Query psy5830
Match_columns 503
No_of_seqs 146 out of 1118
Neff 5.4
Searched_HMMs 29240
Date Fri Aug 16 19:02:04 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5830.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5830hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wwb_A Protein transport prote 100.0 3E-106 9E-111 861.2 32.1 459 1-503 1-476 (476)
2 2ww9_A SEC sixty-one protein h 100.0 1E-102 4E-107 835.5 25.4 456 1-501 2-480 (490)
3 3mp7_A Preprotein translocase 100.0 8.5E-98 3E-102 796.3 19.2 426 4-494 2-456 (482)
4 1rh5_A Preprotein translocase 100.0 1.5E-92 5.1E-97 748.3 36.8 406 6-494 1-424 (436)
5 3dl8_G Preprotein translocase 100.0 5.8E-82 2E-86 666.6 22.0 362 20-493 6-419 (429)
6 2zjs_Y Preprotein translocase 100.0 3.7E-81 1.3E-85 660.7 24.3 356 25-493 10-420 (434)
7 3j01_A Preprotein translocase 100.0 2.2E-81 7.4E-86 663.0 22.5 364 22-492 5-417 (435)
8 3din_C Preprotein translocase 100.0 2.5E-81 8.6E-86 661.8 22.7 355 20-493 6-414 (431)
9 2nsc_A Trigger factor, TF; cha 35.8 18 0.00062 30.5 2.3 26 418-444 32-58 (109)
10 2d3o_1 Trigger factor, TF; rib 33.2 17 0.00057 30.8 1.7 19 416-435 29-47 (112)
11 1rh5_A Preprotein translocase 32.1 13 0.00043 39.3 0.9 24 385-408 317-341 (436)
12 1p9y_A Trigger factor, TF; alp 29.0 27 0.00092 30.0 2.3 25 419-444 36-61 (121)
13 3mp7_A Preprotein translocase 25.7 27 0.00092 37.2 2.1 59 384-443 348-409 (482)
No 1
>2wwb_A Protein transport protein SEC61 subunit alpha ISO; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=100.00 E-value=2.7e-106 Score=861.16 Aligned_cols=459 Identities=86% Similarity=1.384 Sum_probs=410.9
Q ss_pred CCcchHhhHhHHhhhCCCccCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcChhHHHHHHhhcCccccccc
Q psy5830 1 MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMEL 80 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~lp~v~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~i~ag~~~Slf~L 80 (503)
|++|++|.+||+.+++|||++|+ ||+|+|||++||++++++||+|+|||+||+|.++..|++.+++++||++++|+|+|
T Consensus 1 m~~~~l~~~~p~~~~lP~v~~P~-~~~~lr~kil~Tl~~L~iyrigs~IPlpGi~~~~~~~~~~~~~~~fa~~~~SifaL 79 (476)
T 2wwb_A 1 MAIKFLEVIKPFCVILPEIQKPE-RKIQFKEKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWMRVILASNRGTLMEL 79 (476)
T ss_dssp CCSCCCCCCHHHHHHSCCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHSCCCSSSTTTCSCCCHHHHHHHCSSCSSSCSS
T ss_pred CCchHHHHHHHHHHhCCCCCCCC-cCccHHHHHHHHHHHHHHHHHHccCCCCCcChhhccccHHHHHHHHccccccHHHH
Confidence 78999999999999999999999 99999999999999999999999999999999877899999999999999999999
Q ss_pred CchhHHhHHHHHHHHhhchhcccCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccCCC---Cc--------eeeecc
Q psy5830 81 GISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDP---SE--------IGAAGV 149 (503)
Q Consensus 81 GI~PyItAsIi~QLL~~~kl~~~~~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~~~---~~--------l~~aG~ 149 (503)
||+||||||||||||++.++.+.++..+||+|+|++|||+|+++|++||++++.++.++.. +. .+++|+
T Consensus 80 GI~PyItASII~QLL~g~~iip~~~~l~gR~k~~~~tR~lti~la~iQa~~~v~~g~~~~~~~~~~~~~~~ivl~L~~Gt 159 (476)
T 2wwb_A 80 GISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMIITIGQSIVYVMTGMYGDPSEMGAGICLLITIQLFVAG 159 (476)
T ss_dssp SSTHHHHHHHHHHHHHHHCCCSCCSSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSCSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHH
Confidence 9999999999999998877777664223999999999999999999999999885445421 11 134665
Q ss_pred ------cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCc
Q psy5830 150 ------PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNL 223 (503)
Q Consensus 150 ------~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~l 223 (503)
||+++||||+|||+||||++|||++++|+.|+|.+.+.++|.|++|++.++++.+.+++++.++++++++|.++
T Consensus 160 ~~lmwL~E~It~g~GiGnGiSLiI~agI~~~l~~~~f~p~~~~~~~~~e~~G~i~~~~~~~~~~~~~~~~l~~~~~r~~l 239 (476)
T 2wwb_A 160 LIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGMEFEGAIIALFHLLATRTDKVRALREAFYRQNL 239 (476)
T ss_dssp HHHHHHHHHHHTTTCSSCSHHHHHHHHHHHHHHHHHTCCSSCSCCCSCCTTTTCCCHHHHHHHTCTTSSSSSSCSSSSSH
T ss_pred HHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHhcCcccccccccchhHHHHHHHHHHHhcccccccchhhhhhcccc
Confidence 99999999999999999999999999999999987777788899999988888776677777888889999998
Q ss_pred hhHHHHHHHHHHHHHHHhhcCeEEEeeceeccccCCcccceeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhhh
Q psy5830 224 PNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENG 303 (503)
Q Consensus 224 p~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~~g~~~~yPiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~~ 303 (503)
|++..+++++++++++||+|++|||||+||+|.+|+++.||+|+||+|+||+||||+++++|++++
T Consensus 240 ~~~~~ll~~~~v~~~vV~~q~~~rrIPv~yak~~g~~~~~PiKln~aGviPiIfassll~~p~~i~-------------- 305 (476)
T 2wwb_A 240 PNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVIS-------------- 305 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCBCCCCCBCSSSSBCSCCCBCTTTSSHHHHHHHHHHHHHHHHHH--------------
T ss_pred chHHHHHHHHHHHhheeEEEEEEEEEEEEecccCCccceeeeeeccccchHHHHHHHHHHHHHHHH--------------
Confidence 888888888889999999999999999999997666655699999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCccccccc
Q psy5830 304 LMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILE 383 (503)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~~ 383 (503)
++++.+++++..+++++.|.+...+++++++|++|+++|++||.++.+.+.
T Consensus 306 -----------------------------~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~l~~p~~~~~~~~ 356 (476)
T 2wwb_A 306 -----------------------------QMLSARFSGNLLVSLLGTWSDTSSGGPARAYPVGGLCHYLSPPESFGSVLE 356 (476)
T ss_dssp -----------------------------HHHHHHTSCCSCHHHHCSSSTTCSCTTSSSCCSSSHHHHTSCCSSSSSCCC
T ss_pred -----------------------------HHHhhcCCCcchhhhhhhhhhccccccccccccHHHHHHcCCcchhhhhcc
Confidence 555444444444456677754321223567899999999999998888888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCchhHHHHHhhhhhhhhhhHHHHHHHHHHHH
Q psy5830 384 DPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLAD 463 (503)
Q Consensus 384 ~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~t~~yL~k~i~~~t~~G~~~l~~ia~lp~ 463 (503)
+|+|.++|++++++||+||++.|++++|.||||+||||||+|++|||+||.+|+|||+|+++|+|++||+|++++|++|+
T Consensus 357 ~p~~~~iY~~lii~f~~fyt~~Wv~i~g~np~dvA~~Lkk~G~~IpGiRp~~T~~yL~~vi~rit~~Ga~~l~~lavlp~ 436 (476)
T 2wwb_A 357 DPVHAVVYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETSMVHELNRYIPTAAAFGGLCIGALSVLAD 436 (476)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTTCCCCTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999669999999999999999999999999999
Q ss_pred HHcccCcccchhHHHHHHHHHHHHHHHhhhhcCcccccCC
Q psy5830 464 FMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTLLF 503 (503)
Q Consensus 464 llg~~g~GTsiLI~V~vi~~~~~qi~~e~~~~~~~~~~~~ 503 (503)
+++.++||||+||+||++++++||++||+.|++.|+.++|
T Consensus 437 ~l~~~~gGTslLI~Vgv~~~~~e~i~~e~~~~~~~~~~~~ 476 (476)
T 2wwb_A 437 FLGAIGSGTGILLAVTIIYQYFEIFVKEQSEVGSMGALLF 476 (476)
T ss_dssp HHCCSSCHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCSCC
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence 9988889999999999999999999999999888988876
No 2
>2ww9_A SEC sixty-one protein homolog; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_A
Probab=100.00 E-value=1.1e-102 Score=835.48 Aligned_cols=456 Identities=30% Similarity=0.556 Sum_probs=395.9
Q ss_pred CCcchHhhHhHHhhhCCCccCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCC---CCcChhHHHHHHhhcCcccc
Q psy5830 1 MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSS---DSADPFYWIRVILASNRGTL 77 (503)
Q Consensus 1 ~~~~~~~~~~~~~~~lp~v~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~---~~~~~~~~~~~i~ag~~~Sl 77 (503)
+|+|++|.+||+.+++|||++|+ |++|+|||++||++++++||+ +|||+||+|.+ +..|++.+++.++|++++|+
T Consensus 2 ~~~~~~~~~~p~~~~lPev~~P~-~~~~lr~Kil~Tl~~L~iyri-s~IPlpGi~~~~~~~~~~~~~~~~~~~a~~~~si 79 (490)
T 2ww9_A 2 SGFRLIDIVKPILPILPEVELPF-EKLPFDDKIVYTIFAGLIYLF-AQFPLVGLPKATTPNVNDPIYFLRGVFGCEPRTL 79 (490)
T ss_dssp CCSCCCCCCCSSGGGSCCCCCCC-CCCCSHHHHHHHHHHHHHTTC-CSSCCSCHHHHTTTCSSCCCTTTHHHHTCCSSST
T ss_pred ccchHHHHHHHHHHhCCcccCCC-CCccHHHHHHHHHHHHHHHHH-HhcCCCCcCHHHHhcccCHHHHHHHHHcccccHH
Confidence 47899999999999999999999 999999999999999999999 99999999987 35789999888888899999
Q ss_pred cccCchhHHhHHHHHHHHhhchhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccCC-CCc--------eeee
Q psy5830 78 MELGISPIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGD-PSE--------IGAA 147 (503)
Q Consensus 78 f~LGI~PyItAsIi~QLL~~~kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~~-~~~--------l~~a 147 (503)
|+|||+||||||||||||++.++.+++ |+|+||+|+|++|||+|+++|++||++++.++.++. ++. .+++
T Consensus 80 faLGI~PyItASII~QLL~g~~iipl~kege~gR~k~~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~ivl~L~~ 159 (490)
T 2ww9_A 80 LEFGLFPNISSGLILQLLAGLKVIKVNFKIQSDRELFQSLTKVFAIVQYVILTNIFIFAGYFGDDLSVVQIGLINFQLVG 159 (490)
T ss_dssp TSSTTHHHHHHHHHHHHHHHHTSSCCCTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCSTTHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhhCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 999999999999999999877666665 577999999999999999999999999998765442 211 1356
Q ss_pred cc------cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCc--cccchHHHHHHHH-hhhhhHHHHHHHHH
Q psy5830 148 GV------PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGT--EFEGAVIALFHLL-ATRQDKVRALREAF 218 (503)
Q Consensus 148 G~------~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~--~~~G~~~~~~~~l-~~~~~~~~~i~~~~ 218 (503)
|+ ||+++||||+|||+||||++|||+++||+++++.+.+.++|. |++|+++++++.+ .+++++.+++.+++
T Consensus 160 Gt~~lmwLgE~It~G~GIGnGiSLiI~agI~~~lp~~~~s~~~~~~~~~~~~e~~G~~~~~~~~~~~~~~~~~~~l~~~~ 239 (490)
T 2ww9_A 160 AGIFTTLLAEVIDKGFGFSSGAMIINTVVIATNLVADTFGVSQIKVGEDDQTEAQGALINLIQGLRSKHKTFIGGIISAF 239 (490)
T ss_dssp HHHHHHHHHHHHHTTSSSSCHHHHHHHHHHHHHHHHHHTCCCCCCCCSSCCCSCCCHHHHHHHHHHCCCSSCCCSCCCCC
T ss_pred HHHHHHHHHHHHhcccCcccccHHHHHHHHHHHHHHHHhccccccccccccccccchHHHHHHHHhhcccccccchhhHH
Confidence 65 999999999999999999999999999999998877777666 8999999988765 34433334444678
Q ss_pred hhcCchhHHHHHHHHHHHHHHHhhcCeEEEeeceeccccCCcccceeccccccChhHHHHHHHHHHHHHHhhccCCccch
Q psy5830 219 YRQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLST 298 (503)
Q Consensus 219 ~~~~lp~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~~g~~~~yPiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~ 298 (503)
+|.++|+++.+++++++++++||+|++||||||||+|++|+++.||+|+||+||||+||||+++++|+++++|.
T Consensus 240 ~r~~lp~l~~l~~~l~vi~~vV~~q~~~rrIPIqyak~~g~~s~lPlKln~aGviPiIFassll~~p~~i~~~~------ 313 (490)
T 2ww9_A 240 NRDYLPNLTTTIIVLAIAIIVCYLQSVRVELPIRSTRARGTNNVYPIKLLYTGCLSVLFSYTILFYIHIFAFVL------ 313 (490)
T ss_dssp SSSSCCSHHHHHHHHHHHHHHHHHTTCCEECCCBCSSSSSBCCCCEECHHHHTHHHHHHHHHHHHHCSSSCSTT------
T ss_pred hhccccHHHHHHHHHHHHHHHheeeeeEEEEEEEEcccCCcCceeeeEeccccchHHHHHHHHHHHHHHHHHHH------
Confidence 89999999889999999999999999999999999998766545599999999999999999999998887100
Q ss_pred hhhhhhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCcc
Q psy5830 299 YLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENL 378 (503)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~ 378 (503)
-++++..++++...++++.|.+. +++++|++++++|++||.++
T Consensus 314 ---------------------------------~~~~~~~~~~~~~~~~lg~~~~~----~~~~~~~~~~~~~l~~p~~~ 356 (490)
T 2ww9_A 314 ---------------------------------IQLVAKNEPTHIICKIMGHYENA----NNLLAVPTFPLSLLAPPTSF 356 (490)
T ss_dssp ---------------------------------THHHHHCCCCSSSCTTSBCCSCC----SSSSCSCSSBSCCSSCCCCS
T ss_pred ---------------------------------HHHhcccCCCccccccccchhcc----ccccchhHHHHHHhCCccch
Confidence 01443332233222445667532 13567999999999999998
Q ss_pred cccccc-hhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCchhHHHHHhhhhhhhhhhHHHHHH
Q psy5830 379 GHILED-PIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGA 457 (503)
Q Consensus 379 ~~~~~~-p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~t~~yL~k~i~~~t~~G~~~l~~ 457 (503)
.+.+.+ |+|.++|.++++++|++|+++|.+++|.||||+||||||+|++|||+|||+|+|||+|+++|+|++||+|+++
T Consensus 357 ~~~~~~~p~~~~iY~~~~~~lii~Fs~fy~~i~g~np~dvA~nLkk~G~~IpGiRpG~T~~yL~~vi~rit~~Ga~~L~~ 436 (490)
T 2ww9_A 357 FKGVTQQPLTFITYSAFILVTGIWFADKWQAISGSSARDVALEFKDQGITLMGRREQNVAKELNKVIPIAAVTGASVLSL 436 (490)
T ss_dssp SCCCCSCSHHHHHHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHTSSSCCCCCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCchhhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcccCcccchhHHHHHHHHHHHHHHHhhhhcCccccc
Q psy5830 458 LSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMGGMGTL 501 (503)
Q Consensus 458 ia~lp~llg~~g~GTsiLI~V~vi~~~~~qi~~e~~~~~~~~~~ 501 (503)
+|++|++++.+|||||+||+|||++|++||+++|+.|.+|.+.+
T Consensus 437 lavlp~~l~~~ggGTslLI~VgV~~~~~~qi~~e~~~~g~~~~~ 480 (490)
T 2ww9_A 437 ITVIGESLGLKGKAAGIVVGIAGGFSLLEVITIEYQQSGGQSAL 480 (490)
T ss_dssp HHHHHHHHSCCSSHHHHHHHHHHHHHHHHHHHHHHHTTCSSCST
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhccchhhH
Confidence 99999999877899999999999999999999999999886654
No 3
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=100.00 E-value=8.5e-98 Score=796.29 Aligned_cols=426 Identities=34% Similarity=0.669 Sum_probs=308.5
Q ss_pred chHhhHhHHhhhCCCccCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcChhHHHHHHhhcCcccccccCch
Q psy5830 4 KFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGIS 83 (503)
Q Consensus 4 ~~~~~~~~~~~~lp~v~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~i~ag~~~Slf~LGI~ 83 (503)
+++|.+||+++++|||++|+ |++|+|||++||++++++||+|++||+||+|.+ ..|++.+++.++||+++|+|+|||+
T Consensus 2 ~~~~~~~p~~~~lP~v~~P~-~~~~lr~Kil~Tl~~L~iyrlgs~IPlpGi~~~-~~~~~~~l~~~~Gg~~~SifaLGI~ 79 (482)
T 3mp7_A 2 GARDIIYALERWFPEVERPK-RRVPLRERFMWTGVALILYYVLAEIPVYGIPER-IQDYFQFLRVVLAGRNGSILTLGIG 79 (482)
T ss_dssp -------------------------CTTTHHHHHHHHHHHHHHHHSBCTTCCSS-CCCSCSSTTTTTCSCTTBTTSSTTH
T ss_pred CHHHHHHHHHhhCCCccCcc-ccccHHHHHHHHHHHHHHHHHHhhCCCCCcCcc-cccHHHHHHHhcCCCcccHHHHhhH
Confidence 58999999999999999999 999999999999999999999999999999985 4588888888888899999999999
Q ss_pred hHHhHHHHHHHHhhchhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccCCC----Cc--------eeeecc-
Q psy5830 84 PIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDP----SE--------IGAAGV- 149 (503)
Q Consensus 84 PyItAsIi~QLL~~~kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~~~----~~--------l~~aG~- 149 (503)
||||||||||||++.++.|++ |+|+||+|+|++|||+|+++|++||++++.++.+++. +. .+++|+
T Consensus 80 PyITASII~QLL~~~~l~~l~kege~gR~k~~~~tR~lti~la~iQa~~~v~~~~~~~~~~~~~~~~~~~ivl~L~aGt~ 159 (482)
T 3mp7_A 80 PIVTAGIILQLLVGSEIIKLDLANPEDRRFYQALQRVFSVFMCFFEAAVWILGGAFGRVGVDVTYAIAVLMILQLAMGGI 159 (482)
T ss_dssp HHHHHHHHTTC-----------------------CHHHHHHHHHHHHHHHHHSSSSSCC------CTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHH
Confidence 999999999999998777776 5779999999999999999999999999988765431 11 134665
Q ss_pred -----cccccccccccCchhHHHHHHHHHHhHHhhcccceeccC-----CCccccchHHHHHHHHhhhhhHHHHHHHHHh
Q psy5830 150 -----PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTG-----RGTEFEGAVIALFHLLATRQDKVRALREAFY 219 (503)
Q Consensus 150 -----~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~-----~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~ 219 (503)
||+++| ||+|||+||||++|||+++||+++++.+.+.+ +|.|++|+++++++.+.+ +++.++++
T Consensus 160 ~lmwL~E~It~-~GiGnGiSLiI~agI~~~lp~~~~~~~~~~~~~~~~~~~~e~~g~~~~~~~~~~~-----~~l~~~~~ 233 (482)
T 3mp7_A 160 VLIILDELVSK-WGIGSGISLFIAAGVSQTILTRSLNPLTDPNIIDPLTGQPAIVGAIPYFIQHILK-----GDLWGAIY 233 (482)
T ss_dssp HHHHHHHHHHH-HSSSCHHHHHHHHHHHHHHHHHHSCCCCCCC---CCSSSCCCSCHHHHHHHHHHH-----CCSCSSCC
T ss_pred HHHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHhhhhcccccccccccccccchHHHHHHHHhc-----chhhHHHh
Confidence 999999 99999999999999999999999987544322 467899999888776532 33445567
Q ss_pred hcCch--hHHHHHHHHHHHHHHHhhcCeEEEeeceeccccCCcccc-eeccccccChhHHHHHHHHHHHHHHhhccCCcc
Q psy5830 220 RQNLP--NLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSMGTSL 296 (503)
Q Consensus 220 ~~~lp--~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~~g~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~~~~~ 296 (503)
| ++| +++.+++++++++++||+|++|||||+||+|++ +++| |+|+||+||||+||||+++++|++++
T Consensus 234 ~-~lp~~~l~~l~~~l~v~~~vV~~q~~~rrIPvqyak~~--~~~~iPiKln~aGviPiIfassll~~p~~i~------- 303 (482)
T 3mp7_A 234 R-GGSAPDMLSVVATIVVFFIVVYFESMRVEIPLGYRGVT--VRGSYPIRFLYVSNIPIILTFALYANIQLWA------- 303 (482)
T ss_dssp C-SSSSCCHHHHHHHHHHHHHHHHHHHCCEEC--------------CEECSSSSTTHHHHHHHHHHHHHHHHH-------
T ss_pred h-ccchhHHHHHHHHHHHHHHhheeEeeEEEEEEEecccc--ccceeeEeecccCchHHHHHHHHHHHHHHHH-------
Confidence 7 788 788888999999999999999999999999976 5567 99999999999999999999999988
Q ss_pred chhhhhhhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCC
Q psy5830 297 STYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPE 376 (503)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~ 376 (503)
++++.. ..+++++|++. ..+|++|++||++||.
T Consensus 304 ------------------------------------~~~~~~-----~~~~l~~~~~~------~~~~~~g~~~~l~p~~ 336 (482)
T 3mp7_A 304 ------------------------------------RVLDRL-----GHPWLGRFDPT------TGSPISGFVLYVIPPR 336 (482)
T ss_dssp ------------------------------------HHHHTT-----SCCSSBCCCCT------TSCCCCBSGGGSCCCS
T ss_pred ------------------------------------HHhhhc-----cchhhhhhccc------ccccchhHHHHhCCcc
Confidence 444211 12456767532 2458999999999998
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch--hHHHHHhhhhhhhhhhHHH
Q psy5830 377 NLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS--MIHELNRYIPTAAAFGGLC 454 (503)
Q Consensus 377 ~~~~~~~~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~--t~~yL~k~i~~~t~~G~~~ 454 (503)
++.+.+.+|+|.++|.++++++|++||++|.++|+.||||+||||||+|++|||+|||+ |+|||+|+++|+|++||+|
T Consensus 337 s~~~~~~~p~~~~~Y~~~~~~lii~Fs~fy~~is~~np~diA~nlkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~ 416 (482)
T 3mp7_A 337 NIFSVIDNPVRAIVYLILTVIFSLLFGYLWVELTGLDARSIARQLQRAGLQIPGFRRDPRTLEKVLQRYIPYVTFWGSLT 416 (482)
T ss_dssp SSTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHSSTTGGGCCC--------CCTTTTTTSTTCC------CTHHHHHHHH
T ss_pred cHHHHhcCcchhHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHcCCccCCcCCCchhHHHHHHHHHHHHHHHhHHH
Confidence 88777788999999999999999999999999999999999999999999999999995 6999999999999999999
Q ss_pred HHHHHHHHHHHcccCcccchhHHHHHHHHHHHHHHHhhhh
Q psy5830 455 IGALSVLADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSE 494 (503)
Q Consensus 455 l~~ia~lp~llg~~g~GTsiLI~V~vi~~~~~qi~~e~~~ 494 (503)
++++|++|++++..|||||+||+||+++|++||+++|+..
T Consensus 417 L~~iavlp~~l~~~ggGTslLI~VgV~~~~~~qi~s~~~~ 456 (482)
T 3mp7_A 417 VALIAVLADFLGALGTGTGILLTVGILYRFYEEIAREQIT 456 (482)
T ss_dssp HHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCceeeeeeHHHHHHHHHHHHHHHHH
Confidence 9999999999998899999999999999999999999754
No 4
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=100.00 E-value=1.5e-92 Score=748.28 Aligned_cols=406 Identities=36% Similarity=0.701 Sum_probs=338.3
Q ss_pred HhhHhHHhhhCCCccCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcChhHHHHHHhhcCcccccccCchhH
Q psy5830 6 LEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPI 85 (503)
Q Consensus 6 ~~~~~~~~~~lp~v~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~~~~~~~~i~ag~~~Slf~LGI~Py 85 (503)
+|.+||+.+++|||++|+ |++|+|||++||++++++||+|+|||+||+|.+. .|++.+++.++|++++|+|+|||+||
T Consensus 1 ~~~~~p~~~~lP~v~~p~-~~~~lr~kil~Tl~~L~iyr~gs~IPlpGi~~~~-~~~~~~~~~~~a~~~~sifaLGI~Py 78 (436)
T 1rh5_A 1 MKKLIPILEKIPEVELPV-KEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQI-PAIFEFWQTITASRIGTLITLGIGPI 78 (436)
T ss_dssp -CTTHHHHHHSCCCCCCS-SCCCHHHHHHHHHHHHHHHHHHTTSBCCCSSCCC-CSCCTTHHHHHTCCTTBTTTTTTHHH
T ss_pred CchhhHHHHhCCCCCCCC-cCccHHHHHHHHHHHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHhhccccchHHHHccHHH
Confidence 589999999999999999 9999999999999999999999999999999854 47888887777779999999999999
Q ss_pred HhHHHHHHHHhhchhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccCCCCc--------eeeecc------c
Q psy5830 86 VTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSE--------IGAAGV------P 150 (503)
Q Consensus 86 ItAsIi~QLL~~~kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~~~~~--------l~~aG~------~ 150 (503)
|||||+||||++.++.+.+ |+|+||+|+|++|||+|+++|++||++++.++.+.+++. .+++|+ |
T Consensus 79 ItAsII~QLL~g~~~i~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~g~~~~~~~~~~~~~vl~L~~Gt~~lmwL~ 158 (436)
T 1rh5_A 79 VTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMCFVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLD 158 (436)
T ss_dssp HHHHHHHHHHHHHTTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCceeeecccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877666666 578999999999999999999999999998765554431 135665 9
Q ss_pred ccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCchhHHHHH
Q psy5830 151 DDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLL 230 (503)
Q Consensus 151 e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~lp~l~~~i 230 (503)
|+++| ||+|||+|++|++|||+++||+++++ .|+++++++.+.++.+ +..++..++
T Consensus 159 E~It~-~GiGnGiSLiI~~gI~~~lp~~~~~~-----------~G~i~~~~~~~~~~~~------------~~~~l~~l~ 214 (436)
T 1rh5_A 159 EIVSK-YGIGSGIGLFIAAGVSQTIFVGALGP-----------EGYLWKFLNSLIQGVP------------NIEYIAPII 214 (436)
T ss_dssp HHHHH-HSSSCHHHHHHHHHHHHHHHHHHHST-----------TCHHHHHHHHTTTTCC------------CGGGTHHHH
T ss_pred HHHHh-cCcccccHHHHHHHHHHHHHHHHhcc-----------cchHHHHHHHHhcccc------------hHHHHHHHH
Confidence 99999 99999999999999999999998764 2788888775533211 112355667
Q ss_pred HHHHHHHHHHhhcCeEEEeeceeccccCCcccc-eeccccccChhHHHHHHHHHHHHHHhhccCCccchhhhhhhHHHHH
Q psy5830 231 ATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTYLENGLMLVVV 309 (503)
Q Consensus 231 ~~v~v~~~vv~~~~~~~~IPi~~~r~~g~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~~~~~~~~~~~ 309 (503)
+++++++++||+|++|||||+||+|.+| +++| |+|+||+|+||+||||+++++|++++
T Consensus 215 ~~l~v~~~vV~~~~~~rrIPvqyak~~g-~~~~lPlKln~aGviPiIfassll~~p~~i~-------------------- 273 (436)
T 1rh5_A 215 GTIIVFLMVVYAECMRVEIPLAHGRIKG-AVGKYPIKFVYVSNIPVILAAALFANIQLWG-------------------- 273 (436)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCCSSSTT-CCCEEEEESCTTCSHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHhhcceEEEEEEEecccCC-ccceeeeecccccchHHHHHHHHHHHHHHHH--------------------
Confidence 7788899999999999999999999544 4566 99999999999999999999999988
Q ss_pred HHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCcccccccchhHHH
Q psy5830 310 AQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAI 389 (503)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~~~~~~p~~~i 389 (503)
++++.. +. +++++|+ .++|++|++||++||.+..+.+.+|.|..
T Consensus 274 -----------------------~~~~~~--~~---~~~g~~~--------~~~~~~gl~yyl~pp~~~~~~~~~p~~~~ 317 (436)
T 1rh5_A 274 -----------------------LALYRM--GI---PILGHYE--------GGRAVDGIAYYLSTPYGLSSVISDPIHAI 317 (436)
T ss_dssp -----------------------HHHHTT--SC---CTTCCBC--------SSSBSSSTTGGGCCCCSSSCCCSCHHHHH
T ss_pred -----------------------HHhccc--Cc---chhhhcc--------cccccccchhhcCChhHHHHHHhCCccch
Confidence 433211 11 2456662 24799999999999987766667888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch--hHHHHHhhhhhhhhhhHHHHHHHHHHHHHHcc
Q psy5830 390 LYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS--MIHELNRYIPTAAAFGGLCIGALSVLADFMGA 467 (503)
Q Consensus 390 vY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~--t~~yL~k~i~~~t~~G~~~l~~ia~lp~llg~ 467 (503)
+|.++.+++|++|+++|.++++.||||+||||||+|++|||+|||+ |+|||+|+++|+|++||+|++++|++|++++.
T Consensus 318 ~y~~~~~~lii~Fs~fy~~is~~np~diA~~Lkk~G~~IpGiRpG~~tt~~yL~~vi~rit~~Ga~~l~~ia~lp~~l~~ 397 (436)
T 1rh5_A 318 VYMIAMIITCVMFGIFWVETTGLDPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGA 397 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHCCCcCCCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999995 79999999999999999999999999999987
Q ss_pred cCcccchhHHHHHHHHHHHHHHHhhhh
Q psy5830 468 IGSGTGILLAVTIIYQYFEIFVKEQSE 494 (503)
Q Consensus 468 ~g~GTsiLI~V~vi~~~~~qi~~e~~~ 494 (503)
+|||||+||+||+++|++||+++|...
T Consensus 398 ~~gGTslLI~VgV~~~~~~qi~~~~~~ 424 (436)
T 1rh5_A 398 LGGGTGVLLTVSIVYRMYEQLLRERTS 424 (436)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred hcCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999998653
No 5
>3dl8_G Preprotein translocase subunit SECY; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=100.00 E-value=5.8e-82 Score=666.61 Aligned_cols=362 Identities=21% Similarity=0.308 Sum_probs=295.6
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCc--------ChhHHHHHHhhc--CcccccccCchhHHhHH
Q psy5830 20 AKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA--------DPFYWIRVILAS--NRGTLMELGISPIVTSG 89 (503)
Q Consensus 20 ~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~--------~~~~~~~~i~ag--~~~Slf~LGI~PyItAs 89 (503)
.... |++|+|||++||++++++||+|+|||+||+|.++.+ |++.+++.++|| +++|+|+|||+||||||
T Consensus 6 ~~~~-~~~~lr~kilfTl~~L~iyrlg~~IPlpGi~~~~~~~~~~~~~~~~~~~l~~~~GGa~~~~sifaLGI~PyItAs 84 (429)
T 3dl8_G 6 KALF-ELKELRQKFIFTLLMFVIYRLGSHIPIPGINPEALRDFLKAFEGSVFALYDIFSGGNLGRLTVFALGVMPYISAS 84 (429)
T ss_dssp --CC-SCCCCHHHHHHHHHHHHHHHHHHHCSSCCCC---------------CCSSSSSSCCSSSCCCSSSSSHHHHHHHH
T ss_pred HHHH-cchhHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHhhhccccHHHHHHHHhCcccccccHHHHhhHHHHHHH
Confidence 3445 778999999999999999999999999999987542 455555444554 69999999999999999
Q ss_pred HHHHHHhhc--hhcccC--CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhccc-------C---CCCc--------eeee
Q psy5830 90 LIMQLLAGA--KLIEVG--DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMY-------G---DPSE--------IGAA 147 (503)
Q Consensus 90 Ii~QLL~~~--kl~~~~--~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~-------~---~~~~--------l~~a 147 (503)
|+||||+.. ++.|.+ |+|+||+|+|++|||+|+++|++||++++.++.+ + +++. .+++
T Consensus 85 II~QLL~~~~P~l~~l~k~ege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~a 164 (429)
T 3dl8_G 85 IMMQLLTVAIPSLQRLAKEEGDYGRYKINEYTKYLTLFVATVQSLGIAFWIRGQVSPKGIPVVENPGISFILITVLTLVA 164 (429)
T ss_dssp HHHHHHHHHSSCSSSCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCCCCSSSTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCcHHHHHHHHHHHHH
Confidence 999999987 555543 3679999999999999999999999999876543 1 1111 1356
Q ss_pred cc------cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhc
Q psy5830 148 GV------PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQ 221 (503)
Q Consensus 148 G~------~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~ 221 (503)
|+ ||+++| ||+|||+|++|++|||+++|+++++..+...+ | + .+.
T Consensus 165 Gt~~lmwL~E~It~-~GiGnGiSliI~~gI~~~lp~~~~~~~~~~~~-g-~-~~~------------------------- 215 (429)
T 3dl8_G 165 GTMFLVWIADRITE-KGIGNGASLIIFAGIVANFPNAVIQFYEKVKT-G-D-IGP------------------------- 215 (429)
T ss_dssp HHHHHHHHHHHHHH-HTCTTHHHHHHHHHHHHHTTTTSSCCCCSSSC-S-S-SCT-------------------------
T ss_pred HHHHHHHHHHHHhh-cCcCcchHHHHHHHHHHHHHHHHHhHHHHhcC-C-c-chH-------------------------
Confidence 65 999999 99999999999999999999998876532211 1 1 121
Q ss_pred CchhHHHHHHHHHHHHHHHhhcCeEEEeeceeccc-c-----CCcccc-eeccccccChhHHHHHHHHHHHHHHhhccCC
Q psy5830 222 NLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARY-R-----GQYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSMGT 294 (503)
Q Consensus 222 ~lp~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~-~-----g~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~~~ 294 (503)
++++..+++++++++++||+|++|||||+||+|+ . +++++| |+|+||+|+||+||||+++++|++++
T Consensus 216 -~~~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~----- 289 (429)
T 3dl8_G 216 -LTLLLIIALIIAIIVGIVYVQEAERRIPIQYPGRQVGRQLYAGRKTYLPIKINPAGVIPIIFAQALLLIPSTLL----- 289 (429)
T ss_dssp -HHHHHHHHHHHHHHHHHTCSCCCCCCCCCBCSSSCBCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHH-----
T ss_pred -HHHHHHHHHHHHHHHHHHHheeeEEEEEEEEchhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHH-----
Confidence 1345677788888999999999999999999975 2 345677 99999999999999999999999987
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCC
Q psy5830 295 SLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSP 374 (503)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lsp 374 (503)
+++ ++ .|. +++++|++|
T Consensus 290 --------------------------------------~~~-----~~-------~~~-------------~~~~~~l~~ 306 (429)
T 3dl8_G 290 --------------------------------------NFV-----QN-------PFI-------------KVIADMFQP 306 (429)
T ss_dssp --------------------------------------HSC-----SS-------CCC-------------CTTTTTTTT
T ss_pred --------------------------------------HHc-----ch-------HHH-------------HHHHHHcCC
Confidence 221 11 132 134567775
Q ss_pred CCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCc-hhHHHHHhhhhhhhhhhHH
Q psy5830 375 PENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQ-SMIHELNRYIPTAAAFGGL 453 (503)
Q Consensus 375 p~~~~~~~~~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg-~t~~yL~k~i~~~t~~G~~ 453 (503)
+ +|+|.++|++++++||+||+.+.+ ||||+||||||+|++|||+||| +|+|||+|+++|+|++||+
T Consensus 307 ~--------~~~y~~~y~~lii~Fs~fy~~i~~-----np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~ 373 (429)
T 3dl8_G 307 G--------AIFYNFLYVTFIVFFTYFYTAVLI-----NPVELAENLHKAGAFIPGVRPGQDTVKYLERIINRLIFFGAL 373 (429)
T ss_dssp T--------HHHHHHHHHHHHHHHHHHHHTCTT-----HHHHHHHTCCCCBSSSBCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--------chHHHHHHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHhHH
Confidence 3 699999999999999999998887 9999999999999999999999 5999999999999999999
Q ss_pred HHHHHHHHHHHHcc-cC-----cccchhHHHHHHHHHHHHHHHhhh
Q psy5830 454 CIGALSVLADFMGA-IG-----SGTGILLAVTIIYQYFEIFVKEQS 493 (503)
Q Consensus 454 ~l~~ia~lp~llg~-~g-----~GTsiLI~V~vi~~~~~qi~~e~~ 493 (503)
|++++|++|++++. .| ||||+||+||+++|++||++++..
T Consensus 374 ~L~~iavlp~~~~~~~g~~~~~gGTslLI~Vgv~l~~~~qi~s~l~ 419 (429)
T 3dl8_G 374 FLSVIALIPILISVWFNIPFYFGGTTALIVVGVALDTFRQIETYLI 419 (429)
T ss_dssp HHHHHHHHHHHHTTSSCCSCCCSTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhCCCccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999975 44 899999999999999999999864
No 6
>2zjs_Y Preprotein translocase SECY subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_Y
Probab=100.00 E-value=3.7e-81 Score=660.69 Aligned_cols=356 Identities=24% Similarity=0.383 Sum_probs=290.2
Q ss_pred CChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCcC-------hhHHHHHHhhc---CcccccccCchhHHhHHHHHHH
Q psy5830 25 RKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSAD-------PFYWIRVILAS---NRGTLMELGISPIVTSGLIMQL 94 (503)
Q Consensus 25 ~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~~-------~~~~~~~i~ag---~~~Slf~LGI~PyItAsIi~QL 94 (503)
|++|+|+|++||++++++||+|+|||+||+|.++.+| ++..+.++|+| +++|+|+|||+|||||||+|||
T Consensus 10 ~~~~lr~kilfTl~~L~iyrlg~~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGa~~~~SifaLGI~PyItASII~QL 89 (434)
T 2zjs_Y 10 QIPELRQRVLFTLLVLAAYRLGAFIPTPGVDLDKIQEFLRTAQGGVFGIINLFSGGNFERFSIFALGIMPYITAAIIMQI 89 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTTCBCTTBCHHHHHHHHHSSGGGTTHHHHHHTTSCGGGTBTTSSTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHhcccccCCcCHHHHHHHHhcccccHHHHHHHHcccccccCcHHHHhhHHHHHHHHHHHH
Confidence 6789999999999999999999999999999875433 45544556654 4999999999999999999999
Q ss_pred Hhhc-----hhcccCCChhhhhhhhhhHHHHHHHHHHHHHHHHHHhc---ccC-----C--CCc--------eeeecc--
Q psy5830 95 LAGA-----KLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTG---MYG-----D--PSE--------IGAAGV-- 149 (503)
Q Consensus 95 L~~~-----kl~~~~~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~---~~~-----~--~~~--------l~~aG~-- 149 (503)
|+.. |++|+ +|+||+|+|++|||+|+++|++||++++.+. .++ + ++. .+++|+
T Consensus 90 L~~vip~l~~l~ke--Ge~Gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~vl~L~aGt~~ 167 (434)
T 2zjs_Y 90 LVTVVPALEKLSKE--GEEGRRIINQYTRIGGIALGAFQGFFLATAFLGAEGGRFLLPGWSPGPFFWFVVVVTQVAGIAL 167 (434)
T ss_dssp HHHHSHHHHHHHTS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSSSTTBCTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCccccccCCccHHHHHHHHHHHHHHHHH
Confidence 9764 45444 5699999999999999999999999998863 222 2 221 135665
Q ss_pred ----cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCchh
Q psy5830 150 ----PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPN 225 (503)
Q Consensus 150 ----~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~lp~ 225 (503)
||+++| ||+|||+|++|++|||+++|+.+.+...... . |.. +...
T Consensus 168 lmwLgE~It~-~GIGnGiSliI~~gIv~~lp~~~~~~~~~~~-~-----~~~------------------------~~~~ 216 (434)
T 2zjs_Y 168 LLWMAERITE-YGIGNGTSLIIFAGIVVEWLPQILRTIGLIR-T-----GEV------------------------NLVA 216 (434)
T ss_dssp HHHHHHHHHH-TSSSCHHHHHHHHHHHHTHHHHHHHHHHTTT-T-----TSS------------------------CHHH
T ss_pred HHHHHHHHhh-cCcccccHHHHHHHHHHHHHHHHHHHHHHhc-c-----Ccc------------------------cHHH
Confidence 999999 9999999999999999999987654321100 0 000 0111
Q ss_pred -HHHHHHHHHHHHHHHhhcCeEEEeeceeccc-c-----CCcccc-eeccccccChhHHHHHHHHHHHHHHhhccCCccc
Q psy5830 226 -LMNLLATVLVFAIVIYFQGFRVDLPIKSARY-R-----GQYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLS 297 (503)
Q Consensus 226 -l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~-~-----g~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~~~~~~ 297 (503)
+..+++++++++++||+|++|||||+||+|+ + +++++| |+|+||+||||+||||+++++|+++++
T Consensus 217 ~~~~l~~~~~vi~~vV~~~~~~rrIPvqyakr~~gr~~~~g~~s~lPlKln~aGviPiIfassll~~p~~i~~------- 289 (434)
T 2zjs_Y 217 FLFFLAFIVLAFAGMAAVQQAERRIPVQYARKVVGGRVYGGQATYIPIKLNAAGVIPIIFAAAILQIPIFLAA------- 289 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEEEEEEECC-------CCCCEEEEEEESSSCTHHHHHHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHHHHHHheeeEEEEeehhhhhhccCcccCCcceEEeeehhcccchHHHHHHHHHHHHHHHHH-------
Confidence 3455677888899999999999999999985 2 256678 999999999999999999999999882
Q ss_pred hhhhhhhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCc
Q psy5830 298 TYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPEN 377 (503)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~ 377 (503)
++. ++ .|.+ ++++|++|+
T Consensus 290 ------------------------------------~~~----~~-------~~~~-------------~~~~~l~~~-- 307 (434)
T 2zjs_Y 290 ------------------------------------PFQ----DN-------PVLQ-------------GIANFFNPT-- 307 (434)
T ss_dssp ------------------------------------TCT----TC-------HHHH-------------HHHHHHCSS--
T ss_pred ------------------------------------Hhc----cc-------hHHH-------------HHHHHcCCC--
Confidence 110 01 0211 234566653
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCc-hhHHHHHhhhhhhhhhhHHHHH
Q psy5830 378 LGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQ-SMIHELNRYIPTAAAFGGLCIG 456 (503)
Q Consensus 378 ~~~~~~~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg-~t~~yL~k~i~~~t~~G~~~l~ 456 (503)
+|+|.++|++++++||+||+.+.+ ||||+||||||+|++|||+||| +|++||+|+++|+|++||+|++
T Consensus 308 ------~~~y~~~y~~lii~Fs~fyt~i~~-----np~diA~nLkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~l~ 376 (434)
T 2zjs_Y 308 ------RPSGLFIEVLLVILFTYVYTAVQF-----DPKRIAESLREYGGFIPGIRPGEPTVKFLEHIVSRLTLWGALFLG 376 (434)
T ss_dssp ------SHHHHHHHHHHHHHHHHHHHHCSS-----CHHHHHHHTTTTTEECTTBCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------ChHHHHHHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHCCCccCCCCCChhHHHHHHHHHHHHHHHhHHHHH
Confidence 699999999999999999999888 9999999999999999999999 5999999999999999999999
Q ss_pred HHHHHHHHHccc-C------cccchhHHHHHHHHHHHHHHHhhh
Q psy5830 457 ALSVLADFMGAI-G------SGTGILLAVTIIYQYFEIFVKEQS 493 (503)
Q Consensus 457 ~ia~lp~llg~~-g------~GTsiLI~V~vi~~~~~qi~~e~~ 493 (503)
++|++|++++.. | ||||+||+|||++|++||+++|..
T Consensus 377 ~ia~lp~~l~~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~~~ 420 (434)
T 2zjs_Y 377 LVTLLPQIIQNLTGIHSIAFSGIGLLIVVGVALDTLRQVESQLM 420 (434)
T ss_dssp HHHHHHHHHHHHSSCCCGGGSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998655 3 899999999999999999999874
No 7
>3j01_A Preprotein translocase SECY subunit; ribonucleoprotein, nucleotide-binding, PR biosynthesis, translation, zinc-finger, 70S ribosome, ribos translocon; 7.10A {Escherichia coli 536} PDB: 2akh_Y 2aki_Y
Probab=100.00 E-value=2.2e-81 Score=662.96 Aligned_cols=364 Identities=20% Similarity=0.323 Sum_probs=297.4
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCCc--------ChhHHHHHHhhc--CcccccccCchhHHhHHHH
Q psy5830 22 PEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA--------DPFYWIRVILAS--NRGTLMELGISPIVTSGLI 91 (503)
Q Consensus 22 p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~~--------~~~~~~~~i~ag--~~~Slf~LGI~PyItAsIi 91 (503)
.+|..+|+|||++||++++++||+|+|||+||+|.++.+ +++.++..+.+| +++|+|+|||+|||||||+
T Consensus 5 ~~~~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~fsGGal~~~SifaLGI~PyItAsII 84 (435)
T 3j01_A 5 AKGGLGELKRRLLFVIGALIVFRIGSFIPIPGIDAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASII 84 (435)
T ss_dssp CCSSSCSSSHHHHHHHTHHHHHHHHHSCSTTCCSSSSCCSSCSCSCSCCSSSHHHHTCCSSSCCCCSSCCSHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhccccHHHHHHHHcccccccccHHHHchHHHHHHHHH
Confidence 345779999999999999999999999999999987543 245555444555 6999999999999999999
Q ss_pred HHHHhhc--hhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhccc-----C---CCCc--------eeeecc---
Q psy5830 92 MQLLAGA--KLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMY-----G---DPSE--------IGAAGV--- 149 (503)
Q Consensus 92 ~QLL~~~--kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~-----~---~~~~--------l~~aG~--- 149 (503)
||||+.. ++.|++ |+|+||+|+|++|||+|+++|++||++++.++.. + +++. .+++|+
T Consensus 85 ~QLL~~~ip~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L~aGt~~l 164 (435)
T 3j01_A 85 IQLLTVVHPTLAEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVINPGFAFYFTAVVSLVTGTMFL 164 (435)
T ss_dssp HHHHHHHCSSSSSCSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSCCCSCCCCSCSCSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccCCcHHHHHHHHHHHHHHHHHH
Confidence 9999986 666665 4779999999999999999999999999876531 1 1111 135665
Q ss_pred ---cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHhhcCchhH
Q psy5830 150 ---PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNL 226 (503)
Q Consensus 150 ---~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~~~~lp~l 226 (503)
||+++| ||+|||+||+|++|||+++|+++.+..... +.++ .+. ...+
T Consensus 165 mwL~E~It~-~GiGnGiSLiI~~gI~~~lp~~~~~~~~~~--~~~~-~~~--------------------------~~~l 214 (435)
T 3j01_A 165 MWLGEQITE-RGIGNGISIIIFAGIVAGLPPAIAHTIEQA--RQGD-LHF--------------------------LVLL 214 (435)
T ss_dssp HHHHHHSTT-SCCSSSHHHHHHHHHHHHSSTTSSSCCCSS--SSTT-SSS--------------------------HHHH
T ss_pred HHHHHHHHh-cCcccccHHHHHHHHHHHHHHHHHHHHHHH--hccc-chH--------------------------HHHH
Confidence 999999 999999999999999999998876643211 1000 000 0113
Q ss_pred HHHHHHHHHHHHHHhhcCeEEEeeceeccc-c-----CCcccc-eeccccccChhHHHHHHHHHHHHHHhhccCCccchh
Q psy5830 227 MNLLATVLVFAIVIYFQGFRVDLPIKSARY-R-----GQYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSMGTSLSTY 299 (503)
Q Consensus 227 ~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~-~-----g~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~~~~~~~~ 299 (503)
..+++++++++++||+|++|||||+||+|+ . +++++| |+|+||+|+||+||||+++++|++++
T Consensus 215 ~~~~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~s~iPlKln~aGvmPiIfassll~~p~~i~---------- 284 (435)
T 3j01_A 215 LVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIPAIFASSIILFPATIA---------- 284 (435)
T ss_dssp HHHHHHHHHHHHTTCCCCCSCCCCCCCCCCCSSCCCCCCCCCCCSCCCCCSSCSCSSHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHhheeEEEEEEEehhhhccccccCCCCceeeeeeccccchHHHHHHHHHHHHHHHH----------
Confidence 456677788899999999999999999975 2 245677 99999999999999999999999987
Q ss_pred hhhhhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCcccccccccccCCCCccc
Q psy5830 300 LENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLG 379 (503)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~lspp~~~~ 379 (503)
++ ++++. -+.|. +++++|++|
T Consensus 285 ---------------------------------~~----~~~~~----~~~~~-------------~~~~~~l~~----- 305 (435)
T 3j01_A 285 ---------------------------------SW----FGGGT----GWNWL-------------TTISLYLQP----- 305 (435)
T ss_dssp ---------------------------------HH----SSSCC----CSSCC-------------SSSSCCCCS-----
T ss_pred ---------------------------------HH----ccCCc----chhHH-------------HHHHHHcCC-----
Confidence 21 11110 01232 245567775
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCch-hHHHHHhhhhhhhhhhHHHHHHH
Q psy5830 380 HILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQS-MIHELNRYIPTAAAFGGLCIGAL 458 (503)
Q Consensus 380 ~~~~~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg~-t~~yL~k~i~~~t~~G~~~l~~i 458 (503)
.+|+|.++|++++++||+||+.+.+ ||||+||||||+|++|||+|||+ |+|||+|+++|+|++||+|++++
T Consensus 306 ---~~~~~~~~y~~lii~F~~fyt~i~~-----np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~Ga~~L~~i 377 (435)
T 3j01_A 306 ---GQPLYVLLYASAIIFFCFFYTALVF-----NPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFI 377 (435)
T ss_dssp ---SGGGGTHHHHHHHHHHHHHHHHHSS-----CTTHHHHHTTSTTCSSSCCSSSSSSCSHHHHHHHHHCHHHHHHHHHH
T ss_pred ---CCcHHHHHHHHHHHHHHHHHHHHcc-----CHHHHHHHHHHcCCcCCCcCCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3699999999999999999998877 99999999999999999999995 99999999999999999999999
Q ss_pred HHHHHHHccc------CcccchhHHHHHHHHHHHHHHHhh
Q psy5830 459 SVLADFMGAI------GSGTGILLAVTIIYQYFEIFVKEQ 492 (503)
Q Consensus 459 a~lp~llg~~------g~GTsiLI~V~vi~~~~~qi~~e~ 492 (503)
|++|++++.. +||||+||+|||++|++||++...
T Consensus 378 avlP~~l~~~~~~~~~~gGTslLI~VgV~ldt~~qi~s~l 417 (435)
T 3j01_A 378 CLIPEFMRDAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLM 417 (435)
T ss_dssp HHHHHHTTSCCSSSSSSCCHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccCeecccHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999863 489999999999999999999865
No 8
>3din_C Preprotein translocase subunit SECY; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=100.00 E-value=2.5e-81 Score=661.82 Aligned_cols=355 Identities=20% Similarity=0.276 Sum_probs=294.3
Q ss_pred cCCCCCChhhHHHHHHHHHHHHHHHHcCcccCCCccCCCC-------------cChhHHHHHHhhc--CcccccccCchh
Q psy5830 20 AKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDS-------------ADPFYWIRVILAS--NRGTLMELGISP 84 (503)
Q Consensus 20 ~~p~~~~~~l~~ril~T~~~l~iy~lg~~IPlpGi~~~~~-------------~~~~~~~~~i~ag--~~~Slf~LGI~P 84 (503)
.... |++|+|+|++||++++++||+|+|||+||+|.++. .|++.+++.++|| +++|+|+|||+|
T Consensus 6 ~~~~-~~~~lr~kilfTl~~L~iyrlgs~IPlPGi~~~~~~~~~~~~~~~~~~~~~~~~l~~~~Ggal~~~SifaLGI~P 84 (431)
T 3din_C 6 KNAF-KIPELRDRIIFTFLALIVFRMGIYIPVPGLNLEAWGEIFRRIAETAGVAGILSFYDVFTGGALSRFSVFTMSVTP 84 (431)
T ss_dssp --CC-SCSCCSSHHHHHHHHHHHHHHHHSCSSCCCCC--------------------CTTHHHHCSSSSCCCSSSSSHHH
T ss_pred HHHH-cChhHHHHHHHHHHHHHHHHHHccCCCCCcCHHHHHHHHhhhccccccccHHHHHHHHcCcccccccHHHHhhHH
Confidence 3455 77899999999999999999999999999998753 3567777667777 799999999999
Q ss_pred HHhHHHHHHHHhhc--hhcccC-CChhhhhhhhhhHHHHHHHHHHHHHHHHHHhcccC-------CCC-c--------ee
Q psy5830 85 IVTSGLIMQLLAGA--KLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYG-------DPS-E--------IG 145 (503)
Q Consensus 85 yItAsIi~QLL~~~--kl~~~~-~~~~gr~k~~~~tr~lti~la~iQa~~~v~~~~~~-------~~~-~--------l~ 145 (503)
||||||+||||+.. ++.|.+ |+|+||+|+|++|||+|+++|++||++++.++.++ +++ . .+
T Consensus 85 yItAsII~QLL~~~iP~l~~l~kege~gr~ki~~~tR~lti~la~iQa~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~L 164 (431)
T 3din_C 85 YITASIILQLLASVMPSLKEMLREGEEGRKKFAKYTRRLTLLIGGFQAFFVSFSLARSNPDMVAPGVNVLQFTVLSTMSM 164 (431)
T ss_dssp HHHHHHHHHHHHHHSCSSSSCSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCCCCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccccCCchHHHHHHHHHHH
Confidence 99999999999987 666665 46799999999999999999999999998765431 122 1 13
Q ss_pred eecc------cccccccccccCchhHHHHHHHHHHhHHhhcccceeccCCCccccchHHHHHHHHhhhhhHHHHHHHHHh
Q psy5830 146 AAGV------PDDEQKGYGLGSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFY 219 (503)
Q Consensus 146 ~aG~------~e~~~kg~GiGnGiSLiI~~gI~~~l~~~~~s~~~~~~~~~~~~~G~~~~~~~~l~~~~~~~~~i~~~~~ 219 (503)
++|+ ||+++| ||+|||+|++|++|||+++|+++++..+ + + .|.+
T Consensus 165 ~aGt~~lmwL~E~It~-~GiGnGiSliI~~gI~~~lp~~~~~~~~---~---~-~~~~---------------------- 214 (431)
T 3din_C 165 LAGTMFLLWLGERITE-KGIGNGISILIFAGIVARYPSYIRQAYL---G---G-LNLL---------------------- 214 (431)
T ss_dssp HHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHHSTTSSSCCSS---C---C-SCTH----------------------
T ss_pred HHHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHHHHHhc---c---c-ccHH----------------------
Confidence 5665 999999 9999999999999999999999877532 1 1 1221
Q ss_pred hcCchhHHHHHHHHHHHHHHHhhcCeEEEeeceeccc-c-----CCcccc-eeccccccChhHHHHHHHHHHHHHHhhcc
Q psy5830 220 RQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARY-R-----GQYSSY-PIKLFYTSNIPIILQSALVSNLCLLSSSM 292 (503)
Q Consensus 220 ~~~lp~l~~~i~~v~v~~~vv~~~~~~~~IPi~~~r~-~-----g~~~~y-PiKln~aGvmPiIfasall~~p~~i~~~~ 292 (503)
+++..+++++++++++||+|++|||||+||+|+ . +++++| |+|+||+|+||+||||+++++|++++
T Consensus 215 ----~~l~~l~~~l~vi~~vV~~~~~~rrIPvqyakr~~g~~~~~g~~~~iPlKln~aGvmPiIfassll~~p~~i~--- 287 (431)
T 3din_C 215 ----EWIFLIAVALITIFGIILVQQAERRITIQYARRVTGRRVYGGASTYLPIKVNQGGVIPIIFASAIVSIPSAIA--- 287 (431)
T ss_dssp ----HHHHHHHHHHHHHHHHTTTCCBCCCCCCCBTTTBCCCCCCCCCCCCCCCCCCCCCSSHHHHHHHHHHHHHHHT---
T ss_pred ----HHHHHHHHHHHHHHHHHhheeeEEEEEEEechhhccccccCCCcceeeeeecccCchHHHHHHHHHHHHHHHH---
Confidence 335677788888999999999999999999975 1 235677 99999999999999999999999987
Q ss_pred CCccchhhhhhhHHHHHHHHHHHHHHhhcccCCCchhhHHHHHHHhccCcchhcccccccccCCCCCCCccccccccccc
Q psy5830 293 GTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWADVGGGGPARAYPIGGLCYYL 372 (503)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~gl~~~l 372 (503)
+++ ++ +|. .+|+
T Consensus 288 ----------------------------------------~~~-----~~-------~~~----------------~~~~ 299 (431)
T 3din_C 288 ----------------------------------------SIT-----NN-------ETL----------------KNLF 299 (431)
T ss_dssp ----------------------------------------TSS-----TT-------CCC----------------CCCS
T ss_pred ----------------------------------------HHc-----ch-------HHH----------------HHHc
Confidence 211 11 221 1234
Q ss_pred CCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHcCcccceecCc-hhHHHHHhhhhhhhhhh
Q psy5830 373 SPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQ-SMIHELNRYIPTAAAFG 451 (503)
Q Consensus 373 spp~~~~~~~~~p~~~ivY~i~ii~fs~~fs~~~i~~sg~~p~diA~~Lkk~g~~IpGiRpg-~t~~yL~k~i~~~t~~G 451 (503)
+| .+|+|.++|++++++||+||+.+.+ ||||+||||||+|++|||+||| +|+|||+|+++|+|++|
T Consensus 300 ~~--------~~~~y~~~y~~lii~Fs~fy~~i~~-----np~diA~~lkk~G~~IpGiRpG~~T~~yL~~vi~rit~~G 366 (431)
T 3din_C 300 RA--------GGFLYLLIYGLLVFFFTYFYSVVIF-----DPREISENIRKYGGYIPGLRPGRSTEQYLHRVLNRVTFIG 366 (431)
T ss_dssp ST--------THHHHHHHHHHHHHHHHHHHHTCTT-----HHHHHTTSCCCCBCSSCCCCCTTHHHHHHHHHHHHHHHHH
T ss_pred CC--------CcHHHHHHHHHHHHHHHHHHHHHhc-----CHHHHHHHHHHCCCcCCCCCCChhHHHHHHHHHHHHHHHh
Confidence 43 3689999999999999999998887 9999999999999999999999 59999999999999999
Q ss_pred HHHHHHHHHHHHHHcc-cC-----cccchhHHHHHHHHHHHHHHHhhh
Q psy5830 452 GLCIGALSVLADFMGA-IG-----SGTGILLAVTIIYQYFEIFVKEQS 493 (503)
Q Consensus 452 ~~~l~~ia~lp~llg~-~g-----~GTsiLI~V~vi~~~~~qi~~e~~ 493 (503)
|+|++++|++|++++. .| ||||+||+||+++|++||++++..
T Consensus 367 a~~L~~iavlp~~~~~~~g~~~~~gGTslLI~Vgv~l~~~~qi~s~~~ 414 (431)
T 3din_C 367 AVFLVVIALLPYLVQGAIKVNVWIGGTSALIAVGVALDIIQQMETHMV 414 (431)
T ss_dssp HHHHHHHHHHHHHHTTTSCCSCCTTHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccccchhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999975 33 899999999999999999999864
No 9
>2nsc_A Trigger factor, TF; chaperone; 2.20A {Thermotoga maritima} PDB: 2nsb_A
Probab=35.84 E-value=18 Score=30.47 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=15.5
Q ss_pred HHHHHHcCcccceecCch-hHHHHHhhh
Q psy5830 418 AKQLKEQQMVMRGHREQS-MIHELNRYI 444 (503)
Q Consensus 418 A~~Lkk~g~~IpGiRpg~-t~~yL~k~i 444 (503)
-++++| ...|||+|||+ -.+.+++..
T Consensus 32 ~~~~~k-~~~ipGFRkGKvP~~vi~k~y 58 (109)
T 2nsc_A 32 VRYLNQ-RVEIPGFRKGRIPKNVLKMKL 58 (109)
T ss_dssp HHHHHT-TCCCTTSCTTCCCHHHHHHHH
T ss_pred HHHHhc-cCCCCCcCCCCCCHHHHHHHH
Confidence 334433 47899999995 234344433
No 10
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=33.17 E-value=17 Score=30.82 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=12.8
Q ss_pred HHHHHHHHcCcccceecCch
Q psy5830 416 DVAKQLKEQQMVMRGHREQS 435 (503)
Q Consensus 416 diA~~Lkk~g~~IpGiRpg~ 435 (503)
+.-++++| ...|||+|||+
T Consensus 29 ~~~~~~~k-~~~ipGFRkGK 47 (112)
T 2d3o_1 29 QVWAGLAR-DVRVPGFRPGK 47 (112)
T ss_dssp HHHHHHHT-TSCBTTBCTTC
T ss_pred HHHHHHHh-hCCCCCcCCCC
Confidence 33444444 37899999995
No 11
>1rh5_A Preprotein translocase SECY subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.41.1.1 PDB: 1rhz_A 2yxq_A 3dkn_A 2yxr_A 3bo0_A 3bo1_A 3kcr_A
Probab=32.07 E-value=13 Score=39.30 Aligned_cols=24 Identities=17% Similarity=0.164 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHH-HHH
Q psy5830 385 PIHAILYIVFMLGSCAFFSKT-WIE 408 (503)
Q Consensus 385 p~~~ivY~i~ii~fs~~fs~~-~i~ 408 (503)
++|.++|++++++||+||+.+ .++
T Consensus 317 ~~y~~~~~~lii~Fs~fy~~is~~n 341 (436)
T 1rh5_A 317 IVYMIAMIITCVMFGIFWVETTGLD 341 (436)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 899999999999999999999 453
No 12
>1p9y_A Trigger factor, TF; alpha-beta protein, isomerase; 2.15A {Escherichia coli} SCOP: d.241.2.1 PDB: 1oms_A*
Probab=29.00 E-value=27 Score=29.97 Aligned_cols=25 Identities=8% Similarity=0.185 Sum_probs=15.1
Q ss_pred HHHHHcCcccceecCch-hHHHHHhhh
Q psy5830 419 KQLKEQQMVMRGHREQS-MIHELNRYI 444 (503)
Q Consensus 419 ~~Lkk~g~~IpGiRpg~-t~~yL~k~i 444 (503)
++++| ...|||+|||+ -.+.+++..
T Consensus 36 ~~~~k-~v~ipGFRkGKvP~~vi~k~y 61 (121)
T 1p9y_A 36 VNVAK-KVRIDGLRKGKVPMNIVAQRY 61 (121)
T ss_dssp HHHHT-TCCCTTSCTTCSCHHHHHHHH
T ss_pred HHHHh-hCccCCcCCCCCCHHHHHHHH
Confidence 33433 47899999995 234344433
No 13
>3mp7_A Preprotein translocase subunit SECY; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus} SCOP: f.41.1.0
Probab=25.68 E-value=27 Score=37.25 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHHHcCcccceec--CchhHHHHHhh
Q psy5830 384 DPIHAILYIVFMLGSCAFFSKT-WIEVSGSSAKDVAKQLKEQQMVMRGHR--EQSMIHELNRY 443 (503)
Q Consensus 384 ~p~~~ivY~i~ii~fs~~fs~~-~i~~sg~~p~diA~~Lkk~g~~IpGiR--pg~t~~yL~k~ 443 (503)
.++|.++|++++++||+||+.+ .++-.. -+|+.-||=----+.=||-+ ....++|+.|.
T Consensus 348 ~~~Y~~~~~~lii~Fs~fy~~is~~np~d-iA~nlkk~G~~IpGiRpG~~tt~~yL~~vi~ri 409 (482)
T 3mp7_A 348 AIVYLILTVIFSLLFGYLWVELTGLDARS-IARQLQRAGLQIPGFRRDPRTLEKVLQRYIPYV 409 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSTTGGG-CCC--------CCTTTTTTSTTCC------CTH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCHHH-HHHHHHHcCCccCCcCCCchhHHHHHHHHHHHH
Confidence 5789999999999999999999 776554 55566565544444455543 22355565554
Done!