RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5830
(503 letters)
>gnl|CDD|185519 PTZ00219, PTZ00219, Sec61 alpha subunit; Provisional.
Length = 474
Score = 749 bits (1936), Expect = 0.0
Identities = 325/515 (63%), Positives = 385/515 (74%), Gaps = 65/515 (12%)
Query: 1 MGIKFLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSA 60
+FL +++P +ILPE+A+P+ RKI F+EKVLWTAI LF+FLVCCQIPL+GI SS S+
Sbjct: 3 KMTRFLNLLRPAMAILPEVAEPD-RKIPFKEKVLWTAIALFVFLVCCQIPLYGIRSSSSS 61
Query: 61 DPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKL 119
DPFYW+RVILASNRGTLMELGISPIVTS ++MQLLAG+K+I+V + +DRALF GAQKL
Sbjct: 62 DPFYWMRVILASNRGTLMELGISPIVTSSMVMQLLAGSKIIDVDQNNKEDRALFEGAQKL 121
Query: 120 FGMVITVGQAIVYVMTGMYGDPSEIGA------------AGVPD---DE--QKGYGLGSG 162
G++IT+G+A+ YV +GMYGD SEIGA AG+ DE QKGYGLGSG
Sbjct: 122 LGLLITLGEAVAYVWSGMYGDISEIGAGNAILIILQLFFAGIVVILLDELLQKGYGLGSG 181
Query: 163 ISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQN 222
ISLFIATNICETI+WKAFSP T+NTGRGTEFEGA+IALFHLL TR DK+RAL+EAFYR +
Sbjct: 182 ISLFIATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLLFTRSDKLRALKEAFYRPH 241
Query: 223 LPNLMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALV 282
LPNL NLLATVLVF +VIYFQGFRVDLP+KS + RGQ SYPIKLFYTSNIPIILQ+ALV
Sbjct: 242 LPNLTNLLATVLVFLVVIYFQGFRVDLPLKSQKVRGQQQSYPIKLFYTSNIPIILQTALV 301
Query: 283 SNLCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGN 342
SNL S +L +F N
Sbjct: 302 SNLYFFSQ-------------------------------------------ILYRRFKNN 318
Query: 343 IFVNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFF 402
+NLLG+W +V G ++ P+GGL YYLSPP + I+ DPIH ILYIVF+L SCA F
Sbjct: 319 FLINLLGQWQEVEYSG--QSVPVGGLAYYLSPPNSFSDIINDPIHTILYIVFVLFSCALF 376
Query: 403 SKTWIEVSGSSAKDVAKQLKEQQMVMRGHREQ-SMIHELNRYIPTAAAFGGLCIGALSVL 461
SKTWIEVSGSSAKDVAKQLK+Q M M G+R+ SM+ LNRYIPTAA+FGG+CIGAL++L
Sbjct: 377 SKTWIEVSGSSAKDVAKQLKDQGMGMVGYRDSSSMVRVLNRYIPTAASFGGMCIGALTIL 436
Query: 462 ADFMGAIGSGTGILLAVTIIYQYFEIFVKEQSEMG 496
ADF+GAIGSGTGILLAVTIIYQY+E F KE+ + G
Sbjct: 437 ADFLGAIGSGTGILLAVTIIYQYYETFAKEKEQYG 471
>gnl|CDD|236293 PRK08568, PRK08568, preprotein translocase subunit SecY; Reviewed.
Length = 462
Score = 344 bits (884), Expect = e-114
Identities = 166/513 (32%), Positives = 250/513 (48%), Gaps = 85/513 (16%)
Query: 5 FLEVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFY 64
FL+ ++P LP + +P+ + F+EK+ WTAI L ++ + IPL+GI S S D F
Sbjct: 3 FLDKLEPILERLPAVKRPK-GHVPFKEKLKWTAIVLILYFILTNIPLYGI-SQSSQDLFE 60
Query: 65 WIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMV 123
+R+I A + GTL++LGI PIVT+G+I+QLL G+KLI + P+DRALF G QKL +V
Sbjct: 61 LLRIIFAGSFGTLLQLGIGPIVTAGIILQLLVGSKLINLDLSDPEDRALFQGLQKLLAIV 120
Query: 124 ITVGQAIVYVMTGMYG-DPSEIGAAGVP-----------------DDEQKGYGLGSGISL 165
+ +A +V+ G +G + D+ +G+GSGISL
Sbjct: 121 MIALEAAPFVLAGAFGPATGLASTPLLALLIFLQLFLGGILIILLDELVSKWGIGSGISL 180
Query: 166 FIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPN 225
FI + +TI F+ T G + ALF + +
Sbjct: 181 FILAGVSQTIFVGLFNWLTGG---QGLPVGFIPALFSAITSGN----LTLALLLTTRGLL 233
Query: 226 LMNLLATVLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNL 285
L+ L+ T+++F IV+Y + RV++P+ R RG YP+K Y S +P+IL AL +N+
Sbjct: 234 LLGLITTIVIFLIVVYLESMRVEIPLSHGRVRGARGRYPLKFIYVSVLPVILVRALQANI 293
Query: 286 CLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFV 345
L G +L + +
Sbjct: 294 QLF--------------GQLLQ----------------------------------RLGI 305
Query: 346 NLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKT 405
+LG + G PI GL YYLSPP + ++DP+ AI+Y +FM+ F+
Sbjct: 306 PILGTYDSSGAS------PISGLAYYLSPPHSPYDWIQDPLRAIIYALFMIVLSILFAIF 359
Query: 406 WIEVSGSSAKDVAKQLKEQQMVMRGHR--EQSMIHELNRYIPTAAAFGGLCIGALSVLAD 463
W+E +G K A+QL+ M + G R + + L RYIP GG +G L+VLAD
Sbjct: 360 WVETTGLDPKTQARQLQNSGMQIPGFRRNPKVIEKVLERYIPPVTVIGGAIVGLLAVLAD 419
Query: 464 FMGAIGSGTGILLAVTIIYQYFEIFVKEQ-SEM 495
+GA+G GTG+LL V+I+YQ +E +EQ EM
Sbjct: 420 LLGALGGGTGLLLTVSIVYQLYEEIAREQLMEM 452
>gnl|CDD|233214 TIGR00967, 3a0501s007, preprotein translocase, SecY subunit.
Members of this protein family are the SecY component of
the SecYEG translocon, or protein translocation pore,
which is driven by the ATPase SecA. This model does not
discriminate bacterial from archaeal forms [Protein
fate, Protein and peptide secretion and trafficking].
Length = 410
Score = 219 bits (559), Expect = 3e-66
Identities = 88/302 (29%), Positives = 134/302 (44%), Gaps = 56/302 (18%)
Query: 30 REKVLWTAITLFIFLVCCQIPLFGIMSS------DSADPFYWIRVILASNRG--TLMELG 81
REK+L+T L +F + IP+ GI +S F + G ++ LG
Sbjct: 1 REKLLFTLGLLVLFRIGTFIPIPGIDASAFQNLIQQNPIFGLLNTFSGGALGQISIFALG 60
Query: 82 ISPIVTSGLIMQLLAGAKL----IEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGM 137
ISP +T+ +I+QLL G ++ + R N + +++ Q++ VMTGM
Sbjct: 61 ISPYITASIIIQLLTGDVPPLLQLQKKEGEIGRRKINQLTRYLTLILAFIQSLGIVMTGM 120
Query: 138 YGDPSEIGA-----------AGVP-----DDEQKGYGLGSGISLFIATNICETIVWKAFS 181
YG + GA G ++ YG+G+GISL I I TI
Sbjct: 121 YGYVGDPGAFFYLLIVIQLTTGSMIVMWLGEQITKYGIGNGISLLIFAGIAATIPSGLLQ 180
Query: 182 PATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAIVIY 241
P V RQ KVR L LP L+ L+AT++VFA+V++
Sbjct: 181 PTEV---------------------RQSKVRDLISFLQN--LPFLLYLIATIIVFAVVVF 217
Query: 242 FQGFRVDLPIKSARYRG-----QYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGTSL 296
Q R +PI+SA+ +G Q + P+KL Y IP+I SAL+SN +S + ++
Sbjct: 218 VQQARRKIPIQSAKRQGGRRGSQSTYLPLKLNYAGVIPVIFASALLSNPATISQFLNSNQ 277
Query: 297 ST 298
Sbjct: 278 GG 279
Score = 119 bits (301), Expect = 2e-29
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 16/135 (11%)
Query: 367 GLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQM 426
G ++L+P +L L DPI AILY++ FFS ++E+ + +D+AK LK+Q M
Sbjct: 278 GGAWFLNPILSLS--LSDPIGAILYLIL----IIFFSFFYVEL-QLNPEDMAKNLKKQGM 330
Query: 427 VMRGHREQSMI-HELNRYIPTAAAFGGLCIGALSVLADFMGAIGS--------GTGILLA 477
+ G R M L R IP G L +G +++L +F+GAIG GT +L+
Sbjct: 331 FIPGIRPGKMTEKYLKRVIPRLTFVGSLFLGLIALLPNFLGAIGGLPTSKGLGGTSLLIV 390
Query: 478 VTIIYQYFEIFVKEQ 492
V + ++ E
Sbjct: 391 VGVAIDTYKQLESEL 405
>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
trafficking and secretion].
Length = 436
Score = 170 bits (433), Expect = 1e-47
Identities = 80/323 (24%), Positives = 136/323 (42%), Gaps = 61/323 (18%)
Query: 11 PFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVIL 70
P +LPE+ P+ + + R+++L+T L ++ + IP+ GI + +D F R ++
Sbjct: 1 PLLPLLPEVLSPKFKVPELRKRILFTLGALIVYRIGSFIPVPGINPAALSDLFNSQRFLI 60
Query: 71 --------ASNRGTLMELGISPIVTSGLIMQLL-AGAKLIEVGDT--PKDRALFNGAQKL 119
A +RG++ LGI P +T+ +IMQLL G+ +++ D + R +
Sbjct: 61 LFNMFSGGALSRGSIFALGIMPYITASIIMQLLTVGSPILKKLDKEGEEGRRKIQQYTRY 120
Query: 120 FGMVITVGQAIVYVMTGMYGDPSEIGAAGVPD-------------------DEQ-KGYGL 159
+V+ V QA+ V+ G G G EQ G+
Sbjct: 121 LTLVLAVIQALGVVLGGNNGGSPSDVGNGGIFFYLLIILQLTAGTMFLMWLGEQITKRGI 180
Query: 160 GSGISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFY 219
G+GISL I I ++ F GA+ A +
Sbjct: 181 GNGISLIIFAGIVASLPSAIFGI-----------IGALPTG----------------ALF 213
Query: 220 RQNLPNLMNLLATVLVFAIVIYFQGFRVDLPIKSAR---YRGQYSSYPIKLFYTSNIPII 276
L L+ +L T+ + +V+Y + R +PI+ A+ YRGQ S P+KL Y IP+I
Sbjct: 214 LSILFLLLLVLLTLAIIFLVVYVEQARRRIPIQYAKRQSYRGQSSYLPLKLNYAGVIPVI 273
Query: 277 LQSALVSNLCLLSSSMGTSLSTY 299
S+L+ ++ +G Y
Sbjct: 274 FASSLLLFPSTIAQFLGNGGLAY 296
Score = 95.4 bits (238), Expect = 4e-21
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 10/140 (7%)
Query: 360 ARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAK 419
A+ GGL YYLSP ++ L + +YI + FFS + E+ + +++A+
Sbjct: 286 AQFLGNGGLAYYLSPLTSISDAL--SPGSPVYIALYVVLIIFFSYFYTEIQFN-PEEIAE 342
Query: 420 QLKEQQMVMRGHR-EQSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIG------SGT 472
LK+ + G R + LNR IP G L +G +++L + +G G GT
Sbjct: 343 NLKKSGGFIPGIRPGKDTEKYLNRVIPRLTFIGALFLGLIAILPELLGTAGGVPFYFGGT 402
Query: 473 GILLAVTIIYQYFEIFVKEQ 492
+L+ V + +E E
Sbjct: 403 SLLIVVGVALDTYEQIEAEL 422
>gnl|CDD|215869 pfam00344, SecY, SecY translocase.
Length = 340
Score = 156 bits (397), Expect = 2e-43
Identities = 81/279 (29%), Positives = 120/279 (43%), Gaps = 59/279 (21%)
Query: 76 TLMELGISPIVTSGLIMQLL--AGAKLIEVG-DTPKDRALFNGAQKLFGMVITVGQAIVY 132
++ LGI P +T+ +IMQLL G KL ++ + + R + +V+ + QAI
Sbjct: 1 SIFALGIGPYITASIIMQLLTVVGPKLEKLDKEGEEGRKKIQQYTRYLTLVLALIQAIGI 60
Query: 133 VMT-GMYGDPSEIGAAGVPD--------------------DEQ--KGYGLGSGISLFIAT 169
V+ G YG S GV E K YG+G+GISL I
Sbjct: 61 VLGLGSYGAFSNGIVLGVGFLNLLLIVLQLTAGTMFLMWLGELITK-YGIGNGISLIIFA 119
Query: 170 NICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNL 229
I +I W A+I LF LL++ L Y L+ L
Sbjct: 120 GIVASIPW------------------AIINLFSLLSSA----GGLLSILY-----LLLLL 152
Query: 230 LATVLVFAIVIYFQGFRVDLPIKSAR-----YRGQYSSYPIKLFYTSNIPIILQSALVSN 284
LAT+ V +V+Y Q R +PI+ A+ RGQ S PIKL Y IPII S+L++N
Sbjct: 153 LATLAVILLVVYLQEARRRIPIQYAKRVVGGGRGQSSYLPIKLNYAGVIPIIFASSLLAN 212
Query: 285 LCLLSSSMGTSLSTYLENGLMLVVVAQHVLILLVVSATI 323
++ +G+S + +GL + + +L I
Sbjct: 213 PQTIAQFLGSSFPLWPVSGLAYYLPIGSPVYILFYIVLI 251
Score = 106 bits (268), Expect = 2e-25
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 16/127 (12%)
Query: 363 YPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLK 422
+P+ GL YYL PI + +YI+F + FFS + G + KD+A+ LK
Sbjct: 227 WPVSGLAYYL------------PIGSPVYILFYIVLIIFFSYFYT-AIGFNPKDIAENLK 273
Query: 423 EQQMVMRGHRE-QSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIG--SGTGILLAVT 479
+ + G R +S LNR IP G + +G ++VL D +GA+G GT +L+AV
Sbjct: 274 KSGGFIPGIRPGKSTEKYLNRVIPRLTFIGAIFLGLIAVLPDLLGALGGFGGTSLLIAVG 333
Query: 480 IIYQYFE 486
+ +E
Sbjct: 334 VALDTYE 340
>gnl|CDD|204513 pfam10559, Plug_translocon, Plug domain of Sec61p. The
Sec61/SecY translocon mediates translocation of
proteins across the membrane and integration of
membrane proteins into the lipid bilayer. The structure
of the translocon revealed a plug domain blocking the
pore on the lumenal side.The plug is unlikely to be
important for sealing the translocation pore in yeast
but it plays a role in stabilising Sec61p during
translocon formation. The domain runs from residues
52-74.
Length = 35
Score = 62.8 bits (154), Expect = 4e-13
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 41 FIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRG 75
++LV QIPL+G+ SSDS+DPFYW+R ILASNRG
Sbjct: 1 LLYLVLSQIPLYGLYSSDSSDPFYWLRAILASNRG 35
>gnl|CDD|236412 PRK09204, secY, preprotein translocase subunit SecY; Reviewed.
Length = 426
Score = 35.5 bits (83), Expect = 0.059
Identities = 65/310 (20%), Positives = 103/310 (33%), Gaps = 99/310 (31%)
Query: 30 REKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLME---------- 79
R+++L+T L +F + IP+ GI D A + + G ++
Sbjct: 15 RKRILFTLGALIVFRIGSYIPVPGI---DPAA----LAQLFDQQSGGILGLFNLFSGGAL 67
Query: 80 -------LGISPIVTSGLIMQLLAGA--------KLIEVGDTPKDRALFNGAQKLFGMVI 124
LGI P +T+ +IMQLL K E G R N + +V+
Sbjct: 68 SRFSIFALGIMPYITASIIMQLLTVVIPKLEELKKEGEAG-----RRKINQYTRYLTVVL 122
Query: 125 TVGQAIVYVMTGMYGDPSEIGAAGVPDD----------------------EQ-KGYGLGS 161
Q+I G+ G +P EQ G+G+
Sbjct: 123 AFVQSIGIAA-GLNSMSGGGGLVPIPPGFFFYLTIVITLTAGTMFLMWLGEQITERGIGN 181
Query: 162 GISLFIATNICETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQ 221
GISL I I + A T R V L
Sbjct: 182 GISLIIFAGIVAGLP-SAIG-QTFELARTGSLSILVFLLL-------------------- 219
Query: 222 NLPNLMNLLATVLVFAIVIYF-QGFRVDLPIKSAR-------YRGQYSSYPIKLFYTSNI 273
++ + V A V++ Q R +P++ A+ Y GQ S P+K+ I
Sbjct: 220 -------IVLFLAVIAFVVFVEQAQR-RIPVQYAKRQVGRKMYGGQSSYLPLKVNMAGVI 271
Query: 274 PIILQSALVS 283
P+I S+++
Sbjct: 272 PVIFASSILL 281
>gnl|CDD|237095 PRK12417, secY, preprotein translocase subunit SecY; Reviewed.
Length = 404
Score = 33.0 bits (76), Expect = 0.31
Identities = 24/110 (21%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 32 KVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRG------TLMELGISPI 85
K+L+T LFI+++ I + + +D I A+N G + LG+ P
Sbjct: 15 KILFTCFILFIYILGSNISIPFVSYNDMLGGHESFLKIAAANTGGDLRTLNIFSLGLGPW 74
Query: 86 VTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMT 135
+TS +I+QL + K + + + +++ ++I V Q++ +++
Sbjct: 75 MTSMIILQLFSYRKRDGLMKQTIEEQHYR--ERILTLIIAVIQSLAVILS 122
>gnl|CDD|200398 TIGR04147, GGGPS_Halobact, phosphoglycerol
geranylgeranyltransferase, putative. In most archaea,
phosphoglycerol geranylgeranyltransferase (EC 2.5.1.41),
also known as GGGP synthase and GGGPS, catalyzes the
stereospecific first step in the biosynthesis of their
characteristic membrane diether lipids. However, some
groups of archaeal GGGPS homologs are more closely
related to certain bacterial proteins than to each
other. This family represents the putative GGGPS family
as found in the Halobacteria.
Length = 229
Score = 32.9 bits (75), Expect = 0.32
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 106 TPKDRALF-NGAQKLFGMVITVGQAIVYV-MTGMYGDPSEIGAA-GVPDDEQKGYGLG 160
T D A + A+++ G Q IVYV +G +GDP ++ AA D+ YG G
Sbjct: 137 TADDVAAYAEVAERMLG------QEIVYVEYSGTFGDPKKVAAAAEALDEATLFYGGG 188
>gnl|CDD|234493 TIGR04189, surface_SprA, cell surface protein SprA. SprA is a cell
surface protein widely distributed in the Bacteroidetes
lineage. In Flavobacterium johnsoniae, a species that
shows gliding motility, mutation disrupts gliding.
Length = 2315
Score = 30.0 bits (68), Expect = 3.5
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 99 KLIEVGDT--PKDRALFNGAQKLFGM 122
+ IE G+ P + +L GAQ LFG+
Sbjct: 180 QRIEAGNVSMPLNSSLIRGAQSLFGI 205
>gnl|CDD|227634 COG5324, COG5324, Uncharacterized conserved protein [Function
unknown].
Length = 758
Score = 29.9 bits (67), Expect = 3.7
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 238 IVI--YFQGFRVD-LPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSMGT 294
IVI Y + F + I Y +Y++ P ++ N II S L + L+SS +
Sbjct: 77 IVIRGYDKFFNYGEVNITLWDYLYKYATGPYRVTKKYNGCIIFISVLNDGVVLVSSKHSS 136
>gnl|CDD|183828 PRK12907, secY, preprotein translocase subunit SecY; Reviewed.
Length = 434
Score = 29.6 bits (66), Expect = 4.3
Identities = 64/282 (22%), Positives = 116/282 (41%), Gaps = 33/282 (11%)
Query: 25 RKIQFREKVLWTAITLFIFLVCCQIPLFGIMS-----SDSADPFYWIRVIL--ASNRGTL 77
R + R K+L+T L +F + IP+ + D A+ + V A ++
Sbjct: 10 RVAEIRRKILFTLAMLIVFRIGTFIPVPHTNAEVLKVQDQANVLGMLNVFGGGALQHFSI 69
Query: 78 MELGISPIVTSGLIMQLLAGAKLIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGM 137
+GI+P +T+ +I+QLL + + + K + F T+ A + +
Sbjct: 70 FAVGITPYITASIIVQLLQMDVIPKFSEWAKQGEMGRKKSAQFTRYFTIILAFIQAIGMS 129
Query: 138 YGDPSEIGAAGVPDDEQKGYGLGSGISLFIATNICET---IVWKAFSPATVNTGRGTE-- 192
YG + G + D Y LFIAT + ++W G G
Sbjct: 130 YGFNNIAGGQLITDQSWTTY-------LFIATVLTAGTAFLLWLGEQITANGVGNGISML 182
Query: 193 -FEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATVLVFAI---VIYFQGFRVD 248
F G V A+ ++ Q ++ + A + + + LL +++ AI VIY Q
Sbjct: 183 IFAGLVAAIPNV--ANQIYLQQFQNAGDQLFMHIIKMLLIGLVILAIVVGVIYIQQAVRK 240
Query: 249 LPIKSAR-------YRGQYSSY-PIKLFYTSNIPIILQSALV 282
+PI+ A+ Y+G +++ P+K+ IP+I SA +
Sbjct: 241 IPIQYAKAVSGNNQYQGAKNTHLPLKVNSAGVIPVIFASAFL 282
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.142 0.426
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,362,868
Number of extensions: 2672474
Number of successful extensions: 3484
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3441
Number of HSP's successfully gapped: 50
Length of query: 503
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 402
Effective length of database: 6,457,848
Effective search space: 2596054896
Effective search space used: 2596054896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.2 bits)