BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5837
         (181 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
 pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
          Length = 998

 Score = 27.7 bits (60), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 144 VIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181
           VIRNG       +++ VGD+V+V      P DL ++S 
Sbjct: 146 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISA 183


>pdb|3R64|A Chain A, Crystal Structure Of A Nad-Dependent Benzaldehyde
           Dehydrogenase From Corynebacterium Glutamicum
 pdb|3R64|B Chain B, Crystal Structure Of A Nad-Dependent Benzaldehyde
           Dehydrogenase From Corynebacterium Glutamicum
 pdb|3R64|C Chain C, Crystal Structure Of A Nad-Dependent Benzaldehyde
           Dehydrogenase From Corynebacterium Glutamicum
 pdb|3R64|D Chain D, Crystal Structure Of A Nad-Dependent Benzaldehyde
           Dehydrogenase From Corynebacterium Glutamicum
          Length = 508

 Score = 27.7 bits (60), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 90  FIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLA 133
           F+  ++ IP   P+   T + P+I    +SG+KE IE  K+  A
Sbjct: 314 FVEAVKNIPTGDPSAEGTLVGPVINDSQLSGLKEKIELAKKEGA 357


>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
           Ouabain And The E2p Form Of The Sodium-Potassium Pump
 pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
           Ouabain And The E2p Form Of The Sodium-Potassium Pump
 pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
 pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
          Length = 992

 Score = 27.7 bits (60), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 14/38 (36%), Positives = 21/38 (55%)

Query: 144 VIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181
           VIRNG       +++ VGD+V+V      P DL ++S 
Sbjct: 140 VIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISA 177


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,452,482
Number of Sequences: 62578
Number of extensions: 216584
Number of successful extensions: 515
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 4
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)