RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5836
(66 letters)
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 45.7 bits (107), Expect = 8e-08
Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 9/67 (13%)
Query: 3 TCVSRCPPRSFPNQGGVCWP---CHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCP 59
CV CPP + Q C C + C + + C H V C+ +CP
Sbjct: 236 RCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGC------HQYVIHNNKCIPECP 289
Query: 60 EGYFESK 66
GY +
Sbjct: 290 SGYTMNS 296
Score = 34.5 bits (78), Expect = 8e-04
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 1 MSTCVSRCPPRSFPNQG-GVCWPCHESCE-TCAGAGQDS-CLTCAPAHLRVTDLAICLQQ 57
S C CP + CH C C+ + C+ C C++
Sbjct: 185 HSHCQKVCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTKCVACRN----FYLDGRCVET 240
Query: 58 CPEGYFESK 66
CP Y+ +
Sbjct: 241 CPPPYYHFQ 249
Score = 24.5 bits (52), Expect = 3.1
Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 2/49 (4%)
Query: 20 CWPCHESCETCAGAGQDSCLTC--APAHLRVTDLAICLQQCPEGYFESK 66
C + C A + T R + C + CP
Sbjct: 152 NEECGDICPGTAKGKTNCPATVINGQFVERCWTHSHCQKVCPTICKSHG 200
Score = 23.3 bits (49), Expect = 7.6
Identities = 7/47 (14%), Positives = 14/47 (29%), Gaps = 1/47 (2%)
Query: 2 STCVSRCPPRSF-PNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLR 47
+ C+ CP + +C PC C + + +
Sbjct: 282 NKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQ 328
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 39.9 bits (92), Expect = 9e-06
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
+TC CPP N + + GA +C+ P + VTD C++ C
Sbjct: 234 ATCKDTCPPLMLYNPTTYQMDVNPEGKYSFGA---TCVKKCPRNYVVTDHGSCVRACGAD 290
Query: 62 YFE 64
+E
Sbjct: 291 SYE 293
Score = 32.6 bits (73), Expect = 0.005
Identities = 17/62 (27%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 3 TCVSRCPPRSFPNQGGVCWPCHESCET-CAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
C +C R C CH C C G + CL C D A C CP
Sbjct: 190 ICAQQCSGRCRGKSPSDC--CHNQCAAGCTGPRESDCLVCRK----FRDEATCKDTCPPL 243
Query: 62 YF 63
Sbjct: 244 ML 245
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 39.5 bits (91), Expect = 1e-05
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 9/65 (13%)
Query: 3 TCVSRCPPRSFPNQGGVCWP---CHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCP 59
CV CPP + Q C C + C + + C H V C+ +CP
Sbjct: 236 RCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGC------HQYVIHNNKCIPECP 289
Query: 60 EGYFE 64
GY
Sbjct: 290 SGYTM 294
Score = 26.0 bits (56), Expect = 1.1
Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 7/65 (10%)
Query: 3 TCVSRCPPRSFPNQGG-VCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
C + C +G C +C + C+ C C++ CP
Sbjct: 191 VCPTICKSHGCTAEGLCCHSECLGNCSQPDDPTK--CVACRN----FYLDGRCVETCPPP 244
Query: 62 YFESK 66
Y+ +
Sbjct: 245 YYHFQ 249
>1igr_A Insulin-like growth factor receptor 1; hormone receptor, insulin
receptor family; HET: NAG FUC BMA MAN; 2.60A {Homo
sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
Length = 478
Score = 37.9 bits (87), Expect = 6e-05
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 7/64 (10%)
Query: 2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
CV CPP ++ +G C + + V C+Q+CP G
Sbjct: 228 GVCVPACPPNTYRFEGWRCVDRDFCANIL-------SAESSDSEGFVIHDGECMQECPSG 280
Query: 62 YFES 65
+ +
Sbjct: 281 FIRN 284
Score = 25.2 bits (54), Expect = 2.0
Identities = 7/61 (11%), Positives = 14/61 (22%), Gaps = 4/61 (6%)
Query: 3 TCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGY 62
V PP+ + CE + + + +C C +
Sbjct: 138 YIVGNKPPKECGDLCPGTMEEKPMCEKTTINNEYNYRCWTTNRCQ----KMCPSTCGKRA 193
Query: 63 F 63
Sbjct: 194 C 194
>3i2t_A Epidermal growth factor receptor, isoform A; EGFR, ectodomain,
unliganded, autoinhibited, ATP nucleotide-binding,
tyrosine-protein kinase; HET: NDG NAG BMA; 2.70A
{Drosophila melanogaster} PDB: 3ltf_A* 3ltg_A
Length = 551
Score = 33.1 bits (74), Expect = 0.003
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 3 TCVSRCP--PRSFPNQGGVCWPCHESCETCAGAGQDSCLTCA 42
TC++ C ++ C CH C TC GAG D C C
Sbjct: 508 TCIADCGYISNAYKFDNRTCKICHPECRTCNGAGADHCQECV 549
Score = 33.1 bits (74), Expect = 0.003
Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 3 TCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGY 62
C CPP N + + G +C+ P HL + D C++ CP+
Sbjct: 237 VCKEECPPMRKYNPTTYVLETNPEGKYAYG---ATCVKECPGHL-LRDNGACVRSCPQDK 292
Query: 63 FES 65
+
Sbjct: 293 MDK 295
>1n8y_C Protooncoprotein; tyrosin kinase receptor, cell surface receptor,
transferase; HET: NAG; 2.40A {Rattus norvegicus} SCOP:
c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1 PDB: 1n8z_C* 3be1_A*
1s78_A* 3mzw_A* 3n85_A* 2a91_A* 3h3b_A
Length = 608
Score = 32.3 bits (72), Expect = 0.006
Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 2 STCVSRCPPRSFPNQGGVCWPCHESC------ETCAGAGQDSCLTCAPAHLRVTDLAICL 55
C C PCH C ETC G+ D C CA D + C+
Sbjct: 521 EECRVWKGLPREYVSDKRCLPCHPECQPQNSSETCFGSEADQCAACAH----YKDSSSCV 576
Query: 56 QQCPEGYFESK 66
+CP G
Sbjct: 577 ARCPSGVKPDL 587
Score = 31.5 bits (70), Expect = 0.010
Identities = 15/62 (24%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 3 TCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGY 62
C CP N + GA SC+T P + T++ C CP
Sbjct: 242 ICELHCPALVTYNTDTFESMHNPEGRYTFGA---SCVTTCPYNYLSTEVGSCTLVCPPNN 298
Query: 63 FE 64
E
Sbjct: 299 QE 300
Score = 26.9 bits (58), Expect = 0.50
Identities = 14/62 (22%), Positives = 16/62 (25%), Gaps = 6/62 (9%)
Query: 2 STCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEG 61
+ C S C C + C G CL C L IC CP
Sbjct: 197 TICTSGCARCKGRLPTDCC--HEQCAAGCTGPKHSDCLAC----LHFNHSGICELHCPAL 250
Query: 62 YF 63
Sbjct: 251 VT 252
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 29.2 bits (64), Expect = 0.056
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 3 TCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGY 62
TC CPP N + + GA +C+ P + VTD C++ C
Sbjct: 235 TCKDTCPPLMLYNPTTYQMDVNPEGKYSFGA---TCVKKCPRNYVVTDHGSCVRACGADS 291
Query: 63 FE 64
+E
Sbjct: 292 YE 293
Score = 27.7 bits (60), Expect = 0.20
Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 11/54 (20%)
Query: 3 TCVSRCPPRSFPNQ----------GGVCWPCHESC-ETCAGAGQDSCLTCAPAH 45
CV CP G VC CH +C C G G C T P H
Sbjct: 566 HCVKTCPAGVMGENNTLVWKYADAGHVCHLCHPNCTYGCTGPGLRGCPTNGPKH 619
Score = 26.1 bits (56), Expect = 0.80
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 10/70 (14%)
Query: 2 STCVSRCPPRSFPNQGGVCWPCHESCE------TCAGAGQDSCLTCAPAHLRVTDLAICL 55
C + C CH C TC G G D+C+ CA D C+
Sbjct: 513 DKCKLLEGEPREFVENSECIQCHPECLPQAMNITCTGRGPDNCIQCAH----YIDGPHCV 568
Query: 56 QQCPEGYFES 65
+ CP G
Sbjct: 569 KTCPAGVMGE 578
>1m6b_A C-ER, receptor protein-tyrosine kinase ERBB-3; cell surface
receptor, immunity, signaling transferase; HET: NAG NDG;
2.60A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1 PDB: 3p11_A*
Length = 621
Score = 27.3 bits (59), Expect = 0.37
Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 10/71 (14%)
Query: 2 STCVSRCPPRSFPNQGGVCWPCHESCE------TCAGAGQDSCLTCAPAHLRVTDLAICL 55
+ C C+ CH C+ TC G+G D+C CA D C+
Sbjct: 512 THCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCAH----FRDGPHCV 567
Query: 56 QQCPEGYFESK 66
CP G +K
Sbjct: 568 SSCPHGVLGAK 578
Score = 25.4 bits (54), Expect = 1.3
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 3 TCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGY 62
CV RCP N+ + + + T G +C V D C++ CP
Sbjct: 235 ACVPRCPQPLVYNK--LTFQLEPNPHTKYQYGGVCVASCPHNF--VVDQTSCVRACPPDK 290
Query: 63 FE 64
E
Sbjct: 291 ME 292
Score = 24.6 bits (52), Expect = 2.9
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 3 TCVSRCPPRSFPNQGGVCWPCHESC-ETCAGAGQDSCLTCA 42
++ P +P+ C PCHE+C + C G CL
Sbjct: 574 VLGAKGPIYKYPDVQNECRPCHENCTQGCKGPELQDCLGQT 614
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG
FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 25.9 bits (57), Expect = 0.89
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 43 PAHLRVTDLAICLQQC------PEGYF 63
PAHL + D ++ + + PE F
Sbjct: 501 PAHLTLKDDSVPVNRNLSIYDGPEQRF 527
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 25.3 bits (54), Expect = 1.7
Identities = 10/52 (19%), Positives = 14/52 (26%)
Query: 7 RCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTDLAICLQQC 58
+C P + C SCE C A C++ C
Sbjct: 77 QCQSFCEPLFPKKSYECLTSCEFLKYILLVKQGDCPAPEKASGFAAACVESC 128
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor,
neuron, central nerve system, SI protein; HET: NAG GLU;
2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A*
2e4y_A*
Length = 555
Score = 24.7 bits (54), Expect = 2.5
Identities = 8/48 (16%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 3 TCVSRCPPRSFPNQGGVCWPCHESCETCAGAGQDSCLTCAPAHLRVTD 50
C+ C P + C C A C +++ D
Sbjct: 506 ICI-PCEPYEYLVDEFTCMDCGP--GQWPTADLSGCYNLPEDYIKWED 550
>3p0y_A Epidermal growth factor receptor; beta-sandwich, antigens EGFR,
immune system; HET: NAG FUL; 1.80A {Homo sapiens} PDB:
3b2u_A* 3c09_A*
Length = 214
Score = 24.4 bits (52), Expect = 2.7
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 6/47 (12%)
Query: 20 CWPCHESCET--CAGAGQDSCLTCAPAHLRVTDLAICLQQCPEGYFE 64
CH C C G C++C V+ C+ + +
Sbjct: 170 GQVCHALCSPEGCWGPEPRDCVSCR----NVSRGRECVDKGNSHHHH 212
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.501
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 960,928
Number of extensions: 44520
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 134
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)