Query psy5836
Match_columns 66
No_of_seqs 207 out of 1024
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 19:17:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n8y_C Protooncoprotein; tyros 99.3 9.2E-13 3.1E-17 91.0 3.6 59 2-65 517-586 (608)
2 1yy9_A Epidermal growth factor 99.3 1.2E-12 4.1E-17 90.6 3.2 59 2-65 509-578 (624)
3 1mox_A Epidermal growth factor 99.2 3.2E-12 1.1E-16 86.8 2.6 58 2-65 189-247 (501)
4 2hr7_A Insulin receptor; hormo 99.2 1.6E-11 5.5E-16 83.1 4.1 56 3-65 191-248 (486)
5 1m6b_A C-ER, receptor protein- 99.2 1.5E-11 5E-16 85.2 3.8 57 2-63 508-575 (621)
6 2ahx_A P180ERBB4, receptor tyr 99.2 1.4E-11 4.6E-16 85.2 3.2 59 2-64 506-575 (617)
7 1n8y_C Protooncoprotein; tyros 99.0 4.4E-10 1.5E-14 77.7 4.0 54 3-63 198-252 (608)
8 3i2t_A Epidermal growth factor 99.0 2.4E-10 8.3E-15 78.4 2.5 58 2-65 190-249 (551)
9 3i2t_A Epidermal growth factor 98.9 5.9E-10 2E-14 76.5 2.7 41 2-42 507-549 (551)
10 1m6b_A C-ER, receptor protein- 98.9 1.6E-09 5.6E-14 75.0 4.3 57 3-65 190-247 (621)
11 2dtg_E Insulin receptor; IR ec 98.9 1.1E-09 3.8E-14 77.5 3.4 56 3-65 191-248 (897)
12 2ahx_A P180ERBB4, receptor tyr 98.8 1.3E-09 4.5E-14 75.4 3.0 44 2-45 563-616 (617)
13 1yy9_A Epidermal growth factor 98.8 2.6E-09 8.9E-14 74.1 3.9 56 3-64 190-246 (624)
14 2hr7_A Insulin receptor; hormo 98.7 9E-10 3.1E-14 74.6 -1.1 60 2-65 235-295 (486)
15 1mox_A Epidermal growth factor 98.6 1.5E-08 5.2E-13 68.8 2.3 60 2-65 234-294 (501)
16 1igr_A Insulin-like growth fac 98.6 1.8E-08 6.2E-13 68.2 2.5 54 4-64 185-240 (478)
17 2dtg_E Insulin receptor; IR ec 98.4 6.7E-08 2.3E-12 68.5 1.6 55 2-65 235-295 (897)
18 1igr_A Insulin-like growth fac 97.4 6.6E-05 2.3E-09 50.9 2.0 57 2-65 228-284 (478)
19 3p0y_A Epidermal growth factor 97.3 8.6E-05 2.9E-09 45.8 1.7 36 18-57 164-205 (214)
20 2hey_R Tumor necrosis factor r 96.5 0.0027 9.1E-08 36.6 3.3 34 30-65 75-111 (146)
21 1ext_A Tumor necrosis factor r 96.3 0.0035 1.2E-07 36.7 3.1 39 7-47 44-94 (162)
22 3alq_R Tumor necrosis factor r 96.3 0.0037 1.3E-07 36.9 3.2 56 7-63 45-116 (173)
23 1du3_A Death receptor 5; trail 96.1 0.0076 2.6E-07 34.2 3.8 34 29-63 75-112 (130)
24 3k51_B Decoy receptor 3; DCR3, 96.0 0.0056 1.9E-07 36.5 3.0 41 7-48 45-95 (176)
25 1sg1_X Tumor necrosis factor r 95.7 0.0088 3E-07 34.7 3.1 55 7-63 38-105 (161)
26 3urf_Z Tumor necrosis factor r 95.5 0.011 3.8E-07 35.1 3.1 41 7-48 43-93 (171)
27 4fhq_A Tumor necrosis factor r 95.5 0.0093 3.2E-07 34.1 2.5 56 7-64 41-114 (134)
28 2uwi_A CRME protein; receptor, 95.3 0.015 5.3E-07 33.4 3.1 56 7-63 40-112 (142)
29 3u3p_A Tumor necrosis factor r 95.2 0.017 5.9E-07 37.5 3.3 41 7-48 49-99 (313)
30 1du3_A Death receptor 5; trail 95.1 0.016 5.5E-07 32.9 2.7 60 4-65 24-93 (130)
31 1jma_B Herpesvirus entry media 95.1 0.027 9.3E-07 33.0 3.7 34 30-64 73-112 (167)
32 3me4_A Tumor necrosis factor r 95.1 0.022 7.5E-07 35.0 3.4 32 30-62 103-136 (216)
33 1jma_B Herpesvirus entry media 94.0 0.047 1.6E-06 32.0 2.9 58 5-64 16-89 (167)
34 3alq_R Tumor necrosis factor r 93.9 0.04 1.4E-06 32.4 2.6 13 34-46 39-51 (173)
35 1sg1_X Tumor necrosis factor r 93.5 0.066 2.3E-06 31.0 3.0 13 51-65 76-88 (161)
36 2e4u_A Metabotropic glutamate 93.5 0.034 1.2E-06 37.3 2.0 48 2-65 483-532 (555)
37 1xu2_R Tumor necrosis factor r 91.1 0.088 3E-06 25.1 1.2 26 6-31 2-28 (47)
38 1klo_A Laminin; glycoprotein; 90.8 0.2 6.8E-06 29.0 2.8 53 7-65 34-99 (162)
39 3u3p_A Tumor necrosis factor r 90.2 0.17 5.8E-06 32.8 2.3 61 3-65 24-99 (313)
40 3tje_F Tumor necrosis factor r 89.5 0.28 9.4E-06 28.6 2.7 25 2-26 41-72 (156)
41 1ext_A Tumor necrosis factor r 88.4 0.39 1.3E-05 27.8 2.8 8 57-64 87-94 (162)
42 1ccv_A AMCI, chymotrypsin inhi 88.4 0.59 2E-05 22.4 3.1 15 41-56 38-52 (56)
43 4fhq_A Tumor necrosis factor r 86.6 0.39 1.3E-05 27.3 2.0 11 52-64 81-91 (134)
44 2hey_R Tumor necrosis factor r 86.2 0.37 1.3E-05 27.4 1.8 23 4-26 18-46 (146)
45 3qd6_R CD40L receptor, tumor n 86.1 0.98 3.4E-05 26.5 3.7 7 58-64 85-91 (177)
46 2gy5_A Angiopoietin-1 receptor 85.1 0.68 2.3E-05 30.7 2.9 9 7-15 188-196 (423)
47 1eai_C Protein (chymotrypsin/e 85.0 0.94 3.2E-05 22.3 2.8 45 6-56 3-56 (61)
48 2p3f_N Anti-coagulant protein 83.7 2.3 7.8E-05 21.9 4.0 21 41-61 51-73 (78)
49 2y38_A Laminin subunit alpha-5 83.2 0.86 3E-05 30.4 2.7 25 36-65 357-381 (403)
50 3ssb_I IMPI alpha, inducible m 77.5 1 3.6E-05 19.5 1.2 14 8-21 9-22 (32)
51 1xu1_R Tumor necrosis factor r 76.9 0.73 2.5E-05 21.4 0.6 31 6-40 2-35 (42)
52 1ata_A Ascaris trypsin inhibit 74.0 6.3 0.00021 19.3 3.8 15 41-56 40-56 (62)
53 3fl7_A Ephrin receptor; ATP-bi 70.3 3.6 0.00012 28.1 3.0 18 8-26 267-284 (536)
54 1rgv_A Ferredoxin; electron tr 68.2 3.7 0.00013 20.2 2.1 22 36-61 35-56 (80)
55 3p5b_L Low density lipoprotein 61.4 13 0.00043 23.9 4.1 49 7-56 24-79 (400)
56 1z6c_A Vitamin K-dependent pro 55.1 14 0.00047 18.6 2.9 14 7-20 28-42 (87)
57 2h9e_C Anti-coagulant protein 54.9 4.6 0.00016 20.9 1.0 13 8-20 52-64 (84)
58 2bz6_L Blood coagulation facto 46.2 8.1 0.00028 18.0 1.0 25 36-61 21-47 (53)
59 1apq_A Complement protease C1R 46.2 6.8 0.00023 17.7 0.8 21 34-55 31-51 (53)
60 1dx5_I Thrombomodulin; serine 42.8 12 0.00041 20.0 1.5 6 58-63 104-109 (118)
61 2jkh_L Factor X light chain; p 40.2 11 0.00039 17.5 1.0 29 33-62 19-49 (55)
62 2kl7_A Fibulin-4; secreted, ca 40.2 11 0.00038 18.7 1.0 8 40-47 56-63 (71)
63 3v65_B Low-density lipoprotein 38.8 13 0.00044 23.6 1.4 48 7-57 27-84 (386)
64 2w2n_E LDL receptor, low-densi 38.7 8.9 0.0003 20.4 0.6 15 7-21 53-67 (107)
65 1x7a_L Coagulation factor IX, 38.6 46 0.0016 18.4 3.6 22 34-56 105-126 (146)
66 1n7d_A LDL receptor, low-densi 36.8 44 0.0015 23.2 3.9 21 35-56 353-373 (699)
67 1kig_L Factor XA; glycoprotein 36.2 13 0.00044 17.1 0.8 23 33-56 16-38 (51)
68 2wph_E Coagulation factor IXA 35.6 12 0.00041 17.9 0.7 21 35-56 20-40 (59)
69 1hx2_A BSTI; beta-sheet disulf 34.0 14 0.00048 17.5 0.8 13 8-20 40-54 (60)
70 3m0c_C LDL receptor, low-densi 31.1 39 0.0013 24.1 2.9 22 34-56 370-391 (791)
71 1kli_L Factor VIIA; extrinsic 28.7 18 0.00062 17.8 0.7 26 35-61 26-53 (69)
72 4aqs_A Laminin subunit beta-1; 28.6 75 0.0026 21.2 3.9 9 7-15 422-430 (525)
73 2csz_A Synaptotagmin-like prot 28.2 24 0.00082 18.2 1.1 14 10-23 35-48 (76)
74 1sop_A Mini-collagen; collagen 24.9 27 0.00094 14.2 0.8 7 3-9 10-16 (26)
75 1dwl_A Ferredoxin I; electron 24.4 26 0.00088 15.5 0.8 10 52-61 45-54 (59)
76 1szb_A Mannose binding lectin- 23.2 23 0.00078 19.9 0.5 22 35-57 147-168 (170)
77 4aqt_A Laminin subunit gamma-1 22.6 34 0.0012 22.4 1.3 7 37-43 363-369 (375)
78 2fdn_A Ferredoxin; electron tr 22.4 34 0.0012 15.1 1.0 13 2-14 12-24 (55)
79 1rof_A Ferredoxin; electron tr 22.1 37 0.0013 14.9 1.1 7 54-60 16-22 (60)
80 3lcz_A YCZA, inhibitor of trap 21.7 34 0.0012 16.1 0.9 19 26-44 11-32 (53)
No 1
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Probab=99.31 E-value=9.2e-13 Score=91.04 Aligned_cols=59 Identities=39% Similarity=0.990 Sum_probs=51.2
Q ss_pred CcccccCCC-----CeeeCCccccccCcccc------ccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836 2 STCVSRCPP-----RSFPNQGGVCWPCHESC------ETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 2 ~~Cv~~C~~-----g~y~~~~~~C~~C~~~C------~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
++||++||. ++|. ..++|.+||++| .+|+||++++|++|+ .++ ++++||..||+|||.+
T Consensus 517 ~~Cv~~C~~~~g~~~~~~-~~~~C~~Ch~~C~~~~~~~~C~Gp~~~~C~~C~--~~~--~~g~Cv~~CP~g~~~~ 586 (608)
T 1n8y_C 517 QECVEECRVWKGLPREYV-SDKRCLPCHPECQPQNSSETCFGSEADQCAACA--HYK--DSSSCVARCPSGVKPD 586 (608)
T ss_dssp TEEESCCSSSSSSSCEEC-SSSBCEECCTTBCCCSSSCSBSSSSGGGBSSBS--SEE--ETTEEESSCCEEECCT
T ss_pred CcccccCCCCCCcCcccC-CCCcccccchhhcccccCCccCCCCCCCCcccc--ccC--cCCeEcccCCCCcccc
Confidence 579999997 7775 478999999999 499999999999999 344 4799999999999865
No 2
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine kinase, glycoprotein, antigen:antibody complex, FAB fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Probab=99.29 E-value=1.2e-12 Score=90.64 Aligned_cols=59 Identities=39% Similarity=0.987 Sum_probs=51.0
Q ss_pred CcccccCCC-----CeeeCCccccccCccccc------cCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836 2 STCVSRCPP-----RSFPNQGGVCWPCHESCE------TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 2 ~~Cv~~C~~-----g~y~~~~~~C~~C~~~C~------~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
++||++||. ++|.+ .++|.+||++|+ +|+||++++|++|. .++ +.++||..||+|||.+
T Consensus 509 g~Cv~~Cp~~~~~~~~y~~-~~~C~~Ch~~C~~~~~~~tC~Gp~~~~C~sC~--~~~--~~g~Cv~~CP~Gy~~~ 578 (624)
T 1yy9_A 509 RECVDKCKLLEGEPREFVE-NSECIQCHPECLPQAMNITCTGRGPDNCIQCA--HYI--DGPHCVKTCPAGVMGE 578 (624)
T ss_dssp SCEESCCCSSSSSSCEEEE-TTEEEECCTTBCCCSSSCSBSSSSTTSBSSBS--SEE--ETTEEESSCCEEECCG
T ss_pred CEecccCCCccccccccCC-CCcCcCcCHhHhccccCCccCCCCcccccccc--ccC--cCCeecccCCCCcccc
Confidence 689999997 45665 789999999998 99999999999998 344 4799999999999853
No 3
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Probab=99.23 E-value=3.2e-12 Score=86.77 Aligned_cols=58 Identities=31% Similarity=0.804 Sum_probs=50.4
Q ss_pred CcccccCCCCeeeCCccccccCccccc-cCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836 2 STCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
+.|+..||.++|.+....| ||++|. +|.||++++|++|.. ++ +.++||..||.|||.+
T Consensus 189 ~~C~~~C~~~~~~~~~~~C--Ch~~C~~~C~gp~~~~C~~C~~--~~--~~~~Cv~~Cp~g~y~~ 247 (501)
T 1mox_A 189 IICAQQCSGRCRGKSPSDC--CHNQCAAGCTGPRESDCLVCRK--FR--DEATCKDTCPPLMLYN 247 (501)
T ss_dssp SSCCTTCSSCBSSSSTTSB--CCTTEEEEESSSSSTTEEEESS--EE--ETTEEESSCCCSEEEE
T ss_pred CcccCcCCcccccCCCCCe--ECCccCCccCCCCCcccccccc--cC--CCCcccccCCCCeeec
Confidence 3689999999987667889 999998 999999999999995 33 3799999999998764
No 4
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}
Probab=99.17 E-value=1.6e-11 Score=83.09 Aligned_cols=56 Identities=25% Similarity=0.848 Sum_probs=47.3
Q ss_pred cccccCCCCeeeCCccccccCccccc-cCCCCCccc-ccccCCCccccccccccccccccCcccC
Q psy5836 3 TCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDS-CLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~-C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
.|++.|+.++|.+ ...| ||++|. +|.||++++ |++|.. +++ +++||+.||.|||..
T Consensus 191 ~C~~~C~~~~c~~-~~~C--Ch~~C~ggC~GP~~~~~ClsC~~--~~~--~g~Cv~~CP~g~y~~ 248 (486)
T 2hr7_A 191 VCPTICKSHGCTA-EGLC--CHSECLGNCSQPDDPTKCVACRN--FYL--DGRCVETCPPPYYHF 248 (486)
T ss_dssp CCCGGGTTSCBCT-TCCB--CCTTBCSCBSSSSCTTSBSSBSS--EEE--TTEEESSCCTTCEEE
T ss_pred cccccCCCCCCcC-CCCc--cCcccccCCCCCCCCCccccCcc--ccC--CCccccccCCCeEec
Confidence 5788888887764 6788 999996 999999999 999993 443 699999999999863
No 5
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A*
Probab=99.17 E-value=1.5e-11 Score=85.18 Aligned_cols=57 Identities=40% Similarity=1.079 Sum_probs=49.8
Q ss_pred CcccccCCCC-----eeeCCccccccCccccc------cCCCCCcccccccCCCccccccccccccccccCcc
Q psy5836 2 STCVSRCPPR-----SFPNQGGVCWPCHESCE------TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63 (66)
Q Consensus 2 ~~Cv~~C~~g-----~y~~~~~~C~~C~~~C~------~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y 63 (66)
++||++||.+ +|. ..++|.+||++|+ +|.||++++|++|. .|+ +.++||..||+||+
T Consensus 508 g~Cv~~Cp~~~~~~~~y~-~~~~C~~Ch~~C~~~~~~~tC~Gp~~~~C~~C~--~~~--~~~~Cv~~CP~G~~ 575 (621)
T 1m6b_A 508 GVCVTHCNFLNGEPREFA-HEAECFSCHPECQPMEGTATCNGSGSDTCAQCA--HFR--DGPHCVSSCPHGVL 575 (621)
T ss_dssp SCEESCCSSSCSSSCEEE-ETTEEEECCTTBCCCTTSCSBSSSSSTTBSSBS--SEE--ETTEEESSCCSSCC
T ss_pred CeecccCCCCcCCccccc-cCCeeccCCcchhccccccccCCCCcccccccc--ccC--cCCcccccCCCCCc
Confidence 6899999986 455 5899999999999 99999999999998 343 47999999999995
No 6
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A*
Probab=99.16 E-value=1.4e-11 Score=85.23 Aligned_cols=59 Identities=32% Similarity=0.906 Sum_probs=49.5
Q ss_pred CcccccCCCCeee----CCccccccCccccc-------cCCCCCcccccccCCCccccccccccccccccCccc
Q psy5836 2 STCVSRCPPRSFP----NQGGVCWPCHESCE-------TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE 64 (66)
Q Consensus 2 ~~Cv~~C~~g~y~----~~~~~C~~C~~~C~-------~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~ 64 (66)
++||++||.++|. ....+|++||++|+ +|.||++++|++|. .++ ..++||..||+|||.
T Consensus 506 ~~Cv~~Cp~~~~~~~~~~~~~~C~~Ch~~C~~~~~~~~tC~Gp~~~~C~~C~--~~~--~~~~Cv~~CP~G~~~ 575 (617)
T 2ahx_A 506 RICIESCNLYDGEFREFENDSICVECDPQCEKMEDGLLTCHGPGPDNCTKCS--HFK--DGPNCVEKCPDGLQG 575 (617)
T ss_dssp TEEESCCSSSSSSSCEEEETTEEEECCTTBCCCCTTCCSBSSSSTTSBSSBS--SEE--ETTEEESSCCEEEEB
T ss_pred CeeccccCCCcCcccccCCCCchhhcChhhhccccCCCccCCCCCCccccCc--ccc--cCCceeccCCCCccc
Confidence 6799999986432 13789999999998 89999999999999 344 479999999999984
No 7
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor, transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A* 1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Probab=98.96 E-value=4.4e-10 Score=77.74 Aligned_cols=54 Identities=31% Similarity=0.770 Sum_probs=44.5
Q ss_pred cccccCCCCeeeCCccccccCccccc-cCCCCCcccccccCCCccccccccccccccccCcc
Q psy5836 3 TCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63 (66)
Q Consensus 3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y 63 (66)
.|+.+|+. .+.+....| ||++|. +|+||++++|++|+. ++ ++++||..||.+||
T Consensus 198 ~C~~~C~~-c~~~~~~~C--Ch~~C~ggC~gp~~~~C~aC~~--~~--~~g~Cv~~CP~~~~ 252 (608)
T 1n8y_C 198 ICTSGCAR-CKGRLPTDC--CHEQCAAGCTGPKHSDCLACLH--FN--HSGICELHCPALVT 252 (608)
T ss_dssp TCCTTCSC-BSSSSGGGB--CCTTBSSCBSSSSTTSBSSBSS--EE--ETTEEESSCCCSEE
T ss_pred ccCCCCcc-ccCCCCCCc--cChhhCccCCCCCCCccccCcc--cc--cCCchhccCCCccc
Confidence 67888883 343457888 999997 999999999999994 44 36999999999974
No 8
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Probab=98.95 E-value=2.4e-10 Score=78.43 Aligned_cols=58 Identities=28% Similarity=0.696 Sum_probs=48.2
Q ss_pred CcccccCCCCeeeC-CccccccCccccc-cCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836 2 STCVSRCPPRSFPN-QGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 2 ~~Cv~~C~~g~y~~-~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
.+|+++|+.|++.+ ....| ||++|. +|+||++++|++|+. ++ +++.||..||.++|.+
T Consensus 190 ~~C~~~C~~~~c~~~~~~~C--Ch~~C~g~C~gp~~~~C~~C~~--~~--~~~~Cv~~Cp~~~~~n 249 (551)
T 3i2t_A 190 LTCSPQCAGGRCYGPKPREC--CHLFCAGGCTGPTQKDCIACKN--FF--DEGVCKEECPPMRKYN 249 (551)
T ss_dssp SSSCSSSTTCCCSSSSSSCC--CCSSEEEEESSSSSTTEEEESS--EE--ETTEEESSCCCSEEEE
T ss_pred CccCCcCCCCcccCCCCCcc--cCcccCCCCCCCCccccccchh--hc--cCCeeeccCCchhccc
Confidence 36889999877654 35778 999998 999999999999995 44 3699999999998764
No 9
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain, unliganded, autoinhibited, ATP nucleotide-binding, tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A {Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Probab=98.89 E-value=5.9e-10 Score=76.53 Aligned_cols=41 Identities=37% Similarity=0.985 Sum_probs=35.2
Q ss_pred CcccccCC--CCeeeCCccccccCccccccCCCCCcccccccC
Q psy5836 2 STCVSRCP--PRSFPNQGGVCWPCHESCETCAGAGQDSCLTCA 42 (66)
Q Consensus 2 ~~Cv~~C~--~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~ 42 (66)
++||++|| .|+|...+.+|.+||++|++|+||++++|++|+
T Consensus 507 ~~Cv~~C~~~~g~y~~~~~~C~~Ch~~C~tC~G~~~~~C~sC~ 549 (551)
T 3i2t_A 507 GTCIADCGYISNAYKFDNRTCKICHPECRTCNGAGADHCQECV 549 (551)
T ss_dssp TEEESCSCSSSCCCCCSSSCCCCCCSSCSSBCC---CCBSSCC
T ss_pred CCccccCCCCCCcccCCCCcccCCCCcccCCCCcCcCcccccC
Confidence 57999999 688877789999999999999999999999997
No 10
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface receptor, immunity, signaling transferase; HET: NAG NDG; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3p11_A*
Probab=98.87 E-value=1.6e-09 Score=75.01 Aligned_cols=57 Identities=28% Similarity=0.906 Sum_probs=46.9
Q ss_pred cccccCCCCeeeCCccccccCccccc-cCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836 3 TCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
.|+.+|+.+.+.+....| ||++|. +|+||++++|++|+ .++ +++.||..||.|+|.+
T Consensus 190 ~C~~~C~~~c~~~~~~~C--Ch~~C~g~C~gp~~~~C~~C~--~~~--~~~~Cv~~Cp~~~~~~ 247 (621)
T 1m6b_A 190 ICAPQCNGHCFGPNPNQC--CHDECAGGCSGPQDTDCFACR--HFN--DSGACVPRCPQPLVYN 247 (621)
T ss_dssp CCCTTSSSCBSSSSTTCB--CCTTBSSCBSSSSGGGBSSBS--SEE--ETTEEESSCSCSEEEC
T ss_pred cccccCCcccccCCCCCc--cChhhcCCCCCCCcccccccc--ccc--cCCceeccCCCccccc
Confidence 578888777665556788 999997 99999999999999 344 3799999999997653
No 11
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=98.87 E-value=1.1e-09 Score=77.53 Aligned_cols=56 Identities=25% Similarity=0.848 Sum_probs=44.6
Q ss_pred cccccCCCCeeeCCccccccCccccc-cCCCCCccc-ccccCCCccccccccccccccccCcccC
Q psy5836 3 TCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDS-CLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~-C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
.|...|+.+.+.+ .+.| ||++|. +|.||++++ |++|+. +++ +++||..||.++|..
T Consensus 191 ~C~~~C~~~~c~~-~~~C--Ch~~C~ggC~gp~~~~~C~~C~~--~~~--~~~Cv~~Cp~~~y~~ 248 (897)
T 2dtg_E 191 VCPTICKSHGCTA-EGLC--CHSECLGNCSQPDDPTKCVACRN--FYL--DGRCVETCPPPYYHF 248 (897)
T ss_dssp CCCTTTGGGCBCS-SSCB--CCTTCCSEESSSSCGGGEECCSS--CBB--TTBCCSSCCSSCCCC
T ss_pred cccccccCCcccC-CCCc--cChhhCcCCCCCCCCCceeECcc--Ccc--CCcchhhcCCceeEe
Confidence 4556666666654 5788 999996 999999988 999983 443 699999999998853
No 12
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY crystallography, neuregulins, heparin-binding, cell CY signaling protein; HET: NAG NDG; 2.40A {Homo sapiens} PDB: 3u2p_A*
Probab=98.84 E-value=1.3e-09 Score=75.38 Aligned_cols=44 Identities=27% Similarity=0.758 Sum_probs=38.9
Q ss_pred CcccccCCCCeee---------CCccccccCccccc-cCCCCCcccccccCCCc
Q psy5836 2 STCVSRCPPRSFP---------NQGGVCWPCHESCE-TCAGAGQDSCLTCAPAH 45 (66)
Q Consensus 2 ~~Cv~~C~~g~y~---------~~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~ 45 (66)
++||..||.|||. +...+|++||++|. +|.||++++|++|.+++
T Consensus 563 ~~Cv~~CP~G~~~~~~~~~~y~~~~~~C~~Ch~~C~~~C~Gp~~~~C~sC~~~y 616 (617)
T 2ahx_A 563 PNCVEKCPDGLQGANSFIFKYADPDRECHPCHPNCTQGCNGPTSHDCIYYPWTG 616 (617)
T ss_dssp TEEESSCCEEEEBSSSEEEEEECTTSBEEECCTTCTTCBSSSSTTCBCCCTTSC
T ss_pred CceeccCCCCcccccccceeccCCCCcccccCccccccCCCCCCCcCCCCCCCC
Confidence 5799999999873 45789999999998 89999999999998764
No 13
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine kinase, glycoprotein, antigen:antibody complex, FAB fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Probab=98.82 E-value=2.6e-09 Score=74.09 Aligned_cols=56 Identities=32% Similarity=0.838 Sum_probs=45.2
Q ss_pred cccccCCCCeeeCCccccccCccccc-cCCCCCcccccccCCCccccccccccccccccCccc
Q psy5836 3 TCVSRCPPRSFPNQGGVCWPCHESCE-TCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE 64 (66)
Q Consensus 3 ~Cv~~C~~g~y~~~~~~C~~C~~~C~-~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~ 64 (66)
.|+.+|+.+.+.+....| ||++|. +|+||++++|++|+. ++ .+++||..||++||.
T Consensus 190 ~C~~~C~~~c~~~~~~~C--Ch~~C~ggC~gp~~~~C~aC~~--~~--~~g~Cv~~CP~~~~y 246 (624)
T 1yy9_A 190 ICAQQCSGRCRGKSPSDC--CHNQCAAGCTGPRESDCLVCRK--FR--DEATCKDTCPPLMLY 246 (624)
T ss_dssp TSCSSCSSCBSSSSGGGB--CCTTBSSCBSSSSTTCBSSBSS--EE--SSSCEESSCCCSEEE
T ss_pred ccccccCCccccCCCCCc--cChhcccCCCCCCcCccccccc--Cc--cCCcccccCCCcccc
Confidence 577777765554446778 999997 999999999999995 44 379999999999653
No 14
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat, transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo sapiens}
Probab=98.71 E-value=9e-10 Score=74.58 Aligned_cols=60 Identities=23% Similarity=0.523 Sum_probs=43.1
Q ss_pred CcccccCCCCeeeCCccccccCccccccCCCCC-cccccccCCCccccccccccccccccCcccC
Q psy5836 2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAG-QDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~-~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
++||++||.|+|.....+|.. +++|..|.++- ...+++|. ++++ +.+.||..||+|||.+
T Consensus 235 g~Cv~~CP~g~y~~~~~~C~~-~~~C~~c~~~c~~~~~~sC~-~~~~--~~~~CV~~CP~g~~~~ 295 (486)
T 2hr7_A 235 GRCVETCPPPYYHFQDWRCVN-FSFCQDLHHKCKNSRRQGCH-QYVI--HNNKCIPECPSGYTMN 295 (486)
T ss_dssp TEEESSCCTTCEEETTTEEEC-HHHHHHHHHHHHHTCSSSCC-CCEE--ETTEEESSCCTTEEEC
T ss_pred CccccccCCCeEecCCCEEec-CcccccCCCcccCCCCcccc-cEee--ECCEecccCCCCcccC
Confidence 689999999999865677776 56665543321 12357886 4443 4799999999999986
No 15
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex, transferase-growth F complex; HET: NAG FUC BMA MAN; 2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
Probab=98.60 E-value=1.5e-08 Score=68.81 Aligned_cols=60 Identities=23% Similarity=0.508 Sum_probs=44.9
Q ss_pred CcccccCCCCeeeCCccccccCccccccCCCCCccccc-ccCCCccccccccccccccccCcccC
Q psy5836 2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCL-TCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~-~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
++||.+||.|+|.+....+..+++.+...++ ..|+ +|+.++++ ...++||..||+|||.+
T Consensus 234 ~~Cv~~Cp~g~y~~~~~~~~~~~p~~~~~~~---~~Cv~~Cp~~~~l-~~~g~Cv~~Cp~G~y~~ 294 (501)
T 1mox_A 234 ATCKDTCPPLMLYNPTTYQMDVNPEGKYSFG---ATCVKKCPRNYVV-TDHGSCVRACGADSYEM 294 (501)
T ss_dssp TEEESSCCCSEEEETTTTEEEECTTCCEEET---TEEESSCCTTCEE-CTTSBEESSCCSSCCCB
T ss_pred CcccccCCCCeeecCCceEEecCCCccccch---hhhhcccCcccEe-ccCCEEeccCCCCCeec
Confidence 6799999999998876666666666554332 4675 78777665 24799999999999963
No 16
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Probab=98.59 E-value=1.8e-08 Score=68.20 Aligned_cols=54 Identities=30% Similarity=0.938 Sum_probs=41.1
Q ss_pred ccccCCCCeeeCCccccccCcccc-ccCCCCCccc-ccccCCCccccccccccccccccCccc
Q psy5836 4 CVSRCPPRSFPNQGGVCWPCHESC-ETCAGAGQDS-CLTCAPAHLRVTDLAICLQQCPEGYFE 64 (66)
Q Consensus 4 Cv~~C~~g~y~~~~~~C~~C~~~C-~~C~g~~~~~-C~~C~~~~~~~~~~~~Cv~~Cp~g~y~ 64 (66)
|+++|..+.+. ....| ||+.| .+|+||++++ |++|+ .+. +++.||+.||+++|.
T Consensus 185 C~~~C~~~~c~-~~~~C--Ch~~C~ggC~gp~~~~~C~aC~--~~~--~~g~Cv~~CP~~~y~ 240 (478)
T 1igr_A 185 CPSTCGKRACT-ENNEC--CHPECLGSCSAPDNDTACVACR--HYY--YAGVCVPACPPNTYR 240 (478)
T ss_dssp CCGGGTTSCBC-TTSCB--CCTTEEEEESSTTCTTSEEEES--SEE--CSSSEESSCCTTCEE
T ss_pred ccccCCCcccc-CCCcc--cccccCcCCCCCCCCcceeeee--eec--cCCcCcccCCCceeE
Confidence 45555543333 35778 99999 6999999887 99999 443 479999999999874
No 17
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone receptor/immune system complex; 3.80A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1 PDB: 3loh_E
Probab=98.40 E-value=6.7e-08 Score=68.50 Aligned_cols=55 Identities=27% Similarity=0.660 Sum_probs=41.2
Q ss_pred CcccccCCCCeeeCC------ccccccCccccccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836 2 STCVSRCPPRSFPNQ------GGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 2 ~~Cv~~C~~g~y~~~------~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
++||++||.|+|... ...|+.||+.|.+|.+ ++|. .+.. +.+.||..||.||+.+
T Consensus 235 ~~Cv~~Cp~~~y~~~~~~C~~~~~C~~~~~~c~~~~~------~~c~-~~~~--~~~~Cv~~CP~g~~~~ 295 (897)
T 2dtg_E 235 GRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRR------QGCH-QYVI--HNNKCIPECPSGYTMN 295 (897)
T ss_dssp TBCCSSCCSSCCCCTTSBCCCHHHHHHHSSCCCSTTT------TSCC-CCEE--ETTEEESSCCSSCEEC
T ss_pred CcchhhcCCceeEecCcEEcChhHhhccCccccCCCc------cccc-ceee--ECCEEccCCCCCcccc
Confidence 689999999999753 3457777888777655 4563 3333 4799999999999875
No 18
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Probab=97.38 E-value=6.6e-05 Score=50.89 Aligned_cols=57 Identities=25% Similarity=0.616 Sum_probs=37.3
Q ss_pred CcccccCCCCeeeCCccccccCccccccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836 2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 2 ~~Cv~~C~~g~y~~~~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
++||++||.++|...+.+|..- ..|.....+ +.+|...+.. ..+.||..||+||+.+
T Consensus 228 g~Cv~~CP~~~y~~~~~rCvt~-~~C~~~~~~----~~~~~~~~~~--~~~~Cv~~CP~g~~~~ 284 (478)
T 1igr_A 228 GVCVPACPPNTYRFEGWRCVDR-DFCANILSA----ESSDSEGFVI--HDGECMQECPSGFIRN 284 (478)
T ss_dssp SSEESSCCTTCEEETTTEEECH-HHHHTSSTT----SCCCSCCCEE--ETTEEESSCCTTEEES
T ss_pred CcCcccCCCceeEecCcceecH-HHHhhcCCc----ccccccceee--ECCeecccCCCCCccc
Confidence 5799999999987545555432 244443332 3345544443 4799999999998764
No 19
>3p0y_A Epidermal growth factor receptor; beta-sandwich, antigens EGFR, immune system; HET: NAG FUL; 1.80A {Homo sapiens} PDB: 3b2u_A* 3c09_A*
Probab=97.29 E-value=8.6e-05 Score=45.84 Aligned_cols=36 Identities=25% Similarity=0.749 Sum_probs=22.5
Q ss_pred ccc----ccCccccc--cCCCCCcccccccCCCccccccccccccc
Q psy5836 18 GVC----WPCHESCE--TCAGAGQDSCLTCAPAHLRVTDLAICLQQ 57 (66)
Q Consensus 18 ~~C----~~C~~~C~--~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~ 57 (66)
..| ..||++|. .|.||++++|.+|+ .|.+ ++.||+.
T Consensus 164 ~~C~~~~~~C~~~C~~~gCWGpgp~~C~~C~--~~~~--~~~cv~~ 205 (214)
T 3p0y_A 164 NSCKATGQVCHALCSPEGCWGPEPRDCVSCR--NVSR--GRECVDK 205 (214)
T ss_dssp HHHHHTTCSCCTTBCTTCBSSSSGGGBSSBC---------------
T ss_pred cccccCCCCCCccCCCCCccCcCcccccccc--CEee--CCeeecC
Confidence 467 68999994 79999999999999 4543 5889863
No 20
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=96.47 E-value=0.0027 Score=36.57 Aligned_cols=34 Identities=24% Similarity=0.628 Sum_probs=18.8
Q ss_pred CCCCCcccccccCCCccccc---cccccccccccCcccC
Q psy5836 30 CAGAGQDSCLTCAPAHLRVT---DLAICLQQCPEGYFES 65 (66)
Q Consensus 30 C~g~~~~~C~~C~~~~~~~~---~~~~Cv~~Cp~g~y~~ 65 (66)
|+......|. |.+|+|... .+..|. .||.|+|.+
T Consensus 75 Ct~t~dt~C~-C~~G~y~~~g~~~~~~C~-~C~~Gtfs~ 111 (146)
T 2hey_R 75 CTATQDTVCR-CRAGTQPLDSYKPGVDCA-PCPPGHFSP 111 (146)
T ss_dssp CBTTBCCEEE-ECTTEEESCSSSTTSSEE-ECCTTEECC
T ss_pred CccCCCcccc-CCCCeeeCCCcccCcccc-cCCCCcccC
Confidence 4343445563 777766532 123565 588887765
No 21
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=96.28 E-value=0.0035 Score=36.73 Aligned_cols=39 Identities=26% Similarity=0.704 Sum_probs=20.7
Q ss_pred cCCCCeeeCC---ccccccCccccc---------cCCCCCcccccccCCCccc
Q psy5836 7 RCPPRSFPNQ---GGVCWPCHESCE---------TCAGAGQDSCLTCAPAHLR 47 (66)
Q Consensus 7 ~C~~g~y~~~---~~~C~~C~~~C~---------~C~g~~~~~C~~C~~~~~~ 47 (66)
.||.|+|.+. ...|++|. .|. .|+......| .|.+|+|.
T Consensus 44 ~C~~gty~~~~n~~~~C~~C~-~C~~~~~~~~~~~Ct~t~dt~C-~C~~G~y~ 94 (162)
T 1ext_A 44 ECESGSFTASENHLRHCLSCS-KCRKEMGQVEISSCTVDRDTVC-GCRKNQYR 94 (162)
T ss_dssp ECCTTEECCSSBCCSSCEECC-CCCGGGTCEEEECCBTTBCCEE-ECCTTEEE
T ss_pred cCCCCccccccCCCCcccccC-CCCCCCCEEEEecccCCCCCCc-cCCCCcee
Confidence 5667776653 22355543 331 4544445566 67766664
No 22
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=96.27 E-value=0.0037 Score=36.90 Aligned_cols=56 Identities=21% Similarity=0.658 Sum_probs=34.1
Q ss_pred cCCCCeeeCC---ccccccCccccc-------cCCCCCcccccccCCCccccccc----cccc--cccccCcc
Q psy5836 7 RCPPRSFPNQ---GGVCWPCHESCE-------TCAGAGQDSCLTCAPAHLRVTDL----AICL--QQCPEGYF 63 (66)
Q Consensus 7 ~C~~g~y~~~---~~~C~~C~~~C~-------~C~g~~~~~C~~C~~~~~~~~~~----~~Cv--~~Cp~g~y 63 (66)
.||.|+|.+. ...|.+|...|. .|.......| .|.+|+|..... ..|+ ..||.|++
T Consensus 45 ~C~~gty~~~~n~~~~C~~C~~~C~~g~~~~~~Ct~t~d~~C-~C~~G~y~~~~~~~~c~~C~~~~~C~~G~~ 116 (173)
T 3alq_R 45 SCEDSTYTQLWNWVPECLSCGSRCSSDQVETQACTREQNRIC-TCRPGWYCALSKQEGCRLCAPLRKCRPGFG 116 (173)
T ss_dssp ECCTTEECCSSBCCSSCEECCCCCCTTEEEEECCCSSSCCEE-EECTTEEEEEECSSSEEEEEECCCBCTTEE
T ss_pred cCCCCccccCCCCCCccCCCCCcCCCCCEEecCCCCCCCCee-ECCCCeEeccCCCCCCCcccccCcCCCCee
Confidence 5778887754 235777765452 3555556678 488888764321 2565 46676665
No 23
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=96.09 E-value=0.0076 Score=34.24 Aligned_cols=34 Identities=26% Similarity=0.754 Sum_probs=12.7
Q ss_pred cCCCCCcccccccCCCcccccc-cccccc---ccccCcc
Q psy5836 29 TCAGAGQDSCLTCAPAHLRVTD-LAICLQ---QCPEGYF 63 (66)
Q Consensus 29 ~C~g~~~~~C~~C~~~~~~~~~-~~~Cv~---~Cp~g~y 63 (66)
.|+......|. |..|+|.... ...|+. .||.|++
T Consensus 75 ~Ct~t~dtvC~-C~~G~y~~~~~~~~C~~C~t~C~~G~~ 112 (130)
T 1du3_A 75 PCTTTRNTVCQ-CEEGTFREEDSPEMCRKCRTGCPRGMV 112 (130)
T ss_dssp CCCSSSCCEEE-ECTTCEEETTEEEEEEC----------
T ss_pred cCCCCCCCEec-CCCCeEECCCCCCcCcCCcCcCCcCCE
Confidence 34444455565 6666654321 234444 3665554
No 24
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=95.98 E-value=0.0056 Score=36.50 Aligned_cols=41 Identities=24% Similarity=0.709 Sum_probs=25.8
Q ss_pred cCCCCeeeCC---ccccccCccccc-------cCCCCCcccccccCCCcccc
Q psy5836 7 RCPPRSFPNQ---GGVCWPCHESCE-------TCAGAGQDSCLTCAPAHLRV 48 (66)
Q Consensus 7 ~C~~g~y~~~---~~~C~~C~~~C~-------~C~g~~~~~C~~C~~~~~~~ 48 (66)
.|++|+|.+. ...|++|...|. .|+......| .|.+|+|..
T Consensus 45 pC~~gtY~~~~n~~~~C~~C~~~C~~~~~~~~~Ct~tsdtvC-~C~~G~~~~ 95 (176)
T 3k51_B 45 PCPPRHYTQFWNYLERCRYCNVLCGEREEEARACHATHNRAC-RCRTGFFAH 95 (176)
T ss_dssp ECCTTEECCSCBCCSSCEECCCCCCSSEEEEECCBTTBCCEE-EECTTEEEE
T ss_pred cCCCCCeecCCCCCCcCccccCcCCCCCEEeccCcCCCCcee-eccCCeeEC
Confidence 5677777543 346777765553 3566566677 688877764
No 25
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=95.72 E-value=0.0088 Score=34.75 Aligned_cols=55 Identities=25% Similarity=0.594 Sum_probs=28.0
Q ss_pred cCCCC-eeeCC---ccccccCcccc-------ccCCCCCcccccccCCCccccccccccc--cccccCcc
Q psy5836 7 RCPPR-SFPNQ---GGVCWPCHESC-------ETCAGAGQDSCLTCAPAHLRVTDLAICL--QQCPEGYF 63 (66)
Q Consensus 7 ~C~~g-~y~~~---~~~C~~C~~~C-------~~C~g~~~~~C~~C~~~~~~~~~~~~Cv--~~Cp~g~y 63 (66)
.|+.| +|.+. ...|++|. .| ..|+......|. |.+++|.......|+ ..||.|++
T Consensus 38 ~C~~g~ty~~~~~~~~~C~~C~-~C~~~~~~~~~Ct~t~d~~C~-C~~G~y~~~~~~~C~~C~~C~~G~~ 105 (161)
T 1sg1_X 38 PCLDNVTFSDVVSATEPCKPCT-ECLGLQSMSAPCVEADDAVCR-CAYGYYQDEETGHCEACSVCEVGSG 105 (161)
T ss_dssp ECCTTTEECCSCBSSCCCEECC-CCCTTEEEEECCBTTBCCEEE-ECTTEEECTTTCCEEECCCBCTTEE
T ss_pred CCcCCCccccCCCCCCcCcCCC-CCCCcceeecCCCcccCceec-cCCCeEeCCCCccccCCccCCCCCe
Confidence 56666 66543 23565553 22 234444455664 777766633334452 24555554
No 26
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo sapiens} PDB: 4e4d_R
Probab=95.53 E-value=0.011 Score=35.06 Aligned_cols=41 Identities=20% Similarity=0.631 Sum_probs=25.3
Q ss_pred cCCCCeeeCC---ccccccCccccc-------cCCCCCcccccccCCCcccc
Q psy5836 7 RCPPRSFPNQ---GGVCWPCHESCE-------TCAGAGQDSCLTCAPAHLRV 48 (66)
Q Consensus 7 ~C~~g~y~~~---~~~C~~C~~~C~-------~C~g~~~~~C~~C~~~~~~~ 48 (66)
.||+|+|.+. ...|++|.+.|. .|+......|. |.+|+|..
T Consensus 43 ~C~~gty~~~~n~~~~C~~C~~~C~~~~~~~~~CT~tsdtvC~-C~~G~~~~ 93 (171)
T 3urf_Z 43 PCPDHYYTDSWHTSDECLYCSPVCKELQYVKQECNRTHNRVCE-CKEGRYLE 93 (171)
T ss_dssp ECCTTEECCSCBCCSSCEECCCCCCTTEEEEECCCSSSCCEEE-ECTTEEEE
T ss_pred cCCCCcEecCCCCCCccccCcCccCCCCEEeccCcCCCCcccc-CCCCcEEC
Confidence 5677777654 356777765553 35555556675 77777653
No 27
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=95.48 E-value=0.0093 Score=34.15 Aligned_cols=56 Identities=23% Similarity=0.654 Sum_probs=27.8
Q ss_pred cCCCCeeeCC---ccccccCcccc---------ccCCCCCcccccccCCCccccccc-c---cccc--ccccCccc
Q psy5836 7 RCPPRSFPNQ---GGVCWPCHESC---------ETCAGAGQDSCLTCAPAHLRVTDL-A---ICLQ--QCPEGYFE 64 (66)
Q Consensus 7 ~C~~g~y~~~---~~~C~~C~~~C---------~~C~g~~~~~C~~C~~~~~~~~~~-~---~Cv~--~Cp~g~y~ 64 (66)
.||.|+|.+. ...|++|.. | ..|+......|. |.+|+|..... . .|+. .||.|+..
T Consensus 41 pC~~gtys~~~n~~~~C~~C~~-C~~~~g~~~~~~CT~t~dtvC~-C~~G~~c~~~~~~~C~~C~~~s~C~pG~~v 114 (134)
T 4fhq_A 41 PCPPGTYIAHLNGLSKCLQCQM-CDPAMGLRASRNCSRTENAVCG-CSPGHFCIVQDGDHCAACRAYATSSPGQRV 114 (134)
T ss_dssp ECCTTEECCSCBCCSSCEECCC-CCGGGTEEEEECCCSSSCCEEE-ECTTEEEEEEETTEEEEEEEC---------
T ss_pred CCCCCCEecCCCCCCcCcCCCC-CCccCCeEEeccCCCCCCcccc-CCCCCEecCCCCCCCcCCCCCCcCcCCCeE
Confidence 5677777643 245555543 3 245555667786 88888875321 2 4665 78888754
No 28
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=95.32 E-value=0.015 Score=33.40 Aligned_cols=56 Identities=23% Similarity=0.683 Sum_probs=33.4
Q ss_pred cCCCCeeeCC---ccccccCcccc-------ccCCCCCcccccccCCCccccc--ccc---ccc--cccccCcc
Q psy5836 7 RCPPRSFPNQ---GGVCWPCHESC-------ETCAGAGQDSCLTCAPAHLRVT--DLA---ICL--QQCPEGYF 63 (66)
Q Consensus 7 ~C~~g~y~~~---~~~C~~C~~~C-------~~C~g~~~~~C~~C~~~~~~~~--~~~---~Cv--~~Cp~g~y 63 (66)
.||.|+|.+. ...|.+|..-. ..|+......| .|.+|+|... ..+ .|+ ..||.|++
T Consensus 40 pC~~gty~~~~n~~~~C~~C~~C~~~~~~~~~~Ct~t~dtvC-~C~~G~yc~~~~~~~~C~~C~~~t~C~pG~~ 112 (142)
T 2uwi_A 40 HCPSDTFTSIYNRSPWCHSCRGPCGTNRVEVTPCTPTTNRIC-HCDSNSYCLLKASDGNCVTCAPKTKCGRGYG 112 (142)
T ss_dssp ECCTTEECCSSBCCSSCEECCCCCCTTEEEEECCBTTBCCEE-EECTTEEEEEECTTSCEEEEEECCCCCTTEE
T ss_pred cCCCCCCcccCCCCCccCCCcCcccCCeeEeecCCCCCCCEe-eCCCCcEecccCCCCCCCCCcCCCcCCcCEe
Confidence 5777777654 23466654322 24666566788 5898888532 123 454 46888876
No 29
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=95.18 E-value=0.017 Score=37.46 Aligned_cols=41 Identities=29% Similarity=0.826 Sum_probs=22.3
Q ss_pred cCCCCeeeCC---ccccccCccccc-------cCCCCCcccccccCCCcccc
Q psy5836 7 RCPPRSFPNQ---GGVCWPCHESCE-------TCAGAGQDSCLTCAPAHLRV 48 (66)
Q Consensus 7 ~C~~g~y~~~---~~~C~~C~~~C~-------~C~g~~~~~C~~C~~~~~~~ 48 (66)
.|+.|+|.+. ...|..|...|. .|+......| .|..|+|..
T Consensus 49 pCp~GtYt~~~N~~~~C~~C~~~C~~g~~~~~~CT~TsDtvC-~C~~G~y~~ 99 (313)
T 3u3p_A 49 SCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDREC-TCPPGMFQS 99 (313)
T ss_dssp ECCTTEECCSCBCCSSCEECCCCCCTTCEEEECSBTTBCCEE-ECCTTEEEE
T ss_pred cCCCCceeccCCCCCcCcccccccCCCCEEecCCcCCCCccc-cCCCCceec
Confidence 4566666543 245666554342 3444445567 677777653
No 30
>1du3_A Death receptor 5; trail, DR5, complex; 2.20A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1d0g_R 2h9g_R 1za3_R 1d4v_A
Probab=95.11 E-value=0.016 Score=32.85 Aligned_cols=60 Identities=22% Similarity=0.508 Sum_probs=36.6
Q ss_pred ccccCCCCeeeCC-ccccccCccc-cccCCCCCcccc---cccCCCccccc-----cccccccccccCcccC
Q psy5836 4 CVSRCPPRSFPNQ-GGVCWPCHES-CETCAGAGQDSC---LTCAPAHLRVT-----DLAICLQQCPEGYFES 65 (66)
Q Consensus 4 Cv~~C~~g~y~~~-~~~C~~C~~~-C~~C~g~~~~~C---~~C~~~~~~~~-----~~~~Cv~~Cp~g~y~~ 65 (66)
|=..||.|+|... ...|.+|.+. =.+=.......| ..|..+++... .+..|. |++|||.+
T Consensus 24 ~C~~CppG~~~~~~~t~C~pC~~g~ty~~~~n~~~~C~~C~~C~~g~~~~~~Ct~t~dtvC~--C~~G~y~~ 93 (130)
T 1du3_A 24 SEGLCPPGHHISEDGRDCISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQ--CEEGTFRE 93 (130)
T ss_dssp BTTBBCTTEEECSSSSCEEECCTTTEECCSSBCCSSCEECCCCCTTEEEEECCCSSSCCEEE--ECTTCEEE
T ss_pred ccCCCCCCceecCCCCcCccCCCcCEEeCCCCCCCcCcCCCCCCcceeeeccCCCCCCCEec--CCCCeEEC
Confidence 4458999999865 5677777665 211111122334 46677655432 356787 99999964
No 31
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=95.08 E-value=0.027 Score=33.00 Aligned_cols=34 Identities=21% Similarity=0.537 Sum_probs=14.1
Q ss_pred CCCCCcccccccCCCcccccc-ccccc-----cccccCccc
Q psy5836 30 CAGAGQDSCLTCAPAHLRVTD-LAICL-----QQCPEGYFE 64 (66)
Q Consensus 30 C~g~~~~~C~~C~~~~~~~~~-~~~Cv-----~~Cp~g~y~ 64 (66)
|...+...| .|.+|+|.... ...|. ..||.|++.
T Consensus 73 Ct~t~~t~C-~C~~G~y~~~~~~~~C~~C~~~t~C~~G~~~ 112 (167)
T 1jma_B 73 CSRTENAVC-GCSPGHFCIVQDGDHCAACRAYATSSPGQRV 112 (167)
T ss_dssp CCSSSCCEE-EECTTEEEEECC--CCSEEEECCC-------
T ss_pred CCCCCCCcc-cCCCCceecCCCCCcCccccCcccCCCCCEE
Confidence 455555677 77777776432 12333 257777664
No 32
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=95.07 E-value=0.022 Score=34.96 Aligned_cols=32 Identities=19% Similarity=0.517 Sum_probs=15.1
Q ss_pred CCCCCcccccccCCCccccccccccc--cccccCc
Q psy5836 30 CAGAGQDSCLTCAPAHLRVTDLAICL--QQCPEGY 62 (66)
Q Consensus 30 C~g~~~~~C~~C~~~~~~~~~~~~Cv--~~Cp~g~ 62 (66)
|+......|. |.+|+|....-..|+ ..||.|+
T Consensus 103 Ct~t~dtvC~-C~~G~y~~~~c~~C~~cs~C~pG~ 136 (216)
T 3me4_A 103 GNHTAPRRCA-CTAGYHWNSDCECCRRNTECAPGF 136 (216)
T ss_dssp TCSSSCCEEE-ECTTEEEETTTTEEEECCCBCTTE
T ss_pred CCCCCCcccc-CCCCeEccCCCcchhccccCCCCc
Confidence 4444445554 666666532223343 2444444
No 33
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=93.95 E-value=0.047 Score=31.98 Aligned_cols=58 Identities=31% Similarity=0.652 Sum_probs=28.1
Q ss_pred cccCCCCeeeC------CccccccCccccccCCCCCccccccc---CC--Ccccc-----ccccccccccccCccc
Q psy5836 5 VSRCPPRSFPN------QGGVCWPCHESCETCAGAGQDSCLTC---AP--AHLRV-----TDLAICLQQCPEGYFE 64 (66)
Q Consensus 5 v~~C~~g~y~~------~~~~C~~C~~~C~~C~g~~~~~C~~C---~~--~~~~~-----~~~~~Cv~~Cp~g~y~ 64 (66)
-..||.|+|.. ....|.+|.+.-.+=...+...|+.| .. +++.. ..+..| .|+.|||.
T Consensus 16 C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~~~~C~~C~~C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y~ 89 (167)
T 1jma_B 16 CPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNGLSKCLQCQMCDPAMGLRASRNCSRTENAVC--GCSPGHFC 89 (167)
T ss_dssp CBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBCSSCCEECCCCCTTTTEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCEeccCCCCCCCCcCCcCCCCccccccCcCccccCCcccccCCCeEEeccCCCCCCCcc--cCCCCcee
Confidence 34677777652 24566666554211111112345444 33 33221 124567 68888875
No 34
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=93.91 E-value=0.04 Score=32.38 Aligned_cols=13 Identities=15% Similarity=0.537 Sum_probs=5.8
Q ss_pred CcccccccCCCcc
Q psy5836 34 GQDSCLTCAPAHL 46 (66)
Q Consensus 34 ~~~~C~~C~~~~~ 46 (66)
+...|..|..+.|
T Consensus 39 ~~t~C~~C~~gty 51 (173)
T 3alq_R 39 SDTVCDSCEDSTY 51 (173)
T ss_dssp CCCEEEECCTTEE
T ss_pred CCCcCCcCCCCcc
Confidence 3344444444443
No 35
>1sg1_X Tumor necrosis factor receptor superfamily member 16; nerve growth factor, NGF, neurotrophin, common neurotrophin receptor; 2.40A {Rattus norvegicus} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 g.24.1.1 PDB: 3buk_C* 3ij2_X
Probab=93.51 E-value=0.066 Score=30.95 Aligned_cols=13 Identities=38% Similarity=1.065 Sum_probs=8.1
Q ss_pred ccccccccccCcccC
Q psy5836 51 LAICLQQCPEGYFES 65 (66)
Q Consensus 51 ~~~Cv~~Cp~g~y~~ 65 (66)
+.+|. |++|+|.+
T Consensus 76 d~~C~--C~~G~y~~ 88 (161)
T 1sg1_X 76 DAVCR--CAYGYYQD 88 (161)
T ss_dssp CCEEE--ECTTEEEC
T ss_pred Cceec--cCCCeEeC
Confidence 34563 77887763
No 36
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=93.50 E-value=0.034 Score=37.31 Aligned_cols=48 Identities=33% Similarity=0.877 Sum_probs=27.7
Q ss_pred CcccccCCCCeeeCC--ccccccCccccccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836 2 STCVSRCPPRSFPNQ--GGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 2 ~~Cv~~C~~g~y~~~--~~~C~~C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
..|...|++||.... +..| |+ +|+.|..+.+. .+...|+ .||++++++
T Consensus 483 S~CS~~C~pG~rk~~~~g~~C---------C~-----~C~~C~~~~~~-td~~~C~-~Cp~~~wpn 532 (555)
T 2e4u_A 483 SQCSDPCAPNEMKNMQPGDVC---------CW-----ICIPCEPYEYL-VDEFTCM-DCGPGQWPT 532 (555)
T ss_dssp CCSSCCCCTTTEEEECCSSSS---------CC-----EEEECCTTEEE-EETTEEE-ECCTTEEEC
T ss_pred eeeCCCCCCCeeeeecCCCee---------EE-----ECccCCCceec-CCCccce-eCCcccCcC
Confidence 579999999987632 2233 22 45555554443 3455665 466666554
No 37
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=91.11 E-value=0.088 Score=25.13 Aligned_cols=26 Identities=19% Similarity=0.655 Sum_probs=19.4
Q ss_pred ccCCCCeeeCC-ccccccCccccccCC
Q psy5836 6 SRCPPRSFPNQ-GGVCWPCHESCETCA 31 (66)
Q Consensus 6 ~~C~~g~y~~~-~~~C~~C~~~C~~C~ 31 (66)
..||...|.|. ...|.+|+..|.+-.
T Consensus 2 ~~C~~eqYwD~LL~~C~pC~l~Cs~~~ 28 (47)
T 1xu2_R 2 GQCSQNEYFDSLLHACIPCQLRCSSNT 28 (47)
T ss_dssp --CCTTEEEETTTTEEEEGGGTTTSSS
T ss_pred CCCcHHHHHHHHHhcccchhcccCCCC
Confidence 57898888877 689999999876433
No 38
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Probab=90.77 E-value=0.2 Score=29.02 Aligned_cols=53 Identities=26% Similarity=0.639 Sum_probs=29.3
Q ss_pred cCCCCeeeCCc------cccccCc--cc--c---ccCCCCCcccccccCCCccccccccccccccccCcccC
Q psy5836 7 RCPPRSFPNQG------GVCWPCH--ES--C---ETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 7 ~C~~g~y~~~~------~~C~~C~--~~--C---~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
.|++|||.+.. ..|++|. .. . .+|.. ....|+.|+.++. ...|- .|++|||.+
T Consensus 34 ~C~~g~~g~~~~~~~~~~~C~~C~C~~~~~~~~~~~C~~-~tG~C~~C~~g~~----G~~Ce-~C~~Gy~g~ 99 (162)
T 1klo_A 34 LCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNR-LTGECLKCIYNTA----GFYCD-RCKEGFFGN 99 (162)
T ss_dssp EECTTEEEETTCTTSSCEEEEECCSTTCBCTTCSCCBCT-TTCCBCCBCTTEE----TTTTC-EECTTEEEC
T ss_pred CCCCCCcCCcccccCCCCCCeeCcCCCCCCcccCCcccC-CCCcccCCCCCCc----CCCcC-cCchhhcCC
Confidence 57788886431 3676653 11 0 12321 2346777776643 34554 488888864
No 39
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=90.20 E-value=0.17 Score=32.84 Aligned_cols=61 Identities=25% Similarity=0.551 Sum_probs=35.2
Q ss_pred cccccCCCCeeeCC------ccccccCccccccCCCCCcccccccC----CCccccc-----cccccccccccCcccC
Q psy5836 3 TCVSRCPPRSFPNQ------GGVCWPCHESCETCAGAGQDSCLTCA----PAHLRVT-----DLAICLQQCPEGYFES 65 (66)
Q Consensus 3 ~Cv~~C~~g~y~~~------~~~C~~C~~~C~~C~g~~~~~C~~C~----~~~~~~~-----~~~~Cv~~Cp~g~y~~ 65 (66)
.|-..||.|+|... ..+|.+|.+.=.+=...+...|+.|. .+.+... .+-+| .|+.|||.+
T Consensus 24 ~CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N~~~~C~~C~~~C~~g~~~~~~CT~TsDtvC--~C~~G~y~~ 99 (313)
T 3u3p_A 24 LTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDREC--TCPPGMFQS 99 (313)
T ss_dssp EEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCBCCSSCEECCCCCCTTCEEEECSBTTBCCEE--ECCTTEEEE
T ss_pred CCCCCCCCCceecCcCCCCCCCccccCCCCceeccCCCCCcCcccccccCCCCEEecCCcCCCCccc--cCCCCceec
Confidence 35578999999642 46788886653221111235666654 4544321 24567 588888853
No 40
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=89.49 E-value=0.28 Score=28.65 Aligned_cols=25 Identities=32% Similarity=0.772 Sum_probs=15.1
Q ss_pred CcccccCCCCeeeCC-------ccccccCccc
Q psy5836 2 STCVSRCPPRSFPNQ-------GGVCWPCHES 26 (66)
Q Consensus 2 ~~Cv~~C~~g~y~~~-------~~~C~~C~~~ 26 (66)
+.|-..||.|+|... ..+|.+|.+.
T Consensus 41 ~~CC~~CppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPCPPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCBCTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCCCCCCeECCcCCCCCCCCcceeCCCC
Confidence 345567888877631 2466666554
No 41
>1ext_A Tumor necrosis factor receptor; binding protein, cytokine, signalling protein; 1.85A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 1ft4_A* 1ncf_A 1tnr_R
Probab=88.44 E-value=0.39 Score=27.81 Aligned_cols=8 Identities=13% Similarity=0.625 Sum_probs=5.1
Q ss_pred ccccCccc
Q psy5836 57 QCPEGYFE 64 (66)
Q Consensus 57 ~Cp~g~y~ 64 (66)
.|++|||.
T Consensus 87 ~C~~G~y~ 94 (162)
T 1ext_A 87 GCRKNQYR 94 (162)
T ss_dssp ECCTTEEE
T ss_pred cCCCCcee
Confidence 46777664
No 42
>1ccv_A AMCI, chymotrypsin inhibitor; protein inhibitor, hemolymph, canonical inhibitor, hydrolase inhibitor; NMR {Apis mellifera} SCOP: g.22.1.1
Probab=88.37 E-value=0.59 Score=22.43 Aligned_cols=15 Identities=27% Similarity=0.587 Sum_probs=8.7
Q ss_pred cCCCcccccccccccc
Q psy5836 41 CAPAHLRVTDLAICLQ 56 (66)
Q Consensus 41 C~~~~~~~~~~~~Cv~ 56 (66)
|..|++|. +++.||.
T Consensus 38 C~~G~v~~-~~g~CV~ 52 (56)
T 1ccv_A 38 CQEGFLRN-GEGACVL 52 (56)
T ss_dssp ECTTCEEE-TTTEEEC
T ss_pred CCCCeeEC-CCCcccC
Confidence 66666654 2366764
No 43
>4fhq_A Tumor necrosis factor receptor superfamily member; cysteine rich domain, TNF receptor, structural genomics, PSI protein structure initiative; 2.25A {Homo sapiens} PDB: 2aw2_B*
Probab=86.63 E-value=0.39 Score=27.26 Aligned_cols=11 Identities=45% Similarity=0.981 Sum_probs=7.0
Q ss_pred cccccccccCccc
Q psy5836 52 AICLQQCPEGYFE 64 (66)
Q Consensus 52 ~~Cv~~Cp~g~y~ 64 (66)
.+|. |.+|||.
T Consensus 81 tvC~--C~~G~~c 91 (134)
T 4fhq_A 81 AVCG--CSPGHFC 91 (134)
T ss_dssp CEEE--ECTTEEE
T ss_pred cccc--CCCCCEe
Confidence 4454 7788774
No 44
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=86.23 E-value=0.37 Score=27.39 Aligned_cols=23 Identities=35% Similarity=0.767 Sum_probs=12.6
Q ss_pred ccccCCCCeeeC------CccccccCccc
Q psy5836 4 CVSRCPPRSFPN------QGGVCWPCHES 26 (66)
Q Consensus 4 Cv~~C~~g~y~~------~~~~C~~C~~~ 26 (66)
|-..||.|+|.. ...+|.+|.+.
T Consensus 18 CC~~C~pG~~~~~~Ct~~~~t~C~~C~~g 46 (146)
T 2hey_R 18 CCHECRPGNGMVSRCSRSQNTVCRPCGPG 46 (146)
T ss_dssp EEECBCTTEEEEECCCSSCCCEEEECCTT
T ss_pred CCCCCCCCCeecccCCCCCCCCcccCCCC
Confidence 334667776642 24566666554
No 45
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member; immune regulator, cytokine-cytokine receptor compl; HET: NAG; 3.50A {Homo sapiens}
Probab=86.14 E-value=0.98 Score=26.49 Aligned_cols=7 Identities=43% Similarity=1.056 Sum_probs=4.8
Q ss_pred cccCccc
Q psy5836 58 CPEGYFE 64 (66)
Q Consensus 58 Cp~g~y~ 64 (66)
|+.|||.
T Consensus 85 C~~G~~~ 91 (177)
T 3qd6_R 85 CEEGWHC 91 (177)
T ss_dssp ECTTEEE
T ss_pred cCCCcEE
Confidence 7777764
No 46
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Probab=85.13 E-value=0.68 Score=30.73 Aligned_cols=9 Identities=22% Similarity=0.693 Sum_probs=6.4
Q ss_pred cCCCCeeeC
Q psy5836 7 RCPPRSFPN 15 (66)
Q Consensus 7 ~C~~g~y~~ 15 (66)
.|+.|||.+
T Consensus 188 ~C~~g~~G~ 196 (423)
T 2gy5_A 188 RCEAQKWGP 196 (423)
T ss_dssp SSCTTEEST
T ss_pred cCCCCCCCC
Confidence 577888764
No 47
>1eai_C Protein (chymotrypsin/elastase isoinhibitor 1); serine proteinase, ascaris SUMM, protein inhibitor; 2.40A {Ascaris suum} SCOP: g.22.1.1
Probab=85.00 E-value=0.94 Score=22.29 Aligned_cols=45 Identities=24% Similarity=0.591 Sum_probs=24.5
Q ss_pred ccCCCCeeeCCccccccCccccccCCCCC----cccccc----cCCCc-ccccccccccc
Q psy5836 6 SRCPPRSFPNQGGVCWPCHESCETCAGAG----QDSCLT----CAPAH-LRVTDLAICLQ 56 (66)
Q Consensus 6 ~~C~~g~y~~~~~~C~~C~~~C~~C~g~~----~~~C~~----C~~~~-~~~~~~~~Cv~ 56 (66)
..||.+..+ ..|..|..+|.. +. ...|+. |..|+ |++...+.||.
T Consensus 3 ~~C~~ne~y---~~Cg~C~~tC~~---~~~~~C~~~C~~~GC~C~~G~g~vr~~~g~CV~ 56 (61)
T 1eai_C 3 ESCGPNEVW---TECTGCEMKCGP---DENTPCPLMCRRPSCECSPGRGMRRTNDGKCIP 56 (61)
T ss_dssp TTCCTTCEE---ESSBCCCCBSSC---CTTCEEESSCBCCEEECCGGGTEEECTTSCEEE
T ss_pred CcCCCCCEe---CcCCCCCCccCc---CCCCCCcCccCCCCCCCCCCCcEEECCCCCEec
Confidence 357765433 234456555543 32 235766 77764 44435688885
No 48
>2p3f_N Anti-coagulant protein 5; factor XA, hydrolase; 3.10A {Ancylostoma caninum}
Probab=83.68 E-value=2.3 Score=21.86 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=14.3
Q ss_pred cCCCcccccccccccc--ccccC
Q psy5836 41 CAPAHLRVTDLAICLQ--QCPEG 61 (66)
Q Consensus 41 C~~~~~~~~~~~~Cv~--~Cp~g 61 (66)
|..||++..+.+.||. .||.+
T Consensus 51 C~~G~vr~~~~g~CV~~~~Cp~~ 73 (78)
T 2p3f_N 51 CKDGFYRDTVIGDCVREEECDQH 73 (78)
T ss_dssp ECSSCEEETTTTEEECGGGCCCC
T ss_pred cCCCEeEcCCCCceECHHHCCCC
Confidence 6788877543389996 57653
No 49
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus}
Probab=83.20 E-value=0.86 Score=30.38 Aligned_cols=25 Identities=28% Similarity=0.713 Sum_probs=15.0
Q ss_pred ccccccCCCccccccccccccccccCcccC
Q psy5836 36 DSCLTCAPAHLRVTDLAICLQQCPEGYFES 65 (66)
Q Consensus 36 ~~C~~C~~~~~~~~~~~~Cv~~Cp~g~y~~ 65 (66)
..|+.|..+.. +..|- .|.+|||.+
T Consensus 357 G~C~~C~~nt~----G~~CE-rC~~GYyg~ 381 (403)
T 2y38_A 357 GVCLDCQHHTT----GINCE-RCLPGFFRA 381 (403)
T ss_dssp EEESSCCSSEE----STTSC-EECTTCEEC
T ss_pred CCCCCCcCcCc----CCCCC-cCCCCccCC
Confidence 36666664432 34454 688888865
No 50
>3ssb_I IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}
Probab=77.45 E-value=1 Score=19.52 Aligned_cols=14 Identities=21% Similarity=0.475 Sum_probs=9.2
Q ss_pred CCCCeeeCCccccc
Q psy5836 8 CPPRSFPNQGGVCW 21 (66)
Q Consensus 8 C~~g~y~~~~~~C~ 21 (66)
|++||+.|.++.|.
T Consensus 9 C~~G~vrn~~G~CV 22 (32)
T 3ssb_I 9 CEDGYARDVNGKCI 22 (32)
T ss_dssp ECTTEEECTTSCEE
T ss_pred cCCCcEECCCCCEE
Confidence 57788776655553
No 51
>1xu1_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 1.90A {Homo sapiens} SCOP: g.24.1.2 PDB: 1xut_A
Probab=76.86 E-value=0.73 Score=21.37 Aligned_cols=31 Identities=19% Similarity=0.463 Sum_probs=21.4
Q ss_pred ccCCC--CeeeCC-ccccccCccccccCCCCCcccccc
Q psy5836 6 SRCPP--RSFPNQ-GGVCWPCHESCETCAGAGQDSCLT 40 (66)
Q Consensus 6 ~~C~~--g~y~~~-~~~C~~C~~~C~~C~g~~~~~C~~ 40 (66)
..||. |.|.|. -..|.+|.+.|. +.+.+|..
T Consensus 2 ~~C~~eqg~YwD~Ll~~CisC~~~C~----q~pk~Ca~ 35 (42)
T 1xu1_R 2 LSCRKEQGKFYDHLLRDCISCASICG----QHPKQCAY 35 (42)
T ss_dssp CCCCGGGTEEEETTTTEEEEGGGGTT----SCCGGGHH
T ss_pred CCCcHHHHHHHHHHHHhhcchHhhhC----cCHHHHHH
Confidence 36886 447776 789999998875 34456654
No 52
>1ata_A Ascaris trypsin inhibitor; proteinase inhibitor(trypsin); NMR {Ascaris suum} SCOP: g.22.1.1 PDB: 1atb_A 1atd_A 1ate_A
Probab=73.99 E-value=6.3 Score=19.27 Aligned_cols=15 Identities=20% Similarity=0.592 Sum_probs=9.6
Q ss_pred cC--CCcccccccccccc
Q psy5836 41 CA--PAHLRVTDLAICLQ 56 (66)
Q Consensus 41 C~--~~~~~~~~~~~Cv~ 56 (66)
|. .||++. ..+.||.
T Consensus 40 C~~~~G~vr~-~~g~CV~ 56 (62)
T 1ata_A 40 CIASAGFVRD-AQGNCIK 56 (62)
T ss_dssp CCTTTTEEEE-TTTEEEE
T ss_pred cCCCCCeEEC-CCCCEEC
Confidence 56 666653 4678885
No 53
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=70.32 E-value=3.6 Score=28.10 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=8.0
Q ss_pred CCCCeeeCCccccccCccc
Q psy5836 8 CPPRSFPNQGGVCWPCHES 26 (66)
Q Consensus 8 C~~g~y~~~~~~C~~C~~~ 26 (66)
|..||-. .+..|+.|.+.
T Consensus 267 C~~G~e~-~~~~C~aC~~g 284 (536)
T 3fl7_A 267 CQAGYEK-VEDACQACSPG 284 (536)
T ss_dssp ECTTEEE-ETTEEEECCTT
T ss_pred ccCcccc-CCceeeecCCC
Confidence 4445432 23445555443
No 54
>1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1
Probab=68.17 E-value=3.7 Score=20.22 Aligned_cols=22 Identities=32% Similarity=0.750 Sum_probs=13.2
Q ss_pred ccccccCCCccccccccccccccccC
Q psy5836 36 DSCLTCAPAHLRVTDLAICLQQCPEG 61 (66)
Q Consensus 36 ~~C~~C~~~~~~~~~~~~Cv~~Cp~g 61 (66)
..|+.|... + ....|+..||.+
T Consensus 35 ~~C~~C~~~-~---~~~~C~~~CP~~ 56 (80)
T 1rgv_A 35 TKCSECVGA-F---DEPQCRLVCPAD 56 (80)
T ss_dssp TTCCTTTTT-C---SSCHHHHHCSSC
T ss_pred hhCcCCCCc-C---CccHHHHhcCcc
Confidence 456666421 1 235788888876
No 55
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=61.44 E-value=13 Score=23.88 Aligned_cols=49 Identities=20% Similarity=0.466 Sum_probs=23.7
Q ss_pred cCCCCeeeCCcccccc---Cc--ccc-ccCC-CCCcccccccCCCcccccccccccc
Q psy5836 7 RCPPRSFPNQGGVCWP---CH--ESC-ETCA-GAGQDSCLTCAPAHLRVTDLAICLQ 56 (66)
Q Consensus 7 ~C~~g~y~~~~~~C~~---C~--~~C-~~C~-g~~~~~C~~C~~~~~~~~~~~~Cv~ 56 (66)
.||.||....+..|+. |. ..| .+|. .++...|. |..+|.+..+...|..
T Consensus 24 ~C~~G~~~~~~~~C~dideC~~~~~C~~~C~n~~g~~~C~-C~~g~~~~~~~~~C~~ 79 (400)
T 3p5b_L 24 LCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQ-CEEGFQLDPHTKACKA 79 (400)
T ss_dssp ECCTTEEECSSSCEEECCCCSTTSSCSSCCBCCSSSCBCC-CCTTCCCCTTTSSCCC
T ss_pred ECCCCCCcCCCCcccCchhhhccCCCCCccCCCccceeee-ccccccccccccceee
Confidence 5888987533445542 11 111 1222 12344553 6777665544555543
No 56
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}
Probab=55.13 E-value=14 Score=18.63 Aligned_cols=14 Identities=29% Similarity=0.520 Sum_probs=7.9
Q ss_pred cCCCCeeeCC-cccc
Q psy5836 7 RCPPRSFPNQ-GGVC 20 (66)
Q Consensus 7 ~C~~g~y~~~-~~~C 20 (66)
.|+.||..+. ...|
T Consensus 28 ~C~~G~~~~~~g~~C 42 (87)
T 1z6c_A 28 ECPEGYRYNLKSKSC 42 (87)
T ss_dssp SSSTTCEEETTTTEE
T ss_pred ECCCCceECCCCCcC
Confidence 3788876532 3444
No 57
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=54.86 E-value=4.6 Score=20.92 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=6.9
Q ss_pred CCCCeeeCCcccc
Q psy5836 8 CPPRSFPNQGGVC 20 (66)
Q Consensus 8 C~~g~y~~~~~~C 20 (66)
|+.||+.+..+.|
T Consensus 52 C~~G~vr~~~g~C 64 (84)
T 2h9e_C 52 CEEGFYRNKDDKC 64 (84)
T ss_dssp ECSSCEECTTCCE
T ss_pred CCCCeEEcCCCCE
Confidence 4566666544444
No 58
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*
Probab=46.23 E-value=8.1 Score=18.02 Aligned_cols=25 Identities=28% Similarity=0.545 Sum_probs=17.7
Q ss_pred ccccccCCCcccccccccccc--ccccC
Q psy5836 36 DSCLTCAPAHLRVTDLAICLQ--QCPEG 61 (66)
Q Consensus 36 ~~C~~C~~~~~~~~~~~~Cv~--~Cp~g 61 (66)
..| +|..+|.|..+...|++ .||-|
T Consensus 21 ~~C-~C~~Gy~L~~Dg~tC~d~dec~cg 47 (53)
T 2bz6_L 21 RSC-RCHEGYSLLADGVSCTPTVEYPCG 47 (53)
T ss_dssp EEE-ECCTTEEECTTSSCEEECSSSCTT
T ss_pred EEe-eCCCCCEECCCCCcccCCccccCC
Confidence 456 68889888777778875 46544
No 59
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=46.18 E-value=6.8 Score=17.75 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=12.7
Q ss_pred CcccccccCCCccccccccccc
Q psy5836 34 GQDSCLTCAPAHLRVTDLAICL 55 (66)
Q Consensus 34 ~~~~C~~C~~~~~~~~~~~~Cv 55 (66)
+...| +|..+|.+..+...|+
T Consensus 31 Gsy~C-~C~~Gy~~~~d~~~C~ 51 (53)
T 1apq_A 31 GGYFC-SCRPGYELQEDRHSCQ 51 (53)
T ss_dssp TEEEE-ECSTTCEECTTSSCEE
T ss_pred CCeEE-ECCCCCeECCCCCccC
Confidence 34566 5777776655555554
No 60
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A
Probab=42.77 E-value=12 Score=20.03 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=3.5
Q ss_pred cccCcc
Q psy5836 58 CPEGYF 63 (66)
Q Consensus 58 Cp~g~y 63 (66)
|+.||.
T Consensus 104 C~~G~~ 109 (118)
T 1dx5_I 104 CGPDSA 109 (118)
T ss_dssp ECSSSS
T ss_pred CCCCCc
Confidence 566654
No 61
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=40.23 E-value=11 Score=17.49 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=19.9
Q ss_pred CCcccccccCCCcccccccccccc--ccccCc
Q psy5836 33 AGQDSCLTCAPAHLRVTDLAICLQ--QCPEGY 62 (66)
Q Consensus 33 ~~~~~C~~C~~~~~~~~~~~~Cv~--~Cp~g~ 62 (66)
++...| +|.+||.|..+...|+. .||-|.
T Consensus 19 ~Gsy~C-~C~~Gy~L~~d~~~C~didec~cg~ 49 (55)
T 2jkh_L 19 QNSVVC-SCARGYTLADNGKACIPTGPYPCGK 49 (55)
T ss_dssp TTEEEE-ECCTTEEECTTSSCEEESSSSCTTC
T ss_pred CCCeEE-eCCCCCEECCCCCeeccCccccCCC
Confidence 345667 68999888766778875 466553
No 62
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=40.22 E-value=11 Score=18.68 Aligned_cols=8 Identities=25% Similarity=0.588 Sum_probs=4.1
Q ss_pred ccCCCccc
Q psy5836 40 TCAPAHLR 47 (66)
Q Consensus 40 ~C~~~~~~ 47 (66)
+|.+||.+
T Consensus 56 ~C~~Gy~~ 63 (71)
T 2kl7_A 56 PCPPGYEP 63 (71)
T ss_dssp CSCTTEEE
T ss_pred CCCCCeee
Confidence 45555544
No 63
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=38.77 E-value=13 Score=23.61 Aligned_cols=48 Identities=21% Similarity=0.449 Sum_probs=15.3
Q ss_pred cCCCCeeeCC-cccccc---------CccccccCCCCCcccccccCCCccccccccccccc
Q psy5836 7 RCPPRSFPNQ-GGVCWP---------CHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQ 57 (66)
Q Consensus 7 ~C~~g~y~~~-~~~C~~---------C~~~C~~C~g~~~~~C~~C~~~~~~~~~~~~Cv~~ 57 (66)
.|+.||..+. +..|.. |+..|.. .++...| .|.+++.+..+...|...
T Consensus 27 ~C~~G~~l~~~~~~C~d~~eC~~~~~C~~~C~~--~~g~~~C-~C~~g~~l~~d~~~C~~~ 84 (386)
T 3v65_B 27 TCHTGYRLTEDGRTCQDVNECAEEGYCSQGCTN--SEGAFQC-WCEAGYELRPDRRSCKAL 84 (386)
T ss_dssp -------------------------CCTTEEC-------CCE-ECCTTEEECTTSSCEEEC
T ss_pred ECCCCceECCCCCccCccceeCCcCcccCcCCC--CCCCCeE-EECCCceEcCCCCeECCc
Confidence 4788886432 344432 3222221 2334566 677777765555667643
No 64
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A
Probab=38.75 E-value=8.9 Score=20.40 Aligned_cols=15 Identities=20% Similarity=0.187 Sum_probs=8.1
Q ss_pred cCCCCeeeCCccccc
Q psy5836 7 RCPPRSFPNQGGVCW 21 (66)
Q Consensus 7 ~C~~g~y~~~~~~C~ 21 (66)
.|+.||..+....|+
T Consensus 53 ~C~~Gy~g~~g~~C~ 67 (107)
T 2w2n_E 53 LCPDGFQLVAQRRCE 67 (107)
T ss_dssp ECCTTCEEETTTEEE
T ss_pred ECCCCccccCCCccc
Confidence 467777653334444
No 65
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Probab=38.65 E-value=46 Score=18.44 Aligned_cols=22 Identities=18% Similarity=0.400 Sum_probs=12.6
Q ss_pred CcccccccCCCcccccccccccc
Q psy5836 34 GQDSCLTCAPAHLRVTDLAICLQ 56 (66)
Q Consensus 34 ~~~~C~~C~~~~~~~~~~~~Cv~ 56 (66)
+...| .|.++|.+..+...|..
T Consensus 105 g~y~C-~C~~Gy~l~~dG~~C~~ 126 (146)
T 1x7a_L 105 SKVLC-SCTTGYRLAPDQKSCKP 126 (146)
T ss_dssp SCCCC-BCCTTEEECTTSSSEEE
T ss_pred CCEEe-EcCCCcEeCCCCCcCCC
Confidence 34556 47777766544455654
No 66
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=36.77 E-value=44 Score=23.22 Aligned_cols=21 Identities=14% Similarity=0.314 Sum_probs=11.9
Q ss_pred cccccccCCCcccccccccccc
Q psy5836 35 QDSCLTCAPAHLRVTDLAICLQ 56 (66)
Q Consensus 35 ~~~C~~C~~~~~~~~~~~~Cv~ 56 (66)
...| +|.++|.+..+...|..
T Consensus 353 ~y~C-~C~~G~~~~~~~~~C~~ 373 (699)
T 1n7d_A 353 GYKC-QCEEGFQLDPHTKACKA 373 (699)
T ss_dssp CBCC-CCCSSCBCCSSCCCCBC
T ss_pred Ceee-eeecccccCCCCCcccc
Confidence 4455 47777666544555653
No 67
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1
Probab=36.18 E-value=13 Score=17.11 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=16.7
Q ss_pred CCcccccccCCCcccccccccccc
Q psy5836 33 AGQDSCLTCAPAHLRVTDLAICLQ 56 (66)
Q Consensus 33 ~~~~~C~~C~~~~~~~~~~~~Cv~ 56 (66)
++...| +|..||.|..+...|++
T Consensus 16 ~gs~~C-~C~~Gy~L~~d~~tC~d 38 (51)
T 1kig_L 16 RSEVRC-SCAHGYVLGDDSKSCVS 38 (51)
T ss_dssp TTEECC-CCCTTEEECTTSSCEEE
T ss_pred CCCeEE-eCCCCcEECCCCCcccc
Confidence 345667 68999888767778875
No 68
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*
Probab=35.63 E-value=12 Score=17.87 Aligned_cols=21 Identities=14% Similarity=0.366 Sum_probs=15.4
Q ss_pred cccccccCCCcccccccccccc
Q psy5836 35 QDSCLTCAPAHLRVTDLAICLQ 56 (66)
Q Consensus 35 ~~~C~~C~~~~~~~~~~~~Cv~ 56 (66)
...| +|..||.|..+...|++
T Consensus 20 s~~C-~C~~Gy~L~~D~~tC~d 40 (59)
T 2wph_E 20 KVVC-SCTEGYRLAENQKSCEP 40 (59)
T ss_dssp CEEE-ECCTTEEECTTSSCEEE
T ss_pred CEEe-eCCCCcEECCCCCcccC
Confidence 4566 68888888766677774
No 69
>1hx2_A BSTI; beta-sheet disulfide-rich, hydrolase inhibitor; NMR {Bombina bombina} SCOP: g.22.1.2
Probab=34.04 E-value=14 Score=17.47 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=6.4
Q ss_pred CCCC--eeeCCcccc
Q psy5836 8 CPPR--SFPNQGGVC 20 (66)
Q Consensus 8 C~~g--~y~~~~~~C 20 (66)
||+| |+.+.++.|
T Consensus 40 C~~Gtv~v~~~~~~C 54 (60)
T 1hx2_A 40 CISGTVLKSKDSSEC 54 (60)
T ss_dssp ECTTCEESSTTCSSE
T ss_pred CCCCCeeEECCCCCE
Confidence 4566 554434444
No 70
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=31.13 E-value=39 Score=24.11 Aligned_cols=22 Identities=18% Similarity=0.375 Sum_probs=12.6
Q ss_pred CcccccccCCCcccccccccccc
Q psy5836 34 GQDSCLTCAPAHLRVTDLAICLQ 56 (66)
Q Consensus 34 ~~~~C~~C~~~~~~~~~~~~Cv~ 56 (66)
+...|. |..||.+..+...|..
T Consensus 370 gsy~C~-C~~Gy~l~~~~~~C~~ 391 (791)
T 3m0c_C 370 GGYKCQ-CEEGFQLDPHTKACKA 391 (791)
T ss_dssp SCBCCC-CCSSEECCSSCCCCEE
T ss_pred CCceee-cCCCCEeCCCCceeee
Confidence 345564 7777766544556643
No 71
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*
Probab=28.69 E-value=18 Score=17.82 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=18.3
Q ss_pred cccccccCCCcccccccccccc--ccccC
Q psy5836 35 QDSCLTCAPAHLRVTDLAICLQ--QCPEG 61 (66)
Q Consensus 35 ~~~C~~C~~~~~~~~~~~~Cv~--~Cp~g 61 (66)
...| +|..||.|..+...|+. .||-|
T Consensus 26 s~~C-~C~~Gy~L~~D~~tC~d~dec~Cg 53 (69)
T 1kli_L 26 KRSC-RCHEGYSLLADGVSCTPTVEYPCG 53 (69)
T ss_dssp EEEE-ECCTTEEECTTSSCEEECSSSCTT
T ss_pred CEEE-eCCCCCeECCCCCcccCcccccCC
Confidence 3566 69999988777788875 35443
No 72
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus}
Probab=28.62 E-value=75 Score=21.24 Aligned_cols=9 Identities=11% Similarity=0.224 Sum_probs=6.4
Q ss_pred cCCCCeeeC
Q psy5836 7 RCPPRSFPN 15 (66)
Q Consensus 7 ~C~~g~y~~ 15 (66)
.|+.|||..
T Consensus 422 ~C~~Gy~G~ 430 (525)
T 4aqs_A 422 VCKEGFYDL 430 (525)
T ss_dssp EECTTEECC
T ss_pred CCCCCCcCC
Confidence 577888754
No 73
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.16 E-value=24 Score=18.18 Aligned_cols=14 Identities=14% Similarity=0.444 Sum_probs=7.8
Q ss_pred CCeeeCCccccccC
Q psy5836 10 PRSFPNQGGVCWPC 23 (66)
Q Consensus 10 ~g~y~~~~~~C~~C 23 (66)
.|++.+....|..|
T Consensus 35 LG~l~~~g~~C~~C 48 (76)
T 2csz_A 35 LGRLSPKTNTCRGC 48 (76)
T ss_dssp CSSSCTTTSEETTT
T ss_pred ccccccCCCcCccc
Confidence 35555555666655
No 74
>1sop_A Mini-collagen; collagen oxidative refolding, structural protein; NMR {Synthetic} SCOP: g.71.1.1 PDB: 1sp7_A
Probab=24.90 E-value=27 Score=14.22 Aligned_cols=7 Identities=57% Similarity=1.625 Sum_probs=4.3
Q ss_pred cccccCC
Q psy5836 3 TCVSRCP 9 (66)
Q Consensus 3 ~Cv~~C~ 9 (66)
+||.+||
T Consensus 10 qCvpsCp 16 (26)
T 1sop_A 10 QCVPTCP 16 (26)
T ss_dssp CCCTTSC
T ss_pred cccCCCC
Confidence 4666665
No 75
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=24.43 E-value=26 Score=15.47 Aligned_cols=10 Identities=20% Similarity=0.547 Sum_probs=7.7
Q ss_pred cccccccccC
Q psy5836 52 AICLQQCPEG 61 (66)
Q Consensus 52 ~~Cv~~Cp~g 61 (66)
+.|+..||.+
T Consensus 45 ~~C~~~CP~~ 54 (59)
T 1dwl_A 45 QDAIDACPVE 54 (59)
T ss_dssp GTGGGGSTTC
T ss_pred HHHHHhCCHh
Confidence 4688889876
No 76
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1
Probab=23.15 E-value=23 Score=19.88 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=13.2
Q ss_pred cccccccCCCccccccccccccc
Q psy5836 35 QDSCLTCAPAHLRVTDLAICLQQ 57 (66)
Q Consensus 35 ~~~C~~C~~~~~~~~~~~~Cv~~ 57 (66)
...| +|.+||.|..+...|+..
T Consensus 147 ~~~C-~C~~Gy~l~~d~~~C~~~ 168 (170)
T 1szb_A 147 GFYC-SCRAGYVLHRNKRTCSEQ 168 (170)
T ss_dssp EEEE-ECCTTEEECTTSSCEEEC
T ss_pred CEEE-eCCCCcEECCCCCccccc
Confidence 3456 577777665555666543
No 77
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus}
Probab=22.58 E-value=34 Score=22.43 Aligned_cols=7 Identities=29% Similarity=0.657 Sum_probs=2.7
Q ss_pred cccccCC
Q psy5836 37 SCLTCAP 43 (66)
Q Consensus 37 ~C~~C~~ 43 (66)
.|..|++
T Consensus 363 ~C~pCaA 369 (375)
T 4aqt_A 363 ACSPAAA 369 (375)
T ss_dssp SCEEC--
T ss_pred CCcCCcC
Confidence 4555553
No 78
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=22.37 E-value=34 Score=15.08 Aligned_cols=13 Identities=23% Similarity=0.807 Sum_probs=9.8
Q ss_pred CcccccCCCCeee
Q psy5836 2 STCVSRCPPRSFP 14 (66)
Q Consensus 2 ~~Cv~~C~~g~y~ 14 (66)
+.|+..||.+-+.
T Consensus 12 ~~C~~~CP~~ai~ 24 (55)
T 2fdn_A 12 GACEPECPVNAIS 24 (55)
T ss_dssp CTTGGGCTTCCEE
T ss_pred hhHHHHCCccccC
Confidence 4689999987554
No 79
>1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A
Probab=22.15 E-value=37 Score=14.95 Aligned_cols=7 Identities=43% Similarity=1.407 Sum_probs=3.0
Q ss_pred ccccccc
Q psy5836 54 CLQQCPE 60 (66)
Q Consensus 54 Cv~~Cp~ 60 (66)
|+..||.
T Consensus 16 C~~~Cp~ 22 (60)
T 1rof_A 16 CENLCPD 22 (60)
T ss_dssp STTTCTT
T ss_pred HHHhCcH
Confidence 4444443
No 80
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=21.75 E-value=34 Score=16.12 Aligned_cols=19 Identities=32% Similarity=1.064 Sum_probs=12.0
Q ss_pred ccccCCCCCc---ccccccCCC
Q psy5836 26 SCETCAGAGQ---DSCLTCAPA 44 (66)
Q Consensus 26 ~C~~C~g~~~---~~C~~C~~~ 44 (66)
.|..|.|.+. +.|..|...
T Consensus 11 ~C~~C~GsG~~i~~~C~~C~G~ 32 (53)
T 3lcz_A 11 TCPNCNGSGREEPEPCPKCLGK 32 (53)
T ss_dssp ECTTTTTSCEETTEECTTTTTS
T ss_pred cCcCCcccccCCCCcCCCCCCc
Confidence 4666777664 567777643
Done!