28.6 357 25-491 10-416 (426)
7 CHL00161 secY preprotein trans 100.0 4.5E-75 9.8E-80 614.5 31.2 359 25-492 6-407 (417)
8 PRK12907 secY preprotein trans 100.0 3.5E-75 7.7E-80 616.6 29.6 360 26-492 11-421 (434)
9 PRK12417 secY preprotein trans 100.0 9E-74 2E-78 601.7 29.5 348 25-492 8-393 (404)
10 TIGR02920 acc_sec_Y2 accessory 100.0 4E-71 8.7E-76 580.8 29.7 350 28-492 1-386 (395)
11 PF00344 SecY: SecY translocas 100.0 3.6E-62 7.8E-67 505.2 22.3 310 76-486 1-346 (346)
12 PF10559 Plug_translocon: Plug 98.2 6.5E-07 1.4E-11 63.8 1.8 35 41-75 1-35 (35)
13 PF04923 Ninjurin: Ninjurin ; 35.8 63 0.0014 28.6 4.5 45 83-127 45-93 (104)
14 PRK08568 preprotein translocas 26.2 2E+02 0.0042 31.9 7.3 111 383-494 341-454 (462)
15 PF12263 DUF3611: Protein of u 23.6 4.2E+02 0.0092 25.8 8.2 49 384-443 57-107 (183)
16 PRK15374 pathogenicity island 23.0 2.9E+02 0.0062 31.5 7.7 55 437-494 307-362 (593)
No 1
>KOG1373|consensus
Probab=100.00 E-value=3.9e-111 Score=851.64 Aligned_cols=457 Identities=77% Similarity=1.269 Sum_probs=443.2
Q ss_pred CCcchHhhHhHHhhhCCCccCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcChhHHHHHHhhcCccccccc
Q psy5830 1 MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMEL 80 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~lp~v~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~i~ag~~~Slf~L 80 (503)
+|+|++|.+|||++++|||+.|+ ||.++|+|++||.+.+++|.+++|||++|+.+++.+||++|+|.++|+||+|+|+|
T Consensus 2 ~g~R~l~~vkPf~~~lPEv~~Pe-rk~pf~eK~~wt~i~~~iflv~~QiPLyGi~ssdt~DP~yw~RvilasnrgTLMel 80 (476)
T KOG1373|consen 2 SGFRFLDLVKPFLSFLPEVEAPE-RKLPFREKLLWTAISLLIFLVCSQIPLYGIMSSDTADPFYWMRVILASNRGTLMEL 80 (476)
T ss_pred CCcchhhhhhhhhccCccccCch-hcCcHHHHHHHHHHHHHHHHHHhhccccccccCCCCCcHHHHHHHHhcCCcchhhh
Confidence 58999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHhHHHHHHHHhhchhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCCceee------------e
Q psy5830 81 GISPIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSEIGA------------A 147 (503)
Q Consensus 81 GI~PyItAsIi~QLL~~~kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~~~~~l~~------------a 147 (503)
||.|++|++++||+|+++|++++| +.++||+.||..||++++++++.||+.++++|+||+++++++ |
T Consensus 81 GisPivtSglimQlLag~kiIeV~~~~~~DR~Lfn~aQKl~~iii~vgqa~~yV~tG~yG~p~dLg~~~clLii~QL~~A 160 (476)
T KOG1373|consen 81 GISPIVTSGLIMQLLAGSKIIEVNFNIKEDRELFNGAQKLFAIIITVGQAVVYVMTGMYGSPSDLGVGICLLIILQLFFA 160 (476)
T ss_pred ccchhhHHHHHHHHHccCcEEEecCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccCChhhcchhHHHHHHHHHHHh
Confidence 999999999999999999999999 788999999999999999999999999999999998877643 6
Q ss_pred cc-----cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcC
Q psy5830 148 GV-----PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQN 222 (503)
Q Consensus 148 G~-----~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~ 222 (503)
|. ||+.|||||+|||+||||++|||++++|+.|+|.+++++||.|+||++++++|.+.+++||.+|++++|+|+|
T Consensus 161 giiv~lLdEllqKGyGlgSGislfiatnice~ivwkaFsptti~tGrg~efeGAvIalfhll~tr~~k~~al~eAF~Rqn 240 (476)
T KOG1373|consen 161 GIIVILLDELLQKGYGLGSGISLFIATNICESIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRKDKVRALREAFYRQN 240 (476)
T ss_pred hHHHHHHHHHHHhccCcCcchhhhhHHHHHHHHHHHhcCceEEecCCCceechHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence 64 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHhhcCeEEEeeceeccccCCcccceeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhh
Q psy5830 223 LPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLEN 302 (503)
Q Consensus 223 lp~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~~g~~~~yPiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~ 302 (503)
+||+..++++++++++|+|+|+.|+++|++++|.||+.++||||++|+|+||||+.|++.++.+.++
T Consensus 241 LPNl~nl~at~lif~iViYlQgfRVeLPirS~r~RG~~~~yPIKL~YTsn~pIilqsalvsni~~is------------- 307 (476)
T KOG1373|consen 241 LPNLTNLLATVLIFLIVIYLQGFRVELPIRSTRARGQYGSYPIKLFYTSNMPIILQSALVSNIFVIS------------- 307 (476)
T ss_pred ccHHHHHHHHHHHHHHHhhccceEEEeeecchhhcccCCccceEeeecCCcHHHHHHHHHHHHHHHH-------------
Confidence 9999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred hhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCcccccc
Q psy5830 303 GLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHIL 382 (503)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~ 382 (503)
|++++++++|..++++|.|.+... +.+++|++|++||++||.++.+.+
T Consensus 308 ------------------------------qll~~k~~~n~~v~llG~w~~~~~--~~~~~p~~glsyy~~pp~s~~~~~ 355 (476)
T KOG1373|consen 308 ------------------------------QLLYKKFPGNFLVRLLGVWEDSEG--GGRSMPVSGLSYYITPPESFGEAL 355 (476)
T ss_pred ------------------------------HHHHhhCCCceEEEEEeeeecCCC--CcccccccceeEecCChHHHHHHh
Confidence 899999999999999999988652 357789999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCchhHHHHHhhhhhhhhhhHHHHHHHHHHH
Q psy5830 383 EDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLA 462 (503)
Q Consensus 383 ~~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~t~~yL~k~i~~~t~~G~~~l~~ia~lp 462 (503)
.||+|.++|++|++..|.+||+.|+|+||++|||+|||||+|++.++|+|++++.|+|+||||.++++||.|++++++++
T Consensus 356 ~dPi~~i~Yi~fml~sca~FsktWievSgsSarDvAkqlKeQ~mvm~G~RE~n~~~eLnr~IPtAA~~Gg~~igaltV~~ 435 (476)
T KOG1373|consen 356 QDPIHFLVYIVFMLGSCALFSKTWIEVSGSSARDVAKQLKEQQMVMRGHRETNMAKELNRYIPTAAAFGGLCIGALTVLA 435 (476)
T ss_pred hCcchhHHHHHHHHHHHHHHHhHHHHHcCCCHHHHHHHHHhccceecCcchhhHHHHHHhhccHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcccCcccchhHHHHHHHHHHHHHHHhhhhcCcccccCC
Q psy5830 463 DFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF 503 (503)
Q Consensus 463 ~llg~~g~GTsiLI~V~vi~~~~~qi~~e~~~~~~~~~~~~ 503 (503)
|++|.+|+||+++++|+++++++|+++||+.+++|+..+.+
T Consensus 436 d~lgaiGsgtgIllavt~iyqy~E~~~kE~~~~~g~~~~~~ 476 (476)
T KOG1373|consen 436 DLLGAIGSGTGILLAVTIIYQYFEIFAKEQAQEGGFSALFF 476 (476)
T ss_pred HHhhcccCCceEEeehHHHHHHHHHHHHHHhhcCCcccCCC
Confidence 99999999999999999999999999999999999987754
No 2
>PTZ00219 Sec61 alpha subunit; Provisional
Probab=100.00 E-value=6.5e-101 Score=820.85 Aligned_cols=448 Identities=70% Similarity=1.166 Sum_probs=403.4
Q ss_pred CCcchHhhHhHHhhhCCCccCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcChhHHHHHHhhcCccccccc
Q psy5830 1 MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMEL 80 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~lp~v~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~i~ag~~~Slf~L 80 (503)
||++|+|.+||+.+++|||++|+ |++++|+|++||++++++||+|++||+||+|.+...|++.+++++|+|+++|+|+|
T Consensus 3 ~~~~~~~~~~~~~~~lP~v~~p~-~~~~lr~Kil~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~ifag~~~slf~L 81 (474)
T PTZ00219 3 KMTRFLNLLRPAMAILPEVAEPD-RKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSSDPFYWMRVILASNRGTLMEL 81 (474)
T ss_pred CcchHHHHHHHHHHhCCCccCCc-cCccHHHHHHHHHHHHHHHHHhccCcCCCcChhhccchHHHHHHHHhcCcchHHHh
Confidence 78999999999999999999999 99999999999999999999999999999999877899999999999999999999
Q ss_pred CchhHHhHHHHHHHHhhchhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccCCC---Cc--e------eeec
Q psy5830 81 GISPIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDP---SE--I------GAAG 148 (503)
Q Consensus 81 GI~PyItAsIi~QLL~~~kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~~~---~~--l------~~aG 148 (503)
||+|||||||+||||++.++.+.+ +.++||+|+|++||++|+++|++||++++..+.++.. +. . .++|
T Consensus 82 GI~PyItAsII~QLL~~~~l~~~~~~~~~~r~k~~~~tr~lti~la~iqa~~~~~~~~~g~~~~~~~~~~~~iilqL~~g 161 (474)
T PTZ00219 82 GISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQKLLGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFA 161 (474)
T ss_pred ccHHHHHHHHHHHHHhhCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCccHHHHHHHHHHHHHH
Confidence 999999999999999988888877 4778999999999999999999999999865433321 11 0 2344
Q ss_pred c------cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcC
Q psy5830 149 V------PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQN 222 (503)
Q Consensus 149 ~------~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~ 222 (503)
. ||+++||||+|||+||||++|||++++|+.+++.+...+++.|++|+++++++...+++++..+++++++|.+
T Consensus 162 ~~~v~wL~E~Itkg~GIGnGiSL~I~agI~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~r~~ 241 (474)
T PTZ00219 162 GIVVILLDELLQKGYGLGSGISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPH 241 (474)
T ss_pred HHHHHHHHHHHhcCcccccchHHHHHHHHHHHhHHHhcccccccccccccchhhHHHHHHHHhhcccccchhhhhhhhcc
Confidence 3 9999999999999999999999999999999988777777778999999988765567788899999999999
Q ss_pred chhHHHHHHHHHHHHHHHhhcCeEEEeeceeccccCCcccceeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhh
Q psy5830 223 LPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLEN 302 (503)
Q Consensus 223 lp~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~~g~~~~yPiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~ 302 (503)
+|+++.++++++++++++|+|++|||||++|+|++|.+++||+|+||+|+||+||||+++++|++++
T Consensus 242 l~~~~~~~~~~~i~~~vv~~~~~~~~IPi~~~~~~g~~~~~PiKln~agvmPiIfassll~~p~~i~------------- 308 (474)
T PTZ00219 242 LPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALVSNLYFFS------------- 308 (474)
T ss_pred cccHHHHHHHHHHHHhheeeeeeEEEEeeecccccCcCcccceeecccccHHHHHHHHHHHHHHHHH-------------
Confidence 9998888899999999999999999999999999987777899999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCcccccc
Q psy5830 303 GLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHIL 382 (503)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~ 382 (503)
+++++.++++..++++++|.+... ++.++|++|++||++||.++.+.+
T Consensus 309 ------------------------------~~l~~~~~~~~~~~~l~~~~~~~~--~~~~~~v~gl~~~l~~p~~~~~~~ 356 (474)
T PTZ00219 309 ------------------------------QILYRRFKNNFLINLLGQWQEVEY--SGQSVPVGGLAYYLSPPNSFSDII 356 (474)
T ss_pred ------------------------------HHHHhcCCCCcccccccceecccc--ccccccchhHHhhcCCCcchhhhh
Confidence 555444455544455667753100 124569999999999999988888
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch-hHHHHHhhhhhhhhhhHHHHHHHHHH
Q psy5830 383 EDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS-MIHELNRYIPTAAAFGGLCIGALSVL 461 (503)
Q Consensus 383 ~~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~-t~~yL~k~i~~~t~~G~~~l~~ia~l 461 (503)
.+|+|.++|++++++||+||+.+|+|+||.||||+||||||+|++|||+|||+ |+|||+|+++|+|++||+|++++|++
T Consensus 357 ~~p~~~iiy~ilii~fs~ffs~~~v~~sg~~p~~iA~~lkk~g~~IpG~RpGk~t~~yL~k~i~r~t~~Ga~~l~~ia~l 436 (474)
T PTZ00219 357 NDPIHTILYIVFVLFSCALFSKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIPTAASFGGMCIGALTIL 436 (474)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCccCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999995 99999999999999999999999999
Q ss_pred HHHHcccCcccchhHHHHHHHHHHHHHHHhhhh
Q psy5830 462 ADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSE 494 (503)
Q Consensus 462 p~llg~~g~GTsiLI~V~vi~~~~~qi~~e~~~ 494 (503)
|++++..|||||+||+|||+++++|+++|||..
T Consensus 437 p~~~~~~~gGTslLI~VgV~~~~~e~~~~e~~~ 469 (474)
T PTZ00219 437 ADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQ 469 (474)
T ss_pred HHHHHhcCCchhhhhhHHHHHHHHHHHHHHHhh
Confidence 999988889999999999999999999999876
No 3
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=4.8e-92 Score=751.25 Aligned_cols=427 Identities=39% Similarity=0.703 Sum_probs=374.5
Q ss_pred chHhhHhHHhhhCCCccCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcChhHHHHHHhhcCcccccccCch
Q psy5830 4 KFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGIS 83 (503)
Q Consensus 4 ~~~~~~~~~~~~lp~v~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~i~ag~~~Slf~LGI~ 83 (503)
.++|++||+.+++|||++|+ |++++|+|++||++++++||+|++||+||+|.++ .|++.+++.++||+++|+|+|||+
T Consensus 2 ~~~~~~~~~~~~~P~v~~p~-~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~-~~~l~~l~~~~gg~~~slf~LGI~ 79 (462)
T PRK08568 2 GFLDKLEPILERLPAVKRPK-GHVPFKEKLKWTAIVLILYFILTNIPLYGISQSS-QDLFELLRIIFAGSFGTLLQLGIG 79 (462)
T ss_pred CHHHHHHHHHHhCCCccCCC-cCccHHHHHHHHHHHHHHHHHHccCcCCCcCccc-ccHHHHHHHHhCCcccchHHhCcH
Confidence 37999999999999999999 9999999999999999999999999999999876 789999998999999999999999
Q ss_pred hHHhHHHHHHHHhhchhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccCC-----CCc--------eeeecc
Q psy5830 84 PIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGD-----PSE--------IGAAGV 149 (503)
Q Consensus 84 PyItAsIi~QLL~~~kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~~-----~~~--------l~~aG~ 149 (503)
|||||||+||+|++.++.+.+ +.|+||+|+|++||++|+++|++||++++.++.++. .+. .+++|+
T Consensus 80 PyItAsII~QLL~~~~l~~l~~~~~~gr~k~~~~tr~lti~~a~iqs~~~~~~~~~~~~~~~~~~~~~~~~i~l~L~~Gt 159 (462)
T PRK08568 80 PIVTAGIILQLLVGSKLINLDLSDPEDRALFQGLQKLLAIVMIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGG 159 (462)
T ss_pred HHHHHHHHHHHHhhCchheeccCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHHH
Confidence 999999999999877777765 468999999999999999999999999998765322 111 135665
Q ss_pred ------cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCc
Q psy5830 150 ------PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNL 223 (503)
Q Consensus 150 ------~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~l 223 (503)
||+++| ||+|||+|++|++|||+++||++++..+ ++++|++|.++++++...+++++...+ +|+++
T Consensus 160 ~i~~wL~E~Itk-~GiGnGiSliI~~gI~~~i~~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~----~r~~l 231 (462)
T PRK08568 160 ILIILLDELVSK-WGIGSGISLFILAGVSQTIFVGLFNWLT---GGQGLPVGFIPALFSAITSGNLTLALL----LTTRG 231 (462)
T ss_pred HHHHHHHHHHHh-cCcCcchHHHHHHHHHHHHHHHHhhhhc---ccCccccchHHHHHHHHhcCccchhhh----hcccc
Confidence 999999 9999999999999999999999988654 566799999999877544333333333 78899
Q ss_pred hhHHHHHHHHHHHHHHHhhcCeEEEeeceeccccCCcccceeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhhh
Q psy5830 224 PNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENG 303 (503)
Q Consensus 224 p~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~~g~~~~yPiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~~ 303 (503)
|++..++++++++++++|+|++|||||++|+|.+|.++.||+|+||+|+||+||||+++++|.+++
T Consensus 232 ~~l~~~~~~~~i~~~~v~~q~~~~~IPI~~~k~~g~~s~iPiKln~aGvmPiIFassll~~p~~i~-------------- 297 (462)
T PRK08568 232 LLLLGLITTIVIFLIVVYLESMRVEIPLSHGRVRGARGRYPLKFIYVSVLPVILVRALQANIQLFG-------------- 297 (462)
T ss_pred cHHHHHHHHHHHHHHheeEEeeEEEEEEEeccccCCCceeeEEecccCcHHHHHHHHHHHHHHHHH--------------
Confidence 999999999999999999999999999999997775543399999999999999999999999887
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCccccccc
Q psy5830 304 LMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILE 383 (503)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~~ 383 (503)
+++... . ++++++|.+. ..+|++++++|++||.++.+.+.
T Consensus 298 -----------------------------~~l~~~----~-~~~~~~~~~~------~~~~~~~l~~~~~~p~~~~~~~~ 337 (462)
T PRK08568 298 -----------------------------QLLQRL----G-IPILGTYDSS------GASPISGLAYYLSPPHSPYDWIQ 337 (462)
T ss_pred -----------------------------HHHhhc----C-chhhhhcccc------cccchhHHHHHhCCCcchhhhhc
Confidence 333211 1 2345566431 13477899999999998888888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch--hHHHHHhhhhhhhhhhHHHHHHHHHH
Q psy5830 384 DPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS--MIHELNRYIPTAAAFGGLCIGALSVL 461 (503)
Q Consensus 384 ~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~--t~~yL~k~i~~~t~~G~~~l~~ia~l 461 (503)
+|++.++|.++.+++|++||++|.+++|.||||+||||||||++|||+|||+ |++||+|+++|+|++||++++++|++
T Consensus 338 ~p~~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~diAe~Lkk~g~~IpGiRpG~~~t~~yL~~~i~r~t~~Ga~~l~~ia~l 417 (462)
T PRK08568 338 DPLRAIIYALFMIVLSILFAIFWVETTGLDPKTQARQLQNSGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVL 417 (462)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCcccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999995 89999999999999999999999999
Q ss_pred HHHHcccCcccchhHHHHHHHHHHHHHHHhhhh
Q psy5830 462 ADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSE 494 (503)
Q Consensus 462 p~llg~~g~GTsiLI~V~vi~~~~~qi~~e~~~ 494 (503)
|++++..|+|||+||+||+++|++||+++|...
T Consensus 418 p~~~~~~g~gtslLI~Vgv~~~~~~qi~~~~~~ 450 (462)
T PRK08568 418 ADLLGALGGGTGLLLTVSIVYQLYEEIAREQLM 450 (462)
T ss_pred HHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHH
Confidence 999998899999999999999999999999754
No 4
>COG0201 SecY Preprotein translocase subunit SecY [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.1e-82 Score=670.70 Aligned_cols=379 Identities=28% Similarity=0.468 Sum_probs=308.5
Q ss_pred HhhhCCCccCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcChhHHHH-----HH-hhc--CcccccccCch
Q psy5830 12 FCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIR-----VI-LAS--NRGTLMELGIS 83 (503)
Q Consensus 12 ~~~~lp~v~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~-----~i-~ag--~~~Slf~LGI~ 83 (503)
+.+.+|++.+|+.|.+++|||++||++++++||+|++||+||+|.++..|.+.+.+ |+ +|| +++|+|+|||+
T Consensus 2 ~~~~~~~~~~~~~~~~~l~kr~~fT~~~Livyrigs~IPvpGi~~~~~~~~~~~~~~~~~~n~~~GGal~~~SIfaLGI~ 81 (436)
T COG0201 2 LLPLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLILFNMFSGGALSRGSIFALGIM 81 (436)
T ss_pred cchhhHHHhcchhccHHHHHHHHHHHHHHHHHHHhCcCcCCCCCHHHHHHHHHHhhhhHHHHHhcccccccchHHHHccH
Confidence 45689999999878899999999999999999999999999999987777666655 44 555 79999999999
Q ss_pred hHHhHHHHHHHHh-hch-hcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccC---C----CCc--------ee
Q psy5830 84 PIVTSGLIMQLLA-GAK-LIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYG---D----PSE--------IG 145 (503)
Q Consensus 84 PyItAsIi~QLL~-~~k-l~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~---~----~~~--------l~ 145 (503)
||||||||||||+ ..+ +.|++ |+|+||+|+|++|||+|+++|++||++++..+.+. + +.. .+
T Consensus 82 PyITASII~QLL~~~~p~l~~l~k~~e~gR~k~~~~tRyltlvla~iQa~~~~~~~~~~~~~~~~~~~~~~~~~l~il~L 161 (436)
T COG0201 82 PYITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRYLTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQL 161 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchHHHHHHHHHH
Confidence 9999999999994 442 33344 35699999999999999999999999999887531 1 111 13
Q ss_pred eecc------cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHh
Q psy5830 146 AAGV------PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFY 219 (503)
Q Consensus 146 ~aG~------~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~ 219 (503)
++|+ ||+++| ||+|||+||||++||++++|+++++... ..+.. .. +
T Consensus 162 ~~Gt~~lmwLgE~Itk-~GIGnGiSLiIfagI~~~lp~~~~~~~~-----------~~~~~--------~~--------~ 213 (436)
T COG0201 162 TAGTMFLMWLGEQITK-RGIGNGISLIIFAGIVASLPSAIFGIIG-----------ALPTG--------AL--------F 213 (436)
T ss_pred HHHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHhHHHHHHHHH-----------HHhcc--------hh--------H
Confidence 5665 999999 9999999999999999999999886421 11110 00 0
Q ss_pred hcCchhHHHHHHHHHHHHHHHhhcCeEEEeeceeccc---cCCcccceeccccccChhHHHHHHHHHHHHHHhhccCCcc
Q psy5830 220 RQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARY---RGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSL 296 (503)
Q Consensus 220 ~~~lp~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~---~g~~~~yPiKln~aGvmPiIfasall~~p~~i~~~~~~~~ 296 (503)
.+.+.+++.++.+++++++++|+|++|||||+||+|+ +|.++.+|+|+||+||||+||||+++++|.+++
T Consensus 214 ~~~l~~l~~~~~~l~ii~~vvyve~~~r~IPI~y~~~~~~~g~~s~lPlKln~agvIPvIfassll~~p~~i~------- 286 (436)
T COG0201 214 LSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYAKRQSYRGQSSYLPLKLNYAGVIPVIFASSLLLFPSTIA------- 286 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheEEEeehhhhhhhhcCCcCceeeeEeeccCChHHHHHHHHHHHHHHHH-------
Confidence 0001235677788888999999999999999999994 555544499999999999999999999999988
Q ss_pred chhhhhhhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCC
Q psy5830 297 STYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPE 376 (503)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~ 376 (503)
+++. ++ ++.+|.+|+.
T Consensus 287 ------------------------------------~~l~----~~------------------------~~~~~~~~~~ 302 (436)
T COG0201 287 ------------------------------------QFLG----NG------------------------GLAYYLSPLT 302 (436)
T ss_pred ------------------------------------HHhc----CC------------------------Cccccccchh
Confidence 3221 00 0111122222
Q ss_pred ccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch-hHHHHHhhhhhhhhhhHH
Q psy5830 377 NLGHI--LEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS-MIHELNRYIPTAAAFGGL 453 (503)
Q Consensus 377 ~~~~~--~~~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~-t~~yL~k~i~~~t~~G~~ 453 (503)
++.+. .++|.|+.+|++++++||+||+.+.+ ||||+||||||+|.+|||+|||+ |+|||+|+++|+|++||+
T Consensus 303 ~i~~~l~~~~~~y~~~y~~lii~Fs~Fy~~i~~-----np~~~A~~lkksG~~IPGiRpg~~te~yL~rvi~rlt~~Ga~ 377 (436)
T COG0201 303 SISDALSPGSPVYIALYVVLIIFFSYFYTEIQF-----NPEEIAENLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGAL 377 (436)
T ss_pred hHHHhccCCcHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHH
Confidence 21111 25799999999999999999999998 99999999999999999999995 999999999999999999
Q ss_pred HHHHHHHHHHHHcccC------cccchhHHHHHHHHHHHHHHHhhhh
Q psy5830 454 CIGALSVLADFMGAIG------SGTGILLAVTIIYQYFEIFVKEQSE 494 (503)
Q Consensus 454 ~l~~ia~lp~llg~~g------~GTsiLI~V~vi~~~~~qi~~e~~~ 494 (503)
+++++|++|++++..+ ||||+||+|+|++|++||+++|...
T Consensus 378 ~l~~iailp~l~~~~~~~~~~~gGTslLI~V~V~l~~~~qi~~~l~~ 424 (436)
T COG0201 378 FLGLIAILPELLGTAGGVPFYFGGTSLLIVVGVALDTYEQIEAELLM 424 (436)
T ss_pred HHHHHHHHHHHHHHhcCCcccccCeeeeeehHHHHHHHHHHHHHHHH
Confidence 9999999999999877 9999999999999999999999743
No 5
>TIGR00967 3a0501s007 preprotein translocase, SecY subunit.
Probab=100.00 E-value=7.8e-78 Score=634.43 Aligned_cols=364 Identities=36% Similarity=0.577 Sum_probs=291.8
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCCccCCCCcCh--------hHHHHHHhhcCcccccccCchhHHhHHHHHHHHhh--ch
Q psy5830 30 REKVLWTAITLFIFLVCCQIPLFGIMSSDSADP--------FYWIRVILASNRGTLMELGISPIVTSGLIMQLLAG--AK 99 (503)
Q Consensus 30 ~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~--------~~~~~~i~ag~~~Slf~LGI~PyItAsIi~QLL~~--~k 99 (503)
|+|++||++++++||+|++||+||+|.+..+|+ +.+++...+.+++|+|+|||+|||||||+||+|+. .+
T Consensus 1 ~~ki~~Tl~~l~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~~~sgga~~~~slf~LGI~PyItAsIi~QLL~~~~~~ 80 (410)
T TIGR00967 1 REKLLFTLGLLVLFRIGTFIPVPGIDASAFQQDIQQNGIFNLLNLFSGGALNQGSIFALGISPYITASIIIQLLTGDVPP 80 (410)
T ss_pred CchHHHHHHHHHHHHHHccCCCCCCCHHHHhhhhccccHHHHHHHHhccccccccHHHHccHHHHHHHHHHHHHHhccCh
Confidence 689999999999999999999999998765554 33333334447999999999999999999999976 44
Q ss_pred hcccC--CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhccc---CCCCc--------eeeecc------ccccccccccc
Q psy5830 100 LIEVG--DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMY---GDPSE--------IGAAGV------PDDEQKGYGLG 160 (503)
Q Consensus 100 l~~~~--~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~---~~~~~--------l~~aG~------~e~~~kg~GiG 160 (503)
..+++ |+++||+|+|++||++|+++|++||++++..+.+ .+++. .+++|+ ||+++| ||+|
T Consensus 81 ~l~~~~~~g~~gr~k~~~~tr~lt~~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gs~~~~wL~e~it~-~GiG 159 (410)
T TIGR00967 81 LLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGMYGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITK-YGIG 159 (410)
T ss_pred HHHHHhhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCcc
Confidence 44443 2569999999999999999999999998833222 12211 145665 999999 9999
Q ss_pred CchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q psy5830 161 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVI 240 (503)
Q Consensus 161 nGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~lp~l~~~i~~v~v~~~vv 240 (503)
||+|++|++|||+++||++++..... +++.+.+.+++++ +|++..++++++++++++
T Consensus 160 nG~SliI~~gI~~~~~~~~~~~~~~~---------------------~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~v 216 (410)
T TIGR00967 160 NGISLLIFAGIIATIPSGLLQPTEVR---------------------QSKVRDLISFLQN--LPFLLYLIATIIVFAVVV 216 (410)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHh---------------------hhhccchhhHHHH--HHHHHHHHHHHHHHHHHh
Confidence 99999999999999999987654210 0111122233444 577788888899999999
Q ss_pred hhcCeEEEeeceeccccC----Ccccc-eeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhhhhHHHHHHHHHHH
Q psy5830 241 YFQGFRVDLPIKSARYRG----QYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLI 315 (503)
Q Consensus 241 ~~~~~~~~IPi~~~r~~g----~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (503)
|+|++|||||+||+|+++ ++++| |+|+||+|+||+||||+++++|++++
T Consensus 217 ~~~~~~~~IPi~~~~~~~~~~~~~~~~iPiKln~aGvmPiIfassll~~p~~i~-------------------------- 270 (410)
T TIGR00967 217 FVQQARRKIPIQSAKRQGGRRGSQSTYLPLKLNYAGVIPVIFASALLSNPATIS-------------------------- 270 (410)
T ss_pred eeeeeEEEEEEEEhhhhcCCCCCccceeeeEeeccccHHHHHHHHHHHHHHHHH--------------------------
Confidence 999999999999998753 25677 99999999999999999999999987
Q ss_pred HHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCcccccccchhHHHHHHHHH
Q psy5830 316 LLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFM 395 (503)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~~~p~~~ivY~i~i 395 (503)
+++...++. .|+.++|.++ ...+|+|.++|++++
T Consensus 271 -----------------~~~~~~~~~---------------------------~~~~~~~~~~--~~~~p~~~~~y~~li 304 (410)
T TIGR00967 271 -----------------QFLNSNQGG---------------------------AWFLNPILSL--SLSDPIGAILYLILI 304 (410)
T ss_pred -----------------HHhcCCcch---------------------------hHHHHHHHhc--CCcccHHHHHHHHHH
Confidence 222111000 0111112111 134789999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch-hHHHHHhhhhhhhhhhHHHHHHHHHHHHHHcccC-----
Q psy5830 396 LGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS-MIHELNRYIPTAAAFGGLCIGALSVLADFMGAIG----- 469 (503)
Q Consensus 396 i~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~-t~~yL~k~i~~~t~~G~~~l~~ia~lp~llg~~g----- 469 (503)
++||++|+...+ ||||+||||||+|++|||+|||+ |++||+|+++|+|++||++++++|++|++++..+
T Consensus 305 i~Fs~f~~~~~~-----~p~~iA~~lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~~p~l~~~~~~~~~~ 379 (410)
T TIGR00967 305 IFFSFFYVELQL-----NPEDMAKNLKKQGMFIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGAIGGLPTS 379 (410)
T ss_pred HHHHHHHHHHcc-----CHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999988777 99999999999999999999996 9999999999999999999999999999998654
Q ss_pred ---cccchhHHHHHHHHHHHHHHHhhhh
Q psy5830 470 ---SGTGILLAVTIIYQYFEIFVKEQSE 494 (503)
Q Consensus 470 ---~GTsiLI~V~vi~~~~~qi~~e~~~ 494 (503)
||||+||+||+++|++||+++|...
T Consensus 380 ~~~ggtsiLI~Vgv~~~~~~qi~~~~~~ 407 (410)
T TIGR00967 380 KGLGGTSLLIVVGVAIDTYKQLESYLIS 407 (410)
T ss_pred ccCchHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999754
No 6
>PRK09204 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=1.4e-76 Score=627.36 Aligned_cols=357 Identities=23% Similarity=0.390 Sum_probs=291.7
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCc-------ChhHHHHHHhhc---CcccccccCchhHHhHHHHHHH
Q psy5830 25 RKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA-------DPFYWIRVILAS---NRGTLMELGISPIVTSGLIMQL 94 (503)
Q Consensus 25 ~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~-------~~~~~~~~i~ag---~~~Slf~LGI~PyItAsIi~QL 94 (503)
+++++|+|++||++++++||+|++||+||+|.+..+ +++.+++++++| +++|+|+|||+|||||||+||+
T Consensus 10 ~~~~l~~ki~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~~~~~~~~~~~Gga~~~~slf~LGI~PyItAsIi~QL 89 (426)
T PRK09204 10 KIKELRKRILFTLGALIVFRIGSYIPVPGIDPAALAQLFDQQSGGILGLFNLFSGGALSRFSIFALGIMPYITASIIMQL 89 (426)
T ss_pred cchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHhhccccHHHHHHHHcccchhcccHHHhCcHHHHHHHHHHHH
Confidence 457899999999999999999999999999987542 267788887755 6999999999999999999999
Q ss_pred Hhhc--hhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhc--ccC------CC-Cc--------eeeecc-----
Q psy5830 95 LAGA--KLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTG--MYG------DP-SE--------IGAAGV----- 149 (503)
Q Consensus 95 L~~~--kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~--~~~------~~-~~--------l~~aG~----- 149 (503)
|++. ++.|.+ |+|+||+|+|++|||+|+++|++||+++++.. .++ +. +. .+++|+
T Consensus 90 L~~~ip~l~~l~kege~gr~k~~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~L~~Gs~i~~w 169 (426)
T PRK09204 90 LTVVIPKLEELKKEGEAGRRKINQYTRYLTVVLAFVQSIGIAAGLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMW 169 (426)
T ss_pred HHHHhhhHHHHhhccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccCCccHHHHHHHHHHHHHHHHHHHH
Confidence 9975 444443 35699999999999999999999999987542 221 11 11 135665
Q ss_pred -cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCchhHHH
Q psy5830 150 -PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMN 228 (503)
Q Consensus 150 -~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~lp~l~~ 228 (503)
||+++| ||+|||+|++|++|||+++|+++.+....... +. ..+ ...+..
T Consensus 170 L~e~It~-~GiGnGiSliI~~gI~~~ip~~~~~~~~~~~~------~~-~~~----------------------~~~~~~ 219 (426)
T PRK09204 170 LGEQITE-RGIGNGISLIIFAGIVAGLPSAIGQTFELART------GS-LSI----------------------LVFLLL 219 (426)
T ss_pred HHHHHhc-cCcccchHHHHHHHHHHHHHHHHHHHHHHhcc------Cc-chH----------------------HHHHHH
Confidence 999999 99999999999999999999987653211000 00 000 011344
Q ss_pred HHHHHHHHHHHHhhcCeEEEeeceeccc---c---CCcccc-eeccccccChhHHHHHHHHHHHHHHhhccCCccchhhh
Q psy5830 229 LLATVLVFAIVIYFQGFRVDLPIKSARY---R---GQYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLE 301 (503)
Q Consensus 229 ~i~~v~v~~~vv~~~~~~~~IPi~~~r~---~---g~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~ 301 (503)
++++++++++++|+|++|||||+||+|+ | +.+++| |+|+||+|+||+||||+++++|.+++
T Consensus 220 ~~~~~~~~~~~v~~~~~~~rIPi~~~~~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~------------ 287 (426)
T PRK09204 220 IVLFLAVIAFVVFVEQAQRRIPVQYAKRQVGRKMYGGQSSYLPLKVNMAGVIPVIFASSILLFPATIA------------ 287 (426)
T ss_pred HHHHHHHHHHHheeeeeEEEEEEEehhhhccccccCCCCeeeeeeecccCchHHHHHHHHHHHHHHHH------------
Confidence 6667788899999999999999999985 2 456789 99999999999999999999999987
Q ss_pred hhhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCccccc
Q psy5830 302 NGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHI 381 (503)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~ 381 (503)
++ ++++. |.+ .+.+|++|
T Consensus 288 -------------------------------~~----~~~~~-------~~~-------------~~~~~~~~------- 305 (426)
T PRK09204 288 -------------------------------QF----FGSGS-------WLQ-------------WIANYLSP------- 305 (426)
T ss_pred -------------------------------Hh----cCchH-------HHH-------------HHHHHhCC-------
Confidence 22 11110 111 13345553
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch-hHHHHHhhhhhhhhhhHHHHHHHHH
Q psy5830 382 LEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS-MIHELNRYIPTAAAFGGLCIGALSV 460 (503)
Q Consensus 382 ~~~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~-t~~yL~k~i~~~t~~G~~~l~~ia~ 460 (503)
.+|+|.++|++++++|++||+.+.+ ||||+||||||+|++|||+|||+ |+|||+|+++|+|++||++++++|+
T Consensus 306 -~~~~~~~~y~~lii~Fs~fy~~i~~-----~p~~iAe~l~k~g~~IpGiRpG~~T~~yL~~~i~r~t~~Ga~~l~~ia~ 379 (426)
T PRK09204 306 -GSPLYILLYALLIIFFTFFYTAIQF-----NPEEIAENLKKSGGFIPGIRPGEQTAEYLDKVLTRLTLVGAIYLAFIAL 379 (426)
T ss_pred -CChHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHCCCcccCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3689999999999999999999988 99999999999999999999995 9999999999999999999999999
Q ss_pred HHHHHcccC------cccchhHHHHHHHHHHHHHHHh
Q psy5830 461 LADFMGAIG------SGTGILLAVTIIYQYFEIFVKE 491 (503)
Q Consensus 461 lp~llg~~g------~GTsiLI~V~vi~~~~~qi~~e 491 (503)
+|++++..+ +|||+||+||+++|++||++..
T Consensus 380 ~p~~~~~~~~~~~~~ggTslLI~Vgv~l~~~~qi~~~ 416 (426)
T PRK09204 380 LPEILQNALGVPFYFGGTSLLIVVGVALDTMKQIESQ 416 (426)
T ss_pred HHHHHHHHcCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 999998765 8999999999999999998864
No 7
>CHL00161 secY preprotein translocase subunit SecY; Validated
Probab=100.00 E-value=4.5e-75 Score=614.46 Aligned_cols=359 Identities=21% Similarity=0.272 Sum_probs=289.6
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCC-----cChhHHHHHHhhc---CcccccccCchhHHhHHHHHHHHh
Q psy5830 25 RKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDS-----ADPFYWIRVILAS---NRGTLMELGISPIVTSGLIMQLLA 96 (503)
Q Consensus 25 ~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~-----~~~~~~~~~i~ag---~~~Slf~LGI~PyItAsIi~QLL~ 96 (503)
|++++|+|++||++++++||+|++||+||+|.+.. +|++.+++++++| +++|+|+|||+|||||||+||+|+
T Consensus 6 ~~~~l~~ri~~Tl~~L~iy~lg~~IPlpGv~~~~~~~~~~~~~~~~~~~~~sgg~~~~~slf~LGI~PyItAsII~QLl~ 85 (417)
T CHL00161 6 KKDELLNRLLFTLGLLLLIRLGTFIPVPGIDHTQLYPSLSNNPLLNLLNTFSGGGFFVIGLFALGILPYINASIIIQLLT 85 (417)
T ss_pred cCccHHHHHHHHHHHHHHHHHhccCCCCCcCHHHHHHhhccccHHHHHHHHcCCCcccCcHHHHCcHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999998752 3788899998888 489999999999999999999998
Q ss_pred hc--hhcccC--CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhccc--CCCCc--------eeeecc------ccccccc
Q psy5830 97 GA--KLIEVG--DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMY--GDPSE--------IGAAGV------PDDEQKG 156 (503)
Q Consensus 97 ~~--kl~~~~--~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~--~~~~~--------l~~aG~------~e~~~kg 156 (503)
.. ++.|.+ |+++||||+|++||++|+++|++||++++.+... .+++. .+++|+ ||+++|
T Consensus 86 ~~~p~l~~l~k~~g~~gr~k~~~~tr~ltl~la~iqa~~~~~~~~~~~~~~~~~~~~~~v~~L~~Gt~~~~wL~e~it~- 164 (417)
T CHL00161 86 SIIPSLEKLQKEEGEAGRRKINQYTRYLTLGWAIIQSIGISFWLKPYLFNWNLLLALEIVLALTSGSMIVLWLSELITE- 164 (417)
T ss_pred HHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 75 444433 2669999999999999999999999999876431 11111 145665 999999
Q ss_pred ccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCchhHHHHHHHHHHH
Q psy5830 157 YGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVF 236 (503)
Q Consensus 157 ~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~lp~l~~~i~~v~v~ 236 (503)
||+|||+|++|++|||+++|..+.+.... .+++... +..+..++++++++
T Consensus 165 ~GiGnGiSliI~~~I~~~~p~~~~~~~~~---------------------~~~~~~~---------~~~~~~~~~~~~vi 214 (417)
T CHL00161 165 KGLGNGSSLLIFFNIVSNLPKLLQSLLFS---------------------LSANITI---------LSILLLLFLFFITL 214 (417)
T ss_pred cCcCcchHHHHHHHHHHHHHHHHHHHHHH---------------------hccchhH---------HHHHHHHHHHHHHH
Confidence 99999999999999999999654321100 0000000 11133445667888
Q ss_pred HHHHhhcCeEEEeeceeccccC-----Ccccc-eeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhhhhHHHHHH
Q psy5830 237 AIVIYFQGFRVDLPIKSARYRG-----QYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVA 310 (503)
Q Consensus 237 ~~vv~~~~~~~~IPi~~~r~~g-----~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~~~~~~~~~ 310 (503)
++++++|++|||||++|+|+++ .+++| |+|+||+|+||+||||+++++|++++
T Consensus 215 ~~vv~~~~~~rrIPi~~~~~~~~~~~~~~~~ylPiKln~aGvmPiIfassll~~p~~i~--------------------- 273 (417)
T CHL00161 215 IGIIFLQEAIRKIPLISAKQLGKSSRLASNSYLPLRLNQAGVMPIIFASALLVLPGYLT--------------------- 273 (417)
T ss_pred HHHHHhhcceEEEEEEEhhhhccccccCccceeeeehhccCchHHHHHHHHHHHHHHHH---------------------
Confidence 9999999999999999998754 56799 99999999999999999999999988
Q ss_pred HHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCcccccccchhHHHH
Q psy5830 311 QHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAIL 390 (503)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~~~p~~~iv 390 (503)
++++..+.. .|. ....+++ ...++|.++
T Consensus 274 ----------------------~~~~~~~~~--------~~~--------------~~~~~~~--------~~~~~y~~~ 301 (417)
T CHL00161 274 ----------------------NILLNQFLL--------PLL--------------SLFLQLA--------SFKILYLVL 301 (417)
T ss_pred ----------------------HHhcccchh--------hHH--------------HHHhcCC--------cccHHHHHH
Confidence 332111100 010 0111222 236888999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCc-hhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHccc-
Q psy5830 391 YIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQ-SMIHELNRYIPTAAAFGGLCIGALSVLADFMGAI- 468 (503)
Q Consensus 391 Y~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg-~t~~yL~k~i~~~t~~G~~~l~~ia~lp~llg~~- 468 (503)
|++++++||++|+.+.+ ||||+||||||+|++|||+||| +|+|||+|+++|+|++||+|++++|++|++++..
T Consensus 302 y~~lii~Fs~f~~~i~~-----~p~~iA~~Lkk~g~~IpGvRpG~~T~~yL~~~i~~~t~~Ga~~l~~la~~p~l~~~~~ 376 (417)
T CHL00161 302 YFVLILFFSYFYSTIVL-----NPKDISENLQKMAVSIPGIRPGKATTKYLKKTLNRLTLLGALFLAFIALLPNLIESVL 376 (417)
T ss_pred HHHHHHHHHHHHHHHhc-----CHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhc
Confidence 99999999999998888 9999999999999999999999 5999999999999999999999999999999753
Q ss_pred ------C-cccchhHHHHHHHHHHHHHHHhh
Q psy5830 469 ------G-SGTGILLAVTIIYQYFEIFVKEQ 492 (503)
Q Consensus 469 ------g-~GTsiLI~V~vi~~~~~qi~~e~ 492 (503)
+ ||||+||+||+++|++||++...
T Consensus 377 ~~~~~~~~ggtslLI~Vgv~~~~~~qi~a~~ 407 (417)
T CHL00161 377 NLSVFKGLGTTSLLILVGVAIDTSRQIQTYL 407 (417)
T ss_pred CcccccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 4 79999999999999999998754
No 8
>PRK12907 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=3.5e-75 Score=616.60 Aligned_cols=360 Identities=21% Similarity=0.288 Sum_probs=280.1
Q ss_pred ChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCc----ChhHHHHHHhhc---CcccccccCchhHHhHHHHHHHHhhc
Q psy5830 26 KIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA----DPFYWIRVILAS---NRGTLMELGISPIVTSGLIMQLLAGA 98 (503)
Q Consensus 26 ~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~----~~~~~~~~i~ag---~~~Slf~LGI~PyItAsIi~QLL~~~ 98 (503)
++|+|+|++||++++++||+|++||+||+|.+..+ +.+..+.++|+| +++|+|+|||+|||||||+||||+..
T Consensus 11 ~~~lr~ril~Tl~il~iyrlG~~IPiPGi~~~~~~~~~~~~~~~~~~~fsGG~~~~~sifsLGI~PyItAsII~QLL~~~ 90 (434)
T PRK12907 11 VAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKVQDQANVLGMLNVFGGGALQHFSIFAVGITPYITASIIVQLLQMD 90 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHhhhhhhhHHHHHHHHhccccccChHHHHccHHHHHHHHHHHHHHhc
Confidence 47899999999999999999999999999875321 224556688888 69999999999999999999999765
Q ss_pred ------hhcccCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-c--C----CCCc--------eeeecc------cc
Q psy5830 99 ------KLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGM-Y--G----DPSE--------IGAAGV------PD 151 (503)
Q Consensus 99 ------kl~~~~~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~-~--~----~~~~--------l~~aG~------~e 151 (503)
|++|+| |+||+|+|++|||+|+++|++||+++++... . + +++. .+++|+ ||
T Consensus 91 ~~p~l~~l~keg--e~gr~k~~~~tR~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~aGt~~l~WL~e 168 (434)
T PRK12907 91 VIPKFSEWAKQG--EMGRKKSAQFTRYFTIILAFIQAIGMSYGFNNIAGGQLITDQSWTTYLFIATVLTAGTAFLLWLGE 168 (434)
T ss_pred cCccHHHHhhcC--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 4999999999999999999999999876432 1 1 0111 145775 99
Q ss_pred cccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCchhHHHHHH
Q psy5830 152 DEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLA 231 (503)
Q Consensus 152 ~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~lp~l~~~i~ 231 (503)
+++| ||+|||+|++|++||++++|..+.+........ .|.. .+ .+. ......+++
T Consensus 169 ~It~-~GIGnGiSliI~~gIv~~~p~~~~~~~~~~~~~----~~~~-~~----------~~~---------~~~~~~~~~ 223 (434)
T PRK12907 169 QITA-NGVGNGISMLIFAGLVAAIPNVANQIYLQQFQN----AGDQ-LF----------MHI---------IKMLLIGLV 223 (434)
T ss_pred HHhc-CCcCcccHHHHHHHHHHHHHHHHHHHHHHHhhc----cCch-hh----------hhH---------HHHHHHHHH
Confidence 9998 999999999999999999995543211000000 0000 00 000 001223334
Q ss_pred HHHHHHHHHhhcCeEEEeeceeccc-cC------Ccccc-eeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhhh
Q psy5830 232 TVLVFAIVIYFQGFRVDLPIKSARY-RG------QYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENG 303 (503)
Q Consensus 232 ~v~v~~~vv~~~~~~~~IPi~~~r~-~g------~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~~ 303 (503)
.+++++++||+|++|||||+||+|+ .+ .+++| |+|+||+||||+||||+++++|.+++
T Consensus 224 ~~~~i~~~v~v~~~~rrIPi~ya~r~~~~~~~~~~~~syiPlKvN~aGvmPiIFAssll~~p~~i~-------------- 289 (434)
T PRK12907 224 ILAIVVGVIYIQQAVRKIPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFLMTPRTIA-------------- 289 (434)
T ss_pred HHHHHHHHhheeeeeEEEEEEEchhhccccccCCCcCceeeeeEcccCChHHHHHHHHHHHHHHHH--------------
Confidence 4567788999999999999999965 22 35679 99999999999999999999999988
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCccccccc
Q psy5830 304 LMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILE 383 (503)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~~ 383 (503)
+++ +++.+.+++. .+++| .
T Consensus 290 -----------------------------~~~----~~~~~~~~~~--------------------~~~~~--------~ 308 (434)
T PRK12907 290 -----------------------------QLF----PDSSVSKWLV--------------------ANLDF--------A 308 (434)
T ss_pred -----------------------------HHh----CCChHHHHHH--------------------HHcCC--------C
Confidence 221 1111001111 11222 3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch-hHHHHHhhhhhhhhhhHHHHHHHHHHH
Q psy5830 384 DPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS-MIHELNRYIPTAAAFGGLCIGALSVLA 462 (503)
Q Consensus 384 ~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~-t~~yL~k~i~~~t~~G~~~l~~ia~lp 462 (503)
+|+|.++|++++++|||||+.+.+ ||||+||||||+|++|||+|||+ |++||+|+++|+|++||++++++|++|
T Consensus 309 ~~~~~~~y~~lii~Fs~fyt~i~~-----nP~~iAenL~k~G~~IPGiRPGk~T~~yL~~~i~rlt~~Gai~L~~ia~lP 383 (434)
T PRK12907 309 HPIGMTLYVGLIVAFTYFYAFIQV-----NPEQMAENLKKQNGYVPGIRPGKSTEQYVTKILYRLTFIGAIFLGAISILP 383 (434)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHCCCcCCCcCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 577899999999999999999988 99999999999999999999995 999999999999999999999999999
Q ss_pred HHHccc--------CcccchhHHHHHHHHHHHHHHHhh
Q psy5830 463 DFMGAI--------GSGTGILLAVTIIYQYFEIFVKEQ 492 (503)
Q Consensus 463 ~llg~~--------g~GTsiLI~V~vi~~~~~qi~~e~ 492 (503)
++++.. .||||+||+|||++|++||++...
T Consensus 384 ~i~~~~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~l 421 (434)
T PRK12907 384 LVFTKIATLPPSAQIGGTSLLIIVGVALETMKTLESQL 421 (434)
T ss_pred HHHHHHhCCCcccccchhhhhhhHHHHHHHHHHHHHHH
Confidence 998643 489999999999999999988643
No 9
>PRK12417 secY preprotein translocase subunit SecY; Reviewed
Probab=100.00 E-value=9e-74 Score=601.71 Aligned_cols=348 Identities=18% Similarity=0.245 Sum_probs=278.9
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcCh---hHHHHHHhhc---CcccccccCchhHHhHHHHHHHHhhc
Q psy5830 25 RKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADP---FYWIRVILAS---NRGTLMELGISPIVTSGLIMQLLAGA 98 (503)
Q Consensus 25 ~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~---~~~~~~i~ag---~~~Slf~LGI~PyItAsIi~QLL~~~ 98 (503)
+++|+|+|++||++++++||+|++||+||+|.+..+|+ +..+.+.++| +|+|+|+|||+|||||||+||+|+..
T Consensus 8 ~~~~l~~ki~~Tl~~l~iyrlG~~IPiPGi~~~~~~~~~~~~~~~~~~fsGG~~~~~slfsLGI~PyItAsII~QLL~~~ 87 (404)
T PRK12417 8 EYKIIYKKILFTCFILFIYILGSNISIPFVSYNDMLGGHESFLKIAAANTGGDLRTLNIFSLGLGPWMTSMIILQLFSYR 87 (404)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhccCcCCCCCHHHhcCccchHHHHHHHhcccccccCcHHHHccHHHHHHHHHHHHHHhC
Confidence 67889999999999999999999999999998755444 4445566666 58899999999999999999999987
Q ss_pred hhcccCC---ChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccC-CC--Cc------eeeecc------ccccccccccc
Q psy5830 99 KLIEVGD---TPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYG-DP--SE------IGAAGV------PDDEQKGYGLG 160 (503)
Q Consensus 99 kl~~~~~---~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~-~~--~~------l~~aG~------~e~~~kg~GiG 160 (503)
++.+.++ +++||+ |||+|+++|++||++++.++.+. .. .. ..++|+ ||++++ ||+|
T Consensus 88 ~~~~l~~~~kee~gr~-----~r~ltl~la~iQs~~~~~~~~~~~~~~~~~~~~~~l~L~aGt~~~~WL~E~it~-~GIG 161 (404)
T PRK12417 88 KRDGLMKQTIEEQHYR-----ERILTLIIAVIQSLAVILSLPSKERISQTNILLNTLILVTGTMFLVWLSDLNAR-YGIG 161 (404)
T ss_pred CCcchhhcChHHHHHH-----HHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc
Confidence 5444432 234453 79999999999999998775432 10 11 145775 999877 9999
Q ss_pred CchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCchh--HHHHHHHHHHHHH
Q psy5830 161 SGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPN--LMNLLATVLVFAI 238 (503)
Q Consensus 161 nGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~lp~--l~~~i~~v~v~~~ 238 (503)
|+|++|++|||+++|++..+.... .++ ...+++.+++++.
T Consensus 162 -G~SliI~~~Iv~~~p~~~~~~~~~-------------------------------------~~~~~~~~~~~~~~~i~~ 203 (404)
T PRK12417 162 -GPMPIVLVSMIKSIPQDVIEYIDA-------------------------------------SHIVIILLILLVIITLFF 203 (404)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHHHHHHHHH
Confidence 999999999999999987643200 011 1223333445667
Q ss_pred HHhhcCeEEEeeceeccc--cCCcccc-eeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhhhhHHHHHHHHHHH
Q psy5830 239 VIYFQGFRVDLPIKSARY--RGQYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLI 315 (503)
Q Consensus 239 vv~~~~~~~~IPi~~~r~--~g~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (503)
++|+|++|||||+||+++ ++.+++| |+|+|++|+||+||||+++++|++++
T Consensus 204 ~v~~~~~~rrIPi~~~~~~~~~~~~sylPiKlN~aGvmPiIfassll~~p~~i~-------------------------- 257 (404)
T PRK12417 204 LYFIELVEYRIPYNDIMNHNRFKMYSYLSIKLNPAGGMPIMYSMSLLVFPQYII-------------------------- 257 (404)
T ss_pred HHHHhheEEEEEEEEhhhhccCCCCcceeeeecccccHHHHHHHHHHHHHHHHH--------------------------
Confidence 999999999999999876 3356799 99999999999999999999999988
Q ss_pred HHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCcccccccchhHHHHHHHHH
Q psy5830 316 LLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFM 395 (503)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~~~p~~~ivY~i~i 395 (503)
++++..++++.+.+.. . .+++ .++|+|.++|++++
T Consensus 258 -----------------~~~~~~~~~~~~~~~~---~-----------------~~~~--------~~~~~~~~~y~~li 292 (404)
T PRK12417 258 -----------------ILILSIFPNNSGISAD---M-----------------DMLS--------FGSPLGVTVYLILQ 292 (404)
T ss_pred -----------------HHHhhcCCCcHHHHHH---H-----------------HHcC--------CCCcHHHHHHHHHH
Confidence 4443344443221110 0 1122 24788999999999
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCc-hhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHccc------
Q psy5830 396 LGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQ-SMIHELNRYIPTAAAFGGLCIGALSVLADFMGAI------ 468 (503)
Q Consensus 396 i~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg-~t~~yL~k~i~~~t~~G~~~l~~ia~lp~llg~~------ 468 (503)
++||+|||.+|+ ||||+||||||+|++|||+||| +|++||+|+++|+|++||+|++++|++|.+++..
T Consensus 293 i~fs~fys~i~~-----nP~diAe~lkk~g~~IpGiRPG~~T~~yL~~vi~r~t~~Gai~l~~ia~lP~~~~~~~~~~~~ 367 (404)
T PRK12417 293 FLLSYFFSFVNI-----NTKQIAKDMLKSGNYIPGVYPGKDTERYLNYIARRFSWFGALFVTVIAGIPLYFTLFDPHLST 367 (404)
T ss_pred HHHHHHHHHHhc-----CHHHHHHHHHHCCCcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 999999999999 9999999999999999999999 5999999999999999999999999999998532
Q ss_pred --CcccchhHHHHHHHHHHHHHHHhh
Q psy5830 469 --GSGTGILLAVTIIYQYFEIFVKEQ 492 (503)
Q Consensus 469 --g~GTsiLI~V~vi~~~~~qi~~e~ 492 (503)
-+|||+||+||+++|+.+|++...
T Consensus 368 ~~~ggtsllI~Vgv~ldt~~qi~s~l 393 (404)
T PRK12417 368 EIYFSGQFMMFVGMSFNIADEIRALL 393 (404)
T ss_pred ceeccchheehhhhHHHHHHHHHHHH
Confidence 279999999999999999988643
No 10
>TIGR02920 acc_sec_Y2 accessory Sec system translocase SecY2. Members of this family are restricted to the Firmicutes lineage (low-GC Gram-positive bacteria) and appear to be paralogous to, and much more divergent than, the preprotein translocase SecY. Members include the SecY2 protein of the accessory Sec system in Streptococcus gordonii, involved in export of the highly glycosylated platelet-binding protein GspB.
Probab=100.00 E-value=4e-71 Score=580.76 Aligned_cols=350 Identities=18% Similarity=0.276 Sum_probs=280.2
Q ss_pred hhHHHHHHHHHHHHHHHHcCcccCCCccCCC------CcChhHHHHHHhhcC--cccccccCchhHHhHHHHHHHHhhch
Q psy5830 28 QFREKVLWTAITLFIFLVCCQIPLFGIMSSD------SADPFYWIRVILASN--RGTLMELGISPIVTSGLIMQLLAGAK 99 (503)
Q Consensus 28 ~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~------~~~~~~~~~~i~ag~--~~Slf~LGI~PyItAsIi~QLL~~~k 99 (503)
.+|+|++||++++++||+|++||+||+|.+. .+|++.+++.++||+ +.|+|+|||+|||||||+||+|+..+
T Consensus 1 ~~~~ri~~Tl~~l~iyrlgs~IPlpGi~~~~~~~~~~~~~~l~~l~~~~gg~~~~~slfsLGI~PyItAsIi~QLL~~~~ 80 (395)
T TIGR02920 1 IIYKKILFTCFILIIYVLGSYIPIPFVEVSKQDMEGVKNSFFKIAIANTGGNLTTLSIFSLGLGPWMTSMIILQLFSFTK 80 (395)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCCCcChhhHHHhcccccHHHHHHHHhcCccccCcHHHhCcHHHHHHHHHHHHHHhCc
Confidence 3799999999999999999999999999864 246888888788886 55999999999999999999999866
Q ss_pred hcccCC-ChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccC-C---CCc-----eeeecc------cccccccccccCch
Q psy5830 100 LIEVGD-TPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYG-D---PSE-----IGAAGV------PDDEQKGYGLGSGI 163 (503)
Q Consensus 100 l~~~~~-~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~-~---~~~-----l~~aG~------~e~~~kg~GiGnGi 163 (503)
+.+.|+ .+++| ++.|||+|+++|++||+++++++.+. . +.. .+++|+ ||+++| ||+| |+
T Consensus 81 ~~~l~~~~~~~~---~~~tr~ltl~~a~iQs~~~~~~~~~~~~~~~~~~~~~vl~L~~Gt~iv~wL~E~it~-~GiG-G~ 155 (395)
T TIGR02920 81 SDGFDAQSPKEQ---QYRERFLTLIIAIIQGLAIIHSFTNKNGLSDFNMLLATLILVTGTCLLVWLADLNAK-YGIG-GS 155 (395)
T ss_pred CcchhhhCHHHh---hHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhC-CCcc-hH
Confidence 655553 22333 34599999999999999998765432 1 111 135665 999888 9999 99
Q ss_pred hHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhc
Q psy5830 164 SLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVIYFQ 243 (503)
Q Consensus 164 SLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~lp~l~~~i~~v~v~~~vv~~~ 243 (503)
|++|++|||+++|++.++..+. + .+.. .....+++++++++++++|
T Consensus 156 sllI~~~I~s~~~~~~~~~~~~--~-----~~~~---------------------------~~~~~~~~~~~i~~~v~~~ 201 (395)
T TIGR02920 156 MPIVLVSMLKNIPSNVFELFQM--S-----YIWL---------------------------IALLILLTLVALFLLAFIE 201 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--c-----hHHH---------------------------HHHHHHHHHHHHHHHHhee
Confidence 9999999999999987653311 0 0000 0122334455666789999
Q ss_pred CeEEEeeceeccc--cCCcccc-eeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhhhhHHHHHHHHHHHHHHhh
Q psy5830 244 GFRVDLPIKSARY--RGQYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVS 320 (503)
Q Consensus 244 ~~~~~IPi~~~r~--~g~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (503)
+++||||++|+++ |+.+++| |+|+||+|+||+||||+++++|++++
T Consensus 202 ~~~~rIpv~~~~~~~~~~~~~yiPiKln~aGvmPiIfassll~~p~~i~------------------------------- 250 (395)
T TIGR02920 202 RAEYRIPVNDISLHNRSNLMSYLPIKLNPAGGMMYMYVMSLLMLPQYII------------------------------- 250 (395)
T ss_pred cceEEEEEEEchhhccCCCCcccceEecccCcHHHHHHHHHHHHHHHHH-------------------------------
Confidence 9999999999975 5567899 99999999999999999999998776
Q ss_pred cccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCcccccccchhHHHHHHHHHHHHHH
Q psy5830 321 ATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCA 400 (503)
Q Consensus 321 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~~~p~~~ivY~i~ii~fs~ 400 (503)
+.++..++++.. +++|.. +++ ..+|+|.++|++++++||+
T Consensus 251 ------------~~l~~~~~~~~~---~~~~~~-----------------~~~--------~~~~~~~i~y~~lii~fs~ 290 (395)
T TIGR02920 251 ------------ILLGRIFPNSSL---INNWVF-----------------QFS--------FSSPVGILIYLILQMLLSY 290 (395)
T ss_pred ------------HHHHHHccCCch---HHHHhh-----------------ccC--------CcchHHHHHHHHHHHHHHH
Confidence 333333333311 112211 111 2478999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch-hHHHHHhhhhhhhhhhHHHHHHHHHHHHHHcc----c----Ccc
Q psy5830 401 FFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS-MIHELNRYIPTAAAFGGLCIGALSVLADFMGA----I----GSG 471 (503)
Q Consensus 401 ~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~-t~~yL~k~i~~~t~~G~~~l~~ia~lp~llg~----~----g~G 471 (503)
|||.+|+ ||||+||||||+|++|||+|||+ |+|||+|+++|+|++||++++++|++|.+++. . .+|
T Consensus 291 fys~i~~-----nP~diA~~Lkk~g~~IpGiRpG~~T~~yL~~~i~~~t~~Gai~l~~ia~lP~~~~~~~~~~~~~~~gg 365 (395)
T TIGR02920 291 FFTFVNI-----NPKEISKSFRKSGNYIPGIAPGKDTQRYLNRLARRFCWFGGVFNAFQLGIPLYFALFVPHLLTEAYIP 365 (395)
T ss_pred HHHHheE-----CHHHHHHHHHHCCCCccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeehh
Confidence 9999999 99999999999999999999995 99999999999999999999999999999852 2 278
Q ss_pred cchhHHHHHHHHHHHHHHHhh
Q psy5830 472 TGILLAVTIIYQYFEIFVKEQ 492 (503)
Q Consensus 472 TsiLI~V~vi~~~~~qi~~e~ 492 (503)
||+||+|||++|+++|++...
T Consensus 366 tsllI~vgv~ldt~~qi~~~~ 386 (395)
T TIGR02920 366 GQFMMITGMSFNIADEIRTIL 386 (395)
T ss_pred hhhhhhhhhHHhHHHHHHHHH
Confidence 999999999999999998754
No 11
>PF00344 SecY: SecY translocase; InterPro: IPR002208 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The eubacterial secY protein [] interacts with the signal sequences of secretory proteins as well as with two other components of the protein translocation system: secA and secE. SecY is an integral plasma membrane protein of 419 to 492 amino acid residues that apparently contains 10 transmembrane (TM), 6 cytoplasmic and 5 periplasmic regions. Cytoplasmic regions 2 and 3, and TM domains 1, 2, 4, 5, 7 and 10 are well conserved: the conserved cytoplasmic regions are believed to interact with cytoplasmic secretion factors, while the TM domains may participate in protein export []. Homologs of secY are found in archaebacteria []. SecY is also encoded in the chloroplast genome of some algae [] where it could be involved in a prokaryotic-like protein export system across the two membranes of the chloroplast endoplasmic reticulum (CER) which is present in chromophyte and cryptophyte algae.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0015031 protein transport, 0016020 membrane; PDB: 3J01_A 2ZJS_Y 2ZQP_Y 2WWA_A 2WW9_A 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A ....
Probab=100.00 E-value=3.6e-62 Score=505.17 Aligned_cols=310 Identities=32% Similarity=0.520 Sum_probs=249.9
Q ss_pred cccccCchhHHhHHHHHHHHhhchhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-cCCC---------Cc-
Q psy5830 76 TLMELGISPIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGM-YGDP---------SE- 143 (503)
Q Consensus 76 Slf~LGI~PyItAsIi~QLL~~~kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~-~~~~---------~~- 143 (503)
|+|+|||+|||||||+||++...+++|.+ ++|+||+|++++||++|+++|++||++++.... ++.. +.
T Consensus 1 SlfsLGI~PyitAsIi~Qll~~~~l~~l~~~g~~~~~~~~~~tr~ltl~~a~iqa~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PF00344_consen 1 SLFSLGIGPYITASIIMQLLIIPKLIKLQKEGEEGRKKLNRYTRYLTLILAVIQAIGIVLSLGYYGSVSPLILSSGSGFI 80 (346)
T ss_dssp BTTSSTTHHHHHHHHHHHHHHSSSSSSHSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSSTTC-TTSTTCHH
T ss_pred ChHhhccHHHHHHHHHHHHHhcccHHHhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchHHH
Confidence 79999999999999999999877888877 478999999999999999999999999996533 3321 11
Q ss_pred -------eeeecc------cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhH
Q psy5830 144 -------IGAAGV------PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDK 210 (503)
Q Consensus 144 -------l~~aG~------~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~ 210 (503)
.+++|+ ||+++| ||+|||+|++|++|||+++||++.+.......+.....+
T Consensus 81 ~~~~i~l~L~~G~~i~~wL~e~it~-~GiGnG~SliI~~~I~~~~~~~i~~~~~~~~~~~~~~~~--------------- 144 (346)
T PF00344_consen 81 NYLLIVLQLVAGSMILIWLSELITK-YGIGNGISLIIFAGIISNLPWSIINLFQLLSNKAGSLSN--------------- 144 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-CSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTSSS---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---------------
Confidence 135665 999999 999999999999999999999854432110000000011
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHHHHHHhhcCeEEEeeceeccc-c--CCcccc-eeccccccChhHHHHHHHHHHHH
Q psy5830 211 VRALREAFYRQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARY-R--GQYSSY-PIKLFYTSNIPIILQSALVSNLC 286 (503)
Q Consensus 211 ~~~i~~~~~~~~lp~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~-~--g~~~~y-PiKln~aGvmPiIfasall~~p~ 286 (503)
.+..+..++++++++++++|+|++|||||++|+|. . ..+++| |+|+||+|+||+||+++++++|+
T Consensus 145 -----------~~~~l~~~~~~l~~~~~~v~l~~~~~rIPi~~~~~~~~~~~~~~ylPikln~aG~mPiifa~sll~~p~ 213 (346)
T PF00344_consen 145 -----------ALFLLIILIITLVVIALVVYLQEAERRIPIQYARIVNSSRGQSSYLPIKLNYAGVMPIIFASSLLSLPQ 213 (346)
T ss_dssp -----------THHHHHHHHHHHHHHHHHHHHHHCEEEECEBBSSSB--SSSBCSCEEEETTSSTHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHHHHhheeeeeeEEEEEEEeccccccCcccceeeeeeccccccchHHHHHHHHHHHH
Confidence 11224567788888999999999999999999988 2 244677 99999999999999999999999
Q ss_pred HHhhccCCccchhhhhhhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCccccc
Q psy5830 287 LLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIG 366 (503)
Q Consensus 287 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 366 (503)
+++ +.++..+++ ..+.+
T Consensus 214 ~i~-------------------------------------------~~l~~~~~~--------------------~~~~~ 230 (346)
T PF00344_consen 214 YIA-------------------------------------------QFLNSQFPN--------------------NWLVS 230 (346)
T ss_dssp HHH-------------------------------------------HHCTTCSCC--------------------SCCSS
T ss_pred HHH-------------------------------------------HhccCCCcc--------------------ccHHH
Confidence 987 333222111 12345
Q ss_pred ccccccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch-hHHHHHhhhh
Q psy5830 367 GLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS-MIHELNRYIP 445 (503)
Q Consensus 367 gl~~~lspp~~~~~~~~~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~-t~~yL~k~i~ 445 (503)
++++|++. ....++|.++|.+++++|+++|+...+ ||||+||||||+|++|||+|||+ |+|||+|+++
T Consensus 231 ~i~~~~~~------~~~~~~y~~~~~~li~~Fs~~~~~~~~-----~p~~iA~~lkk~g~~I~GirpG~~T~~yL~~~i~ 299 (346)
T PF00344_consen 231 GIAYYFSQ------NLNSPLYIIFYLILIILFSYFFSFINI-----NPKDIAENLKKSGDYIPGIRPGKPTEKYLNKVIP 299 (346)
T ss_dssp CCHHHTSS------SHHHHHHHHHHHHHHHHHHHHHHTSSS-----HHHHHHHHCHCTTSSSSTCTTSCHHHHHHHHHHH
T ss_pred HHHHHhcc------CcchHHHHHHHHHHHHHHHHHHhhccC-----CHHHHHHHHHHhCCEeCCCCCChhHHHHHHHHHH
Confidence 67777741 235688888888888888888876666 99999999999999999999995 9999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHcccC------cccchhHHHHHHHHHHH
Q psy5830 446 TAAAFGGLCIGALSVLADFMGAIG------SGTGILLAVTIIYQYFE 486 (503)
Q Consensus 446 ~~t~~G~~~l~~ia~lp~llg~~g------~GTsiLI~V~vi~~~~~ 486 (503)
|++++||++++++|++|++++..+ +|||+||+||+++|++|
T Consensus 300 ~~~~~G~~~l~~ia~~p~~~~~~~~~~~~~~gtslli~V~v~~~~~~ 346 (346)
T PF00344_consen 300 RLSFLGALFLALIAVLPLIFGLFGGSSLFFGGTSLLIIVGVIIDTYE 346 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSCSCCCTHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999988 99999999999999986
No 12
>PF10559 Plug_translocon: Plug domain of Sec61p; InterPro: IPR019561 The Sec61/SecY translocon mediates translocation of proteins across the membrane and integration of membrane proteins into the lipid bilayer. The structure of the translocon revealed a plug domain blocking the pore on the lumenal side. The plug is unlikely to be important for sealing the translocation pore in yeast but it plays a role in stabilising Sec61p during translocon formation. The domain runs from residues 52-74 []. ; PDB: 2YXR_A 1RHZ_A 3KCR_A 3DKN_A 2YXQ_A 1RH5_A 3BO1_A 3BO0_A 2WWA_A 2WW9_A ....
Probab=98.20 E-value=6.5e-07 Score=63.80 Aligned_cols=35 Identities=57% Similarity=1.190 Sum_probs=31.2
Q ss_pred HHHHHcCcccCCCccCCCCcChhHHHHHHhhcCcc
Q psy5830 41 FIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRG 75 (503)
Q Consensus 41 ~iy~lg~~IPlpGi~~~~~~~~~~~~~~i~ag~~~ 75 (503)
++|+++++|||+|++.....|||+|+|.+|||++|
T Consensus 1 ilYl~ls~ipLyG~~~~~~~D~f~~~R~i~As~~G 35 (35)
T PF10559_consen 1 ILYLFLSQIPLYGLQSASSSDPFYWLRAIFASNRG 35 (35)
T ss_dssp HHHHHHHHSB-STSTTTTSSCCHTTTHHHHTSSTT
T ss_pred CEEEEeeCCccccccCCCcCCHHHHHHHHHcccCC
Confidence 58999999999999777889999999999999875
No 13
>PF04923 Ninjurin: Ninjurin ; InterPro: IPR007007 Ninjurin (nerve injury-induced protein) is involved in nerve regeneration and in the formation of some tissues [].; GO: 0007155 cell adhesion, 0042246 tissue regeneration, 0016021 integral to membrane
Probab=35.79 E-value=63 Score=28.62 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=26.9
Q ss_pred hhHHhHHHHHHHHhhchh---cccC-CChhhhhhhhhhHHHHHHHHHHH
Q psy5830 83 SPIVTSGLIMQLLAGAKL---IEVG-DTPKDRALFNGAQKLFGMVITVG 127 (503)
Q Consensus 83 ~PyItAsIi~QLL~~~kl---~~~~-~~~~gr~k~~~~tr~lti~la~i 127 (503)
.=.++.||++|++.+.-+ -+.+ ++++.+++.+....+.+++..++
T Consensus 45 l~Li~iSlvLQv~vgilli~~~~~n~~~~~~~~~~~~lnn~~~~~v~ii 93 (104)
T PF04923_consen 45 LTLISISLVLQVVVGILLIFISRYNINKPEKQRRANRLNNWATILVFII 93 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999998721 1122 23455666666666665554443
No 14
>PRK08568 preprotein translocase subunit SecY; Reviewed
Probab=26.19 E-value=2e+02 Score=31.90 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=57.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHHcCcccceec--CchhHHHHHhhhhhhhhhhHHHHHHHH
Q psy5830 383 EDPIHAILYIVFMLGSCAFFSKTW-IEVSGSSAKDVAKQLKEQQMVMRGHR--EQSMIHELNRYIPTAAAFGGLCIGALS 459 (503)
Q Consensus 383 ~~p~~~ivY~i~ii~fs~~fs~~~-i~~sg~~p~diA~~Lkk~g~~IpGiR--pg~t~~yL~k~i~~~t~~G~~~l~~ia 459 (503)
...+|.++|++++++||++|+.+. +|-.+ =+|+..||=----+.=||-+ ....++++.|.--.=+++=+++.++-.
T Consensus 341 ~~vvY~~~~~~l~i~Fs~fy~~i~g~~p~d-iAe~Lkk~g~~IpGiRpG~~~t~~yL~~~i~r~t~~Ga~~l~~ia~lp~ 419 (462)
T PRK08568 341 RAIIYALFMIVLSILFAIFWVETTGLDPKT-QARQLQNSGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVLAD 419 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-HHHHHHHcCCcccCcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999999999999888 65443 34555544433333444443 223556666654333333332222222
Q ss_pred HHHHHHcccCcccchhHHHHHHHHHHHHHHHhhhh
Q psy5830 460 VLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSE 494 (503)
Q Consensus 460 ~lp~llg~~g~GTsiLI~V~vi~~~~~qi~~e~~~ 494 (503)
.+...-+..+---..-++....-+...+...|+-+
T Consensus 420 ~~~~~g~gtslLI~Vgv~~~~~~qi~~~~~~~~Y~ 454 (462)
T PRK08568 420 LLGALGGGTGLLLTVSIVYQLYEEIAREQLMEMYP 454 (462)
T ss_pred HHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 22222222220001124455555555555555443
No 15
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=23.56 E-value=4.2e+02 Score=25.80 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch--hHHHHHhh
Q psy5830 384 DPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS--MIHELNRY 443 (503)
Q Consensus 384 ~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~--t~~yL~k~ 443 (503)
.-++..++.+...++|.++++-+. .+||+|++. =|..||.+ +.+-++.-
T Consensus 57 ~gl~~a~~gl~~l~~si~~~fry~--------Rlar~L~~~---~~~~~P~k~~~~~~l~~G 107 (183)
T PF12263_consen 57 IGLFLAICGLVALFFSIFWSFRYT--------RLARRLRSP---NPAKRPSKADVVRLLRIG 107 (183)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHhccc---CCCCCCCHHHHHHHHHHH
Confidence 356777888889999999998664 899999954 67889973 56665543
No 16
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=23.00 E-value=2.9e+02 Score=31.49 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=39.2
Q ss_pred HHHHHhhhhhhhhhhHHHHHHHHHHHHHHcccCcccch-hHHHHHHHHHHHHHHHhhhh
Q psy5830 437 IHELNRYIPTAAAFGGLCIGALSVLADFMGAIGSGTGI-LLAVTIIYQYFEIFVKEQSE 494 (503)
Q Consensus 437 ~~yL~k~i~~~t~~G~~~l~~ia~lp~llg~~g~GTsi-LI~V~vi~~~~~qi~~e~~~ 494 (503)
.++++|....++-+-|-.+.++++.+..+ .||+|+ |-+||+++-.-+++.++-..
T Consensus 307 AEE~qK~mgCvgKIlG~vitaVsvvAAvf---TGGASLAlAaVGlAL~aaDeI~qa~TG 362 (593)
T PRK15374 307 AEETNRIMGCIGKVLGALLTIVSVVAAVF---TGGASLALAAVGLAVMVADEIVKAATG 362 (593)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45677777777777777676666665544 467776 77899999888887776544
Done!