RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5836
         (66 letters)



>d1n8yc4 g.3.9.1 (C:489-608) Protooncoprotein Her2 extracellular
          domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 120

 Score = 26.4 bits (57), Expect = 0.17
 Identities = 19/72 (26%), Positives = 24/72 (33%), Gaps = 10/72 (13%)

Query: 1  MSTCVSRCPPRSFPNQGGVCWPCHESC------ETCAGAGQDSCLTCAPAHLRVTDLAIC 54
          +  C               C PCH  C      ETC G+  D C  CA       D + C
Sbjct: 32 VEECRVWKGLPREYVSDKRCLPCHPECQPQNSSETCFGSEADQCAACAH----YKDSSSC 87

Query: 55 LQQCPEGYFESK 66
          + +CP G     
Sbjct: 88 VARCPSGVKPDL 99


>d1m6ba4 g.3.9.1 (A:480-580) Receptor protein-tyrosine kinase
          Erbb-3 Cys-rich domains {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 101

 Score = 25.1 bits (54), Expect = 0.48
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 10/71 (14%)

Query: 2  STCVSRCPPRSFPNQGGVCWPCHESCE------TCAGAGQDSCLTCAPAHLRVTDLAICL 55
          + C               C+ CH  C+      TC G+G D+C  CA       D   C+
Sbjct: 33 THCNFLNGEPREFAHEAECFSCHPECQPMEGTATCNGSGSDTCAQCA----HFRDGPHCV 88

Query: 56 QQCPEGYFESK 66
            CP G   +K
Sbjct: 89 SSCPHGVLGAK 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.501 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 256,663
Number of extensions: 10864
Number of successful extensions: 117
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 58
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)