RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5836
         (66 letters)



>gnl|CDD|214589 smart00261, FU, Furin-like repeats. 
          Length = 45

 Score = 39.0 bits (91), Expect = 4e-06
 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 17 GGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
           G C PCH  C TC G G D C +C            C+ +CP G +
Sbjct: 1  DGECKPCHPECATCTGPGPDDCTSCKHGFFLDGG--KCVSECPPGTY 45


>gnl|CDD|238021 cd00064, FU, Furin-like repeats. Cysteine rich region. Exact
          function of the domain is not known. Furin is a
          serine-kinase dependent proprotein processor. Other
          members of this family include endoproteases and cell
          surface receptors.
          Length = 49

 Score = 36.3 bits (84), Expect = 4e-05
 Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)

Query: 22 PCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFES 65
          PCH SC TC G G D C +C   H    D   C+ +CPEG +  
Sbjct: 1  PCHPSCATCTGPGPDQCTSC--RHGFYLDGGTCVSECPEGTYAD 42


>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine
           Kinases, Apoptosis-associated tyrosine kinases.  Protein
           Tyrosine Kinase (PTK) family; Apoptosis-associated
           tyrosine kinase (Aatyk) subfamily; catalytic (c) domain.
           The Aatyk subfamily is also referred to as the lemur
           tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1
           (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and
           similar proteins. The PTKc family is part of a larger
           superfamily that includes the catalytic domains of other
           kinases such as protein serine/threonine kinases, RIO
           kinases, and phosphoinositide 3-kinase (PI3K). PTKs
           catalyze the transfer of the gamma-phosphoryl group from
           ATP to tyrosine (tyr) residues in protein substrates.
           Aatyk proteins are mostly receptor tyr kinases (RTKs)
           containing a transmembrane segment and a long C-terminal
           cytoplasmic tail with a catalytic domain. Aatyk1 does
           not contain a transmembrane segment and is a cytoplasmic
           (or nonreceptor) kinase. Aatyk proteins are classified
           as tyr kinases based on overall sequence similarity and
           the phylogenetic tree. However, analysis of catalytic
           residues suggests that Aatyk proteins may be
           multispecific kinases, functioning also as
           serine/threonine kinases. They are involved in neural
           differentiation, nerve growth factor (NGF) signaling,
           apoptosis, and spermatogenesis.
          Length = 269

 Score = 28.7 bits (64), Expect = 0.16
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 37  SCLTCAPAHLRVTDLAICLQQCPEGYFESK 66
           +C   A   +++ D  + L+Q PE Y+ +K
Sbjct: 130 NCQLTADLSVKIGDYGLALEQYPEDYYITK 159


>gnl|CDD|218306 pfam04878, Baculo_p48, Baculovirus P48 protein. 
          Length = 375

 Score = 28.0 bits (63), Expect = 0.23
 Identities = 6/16 (37%), Positives = 9/16 (56%)

Query: 26  SCETCAGAGQDSCLTC 41
            C++CA   +  CL C
Sbjct: 123 MCDSCAPVNKLECLEC 138


>gnl|CDD|218485 pfam05187, ETF_QO, Electron transfer flavoprotein-ubiquinone
          oxidoreductase.  Electron-transfer
          flavoprotein-ubiquinone oxidoreductase (ETF-QO) in the
          inner mitochondrial membrane accepts electrons from
          electron-transfer flavoprotein which is located in the
          mitochondrial matrix and reduces ubiquinone in the
          mitochondrial membrane. The two redox centres in the
          protein, FAD and a [4Fe4S] cluster, are present in a
          64-kDa monomer.
          Length = 110

 Score = 26.7 bits (60), Expect = 0.60
 Identities = 5/20 (25%), Positives = 10/20 (50%)

Query: 43 PAHLRVTDLAICLQQCPEGY 62
          P HL++ D ++ +      Y
Sbjct: 72 PCHLKLKDPSVPIAVNLPKY 91


>gnl|CDD|173479 PTZ00214, PTZ00214, high cysteine membrane protein Group 4;
           Provisional.
          Length = 800

 Score = 26.8 bits (59), Expect = 0.81
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 6/64 (9%)

Query: 3   TCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHL-----RVTDLAICLQQ 57
           +C   C P +F N  G C PC +SC  C       C  C+P  +       ++ A C+ Q
Sbjct: 416 SCRCVCKP-TFYNSSGTCTPCTDSCAVCKDGTPTGCQQCSPGKILEFSIVSSESADCVDQ 474

Query: 58  CPEG 61
           C  G
Sbjct: 475 CSVG 478


>gnl|CDD|224516 COG1600, COG1600, Uncharacterized Fe-S protein [Energy production
           and conversion].
          Length = 337

 Score = 26.2 bits (58), Expect = 1.2
 Identities = 13/63 (20%), Positives = 17/63 (26%), Gaps = 1/63 (1%)

Query: 4   CVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYF 63
           C+  CP  +      V      S  T    G            R+    IC + CP   F
Sbjct: 193 CLDACPTGALVAPYTVDARRCISYLTIEKGGAPEEF-RPLIGNRIYGCDICQKVCPWNRF 251

Query: 64  ESK 66
              
Sbjct: 252 AQL 254


>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
          Length = 380

 Score = 25.5 bits (56), Expect = 1.8
 Identities = 7/11 (63%), Positives = 9/11 (81%)

Query: 24  HESCETCAGAG 34
           +E+CETC G G
Sbjct: 148 NENCETCNGTG 158


>gnl|CDD|146106 pfam03302, VSP, Giardia variant-specific surface protein. 
          Length = 397

 Score = 24.9 bits (54), Expect = 3.1
 Identities = 14/32 (43%), Positives = 16/32 (50%)

Query: 10  PRSFPNQGGVCWPCHESCETCAGAGQDSCLTC 41
              F   G  C PCHESC+TC+G     C  C
Sbjct: 97  NDGFYKSGDACSPCHESCKTCSGGTASDCTEC 128


>gnl|CDD|235818 PRK06518, PRK06518, hypothetical protein; Provisional.
          Length = 177

 Score = 24.0 bits (52), Expect = 5.6
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 5  VSRCPPRSFPNQGGVCWPC 23
          V  C PR     G   WPC
Sbjct: 56 VDTCAPRQKARLGDQEWPC 74


>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
          Length = 371

 Score = 24.3 bits (54), Expect = 5.9
 Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 6/26 (23%)

Query: 22  PCHESCETCAGAG------QDSCLTC 41
           P   +C+TC G+G        +C TC
Sbjct: 140 PTLVTCDTCHGSGAKPGTSPKTCPTC 165



 Score = 23.9 bits (53), Expect = 7.4
 Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 10/26 (38%)

Query: 20  CWPCH----------ESCETCAGAGQ 35
           C  CH          ++C TC GAGQ
Sbjct: 145 CDTCHGSGAKPGTSPKTCPTCHGAGQ 170


>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
          Length = 374

 Score = 23.8 bits (52), Expect = 7.6
 Identities = 9/18 (50%), Positives = 9/18 (50%), Gaps = 3/18 (16%)

Query: 27  CETCAGAGQ---DSCLTC 41
           C TC G GQ   D C  C
Sbjct: 189 CPTCNGTGQVIEDPCDAC 206


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.136    0.501 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,883,010
Number of extensions: 176344
Number of successful extensions: 274
Number of sequences better than 10.0: 1
Number of HSP's gapped: 269
Number of HSP's successfully gapped: 27
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.5 bits)