RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5830
         (503 letters)



>d1rh5a_ f.41.1.1 (A:) Preprotein translocase SecY subunit {Archaeon
           Methanococcus jannaschii [TaxId: 2190]}
          Length = 422

 Score =  315 bits (809), Expect = e-104
 Identities = 146/503 (29%), Positives = 244/503 (48%), Gaps = 97/503 (19%)

Query: 7   EVIKPFCSILPEIAKPEGRKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWI 66
           + + P    +PE+  P  ++I F+EK+ WT I L ++ +   I ++   +      F + 
Sbjct: 1   KKLIPILEKIPEVELPV-KEITFKEKLKWTGIVLVLYFIMGCIDVYTAGAQIP-AIFEFW 58

Query: 67  RVILASNRGTLMELGISPIVTSGLIMQLLAGAKLIEVG-DTPKDRALFNGAQKLFGMVIT 125
           + I AS  GTL+ LGI PIVT+G+IMQLL G+ +I++    P++RALF G QKL  +++ 
Sbjct: 59  QTITASRIGTLITLGIGPIVTAGIIMQLLVGSGIIQMDLSIPENRALFQGCQKLLSIIMC 118

Query: 126 VGQAIVYVMTGMYGDPSEIGAAGVP-------------DDEQKGYGLGSGISLFIATNIC 172
             +A+++V  G +G  + + A  V              D+    YG+GSGI LFIA  + 
Sbjct: 119 FVEAVLFVGAGAFGILTPLLAFLVIIQIAFGSIILIYLDEIVSKYGIGSGIGLFIAAGVS 178

Query: 173 ETIVWKAFSPATVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLAT 232
           +TI   A  P           EG +    + L                 N+  +  ++ T
Sbjct: 179 QTIFVGALGP-----------EGYLWKFLNSLIQG------------VPNIEYIAPIIGT 215

Query: 233 VLVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLCLLSSSM 292
           ++VF +V+Y +  RV++P+   R +G    YPIK  Y SNIP+IL +AL +N+ L   ++
Sbjct: 216 IIVFLMVVYAECMRVEIPLAHGRIKGAVGKYPIKFVYVSNIPVILAAALFANIQLWGLAL 275

Query: 293 GTSLSTYLENGLMLVVVAQHVLILLVVSATICPHPRTWLQLMLAVKFHGNIFVNLLGEWA 352
                                                             + + +LG + 
Sbjct: 276 Y------------------------------------------------RMGIPILGHYE 287

Query: 353 DVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSKTWIEVSGS 412
                       + G+ YYLS P  L  ++ DPIHAI+Y++ M+ +C  F   W+E +G 
Sbjct: 288 G--------GRAVDGIAYYLSTPYGLSSVISDPIHAIVYMIAMIITCVMFGIFWVETTGL 339

Query: 413 SAKDVAKQLKEQQMVMRGHR--EQSMIHELNRYIPTAAAFGGLCIGALSVLADFMGAIGS 470
             K +AK++    M ++G R  E+++ H L RYIP         +G L+ +A+F+GA+G 
Sbjct: 340 DPKSMAKRIGSLGMAIKGFRKSEKAIEHRLKRYIPPLTVMSSAFVGFLATIANFIGALGG 399

Query: 471 GTGILLAVTIIYQYFEIFVKEQS 493
           GTG+LL V+I+Y+ +E  ++E++
Sbjct: 400 GTGVLLTVSIVYRMYEQLLRERT 422


>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK)
           {Streptococcus pneumoniae r6 [TaxId: 171101]}
          Length = 194

 Score = 31.0 bits (69), Expect = 0.19
 Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)

Query: 334 MLAVKFHGNIFVNLLGEWADVGGGGPARAYPI 365
           M+AVK  G   +   GE+A +  G  A    I
Sbjct: 1   MIAVKTCGK--LYWAGEYAILEPGQLALIKDI 30


>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 215

 Score = 26.8 bits (58), Expect = 5.7
 Identities = 22/167 (13%), Positives = 34/167 (20%), Gaps = 12/167 (7%)

Query: 345 VNLLGEWADVGGGGPARAYPIGGLCYYLSPPENLGHILEDPIHAILYIVFMLGSCAFFSK 404
           VNL+GE  D    G      +  +   +  P   G +    +              F   
Sbjct: 37  VNLIGEHTDY-NQGLVLPMALELMTVLVGSPRKDGLVS---LLTTSEGADEPQRLQFPLP 92

Query: 405 TWIEVSGSSAKDVAKQLKEQQMVMRGHREQSMIHELNRYIPTAAAFGGLCIGALSVLADF 464
           T            A  +K                 +   +P            ++     
Sbjct: 93  TAQRSLEPGTPRWANYVKGVIQYYPAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFL 152

Query: 465 MGAIGSGTGILLAVTIIYQYFEIFVKEQ--------SEMGGMGTLLF 503
                    I     +  Q    F            S MG  G  L 
Sbjct: 153 QQLCPDSGTIAARAQVCQQAEHSFAGMPCGIMDQFISLMGQKGHALL 199


>d1lnsa1 a.40.2.1 (A:1-145) X-Prolyl dipeptidyl aminopeptidase PepX,
           N-terminal domain {Lactococcus lactis [TaxId: 1358]}
          Length = 145

 Score = 26.2 bits (58), Expect = 6.6
 Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 2/44 (4%)

Query: 191 TEFEGAVIAL--FHLLATRQDKVRALREAFYRQNLPNLMNLLAT 232
             F+  +  L       +     + + + F  Q+  ++  L AT
Sbjct: 11  KNFDEQLAELDQLGFRWSVFWDEKKILKDFLIQSPSDMTALQAT 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.142    0.426 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,869,435
Number of extensions: 86503
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 201
Number of HSP's successfully gapped: 12
Length of query: 503
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 414
Effective length of database: 1,185,626
Effective search space: 490849164
Effective search space used: 490849164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.1 bits)