Query psy5837
Match_columns 181
No_of_seqs 256 out of 1425
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 19:18:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03190 aminophospholipid tra 100.0 2.8E-33 6E-38 273.1 17.1 143 39-181 66-212 (1178)
2 KOG0206|consensus 100.0 4.4E-31 9.6E-36 254.0 9.5 142 39-181 10-157 (1151)
3 TIGR01652 ATPase-Plipid phosph 100.0 1.6E-30 3.4E-35 252.6 13.3 126 56-181 1-127 (1057)
4 KOG0210|consensus 99.9 5.2E-23 1.1E-27 188.4 11.4 140 41-181 61-204 (1051)
5 TIGR01523 ATPase-IID_K-Na pota 99.9 8.6E-22 1.9E-26 191.5 12.1 122 52-181 35-159 (1053)
6 TIGR01106 ATPase-IIC_X-K sodiu 99.8 1.2E-20 2.5E-25 183.0 12.3 126 53-181 46-182 (997)
7 TIGR01517 ATPase-IIB_Ca plasma 99.8 2E-20 4.3E-25 180.5 11.9 125 53-181 70-207 (941)
8 TIGR01522 ATPase-IIA2_Ca golgi 99.8 2.9E-20 6.2E-25 178.4 12.9 122 52-181 33-158 (884)
9 TIGR01647 ATPase-IIIA_H plasma 99.8 3.3E-20 7.2E-25 175.4 12.8 121 52-181 10-133 (755)
10 PRK10517 magnesium-transportin 99.8 5.5E-20 1.2E-24 176.7 13.3 121 53-181 77-206 (902)
11 TIGR01524 ATPase-IIIB_Mg magne 99.8 1E-19 2.2E-24 174.3 13.2 122 52-181 42-172 (867)
12 PRK15122 magnesium-transportin 99.8 1.5E-19 3.3E-24 173.7 13.2 127 52-181 54-195 (903)
13 KOG0202|consensus 99.8 5.8E-21 1.3E-25 177.8 2.5 122 52-181 32-156 (972)
14 COG0474 MgtA Cation transport 99.8 1.8E-19 4E-24 173.4 10.8 124 53-181 54-181 (917)
15 KOG0204|consensus 99.8 3.3E-19 7.2E-24 166.3 5.0 126 53-181 129-261 (1034)
16 TIGR01657 P-ATPase-V P-type AT 99.8 6E-18 1.3E-22 164.9 13.4 120 53-181 149-272 (1054)
17 TIGR01116 ATPase-IIA1_Ca sarco 99.7 2.3E-17 4.9E-22 159.0 12.1 106 76-181 1-114 (917)
18 PF00122 E1-E2_ATPase: E1-E2 A 99.6 1.9E-14 4E-19 117.3 9.4 69 112-180 2-74 (230)
19 KOG0205|consensus 99.5 3.5E-15 7.5E-20 136.8 3.3 125 52-180 45-174 (942)
20 PRK01122 potassium-transportin 99.4 8E-13 1.7E-17 123.9 11.2 104 78-181 29-146 (679)
21 PRK14010 potassium-transportin 99.4 1.4E-12 3.1E-17 122.1 10.7 104 78-181 28-146 (673)
22 TIGR01497 kdpB K+-transporting 99.4 5.4E-12 1.2E-16 118.2 11.7 104 78-181 28-147 (675)
23 KOG0203|consensus 99.3 4.1E-13 8.9E-18 125.9 1.9 126 53-181 68-204 (1019)
24 KOG0208|consensus 99.3 5.2E-11 1.1E-15 113.4 12.5 120 53-181 170-292 (1140)
25 TIGR01512 ATPase-IB2_Cd heavy 99.2 5E-11 1.1E-15 109.2 10.6 76 106-181 18-96 (536)
26 TIGR01525 ATPase-IB_hvy heavy 99.2 1.3E-10 2.8E-15 106.9 10.1 76 106-181 18-97 (556)
27 TIGR01494 ATPase_P-type ATPase 99.1 1.7E-10 3.7E-15 104.5 8.2 55 126-181 21-75 (499)
28 PRK11033 zntA zinc/cadmium/mer 99.0 1.5E-09 3.2E-14 103.1 11.3 66 116-181 213-284 (741)
29 TIGR01511 ATPase-IB1_Cu copper 98.9 2.1E-08 4.4E-13 92.6 11.9 64 118-181 63-133 (562)
30 PRK10671 copA copper exporting 98.8 1.9E-08 4E-13 96.7 8.5 65 116-180 293-363 (834)
31 KOG0209|consensus 98.7 5.8E-08 1.3E-12 91.8 8.4 115 54-180 174-296 (1160)
32 COG2217 ZntA Cation transport 98.5 5.8E-07 1.2E-11 85.1 9.6 66 115-180 180-252 (713)
33 smart00831 Cation_ATPase_N Cat 98.0 5E-06 1.1E-10 55.0 3.2 44 52-98 19-62 (64)
34 PF00690 Cation_ATPase_N: Cati 98.0 6.8E-06 1.5E-10 55.4 3.2 41 52-95 29-69 (69)
35 KOG0207|consensus 97.8 0.00012 2.7E-09 70.3 8.7 62 119-180 351-419 (951)
36 COG2216 KdpB High-affinity K+ 97.7 2.5E-05 5.5E-10 71.3 3.8 69 112-180 72-145 (681)
37 KOG4383|consensus 92.4 0.41 9E-06 45.9 6.8 72 106-177 88-193 (1354)
38 TIGR01517 ATPase-IIB_Ca plasma 81.5 3.8 8.2E-05 40.5 6.3 64 105-168 131-207 (941)
39 KOG0210|consensus 80.6 10 0.00022 36.9 8.4 107 64-170 90-206 (1051)
40 PRK11507 ribosome-associated p 73.7 4.6 0.0001 27.5 3.1 26 143-168 38-63 (70)
41 PF13275 S4_2: S4 domain; PDB: 68.9 2.7 5.9E-05 28.2 1.1 25 143-167 34-58 (65)
42 PF09926 DUF2158: Uncharacteri 68.7 3.3 7.2E-05 26.6 1.5 12 159-170 2-13 (53)
43 PRK05585 yajC preprotein trans 64.9 19 0.00041 26.3 5.1 12 106-117 18-29 (106)
44 PF12791 RsgI_N: Anti-sigma fa 64.8 9.7 0.00021 24.1 3.1 37 138-174 4-42 (56)
45 PF12148 DUF3590: Protein of u 64.4 3.2 6.9E-05 29.4 0.8 21 149-169 57-77 (85)
46 smart00306 HintN Hint (Hedgeho 63.9 8.9 0.00019 26.2 3.1 27 141-167 73-99 (100)
47 COG1188 Ribosome-associated he 63.7 9 0.00019 27.9 3.1 36 133-171 27-62 (100)
48 TIGR02988 YaaA_near_RecF S4 do 63.5 13 0.00027 23.8 3.5 35 130-166 24-58 (59)
49 PF11694 DUF3290: Protein of u 62.6 26 0.00057 27.2 5.7 21 149-169 97-117 (149)
50 PRK04980 hypothetical protein; 60.8 21 0.00045 26.1 4.5 40 136-180 15-56 (102)
51 PRK10348 ribosome-associated h 59.6 15 0.00032 28.1 3.8 38 131-171 25-62 (133)
52 PTZ00318 NADH dehydrogenase-li 55.8 38 0.00082 30.1 6.3 39 136-180 237-275 (424)
53 PF01455 HupF_HypC: HupF/HypC 52.7 33 0.00072 23.0 4.2 31 140-170 17-50 (68)
54 COG2501 S4-like RNA binding pr 51.8 21 0.00045 24.5 3.1 27 142-168 37-63 (73)
55 PF03120 DNA_ligase_OB: NAD-de 51.0 7.8 0.00017 27.1 1.0 22 153-174 45-67 (82)
56 KOG3416|consensus 47.8 12 0.00025 28.6 1.5 14 157-170 61-74 (134)
57 CHL00113 rps4 ribosomal protei 47.0 29 0.00064 28.2 3.9 36 131-168 105-140 (201)
58 TIGR01524 ATPase-IIIB_Mg magne 44.6 1E+02 0.0022 30.4 7.8 20 148-167 152-171 (867)
59 TIGR03069 PS_II_S4 photosystem 43.5 49 0.0011 27.8 4.8 41 128-170 196-237 (257)
60 PF00122 E1-E2_ATPase: E1-E2 A 43.5 19 0.00042 28.7 2.3 24 146-169 53-76 (230)
61 TIGR01017 rpsD_bact ribosomal 43.3 33 0.00071 27.8 3.6 37 130-168 105-141 (200)
62 PRK14715 DNA polymerase II lar 42.5 19 0.0004 37.4 2.4 30 141-170 989-1018(1627)
63 cd00081 Hint Hedgehog/Intein d 41.9 36 0.00079 24.5 3.4 29 141-169 73-101 (136)
64 TIGR03385 CoA_CoA_reduc CoA-di 41.5 80 0.0017 27.7 6.1 41 136-180 188-228 (427)
65 PF14168 YjzC: YjzC-like prote 41.1 38 0.00082 22.1 3.0 28 147-174 16-45 (57)
66 PRK05327 rpsD 30S ribosomal pr 40.5 44 0.00095 27.1 3.9 37 130-168 108-144 (203)
67 PF01134 GIDA: Glucose inhibit 38.7 86 0.0019 28.2 5.8 41 138-181 107-148 (392)
68 PRK11479 hypothetical protein; 38.5 16 0.00035 31.3 1.1 19 152-170 59-77 (274)
69 PF07591 PT-HINT: Pretoxin HIN 35.4 30 0.00066 25.9 2.1 25 151-175 70-94 (130)
70 cd04451 S1_IF1 S1_IF1: Transla 34.2 81 0.0018 20.3 3.8 21 147-168 31-51 (64)
71 TIGR01657 P-ATPase-V P-type AT 34.1 2.7E+02 0.0059 28.1 9.1 64 109-180 193-256 (1054)
72 cd06555 ASCH_PF0470_like ASC-1 34.0 33 0.00072 25.2 2.1 23 155-177 29-54 (109)
73 PRK08433 flagellar motor switc 33.6 37 0.00081 25.1 2.3 12 157-168 52-63 (111)
74 PRK06788 flagellar motor switc 33.4 36 0.00079 25.5 2.2 22 154-175 43-64 (119)
75 PRK10838 spr outer membrane li 33.2 26 0.00057 28.3 1.5 19 152-170 123-141 (190)
76 TIGR02219 phage_NlpC_fam putat 33.2 23 0.00049 26.6 1.1 17 152-168 71-87 (134)
77 PRK15078 polysaccharide export 32.7 56 0.0012 29.0 3.7 30 139-168 210-251 (379)
78 TIGR01523 ATPase-IID_K-Na pota 32.6 1.1E+02 0.0024 31.0 6.1 21 148-168 139-159 (1053)
79 PF06107 DUF951: Bacterial pro 32.4 33 0.00071 22.4 1.6 12 157-168 1-12 (57)
80 PRK10517 magnesium-transportin 32.3 2.1E+02 0.0045 28.6 7.8 98 74-181 91-193 (902)
81 cd00165 S4 S4/Hsp/ tRNA synthe 32.0 83 0.0018 19.1 3.6 35 133-169 19-53 (70)
82 PRK06033 hypothetical protein; 30.8 46 0.00099 23.1 2.3 12 157-168 27-38 (83)
83 TIGR00074 hypC_hupF hydrogenas 30.7 81 0.0018 21.6 3.5 29 142-170 17-48 (76)
84 PF15584 Imm44: Immunity prote 30.5 23 0.0005 25.4 0.7 18 160-177 13-30 (94)
85 PF01479 S4: S4 domain; Inter 30.2 50 0.0011 19.7 2.2 32 131-164 17-48 (48)
86 COG0522 RpsD Ribosomal protein 29.6 47 0.001 27.2 2.5 37 135-173 114-150 (205)
87 PRK14584 hmsS hemin storage sy 29.5 2.8E+02 0.006 21.7 7.3 13 161-173 132-144 (153)
88 TIGR03169 Nterm_to_SelD pyridi 29.5 1.6E+02 0.0035 25.0 6.0 39 136-180 200-238 (364)
89 PF09874 DUF2101: Predicted me 28.8 1.7E+02 0.0036 24.1 5.4 17 154-170 178-194 (206)
90 PRK04965 NADH:flavorubredoxin 28.7 1.6E+02 0.0036 25.3 5.9 42 137-180 193-234 (377)
91 PRK14898 DNA-directed RNA poly 28.6 58 0.0013 32.2 3.3 29 140-168 169-197 (858)
92 smart00739 KOW KOW (Kyprides, 28.2 45 0.00097 17.3 1.5 14 158-171 2-15 (28)
93 cd06541 ASCH ASC-1 homology or 28.2 61 0.0013 23.1 2.6 23 156-179 29-52 (105)
94 PRK06788 flagellar motor switc 28.1 20 0.00043 26.9 0.0 23 155-177 52-74 (119)
95 smart00532 LIGANc Ligase N fam 28.0 23 0.0005 32.2 0.5 22 153-174 358-380 (441)
96 PF01052 SpoA: Surface present 27.4 44 0.00094 22.2 1.7 14 156-169 27-40 (77)
97 PRK15175 Vi polysaccharide exp 27.3 75 0.0016 28.1 3.5 30 139-168 197-236 (355)
98 KOG3378|consensus 27.1 49 0.0011 28.8 2.2 31 138-168 215-247 (385)
99 COG2323 Predicted membrane pro 27.0 3.5E+02 0.0077 22.4 7.2 21 131-151 84-104 (224)
100 PRK13512 coenzyme A disulfide 25.7 2.3E+02 0.0049 25.2 6.4 39 136-180 198-236 (438)
101 KOG4628|consensus 25.6 2.5E+02 0.0054 25.0 6.4 32 135-166 210-247 (348)
102 PLN00051 RNA-binding S4 domain 25.3 1E+02 0.0022 26.1 3.9 42 127-170 203-245 (267)
103 PF00877 NLPC_P60: NlpC/P60 fa 25.2 51 0.0011 23.0 1.8 21 148-168 42-62 (105)
104 PF07385 DUF1498: Protein of u 25.2 1.3E+02 0.0028 25.0 4.3 29 139-172 136-164 (225)
105 COG0272 Lig NAD-dependent DNA 25.0 41 0.00088 32.3 1.5 23 153-175 363-386 (667)
106 TIGR01116 ATPase-IIA1_Ca sarco 24.8 2.3E+02 0.005 28.2 6.7 23 147-169 93-115 (917)
107 PRK14350 ligA NAD-dependent DN 24.7 30 0.00066 33.2 0.6 22 153-174 360-382 (669)
108 PRK09754 phenylpropionate diox 24.7 2.2E+02 0.0047 24.8 6.0 38 138-180 197-236 (396)
109 COG1018 Hmp Flavodoxin reducta 24.7 60 0.0013 27.4 2.4 32 142-173 70-105 (266)
110 PRK07956 ligA NAD-dependent DN 24.0 31 0.00067 33.1 0.5 22 153-174 363-385 (665)
111 TIGR02480 fliN flagellar motor 23.9 26 0.00057 23.7 0.0 11 157-167 28-38 (77)
112 PRK14351 ligA NAD-dependent DN 23.6 32 0.0007 33.1 0.6 23 152-174 384-407 (689)
113 COG0361 InfA Translation initi 23.4 46 0.00099 22.9 1.1 15 157-171 46-60 (75)
114 cd06552 ASCH_yqfb_like ASC-1 h 23.3 1.1E+02 0.0024 21.2 3.2 23 156-178 27-49 (100)
115 PRK00276 infA translation init 22.9 76 0.0017 21.2 2.2 10 158-167 47-56 (72)
116 COG1873 Protein implicated in 22.8 68 0.0015 22.5 2.0 22 149-170 58-80 (87)
117 COG1585 Membrane protein impli 22.8 3.5E+02 0.0075 20.6 8.5 19 150-168 111-129 (140)
118 PF14898 DUF4491: Domain of un 22.8 2.1E+02 0.0046 20.5 4.5 45 86-130 36-81 (94)
119 PRK08097 ligB NAD-dependent DN 22.7 48 0.001 31.2 1.5 21 154-174 356-377 (562)
120 TIGR03028 EpsE polysaccharide 22.6 1E+02 0.0022 25.3 3.3 31 138-168 200-236 (239)
121 PF02814 UreE_N: UreE urease a 22.5 58 0.0013 21.2 1.5 26 147-172 37-65 (65)
122 TIGR01652 ATPase-Plipid phosph 22.2 3.9E+02 0.0084 27.1 7.8 94 77-170 25-129 (1057)
123 TIGR00575 dnlj DNA ligase, NAD 22.1 35 0.00077 32.6 0.5 22 153-174 351-373 (652)
124 PF11457 DUF3021: Protein of u 22.0 3.2E+02 0.007 19.9 7.7 23 117-139 112-134 (136)
125 PF08605 Rad9_Rad53_bind: Fung 21.9 57 0.0012 24.8 1.5 16 153-168 55-70 (131)
126 PRK10839 16S rRNA pseudouridyl 21.5 1.8E+02 0.0039 23.5 4.6 36 130-167 15-50 (232)
127 PF12969 DUF3857: Domain of Un 21.0 94 0.002 23.4 2.6 21 147-167 79-99 (177)
128 PRK15122 magnesium-transportin 20.8 4.9E+02 0.011 25.9 8.1 67 111-180 113-181 (903)
129 PF05568 ASFV_J13L: African sw 20.5 79 0.0017 24.8 2.0 12 128-139 54-65 (189)
130 COG0474 MgtA Cation transport 20.2 1.2E+02 0.0027 30.1 3.8 22 148-169 161-182 (917)
131 COG1372 Intein/homing endonucl 20.0 89 0.0019 26.4 2.5 29 147-175 88-116 (420)
No 1
>PLN03190 aminophospholipid translocase; Provisional
Probab=100.00 E-value=2.8e-33 Score=273.13 Aligned_cols=143 Identities=39% Similarity=0.727 Sum_probs=135.6
Q ss_pred CCCCceEEEcCCCc----cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHH
Q psy5837 39 GKADHRVININAPQ----SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLIL 114 (181)
Q Consensus 39 ~~~~~r~i~~n~~~----~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~ 114 (181)
...+.|.|++|++. ..+|++|.|+|+||++|+|+|++||+||++++|+|||+++++|++|.+++.+++++++||++
T Consensus 66 ~~~~~r~i~~~~~~~~~~~~~f~~N~i~TsKYt~~tFlP~~L~eQF~r~aN~YFL~I~ilq~ip~~s~~~~~t~~~PL~~ 145 (1178)
T PLN03190 66 SDEDARLVYLNDPEKSNERFEFAGNSIRTAKYSVFSFLPRNLFEQFHRVAYIYFLVIAVLNQLPQLAVFGRGASILPLAF 145 (1178)
T ss_pred ccCCceEEEcCCCCcccccccCCCCeeeccccccHHHHHHHHHHHHHhhhhHHHHHHHHHHhCCCcccCCcchHHHHHHH
Confidence 34568999999862 34699999999999999999999999999999999999999999999999899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 115 IMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 115 vl~i~~i~~~~~d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
|++++++++++||++|+++|+++|++.++|+|+|.+++++|+||+|||||++++||.+|||+++|+|
T Consensus 146 vl~v~~ike~~Ed~~r~k~d~~~N~~~~~v~~~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~S 212 (1178)
T PLN03190 146 VLLVTAVKDAYEDWRRHRSDRIENNRLAWVLVDDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLST 212 (1178)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhcCcEEEEEECCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEec
Confidence 9999999999999999999999999999999999999999999999999999999999999999974
No 2
>KOG0206|consensus
Probab=99.97 E-value=4.4e-31 Score=254.01 Aligned_cols=142 Identities=48% Similarity=0.844 Sum_probs=134.4
Q ss_pred CCCCceEEEcCCCcc-----ccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHH
Q psy5837 39 GKADHRVININAPQS-----CKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLI 113 (181)
Q Consensus 39 ~~~~~r~i~~n~~~~-----~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~ 113 (181)
..+.+|+++.|.+.. .+|..|+|+|+||++++|+|++||+||++++|+|||++++++++| +++.+++++++||+
T Consensus 10 ~~~~~R~~~~n~~~~~~~~~~~~~~N~i~TtKYt~~tFlPk~l~eQf~r~aN~yFl~~~il~~ip-~~~~~~~~~~~pl~ 88 (1151)
T KOG0206|consen 10 RPGFSRVVYCNDPLPFEAPQRKYCDNRISTTKYTLFTFLPKNLFEQFHRVANLYFLFIAILQFIP-LSPFNPYTTLVPLL 88 (1151)
T ss_pred cCCCceEEeCCCCCcchhhhccccCCeeEEEeccchhhhHHHHHHHHHHHHHHHHHHHHHHHcCc-ccccCccceeecee
Confidence 456789999999733 489999999999999999999999999999999999999999999 88999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhccccceEEECCE-EEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 114 LIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGM-IYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 114 ~vl~i~~i~~~~~d~~~~k~d~~~n~~~~~VlR~g~-~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+|+.++++|+++||++|+++|+++|+.+|+|+|++. +.+..|++|+|||+|++..+|.+|||++||+|
T Consensus 89 ~vl~~t~iKd~~eD~rR~~~D~~iN~~~~~v~~~~~~~~~~~wk~~~vGd~v~v~~~~~~paD~llLss 157 (1151)
T KOG0206|consen 89 FVLGITAIKDAIEDYRRHKQDKEVNNRKVEVLRGDGCFVEKKWKDVRVGDIVRVEKDEFVPADLLLLSS 157 (1151)
T ss_pred eeehHHHHHHHHhhhhhhhccHHhhcceeEEecCCceeeeeccceeeeeeEEEeccCCccccceEEecC
Confidence 999999999999999999999999999999999643 89999999999999999999999999999986
No 3
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=99.97 E-value=1.6e-30 Score=252.60 Aligned_cols=126 Identities=51% Similarity=0.880 Sum_probs=122.5
Q ss_pred ccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy5837 56 FVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADG 135 (181)
Q Consensus 56 yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k~d~ 135 (181)
|++|.++|+||++|+|+|+.||+||++++|+|||+++++|++|++++.+++++++||+++++++++++++||++|+++|+
T Consensus 1 ~~~N~i~tskY~~~~flp~~l~~qf~~~~N~yfl~i~ilq~ip~~s~~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~ 80 (1057)
T TIGR01652 1 FCSNKISTTKYTVLTFLPKNLFEQFKRFANLYFLVVALLQQVPILSPTYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDK 80 (1057)
T ss_pred CCCCcccCccCcchhhhHHHHHHHHHHHhhHHHHHHHHHHcCCCcCCCCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 78999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred hhccccceEEEC-CEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 136 EINHRSVDVIRN-GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 136 ~~n~~~~~VlR~-g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
++|++.|+|+|+ |++++++|+||+|||||+|++||.||||+++|+|
T Consensus 81 ~~n~~~~~v~~~~~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~s 127 (1057)
T TIGR01652 81 EVNNRLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSS 127 (1057)
T ss_pred HHhCcEEEEECCCCcEEEeeeecccCCCEEEEcCCCcccceEEEEec
Confidence 999999999997 8999999999999999999999999999999974
No 4
>KOG0210|consensus
Probab=99.89 E-value=5.2e-23 Score=188.37 Aligned_cols=140 Identities=34% Similarity=0.550 Sum_probs=126.3
Q ss_pred CCceEEEcCC---CccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHH
Q psy5837 41 ADHRVININA---PQSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMV 117 (181)
Q Consensus 41 ~~~r~i~~n~---~~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~ 117 (181)
...|++.+.. ..+.+|.+|.+...||++++|+|..+++||+.+.|+|||+.++.|++|.+......+.+.|+.+|+.
T Consensus 61 l~~rt~~~~~~~~~~~~r~~pn~v~nqKyn~~tF~p~vl~~qF~~F~nlyfll~alsQ~ip~~~ig~l~ty~~pl~fvl~ 140 (1051)
T KOG0210|consen 61 LHGRTVNISFGPHYRRRRFPPNEVRNQKYNIFTFVPAVLFEQFKFFLNLYFLLVALSQLIPALKIGYLSTYWGPLGFVLT 140 (1051)
T ss_pred ccCceeecccCCCcccccCCCchhhhcccceEEeeHHHHHHHHHHHHHHHHHHHHHHhhCchheecchhhhhHHHHHHHH
Confidence 3456666654 3578899999999999999999999999999999999999999999988766667889999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhccccceEE-ECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 118 VSGIKEIIEDIKRHLADGEINHRSVDVI-RNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 118 i~~i~~~~~d~~~~k~d~~~n~~~~~Vl-R~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+++++++++|++|++.|++.|+.+.+++ |+|...+ ++++|.|||+|.+++|++||||+++|.+
T Consensus 141 itl~keavdd~~r~~rd~~~Nse~y~~ltr~~~~~~-~Ss~i~vGDvi~v~K~~RVPADmilLrT 204 (1051)
T KOG0210|consen 141 ITLIKEAVDDLKRRRRDRELNSEKYTKLTRDGTRRE-PSSDIKVGDVIIVHKDERVPADMILLRT 204 (1051)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhheeeccCCcccc-cccccccccEEEEecCCcCCcceEEEEc
Confidence 9999999999999999999999999988 6665555 9999999999999999999999999974
No 5
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=99.87 E-value=8.6e-22 Score=191.47 Aligned_cols=122 Identities=17% Similarity=0.165 Sum_probs=105.7
Q ss_pred ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5837 52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH 131 (181)
Q Consensus 52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~ 131 (181)
.+++||.|+++.++..++ ++.+++||.++++++++++++++++. +.+...+.++++++++++.+++||++..
T Consensus 35 rl~~~G~N~l~~~~~~s~---~~~~l~q~~~~~~~iL~~aails~~~-----~~~~~~~iIl~vv~in~~i~~~QE~~ae 106 (1053)
T TIGR01523 35 RLKEVGENRLEADSGIDA---KAMLLHQVCNAMCMVLIIAAAISFAM-----HDWIEGGVISAIIALNILIGFIQEYKAE 106 (1053)
T ss_pred HHHHcCCCCCCCCCCCCH---HHHHHHHHhCHHHHHHHHHHHHHHHH-----hhHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 367899999999887654 36789999999999999999999875 3445566777788899999999999998
Q ss_pred Hhhhhh---ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 132 LADGEI---NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 132 k~d~~~---n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
++.+++ ...+++|+|||++++|+++||||||||.|++||.||||++|+++
T Consensus 107 kal~aL~~l~~~~~~ViRdg~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi~~ 159 (1053)
T TIGR01523 107 KTMDSLKNLASPMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIET 159 (1053)
T ss_pred HHHHHHhccCCCceEEEeCCeeeecCHhhCCCCCEEEECCCCEeeccEEEEEe
Confidence 876554 45789999999999999999999999999999999999999975
No 6
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=99.84 E-value=1.2e-20 Score=182.97 Aligned_cols=126 Identities=16% Similarity=0.162 Sum_probs=106.0
Q ss_pred cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcc-cC-------CCCcchhhHHHHHHHHHHHHHHH
Q psy5837 53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPD-VS-------PTGRYTTLIPLILIMVVSGIKEI 124 (181)
Q Consensus 53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~-i~-------~~~~~~~~~~l~~vl~i~~i~~~ 124 (181)
+++||.|+++.++.+++ ++.|++||.++++++++++++++++.. +. ..+.+...++++++++++++.++
T Consensus 46 l~~~G~N~l~~~~~~~~---~~~~l~~~~~~~~~iL~~aa~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~i~~ 122 (997)
T TIGR01106 46 LARDGPNALTPPPTTPE---WVKFCRQLFGGFSMLLWIGAILCFLAYGIQASTEEEPQNDNLYLGVVLSAVVIITGCFSY 122 (997)
T ss_pred HHHhCCCCCCCCCCCCH---HHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 67899999998877654 367899999999999999998877642 11 01234456678888899999999
Q ss_pred HHHHHHHHhhhhhcc---ccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 125 IEDIKRHLADGEINH---RSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 125 ~~d~~~~k~d~~~n~---~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+|+++++++.+++++ .+++|+|||++++|+++||||||+|.|++||.||||++|+++
T Consensus 123 ~qe~ka~~~l~~l~~~~~~~~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~ 182 (997)
T TIGR01106 123 YQEAKSSKIMESFKNMVPQQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISA 182 (997)
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEc
Confidence 999999998887765 589999999999999999999999999999999999999974
No 7
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=99.83 E-value=2e-20 Score=180.46 Aligned_cols=125 Identities=18% Similarity=0.277 Sum_probs=94.6
Q ss_pred cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccC--------C-CCcchhhHHHHHHHHHHHHHH
Q psy5837 53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVS--------P-TGRYTTLIPLILIMVVSGIKE 123 (181)
Q Consensus 53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~--------~-~~~~~~~~~l~~vl~i~~i~~ 123 (181)
+++||+|+++.++.++++ +.+++||+++++++|+++++++++.++. + .+|+. .+.++++++++.+.+
T Consensus 70 ~~~yG~N~l~~~~~~s~~---~~~~~~f~~~~~~~l~~~ails~~~~~~~~~~~~~~~~~~~~~-~~~il~~v~~~~~i~ 145 (941)
T TIGR01517 70 EKVYGKNELPEKPPKSFL---QIVWAALSDQTLILLSVAAVVSLVLGLPEPGEGKADTETGWIE-GVAILVSVILVVLVT 145 (941)
T ss_pred HHHhCCCCCCCCCCCCHH---HHHHHHHhCHHHHHHHHHHHHHHHHhhcccccccCccccchHH-HHHHHHHHHHHhHHH
Confidence 567999999999887543 6789999999999999999999885421 1 12333 333333334444445
Q ss_pred HHHHHHHHHh----hhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 124 IIEDIKRHLA----DGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 124 ~~~d~~~~k~----d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
++++++..++ ++..++.+++|+|||++++|+++||||||||.|++||.||||++++++
T Consensus 146 ~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g 207 (941)
T TIGR01517 146 AVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISG 207 (941)
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEc
Confidence 5566555543 333456789999999999999999999999999999999999999974
No 8
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=99.83 E-value=2.9e-20 Score=178.37 Aligned_cols=122 Identities=13% Similarity=0.166 Sum_probs=101.5
Q ss_pred ccccccCCccccCcCcccchhhHHHHHHc-cchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Q psy5837 52 QSCKFVGNKISTAKYSLVTFFPCFLFEQF-RRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKR 130 (181)
Q Consensus 52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf-~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~ 130 (181)
.+++||.|+++.++.+++ ++.+++|| +++++++++++++++++.+ .|...+.++++++++++.+++||++.
T Consensus 33 r~~~~G~N~i~~~~~~s~---~~~~l~~~~~~~~~~~L~~aa~ls~~~g-----~~~~~~~i~~~i~~~~~i~~~qe~~a 104 (884)
T TIGR01522 33 RRAFHGWNEFDVEEDESL---WKKFLSQFVKNPLILLLIASAVISVFMG-----NIDDAVSITLAILIVVTVGFVQEYRS 104 (884)
T ss_pred HHHhcCCCcCCCCCCCCH---HHHHHHHHhhChHHHHHHHHHHHHHHHc-----chhhHHHHHhHHHHHHHHHHHHHHHH
Confidence 367899999998877654 36789999 9999999999999988753 33344445555667778899999988
Q ss_pred HHhhhhhc---cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 131 HLADGEIN---HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 131 ~k~d~~~n---~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
.++.++++ ..+++|+|||++++|+++||||||||.|++||.||||++|+++
T Consensus 105 ~~~l~~L~~l~~~~~~ViRdg~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g 158 (884)
T TIGR01522 105 EKSLEALNKLVPPECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEA 158 (884)
T ss_pred HHHHHHHhccCCCeeEEEECCEEEEEEHHHCccCCEEEecCCCEEeeeEEEEEc
Confidence 88766554 5689999999999999999999999999999999999999974
No 9
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=99.83 E-value=3.3e-20 Score=175.44 Aligned_cols=121 Identities=16% Similarity=0.199 Sum_probs=101.6
Q ss_pred ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5837 52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH 131 (181)
Q Consensus 52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~ 131 (181)
.+++||.|+++.++.++| +.|++||+++++++++++++++++.+ .+...+.++++++++++.+++||++..
T Consensus 10 r~~~~G~N~~~~~~~~~~----~~~~~~~~~~~~~lL~~aa~~s~~~~-----~~~~~~~i~~~~~i~~~i~~~qe~~a~ 80 (755)
T TIGR01647 10 RLAKYGPNELPEKKVSPL----LKFLGFFWNPLSWVMEAAAIIAIALE-----NWVDFVIILGLLLLNATIGFIEENKAG 80 (755)
T ss_pred HHHhcCCCCCCCCCCCHH----HHHHHHHhchHHHHHHHHHHHHHhhc-----chhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 367899999998555432 66889999999999999999998753 344455666677788888999999988
Q ss_pred Hhhhhh---ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 132 LADGEI---NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 132 k~d~~~---n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
++.+.+ ...+++|+|||++++|+.+||||||||.|++||.||||++++++
T Consensus 81 ~~~~~L~~~~~~~~~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~g 133 (755)
T TIGR01647 81 NAVEALKQSLAPKARVLRDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEG 133 (755)
T ss_pred HHHHHHHhhCCCeEEEEECCEEEEEEhhhCcCCCEEEECCCCEEeceEEEEec
Confidence 776554 45789999999999999999999999999999999999999974
No 10
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=99.83 E-value=5.5e-20 Score=176.69 Aligned_cols=121 Identities=17% Similarity=0.216 Sum_probs=103.9
Q ss_pred cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5837 53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHL 132 (181)
Q Consensus 53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k 132 (181)
+++||.|+++.++.+++ ++.|++||+++++++++++++++++. +.+...+.++++++++++.+++++++..+
T Consensus 77 ~~~~G~N~l~~~~~~s~---~~~~~~~~~~p~~~lL~~aa~ls~~~-----~~~~~a~~I~~iv~i~~~i~~~qe~ra~~ 148 (902)
T PRK10517 77 REQHGENELPAQKPLPW---WVHLWVCYRNPFNILLTILGAISYAT-----EDLFAAGVIALMVAISTLLNFIQEARSTK 148 (902)
T ss_pred HHhcCCCCCCCCCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHH-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999988755 37789999999999999999999874 34556666777888899999999999887
Q ss_pred hhhhh---ccccceEEEC------CEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 133 ADGEI---NHRSVDVIRN------GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 133 ~d~~~---n~~~~~VlR~------g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+.+++ ...+++|+|| |++++|+++||||||||.|++||.||||++|+++
T Consensus 149 ~~~~L~~l~~~~a~ViR~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~IPaDg~li~g 206 (902)
T PRK10517 149 AADALKAMVSNTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQA 206 (902)
T ss_pred HHHHHHhhCCCeEEEEECCccCCCCeEEEEEHHhCCCCCEEEECCCCEEeeeEEEEEc
Confidence 65544 4578999999 7899999999999999999999999999999974
No 11
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=99.82 E-value=1e-19 Score=174.32 Aligned_cols=122 Identities=17% Similarity=0.249 Sum_probs=103.7
Q ss_pred ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5837 52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH 131 (181)
Q Consensus 52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~ 131 (181)
.+++||.|+++.++.+++ ++.+++||+++++++++++++++++. +.+...+.++++++++++.+++++++..
T Consensus 42 r~~~~G~N~l~~~~~~~~---~~~~~~~~~~p~~~iL~~~a~ls~~~-----~~~~~~~iI~~iv~~~~~i~~~~e~~a~ 113 (867)
T TIGR01524 42 RLAEFGPNQTVEEKKVPN---LRLLIRAFNNPFIYILAMLMGVSYLT-----DDLEATVIIALMVLASGLLGFIQESRAE 113 (867)
T ss_pred HHHhcCCCcCCCCCCCCH---HHHHHHHHhhHHHHHHHHHHHHHHHH-----hhHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 367899999999887643 37789999999999999999999874 3455566677778889899999999887
Q ss_pred Hhhhh---hccccceEEE------CCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 132 LADGE---INHRSVDVIR------NGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 132 k~d~~---~n~~~~~VlR------~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
++.++ +...+++|+| ||++++|+++||||||||.+++||.||||++++++
T Consensus 114 ka~~~L~~l~~~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~g 172 (867)
T TIGR01524 114 RAAYALKNMVKNTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVISA 172 (867)
T ss_pred HHHHHHhhhccCeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEec
Confidence 76544 4457899999 99999999999999999999999999999999974
No 12
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=99.81 E-value=1.5e-19 Score=173.69 Aligned_cols=127 Identities=17% Similarity=0.292 Sum_probs=104.8
Q ss_pred ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccC-C-----CCcchhhHHHHHHHHHHHHHHHH
Q psy5837 52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVS-P-----TGRYTTLIPLILIMVVSGIKEII 125 (181)
Q Consensus 52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~-~-----~~~~~~~~~l~~vl~i~~i~~~~ 125 (181)
.+++||+|+++.++.+++ ++.|++||+++++++|+++++++++.+.. + .+.+...+.++++++++++.+++
T Consensus 54 rl~~~G~N~l~~~~~~~~---~~~~l~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~iI~~~v~l~~~i~~~ 130 (903)
T PRK15122 54 RLQRYGPNEVAHEKPPHA---LVQLLQAFNNPFIYVLMVLAAISFFTDYWLPLRRGEETDLTGVIIILTMVLLSGLLRFW 130 (903)
T ss_pred HHHhcCCCCCCCCCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhccCCccccHhHHHHHHHHHHHHHHHHHH
Confidence 367899999999887654 26789999999999999999999876421 0 12345566677788889999999
Q ss_pred HHHHHHHhhhhh---ccccceEEEC------CEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 126 EDIKRHLADGEI---NHRSVDVIRN------GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 126 ~d~~~~k~d~~~---n~~~~~VlR~------g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
|+++..++.+++ ...+++|+|| |++++|+++||||||||.|++||.||||++|+++
T Consensus 131 qe~~a~~a~~~L~~l~~~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g 195 (903)
T PRK15122 131 QEFRSNKAAEALKAMVRTTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIES 195 (903)
T ss_pred HHHHHHHHHHHHHhccCCceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc
Confidence 999988776554 4578999999 4899999999999999999999999999999974
No 13
>KOG0202|consensus
Probab=99.81 E-value=5.8e-21 Score=177.84 Aligned_cols=122 Identities=18% Similarity=0.260 Sum_probs=104.2
Q ss_pred ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5837 52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRH 131 (181)
Q Consensus 52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~ 131 (181)
.+++||.|+++.....++ |+.+++||.+++..+||..|+++++.. ++...+.+.++++++++.+++|||+..
T Consensus 32 r~~~yG~Nel~~ee~~~~---wk~vLeQF~n~Li~iLL~sA~ISfvl~-----~~~e~~vI~liiv~nvtVG~~QEy~aE 103 (972)
T KOG0202|consen 32 RRKKYGENELPAEEGESL---WKLVLEQFDNPLILILLLSAAISFVLA-----DFDEPFVITLIIVINVTVGFVQEYNAE 103 (972)
T ss_pred HHHhcCCccCccccCCcH---HHHHHHHHHhHHHHHHHHHHHHHHHHH-----hcccceeeeeeeeeeeeeeeeeehhhH
Confidence 367899999999888765 378999999999999999999999853 333444455566678888999999999
Q ss_pred Hhhhhhc---cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 132 LADGEIN---HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 132 k~d~~~n---~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
|+.++++ .+.|+|+|+|+.+.++++||||||||.|+-||+||||+||++.
T Consensus 104 kalEaLk~l~p~~~~V~R~gk~~~i~A~eLVPGDiV~l~vGDkVPADlRl~e~ 156 (972)
T KOG0202|consen 104 KALEALKELVPPMAHVLRSGKLQHILARELVPGDIVELKVGDKIPADLRLIEA 156 (972)
T ss_pred HHHHHHHhcCCccceEEecCcccceehhccCCCCEEEEecCCccccceeEEee
Confidence 9876555 5789999999999999999999999999999999999999873
No 14
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.8e-19 Score=173.36 Aligned_cols=124 Identities=22% Similarity=0.305 Sum_probs=101.4
Q ss_pred cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccC-CCCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy5837 53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVS-PTGRYTTLIPLILIMVVSGIKEIIEDIKRH 131 (181)
Q Consensus 53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~-~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~ 131 (181)
+++||.|++...+...+ ++.++.||.++++++|+++++++++.+.. +.. .....++.+++++++..++|+++..
T Consensus 54 ~~~~G~N~~~~~~~~~~---~~~fl~~f~~~~~~iL~~~a~~s~~~~~~~~~~--~~~~~I~~~i~~n~~~g~~qe~~a~ 128 (917)
T COG0474 54 LKKYGPNELPEEKKRSL---LKKFLRQFKDPFIILLLVAALLSAFVGDWVDAG--VDAIVILLVVVINALLGFVQEYRAE 128 (917)
T ss_pred HhhcCCccccccccCcH---HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccC--cceeeehHHHHHHHHHHHHHHHHHH
Confidence 56799999998877654 26688999999999999999998875321 111 3334555567788888999999987
Q ss_pred Hh---hhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 132 LA---DGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 132 k~---d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
++ .+++++.+++|+|||++++|+|+||||||||+|++||.||||++||++
T Consensus 129 ~~l~~lk~~~~~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~ 181 (917)
T COG0474 129 KALEALKKMSSPKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLES 181 (917)
T ss_pred HHHHHHHhhccCceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEe
Confidence 65 456667899999999999999999999999999999999999999985
No 15
>KOG0204|consensus
Probab=99.76 E-value=3.3e-19 Score=166.32 Aligned_cols=126 Identities=19% Similarity=0.239 Sum_probs=107.1
Q ss_pred cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccC----CCCcchhhHH---HHHHHHHHHHHHHH
Q psy5837 53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVS----PTGRYTTLIP---LILIMVVSGIKEII 125 (181)
Q Consensus 53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~----~~~~~~~~~~---l~~vl~i~~i~~~~ 125 (181)
++-||.|.++.++.+.+ +.++||.|++...++|+++|++++..++. ..+|+....+ +++|++++|+.++-
T Consensus 129 r~~fG~N~~p~k~~K~F---l~fvweA~qD~TLiIL~vaAvvSl~lgi~~~g~~~GW~eG~aI~~sV~~VV~VtA~nDy~ 205 (1034)
T KOG0204|consen 129 RKIFGSNTYPEKPPKGF---LRFVWEALQDVTLIILMVAAVVSLGLGIYTPGIEDGWIEGVAILLSVILVVLVTAVNDYR 205 (1034)
T ss_pred HHhcCCCCCCCCCCccH---HHHHHHHhccchHHHHHHHHHHHHhhhhccCCCCcccccchhheeeEEEEEEEeecchhH
Confidence 56799999999988754 26799999999999999999999987664 2356654333 34566788888888
Q ss_pred HHHHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 126 EDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 126 ~d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
|+.|-++.+++..+.++.|+|||+.++|+..|||||||+.|+.||++|||++++++
T Consensus 206 qe~QF~~L~~~k~~~k~~ViR~G~r~~isI~diVVGDIv~lk~GDqvPADGvli~g 261 (1034)
T KOG0204|consen 206 QELQFRKLQKEKRNIKFQVIRGGRRQQISIYDLVVGDIVQLKIGDQVPADGVLIQG 261 (1034)
T ss_pred HhhhhhhhhhhhhceEEEEEECCEEEEEEEeeeeeccEEEeecCCccccceEEEec
Confidence 88888888888888999999999999999999999999999999999999999975
No 16
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=99.76 E-value=6e-18 Score=164.94 Aligned_cols=120 Identities=23% Similarity=0.222 Sum_probs=94.9
Q ss_pred cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5837 53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHL 132 (181)
Q Consensus 53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k 132 (181)
+++||.|++..++.++ ++.++++|.+|+++++++++++.++ .+.+...+.++++++++.+..++++++..+
T Consensus 149 ~~~yG~N~i~~~~~s~----~~ll~~~~~~p~~i~~i~~~~l~~~-----~~~~~~~~~i~~i~~~~~~~~~~~~~k~~~ 219 (1054)
T TIGR01657 149 KAKYGKNEIEIPVPSF----LELLKEEVLHPFYVFQVFSVILWLL-----DEYYYYSLCIVFMSSTSISLSVYQIRKQMQ 219 (1054)
T ss_pred HHhcCCCeeecCCCCH----HHHHHHHHhchHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999876433 3778999999998877776555443 233445555566677778888888887776
Q ss_pred hhhhhc--cccceEEECCEEEEEecccCccCcEEEec--CCCEecCcEEEeeC
Q psy5837 133 ADGEIN--HRSVDVIRNGMIYVEQWKDLKVGDIVKVY--NNSFFPGDLMVLST 181 (181)
Q Consensus 133 ~d~~~n--~~~~~VlR~g~~~~I~~~dLvvGDIV~L~--~Gd~vPAD~~LL~S 181 (181)
+.+++. ...++|+|||++++|+++||||||||.|+ +||.||||++|+++
T Consensus 220 ~L~~~~~~~~~v~V~Rdg~~~~I~s~eLvpGDiv~l~~~~g~~iPaD~~ll~g 272 (1054)
T TIGR01657 220 RLRDMVHKPQSVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSG 272 (1054)
T ss_pred HHHHhhcCCeeEEEEECCEEEEEEcccCCCCCEEEEecCCCCEecceEEEEeC
Confidence 665554 45899999999999999999999999999 99999999999974
No 17
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=99.73 E-value=2.3e-17 Score=159.04 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=88.6
Q ss_pred HHHHccchHHHHHHHHHHHHHhcccCC-----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc---cccceEEEC
Q psy5837 76 LFEQFRRYSNIFFLFIALLQQIPDVSP-----TGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEIN---HRSVDVIRN 147 (181)
Q Consensus 76 l~~qf~~~~ni~lL~iail~~i~~i~~-----~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k~d~~~n---~~~~~VlR~ 147 (181)
+++||+++++++|+++++++++.++.. .+.+...+.++++++++++.+++|+++..++.+.++ ..+++|+||
T Consensus 1 ~~~~f~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~Il~vi~~~~~i~~~qe~~a~~~~~~L~~~~~~~~~ViRd 80 (917)
T TIGR01116 1 VLEQFEDLLVRILLLAACVSFVLAWFEEGEETVTAFVEPFVILLILVANAIVGVWQERNAEKAIEALKEYESEHAKVLRD 80 (917)
T ss_pred ChHHHhCHHHHHHHHHHHHHHHHhcccccccccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEC
Confidence 368999999999999999999875432 123444555666777888889999999888766554 568999999
Q ss_pred CEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 148 GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 148 g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
|++++|+++||||||||.|++||.||||++|+++
T Consensus 81 g~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~ 114 (917)
T TIGR01116 81 GRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSL 114 (917)
T ss_pred CEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEe
Confidence 9999999999999999999999999999999974
No 18
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=99.56 E-value=1.9e-14 Score=117.26 Aligned_cols=69 Identities=25% Similarity=0.416 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhcc---cc-ceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 112 LILIMVVSGIKEIIEDIKRHLADGEINH---RS-VDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 112 l~~vl~i~~i~~~~~d~~~~k~d~~~n~---~~-~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
++++++++.+.++++++++++..+++++ .+ ++|+|||++++++|+||+|||||+|++||.+|||+++++
T Consensus 2 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~ 74 (230)
T PF00122_consen 2 ILFLILLSNIIEIWQEYRSKKQLKKLNNLNPQKKVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLE 74 (230)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSEEEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEE
T ss_pred EEEEhHHHHHHHHHHHHHHHHHHHHHhccCCCccEEEEeccccccchHhhccceeeeecccccccccCcccee
Confidence 4566778888899999999888877654 34 899999999999999999999999999999999999997
No 19
>KOG0205|consensus
Probab=99.53 E-value=3.5e-15 Score=136.78 Aligned_cols=125 Identities=15% Similarity=0.144 Sum_probs=94.0
Q ss_pred ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCC--CCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy5837 52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSP--TGRYTTLIPLILIMVVSGIKEIIEDIK 129 (181)
Q Consensus 52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~--~~~~~~~~~l~~vl~i~~i~~~~~d~~ 129 (181)
.+++||.|++...|.+.+ +.|+.-|-+|..+..=.+|++.....-.. ...|..++.++..+++++...|+||++
T Consensus 45 Rlk~fG~NkleEkken~~----lKFl~Fm~~PlswVMEaAAimA~~Lang~~~~~DW~DF~gI~~LLliNsti~FveE~n 120 (942)
T KOG0205|consen 45 RLKIFGPNKLEEKKESKF----LKFLGFMWNPLSWVMEAAAIMAIGLANGGGRPPDWQDFVGICCLLLINSTISFIEENN 120 (942)
T ss_pred HHHhhCchhhhhhhhhHH----HHHHHHHhchHHHHHHHHHHHHHHHhcCCCCCcchhhhhhhheeeeecceeeeeeccc
Confidence 367899999999888754 23445555666655555666654432110 113456666777788999999999998
Q ss_pred HHHhhhhhc---cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 130 RHLADGEIN---HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 130 ~~k~d~~~n---~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
.-.+-.++. ..+++|+|||+|.++.+.+||||||+.++.||.+|||++||+
T Consensus 121 AGn~aa~L~a~LA~KakVlRDGkw~E~eAs~lVPGDIlsik~GdIiPaDaRLl~ 174 (942)
T KOG0205|consen 121 AGNAAAALMAGLAPKAKVLRDGKWSEQEASILVPGDILSIKLGDIIPADARLLE 174 (942)
T ss_pred cchHHHHHHhccCcccEEeecCeeeeeeccccccCceeeeccCCEecCccceec
Confidence 776543333 478999999999999999999999999999999999999986
No 20
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=99.43 E-value=8e-13 Score=123.90 Aligned_cols=104 Identities=16% Similarity=0.147 Sum_probs=74.9
Q ss_pred HHccchHHHHHHHHHHHHHhcccCCC------Ccchh---hHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc----ccceE
Q psy5837 78 EQFRRYSNIFFLFIALLQQIPDVSPT------GRYTT---LIPLILIMVVSGIKEIIEDIKRHLADGEINH----RSVDV 144 (181)
Q Consensus 78 ~qf~~~~ni~lL~iail~~i~~i~~~------~~~~~---~~~l~~vl~i~~i~~~~~d~~~~k~d~~~n~----~~~~V 144 (181)
.||++++.+++++.++++++.++.+. .+... .+.+++.+++....+.+++++..++.+.+.+ .+++|
T Consensus 29 ~~~~~p~~~vl~~~a~ls~~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~~~~~e~~ae~ra~~~~~sL~~l~~~~~a~v 108 (679)
T PRK01122 29 VQIRNPVMFVVEVGSILTTILTIAPLLFQSGGPAGFNLAITLWLWFTVLFANFAEALAEGRGKAQADSLRGAKKDTFARK 108 (679)
T ss_pred HHhhChHHHHHHHHHHHHHHHHhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 58899999999999999987643211 11111 2233333444445556666666655444433 36999
Q ss_pred EECCE-EEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 145 IRNGM-IYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 145 lR~g~-~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+|+|. +++|+.+||++||+|.+++||.||||++++++
T Consensus 109 ir~g~~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~vieG 146 (679)
T PRK01122 109 LREPGAAEEVPATELRKGDIVLVEAGEIIPADGEVIEG 146 (679)
T ss_pred EECCCEEEEEEHHHcCCCCEEEEcCCCEEEEEEEEEEc
Confidence 99987 89999999999999999999999999999874
No 21
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=99.40 E-value=1.4e-12 Score=122.09 Aligned_cols=104 Identities=14% Similarity=0.163 Sum_probs=70.7
Q ss_pred HHccchHHHHHHHHHHHHHhcccCCC-----Cc-chhhHHHHHHHHHHHHHHHHH----HHHHHHhhhhhcc---c-cce
Q psy5837 78 EQFRRYSNIFFLFIALLQQIPDVSPT-----GR-YTTLIPLILIMVVSGIKEIIE----DIKRHLADGEINH---R-SVD 143 (181)
Q Consensus 78 ~qf~~~~ni~lL~iail~~i~~i~~~-----~~-~~~~~~l~~vl~i~~i~~~~~----d~~~~k~d~~~n~---~-~~~ 143 (181)
.+|++|+.+++++.++++++....+. ++ ....+.++++++++++...++ ++|..++.+.+.+ . +++
T Consensus 28 ~~~~~p~~~il~~aa~ls~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~g~~~E~~ae~ra~~~~~~L~~~~~~~~a~ 107 (673)
T PRK14010 28 YMIKNPIMFVVEVGMLLALGLTIYPDLFHQESVSRLYVFSIFIILLLTLVFANFSEALAEGRGKAQANALRQTQTEMKAR 107 (673)
T ss_pred HHHHChHHHHHHHHHHHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 46789999999999999886532211 11 112233344445555555444 3444443333332 2 465
Q ss_pred -EEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 144 -VIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 144 -VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
|.|||++++|+.++|+|||+|.+++||.||||++++++
T Consensus 108 ~v~rdg~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG 146 (673)
T PRK14010 108 RIKQDGSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKG 146 (673)
T ss_pred EEEeCCEEEEEEHHHcCCCCEEEECCCCcccCCeEEEEc
Confidence 67999999999999999999999999999999999974
No 22
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=99.36 E-value=5.4e-12 Score=118.25 Aligned_cols=104 Identities=19% Similarity=0.270 Sum_probs=74.5
Q ss_pred HHccchHHHHHHHHHHHHHhcccCC-------C--Ccchhh--HHHHHHHHHHHHHHHHHHHHHHHhhhhhcc---c-cc
Q psy5837 78 EQFRRYSNIFFLFIALLQQIPDVSP-------T--GRYTTL--IPLILIMVVSGIKEIIEDIKRHLADGEINH---R-SV 142 (181)
Q Consensus 78 ~qf~~~~ni~lL~iail~~i~~i~~-------~--~~~~~~--~~l~~vl~i~~i~~~~~d~~~~k~d~~~n~---~-~~ 142 (181)
.||++++.+++++.++++++..+.+ . +|+... +.+++.+++.-..+.+++++..++.+.+++ . .+
T Consensus 28 ~~~~~p~~~il~~~a~is~~l~~~~~~~~~~~~~~~~~~~~i~~~l~~~vl~g~~~e~~ae~ra~~~~~~L~~~~~~~~a 107 (675)
T TIGR01497 28 AQWRNPVMFIVWVGSLLTTCITIAPASFGMPGNNLALFNAIITGILFITVLFANFAEAVAEGRGKAQADSLKGTKKTTFA 107 (675)
T ss_pred HHhhChHHHHHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceE
Confidence 5789999999999999988754321 1 133222 223333444545566666666665555443 2 47
Q ss_pred eEEE-CCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 143 DVIR-NGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 143 ~VlR-~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+|+| ||++++|+.+||+|||+|.+++||.||||++++++
T Consensus 108 ~vlr~dg~~~~V~~~~L~~GDiV~V~~Gd~IPaDG~vieG 147 (675)
T TIGR01497 108 KLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEG 147 (675)
T ss_pred EEEeeCCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc
Confidence 8885 89999999999999999999999999999999863
No 23
>KOG0203|consensus
Probab=99.32 E-value=4.1e-13 Score=125.90 Aligned_cols=126 Identities=20% Similarity=0.185 Sum_probs=99.0
Q ss_pred cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhccc---CC-----CCcchhhHHHHHHHHHHHHHHH
Q psy5837 53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDV---SP-----TGRYTTLIPLILIMVVSGIKEI 124 (181)
Q Consensus 53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i---~~-----~~~~~~~~~l~~vl~i~~i~~~ 124 (181)
..+.|+|.++++|.++- |..+..|+...+.+.+++.++++++... +. .......+.|..+++++.+..+
T Consensus 68 L~rdG~NaL~Ppk~t~~---wikf~kq~f~~~~ill~~~a~l~~~~y~~~~s~~~~~~~~nly~giiL~~vv~vtg~~~~ 144 (1019)
T KOG0203|consen 68 LARDGPNALTPPKTTPE---WIKFLRQLFGGFSILLWIGAILCFVAYGIQASTEDDPSDDNLYLGIVLAAVVIVTGLFSY 144 (1019)
T ss_pred hccCCCCCCCCCCCChH---HHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcccCCCCCCcceEEEEEEEEEEEEEecCCC
Confidence 57799999999999873 2557899999999988898888886321 11 1112334556667778888888
Q ss_pred HHHHHHHHhh---hhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 125 IEDIKRHLAD---GEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 125 ~~d~~~~k~d---~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+|+.+..+-. +.+-.+.|+|+|||..+.+..+||||||+|.++-||+||||++++++
T Consensus 145 ~qe~ks~~im~sF~~l~P~~~~ViRdg~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~ 204 (1019)
T KOG0203|consen 145 YQEAKSSKIMDSFKNLVPQQALVIRDGEKMTINAEELVVGDLVEVKGGDRVPADIRIISA 204 (1019)
T ss_pred ccchhhHHHHHHHhccchhhheeeecceeEEechhhcccccceeeccCCcccceeEEEEe
Confidence 8887655533 34445789999999999999999999999999999999999999874
No 24
>KOG0208|consensus
Probab=99.26 E-value=5.2e-11 Score=113.36 Aligned_cols=120 Identities=22% Similarity=0.244 Sum_probs=91.0
Q ss_pred cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5837 53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHL 132 (181)
Q Consensus 53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k 132 (181)
+.-||+|.+.-+..+.+ ..|+++--.|+.++-.+..++ |.. .+.+.+...++++.+.+++.+.+|..+..+
T Consensus 170 ~~iyG~N~i~l~ik~i~----~iLv~EvL~PfYlFQ~fSv~l-W~~----d~Y~~YA~cI~iisv~Si~~sv~e~r~qs~ 240 (1140)
T KOG0208|consen 170 RIIYGRNVISLPIKSIS----QILVKEVLNPFYLFQAFSVAL-WLA----DSYYYYAFCIVIISVYSIVLSVYETRKQSI 240 (1140)
T ss_pred HhhcCCceeeeecccHH----HHHHHhccchHHHHHhHHhhh-hhc----ccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999988764 567777777775543333333 221 234455666666777888888888777666
Q ss_pred hhhhhcc--ccceEEECCEEEEEecccCccCcEEEecC-CCEecCcEEEeeC
Q psy5837 133 ADGEINH--RSVDVIRNGMIYVEQWKDLKVGDIVKVYN-NSFFPGDLMVLST 181 (181)
Q Consensus 133 ~d~~~n~--~~~~VlR~g~~~~I~~~dLvvGDIV~L~~-Gd~vPAD~~LL~S 181 (181)
..+.+-. ..|+|+|+|.|++|.++|||||||+.+.. |-..|||++|+++
T Consensus 241 rlr~mv~~~~~V~V~R~g~~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g 292 (1140)
T KOG0208|consen 241 RLRSMVKFTCPVTVIRDGFWETVDSSELVPGDILYIPPPGKIMPCDALLISG 292 (1140)
T ss_pred HHHHHhcCCceEEEEECCEEEEEeccccccccEEEECCCCeEeecceEEEeC
Confidence 6666544 36899999999999999999999999999 9999999999864
No 25
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=99.23 E-value=5e-11 Score=109.21 Aligned_cols=76 Identities=26% Similarity=0.277 Sum_probs=56.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhh---hccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 106 YTTLIPLILIMVVSGIKEIIEDIKRHLADGE---INHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 106 ~~~~~~l~~vl~i~~i~~~~~d~~~~k~d~~---~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
|.....+++++++....+.+++++..+..+. ++..+++|+|||+++++++++|+|||+|.+++||.||||+++++.
T Consensus 18 ~~~~~~i~~~~~~~~~l~~~~~~~a~~~l~~l~~~~~~~~~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g 96 (536)
T TIGR01512 18 YLEGALLLLLFSIGETLEEYASGRARRALKALMELAPDTARVLRGGSLEEVAVEELKVGDVVVVKPGERVPVDGVVLSG 96 (536)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCEEEEEEHHHCCCCCEEEEcCCCEeecceEEEeC
Confidence 3333444445555555555555554444333 345789999999999999999999999999999999999999863
No 26
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=99.17 E-value=1.3e-10 Score=106.88 Aligned_cols=76 Identities=20% Similarity=0.152 Sum_probs=53.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHhhhhh---ccccceEEECC-EEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 106 YTTLIPLILIMVVSGIKEIIEDIKRHLADGEI---NHRSVDVIRNG-MIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 106 ~~~~~~l~~vl~i~~i~~~~~d~~~~k~d~~~---n~~~~~VlR~g-~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
|.....+++++++....+.+++++..+..+.+ +...++|+|+| ++++++++||+|||+|.+++||.||||+++++.
T Consensus 18 ~~~~~~i~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~~~v~r~~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g 97 (556)
T TIGR01525 18 VLEGALLLFLFLLGETLEERAKGRASDALSALLALAPSTARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVVISG 97 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEeccceEEEec
Confidence 33444444444444444444444333332222 34679999995 999999999999999999999999999999863
No 27
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=99.12 E-value=1.7e-10 Score=104.54 Aligned_cols=55 Identities=40% Similarity=0.448 Sum_probs=46.0
Q ss_pred HHHHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 126 EDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 126 ~d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
++..+...++.++..+++|+|+| +++|++++|+|||+|.+++||.||||++++++
T Consensus 21 ~~~~~~l~~~~~~~~~~~v~r~g-~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g 75 (499)
T TIGR01494 21 EDAIRSLKDLLVNPETVTVLRNG-WKEIPASDLVPGDIVLVKSGEIVPADGVLLSG 75 (499)
T ss_pred HHHHHHHhhccCCCCeEEEEECC-eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEc
Confidence 33333334444777899999999 99999999999999999999999999999974
No 28
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=99.04 E-value=1.5e-09 Score=103.15 Aligned_cols=66 Identities=23% Similarity=0.268 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh------ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 116 MVVSGIKEIIEDIKRHLADGEI------NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 116 l~i~~i~~~~~d~~~~k~d~~~------n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+++..+.+++|++.++|+.+.+ ...+++|+|||++++++.++|+|||+|.+++||.||||+++++.
T Consensus 213 ~~l~~~g~~le~~~~~ra~~~~~~L~~l~p~~a~vir~g~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g 284 (741)
T PRK11033 213 LLLFLIGERLEGYAASRARRGVSALMALVPETATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLSP 284 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEecceEEEEC
Confidence 3344555677777777665543 34679999999999999999999999999999999999999863
No 29
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=98.88 E-value=2.1e-08 Score=92.64 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHHHhhhhh------ccccceEEEC-CEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 118 VSGIKEIIEDIKRHLADGEI------NHRSVDVIRN-GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 118 i~~i~~~~~d~~~~k~d~~~------n~~~~~VlR~-g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+..+..++|++.++|+.+.+ ...+++++|+ |.+++|+.++|+|||+|.+++||.||||+++++.
T Consensus 63 ~~~~g~~le~~~~~~a~~~~~~L~~~~p~~a~~~~~~~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g 133 (562)
T TIGR01511 63 FILLGRWLEMLAKGRASDALSKLAKLQPSTATLLTKDGSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEG 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEecCceEEEEC
Confidence 33444677777666655433 2357888885 7779999999999999999999999999999863
No 30
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.78 E-value=1.9e-08 Score=96.69 Aligned_cols=65 Identities=11% Similarity=0.155 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhc------cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 116 MVVSGIKEIIEDIKRHLADGEIN------HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 116 l~i~~i~~~~~d~~~~k~d~~~n------~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
+++..+-.++|++.+.|+.+.++ ..+++|+|+|.+++|+.++|+|||+|.+++||.||||+++++
T Consensus 293 ~~~~~~g~~le~~~~~~~~~~~~~L~~l~p~~a~~~~~~~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~ 363 (834)
T PRK10671 293 IGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTDEGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQ 363 (834)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCcEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEE
Confidence 33444557788877777665443 367899999999999999999999999999999999999986
No 31
>KOG0209|consensus
Probab=98.69 E-value=5.8e-08 Score=91.80 Aligned_cols=115 Identities=20% Similarity=0.233 Sum_probs=81.5
Q ss_pred ccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5837 54 CKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLA 133 (181)
Q Consensus 54 ~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k~ 133 (181)
.+||+|+..-.-.+.. ..|.|.-..|+.++-.++..+.+.- ..||.++..|+.++.+-+.. . +||.+.
T Consensus 174 ~~~G~N~fdi~vPtF~----eLFkE~A~aPfFVFQVFcvgLWCLD----eyWYySlFtLfMli~fE~tl-V---~Qrm~~ 241 (1160)
T KOG0209|consen 174 HKYGKNKFDIVVPTFS----ELFKEHAVAPFFVFQVFCVGLWCLD----EYWYYSLFTLFMLIAFEATL-V---KQRMRT 241 (1160)
T ss_pred HHhcCCccccCCccHH----HHHHHhccCceeeHhHHhHHHHHhH----HHHHHHHHHHHHHHHHHHHH-H---HHHHHH
Confidence 4599999887766532 4566778888877666777666642 35777776666554443332 1 333343
Q ss_pred hh---hhc--cccceEEECCEEEEEecccCccCcEEEecC---CCEecCcEEEee
Q psy5837 134 DG---EIN--HRSVDVIRNGMIYVEQWKDLKVGDIVKVYN---NSFFPGDLMVLS 180 (181)
Q Consensus 134 d~---~~n--~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~---Gd~vPAD~~LL~ 180 (181)
.. .+. ...+.|+|+++|+.+..+||.|||+|.+.. ..-||||++||.
T Consensus 242 lse~R~Mg~kpy~I~v~R~kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~ 296 (1160)
T KOG0209|consen 242 LSEFRTMGNKPYTINVYRNKKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLR 296 (1160)
T ss_pred HHHHHhcCCCceEEEEEecCcceeccccccCCCceEEeccCcccCcCCceEEEEe
Confidence 33 332 356899999999999999999999999988 567999999985
No 32
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.50 E-value=5.8e-07 Score=85.13 Aligned_cols=66 Identities=24% Similarity=0.293 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhh------ccccceEEE-CCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 115 IMVVSGIKEIIEDIKRHLADGEI------NHRSVDVIR-NGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 115 vl~i~~i~~~~~d~~~~k~d~~~------n~~~~~VlR-~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
++++-.+-+++|++.+.|+.+.+ ...++++++ ||+.++++.+||+|||+|.+++||+||+|+++++
T Consensus 180 ii~l~~~G~~LE~~a~~ra~~ai~~L~~l~p~~A~~~~~~~~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~ 252 (713)
T COG2217 180 LIFLFLLGRYLEARAKGRARRAIRALLDLAPKTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVS 252 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCEEEEEecCCcEEEEEHHHCCCCCEEEECCCCEecCCeEEEe
Confidence 44455566788888877765543 345787776 5668999999999999999999999999999986
No 33
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=98.02 E-value=5e-06 Score=54.99 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=37.3
Q ss_pred ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhc
Q psy5837 52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIP 98 (181)
Q Consensus 52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~ 98 (181)
.+++||.|+++.++.+++ ++.+++||.++++++++++++++++.
T Consensus 19 r~~~~G~N~l~~~~~~s~---~~~~l~~~~~p~~~iL~~~a~is~~~ 62 (64)
T smart00831 19 RLERYGPNELPPPKKRSP---LLRFLRQFHNPLIYILLAAAVLSALL 62 (64)
T ss_pred HHHHhCCCCCCCCCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 467899999999986654 36789999999999999999998864
No 34
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=97.97 E-value=6.8e-06 Score=55.37 Aligned_cols=41 Identities=22% Similarity=0.292 Sum_probs=34.7
Q ss_pred ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHH
Q psy5837 52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQ 95 (181)
Q Consensus 52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~ 95 (181)
.+++||.|.++..+..++ ++.+++||.++++++++++++++
T Consensus 29 r~~~~G~N~l~~~~~~s~---~~~~~~~f~~~~~~lL~~aailS 69 (69)
T PF00690_consen 29 RRKKYGPNELPEPKKKSL---WRIFLKQFKNPFIILLLIAAILS 69 (69)
T ss_dssp HHHHHSSSSTTTTTSSSH---HHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHhcccccccccccCcH---HHHHHHHHHhHHHHHHHHHHHHC
Confidence 367899999988777765 37799999999999999999875
No 35
>KOG0207|consensus
Probab=97.75 E-value=0.00012 Score=70.29 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhhhh------hccccceEEECCE-EEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 119 SGIKEIIEDIKRHLADGE------INHRSVDVIRNGM-IYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 119 ~~i~~~~~d~~~~k~d~~------~n~~~~~VlR~g~-~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
.++..++|...++|+... +...++.++.+|+ .++|+...|.+||+|++.+|++||+|+++++
T Consensus 351 i~lgr~LE~~Ak~kts~alskLmsl~p~~a~ii~~g~~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~ 419 (951)
T KOG0207|consen 351 ITLGRWLESLAKGKTSEALSKLMSLAPSKATIIEDGSEEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVD 419 (951)
T ss_pred HHHHHHHHHHhhccchHHHHHHhhcCcccceEeecCCcceEeeeeeeccCCEEEECCCCccccccEEEe
Confidence 334466777667765443 3357899999996 8999999999999999999999999999985
No 36
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=97.74 E-value=2.5e-05 Score=71.26 Aligned_cols=69 Identities=25% Similarity=0.364 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhh--hh-ccccceEEEC-CEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 112 LILIMVVSGIKEIIEDIK-RHLADG--EI-NHRSVDVIRN-GMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 112 l~~vl~i~~i~~~~~d~~-~~k~d~--~~-n~~~~~VlR~-g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
|.+.+++.-+-+++-|-+ +.++|. +. ....++++++ |.++.+++.+|+.||+|.+++||.+|+|+-+++
T Consensus 72 L~fTVlFANfaEa~AEGrgKAqAdsLr~~~~~~~A~~l~~~g~~~~v~st~Lk~gdiV~V~age~IP~DGeVIe 145 (681)
T COG2216 72 LWFTVLFANFAEAVAEGRGKAQADSLRKTKTETIARLLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIE 145 (681)
T ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhcCCCCeeeccccccccCCEEEEecCCCccCCCeEEe
Confidence 334444444444444422 334432 22 2345677776 899999999999999999999999999999886
No 37
>KOG4383|consensus
Probab=92.45 E-value=0.41 Score=45.93 Aligned_cols=72 Identities=18% Similarity=0.134 Sum_probs=50.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHh---------hhh---------hcc----------cc-----c-eEEECCEEE
Q psy5837 106 YTTLIPLILIMVVSGIKEIIEDIKRHLA---------DGE---------INH----------RS-----V-DVIRNGMIY 151 (181)
Q Consensus 106 ~~~~~~l~~vl~i~~i~~~~~d~~~~k~---------d~~---------~n~----------~~-----~-~VlR~g~~~ 151 (181)
+...-.+.+.++.+.+.+.+||.-++++ |.. +.. .. | ..+|||..+
T Consensus 88 l~nAsal~LLLLlnilL~grQdRikrr~~eqklRg~~DaI~da~kdgreiq~~nam~~dL~~pfa~s~s~h~afRDGhlm 167 (1354)
T KOG4383|consen 88 LSNASALALLLLLNILLEGRQDRIKRRAFEQKLRGAFDAILDAEKDGREIQKFNAMPKDLEAPFADSASCHSAFRDGHLM 167 (1354)
T ss_pred echHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCccccCccCcHHHHHHHhccCeee
Confidence 3445566667777888888888554432 111 100 00 1 234999999
Q ss_pred EEecccCccCcEEEecCCCEecCcEE
Q psy5837 152 VEQWKDLKVGDIVKVYNNSFFPGDLM 177 (181)
Q Consensus 152 ~I~~~dLvvGDIV~L~~Gd~vPAD~~ 177 (181)
+++..=||.||||-+++|+.-||.+.
T Consensus 168 ~lP~~LLVeGDiIa~RPGQeafan~~ 193 (1354)
T KOG4383|consen 168 ELPRILLVEGDIIAFRPGQEAFANCE 193 (1354)
T ss_pred ecceeEEEeccEEEecCCcccccccc
Confidence 99999999999999999999999764
No 38
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=81.54 E-value=3.8 Score=40.55 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=37.7
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH---HHHHh--h---hhhccccce-E----EECCEEEEEecccCccCcEEEecC
Q psy5837 105 RYTTLIPLILIMVVSGIKEIIEDI---KRHLA--D---GEINHRSVD-V----IRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 105 ~~~~~~~l~~vl~i~~i~~~~~d~---~~~k~--d---~~~n~~~~~-V----lR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
....+++++++++++++.++.++. +-.+. . +.+.+.+.. | +.-|....+...|.+|.|.+.++.
T Consensus 131 ~~~il~~v~~~~~i~~~~e~~~~~~~~~l~~~~~~~~~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g 207 (941)
T TIGR01517 131 GVAILVSVILVVLVTAVNDYKKELQFRQLNREKSAQKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISG 207 (941)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCceEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEc
Confidence 344566666777788888777764 22221 1 112222222 1 235777888888888888888764
No 39
>KOG0210|consensus
Probab=80.57 E-value=10 Score=36.88 Aligned_cols=107 Identities=9% Similarity=0.085 Sum_probs=77.0
Q ss_pred CcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhc-----
Q psy5837 64 AKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGEIN----- 138 (181)
Q Consensus 64 ~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k~d~~~n----- 138 (181)
..|+.+.+++...|.+|.+.++++..+..++..+..-.....+..+++++.+.++.-..+-++.++|.+..+..+
T Consensus 90 n~~tF~p~vl~~qF~~F~nlyfll~alsQ~ip~~~ig~l~ty~~pl~fvl~itl~keavdd~~r~~rd~~~Nse~y~~lt 169 (1051)
T KOG0210|consen 90 NIFTFVPAVLFEQFKFFLNLYFLLVALSQLIPALKIGYLSTYWGPLGFVLTITLIKEAVDDLKRRRRDRELNSEKYTKLT 169 (1051)
T ss_pred ceEEeeHHHHHHHHHHHHHHHHHHHHHHhhCchheecchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhheeec
Confidence 356777777778899999999999998888877754444445556667777777877778899999888654322
Q ss_pred cc-----cceEEECCEEEEEecccCccCcEEEecCCC
Q psy5837 139 HR-----SVDVIRNGMIYVEQWKDLKVGDIVKVYNNS 170 (181)
Q Consensus 139 ~~-----~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd 170 (181)
.. +..-+.-|....+.-.+=+|.|.|.|+.-|
T Consensus 170 r~~~~~~~Ss~i~vGDvi~v~K~~RVPADmilLrTsd 206 (1051)
T KOG0210|consen 170 RDGTRREPSSDIKVGDVIIVHKDERVPADMILLRTSD 206 (1051)
T ss_pred cCCcccccccccccccEEEEecCCcCCcceEEEEccC
Confidence 11 122234577777888888999999998755
No 40
>PRK11507 ribosome-associated protein; Provisional
Probab=73.70 E-value=4.6 Score=27.49 Aligned_cols=26 Identities=15% Similarity=0.215 Sum_probs=22.9
Q ss_pred eEEECCEEEEEecccCccCcEEEecC
Q psy5837 143 DVIRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 143 ~VlR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
.|..||+...-.-+.|.+||+|.+..
T Consensus 38 ~V~VNGeve~rRgkKl~~GD~V~~~g 63 (70)
T PRK11507 38 QVKVDGAVETRKRCKIVAGQTVSFAG 63 (70)
T ss_pred ceEECCEEecccCCCCCCCCEEEECC
Confidence 46679999999999999999998865
No 41
>PF13275 S4_2: S4 domain; PDB: 1P9K_A.
Probab=68.87 E-value=2.7 Score=28.15 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=13.9
Q ss_pred eEEECCEEEEEecccCccCcEEEec
Q psy5837 143 DVIRNGMIYVEQWKDLKVGDIVKVY 167 (181)
Q Consensus 143 ~VlR~g~~~~I~~~dLvvGDIV~L~ 167 (181)
.|.-||+...-.-..|.+||+|.+.
T Consensus 34 ~V~VNGe~e~rrg~Kl~~GD~V~~~ 58 (65)
T PF13275_consen 34 EVKVNGEVETRRGKKLRPGDVVEID 58 (65)
T ss_dssp HHEETTB----SS----SSEEEEET
T ss_pred ceEECCEEccccCCcCCCCCEEEEC
Confidence 3557899999999999999999993
No 42
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=68.74 E-value=3.3 Score=26.59 Aligned_cols=12 Identities=33% Similarity=0.750 Sum_probs=10.5
Q ss_pred ccCcEEEecCCC
Q psy5837 159 KVGDIVKVYNNS 170 (181)
Q Consensus 159 vvGDIV~L~~Gd 170 (181)
.+||+|+|+.|-
T Consensus 2 ~~GDvV~LKSGG 13 (53)
T PF09926_consen 2 KIGDVVQLKSGG 13 (53)
T ss_pred CCCCEEEEccCC
Confidence 589999999984
No 43
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=64.86 E-value=19 Score=26.29 Aligned_cols=12 Identities=25% Similarity=0.805 Sum_probs=5.4
Q ss_pred chhhHHHHHHHH
Q psy5837 106 YTTLIPLILIMV 117 (181)
Q Consensus 106 ~~~~~~l~~vl~ 117 (181)
+..++|++++++
T Consensus 18 ~~~ll~lvii~~ 29 (106)
T PRK05585 18 LSSLLPLVVFFA 29 (106)
T ss_pred HHHHHHHHHHHH
Confidence 444455444433
No 44
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=64.82 E-value=9.7 Score=24.07 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=29.0
Q ss_pred ccccceEE-ECCEEEEEecc-cCccCcEEEecCCCEecC
Q psy5837 138 NHRSVDVI-RNGMIYVEQWK-DLKVGDIVKVYNNSFFPG 174 (181)
Q Consensus 138 n~~~~~Vl-R~g~~~~I~~~-dLvvGDIV~L~~Gd~vPA 174 (181)
....+.|+ .+|++.+|+-. +..+||-|.+...+..+.
T Consensus 4 ~~~~aiVlT~dGeF~~ik~~~~~~vG~eI~~~~~~~~~~ 42 (56)
T PF12791_consen 4 KKKYAIVLTPDGEFIKIKRKPGMEVGQEIEFDEKDIINK 42 (56)
T ss_pred cCCEEEEEcCCCcEEEEeCCCCCcccCEEEEechhhccc
Confidence 34456666 58999998875 899999999998887654
No 45
>PF12148 DUF3590: Protein of unknown function (DUF3590); InterPro: IPR021991 This domain is found in eukaryotes, and is typically between 83 and 97 amino acids in length. It is found in association with PF00097 from PFAM, PF02182 from PFAM, PF00628 from PFAM, PF00240 from PFAM. There are two conserved sequence motifs: RAR and NYN. The domain is part of the protein NIRF which has zinc finger and ubiquitinating domains. The function of this domain is likely to be mainly structural, however this has not been confirmed. ; PDB: 3DB4_A 3ASK_A 3DB3_A 2L3R_A.
Probab=64.41 E-value=3.2 Score=29.36 Aligned_cols=21 Identities=38% Similarity=0.664 Sum_probs=11.9
Q ss_pred EEEEEecccCccCcEEEecCC
Q psy5837 149 MIYVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 149 ~~~~I~~~dLvvGDIV~L~~G 169 (181)
....++|.+|.||++|.+.-+
T Consensus 57 ARt~l~w~~L~VG~~VMvNYN 77 (85)
T PF12148_consen 57 ARTILKWDELKVGQVVMVNYN 77 (85)
T ss_dssp --SBE-GGG--TT-EEEEEE-
T ss_pred eeEeccHHhCCcccEEEEecC
Confidence 445689999999999998543
No 46
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=63.89 E-value=8.9 Score=26.19 Aligned_cols=27 Identities=30% Similarity=0.167 Sum_probs=21.5
Q ss_pred cceEEECCEEEEEecccCccCcEEEec
Q psy5837 141 SVDVIRNGMIYVEQWKDLKVGDIVKVY 167 (181)
Q Consensus 141 ~~~VlR~g~~~~I~~~dLvvGDIV~L~ 167 (181)
...+.++|....+..++|.+||.|.+.
T Consensus 73 ~~~~~~~~~~~w~~a~~l~~gd~v~~~ 99 (100)
T smart00306 73 LLLVRDGGKLVWVFASELKPGDYVLVP 99 (100)
T ss_pred EEEEecCCcEEEEEHHHCCCCCEEEec
Confidence 345556777778999999999999864
No 47
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=63.72 E-value=9 Score=27.90 Aligned_cols=36 Identities=31% Similarity=0.321 Sum_probs=26.1
Q ss_pred hhhhhccccceEEECCEEEEEecccCccCcEEEecCCCE
Q psy5837 133 ADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSF 171 (181)
Q Consensus 133 ~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~ 171 (181)
+.+.+....++ =||+.. .+++++++||+|.|.-|..
T Consensus 27 Ak~~~~~GrV~--vNG~~a-KpS~~VK~GD~l~i~~~~~ 62 (100)
T COG1188 27 AKEMIEGGRVK--VNGQRA-KPSKEVKVGDILTIRFGNK 62 (100)
T ss_pred HHHHHHCCeEE--ECCEEc-ccccccCCCCEEEEEeCCc
Confidence 44445555554 467666 8899999999999987764
No 48
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=63.50 E-value=13 Score=23.76 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=25.0
Q ss_pred HHHhhhhhccccceEEECCEEEEEecccCccCcEEEe
Q psy5837 130 RHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKV 166 (181)
Q Consensus 130 ~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L 166 (181)
|.++.+.+....+.| ||+...-+...|..||.|.+
T Consensus 24 R~~~k~li~~G~V~V--Ng~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 24 GGQAKWFLQENEVLV--NGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred HHHHHHHHHcCCEEE--CCEEccCCCCCCCCCCEEEe
Confidence 334444555666665 88877777889999999975
No 49
>PF11694 DUF3290: Protein of unknown function (DUF3290); InterPro: IPR021707 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=62.63 E-value=26 Score=27.18 Aligned_cols=21 Identities=24% Similarity=0.096 Sum_probs=15.3
Q ss_pred EEEEEecccCccCcEEEecCC
Q psy5837 149 MIYVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 149 ~~~~I~~~dLvvGDIV~L~~G 169 (181)
+..-+.+..+.=|=||++...
T Consensus 97 ~~v~VNst~l~dG~iVki~~~ 117 (149)
T PF11694_consen 97 EEVYVNSTALTDGMIVKIGDK 117 (149)
T ss_pred heEEEecccccCCeEEEECCc
Confidence 445577888888888888744
No 50
>PRK04980 hypothetical protein; Provisional
Probab=60.81 E-value=21 Score=26.09 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=29.4
Q ss_pred hhccccceEEECCEEEEEecccCccCcEEEec--CCCEecCcEEEee
Q psy5837 136 EINHRSVDVIRNGMIYVEQWKDLKVGDIVKVY--NNSFFPGDLMVLS 180 (181)
Q Consensus 136 ~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~--~Gd~vPAD~~LL~ 180 (181)
.++..+.--+|+|. ....+|||++.+. .++..-|++.+++
T Consensus 15 ILsGkKTiTiRd~s-----e~~~~~G~~~~V~~~e~g~~~c~ieI~s 56 (102)
T PRK04980 15 ILAGRKTITIRDES-----ESHFKPGDVLRVGTFEDDRYFCTIEVLS 56 (102)
T ss_pred HHcCCceEEeeCCc-----ccCCCCCCEEEEEECCCCcEEEEEEEEE
Confidence 44555555567753 5679999999997 7778888888764
No 51
>PRK10348 ribosome-associated heat shock protein Hsp15; Provisional
Probab=59.60 E-value=15 Score=28.08 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=29.3
Q ss_pred HHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCE
Q psy5837 131 HLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSF 171 (181)
Q Consensus 131 ~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~ 171 (181)
..+...+....|+| ||+. ..++.++.+||.|.+..|..
T Consensus 25 s~A~~lI~~G~V~v--nG~~-~Kps~~V~~gd~l~v~~~~~ 62 (133)
T PRK10348 25 ALAREMIEGGKVHY--NGQR-SKPSKIVELNATLTLRQGND 62 (133)
T ss_pred HHHHHHHHCCCEEE--CCEE-CCCCCccCCCCEEEEEECCE
Confidence 34555566666665 7888 78999999999999988764
No 52
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=55.76 E-value=38 Score=30.06 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=27.1
Q ss_pred hhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 136 EINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 136 ~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
.+.+..++++-+....++. +|-|.++.|+.+|||+++..
T Consensus 237 ~L~~~gV~v~~~~~v~~v~------~~~v~~~~g~~i~~d~vi~~ 275 (424)
T PTZ00318 237 RLRRLGVDIRTKTAVKEVL------DKEVVLKDGEVIPTGLVVWS 275 (424)
T ss_pred HHHHCCCEEEeCCeEEEEe------CCEEEECCCCEEEccEEEEc
Confidence 3445567777666655553 34567899999999998864
No 53
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=52.74 E-value=33 Score=22.95 Aligned_cols=31 Identities=29% Similarity=0.155 Sum_probs=23.2
Q ss_pred ccceEEECCEEEEEec---ccCccCcEEEecCCC
Q psy5837 140 RSVDVIRNGMIYVEQW---KDLKVGDIVKVYNNS 170 (181)
Q Consensus 140 ~~~~VlR~g~~~~I~~---~dLvvGDIV~L~~Gd 170 (181)
..+.|-.+|..+++.. .++.|||-|.+..|-
T Consensus 17 ~~A~v~~~G~~~~V~~~lv~~v~~Gd~VLVHaG~ 50 (68)
T PF01455_consen 17 GMAVVDFGGVRREVSLALVPDVKVGDYVLVHAGF 50 (68)
T ss_dssp TEEEEEETTEEEEEEGTTCTSB-TT-EEEEETTE
T ss_pred CEEEEEcCCcEEEEEEEEeCCCCCCCEEEEecCh
Confidence 4566778899888875 478999999999984
No 54
>COG2501 S4-like RNA binding protein [Replication, recombination, and repair]
Probab=51.80 E-value=21 Score=24.53 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=23.7
Q ss_pred ceEEECCEEEEEecccCccCcEEEecC
Q psy5837 142 VDVIRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 142 ~~VlR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
-.|..||+...-.-+.|+.||+|.+..
T Consensus 37 g~V~vNGe~EtRRgkKlr~gd~V~i~~ 63 (73)
T COG2501 37 GEVKVNGEVETRRGKKLRDGDVVEIPG 63 (73)
T ss_pred CeEEECCeeeeccCCEeecCCEEEECC
Confidence 367789999999999999999998865
No 55
>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []. This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.
Probab=51.04 E-value=7.8 Score=27.14 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=16.0
Q ss_pred EecccCccCcEEEe-cCCCEecC
Q psy5837 153 EQWKDLKVGDIVKV-YNNSFFPG 174 (181)
Q Consensus 153 I~~~dLvvGDIV~L-~~Gd~vPA 174 (181)
+.-.+|.+||.|.+ ++||.+|-
T Consensus 45 i~~~~i~~Gd~V~V~raGdVIP~ 67 (82)
T PF03120_consen 45 IKELDIRIGDTVLVTRAGDVIPK 67 (82)
T ss_dssp HHHTT-BBT-EEEEEEETTTEEE
T ss_pred HHHcCCCCCCEEEEEECCCccce
Confidence 44679999999988 46999995
No 56
>KOG3416|consensus
Probab=47.75 E-value=12 Score=28.56 Aligned_cols=14 Identities=21% Similarity=0.439 Sum_probs=11.9
Q ss_pred cCccCcEEEecCCC
Q psy5837 157 DLKVGDIVKVYNNS 170 (181)
Q Consensus 157 dLvvGDIV~L~~Gd 170 (181)
-+.|||||+|..|-
T Consensus 61 ~~~PGDIirLt~Gy 74 (134)
T KOG3416|consen 61 LIQPGDIIRLTGGY 74 (134)
T ss_pred ccCCccEEEecccc
Confidence 48899999998873
No 57
>CHL00113 rps4 ribosomal protein S4; Reviewed
Probab=46.95 E-value=29 Score=28.21 Aligned_cols=36 Identities=31% Similarity=0.229 Sum_probs=27.5
Q ss_pred HHhhhhhccccceEEECCEEEEEecccCccCcEEEecC
Q psy5837 131 HLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 131 ~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
..+.+.+.+..+.| ||+...+++..+.+||+|.+..
T Consensus 105 ~~ArqlI~~G~V~V--NGk~v~~ps~~Vk~GD~I~V~~ 140 (201)
T CHL00113 105 PAARQLVNHGHILV--NGRIVDIPSYRCKPKDIITVKD 140 (201)
T ss_pred HHHHHHHHCCcEEE--CCEEecCccccCCCCCEEEEcc
Confidence 34444555655554 8999999999999999999964
No 58
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=44.57 E-value=1e+02 Score=30.45 Aligned_cols=20 Identities=15% Similarity=0.029 Sum_probs=9.6
Q ss_pred CEEEEEecccCccCcEEEec
Q psy5837 148 GMIYVEQWKDLKVGDIVKVY 167 (181)
Q Consensus 148 g~~~~I~~~dLvvGDIV~L~ 167 (181)
|....+...|.+|-|.+.++
T Consensus 152 GDiV~l~~Gd~VPaDg~li~ 171 (867)
T TIGR01524 152 GDLIELAAGDIIPADARVIS 171 (867)
T ss_pred CCEEEECCCCEEcccEEEEe
Confidence 44444445555555544443
No 59
>TIGR03069 PS_II_S4 photosystem II S4 domain protein. Members of this protein family are about 265 residues long and each contains an S4 RNA-binding domain of about 48 residues. The member from the Cyanobacterium, Synechocystis sp. PCC 6803, was detected as a novel polypeptide in a highly purified preparation of active photosystem II (Kashino, et al., 2002). The phylogenetic distribution, including Cyanobacteria and Arabidopsis, supports a role in photosystem II, although the high bit score cutoffs for this model reflect similar sequences in non-photosynthetic organisms such as Carboxydothermus hydrogenoformans, a Gram-positive bacterium.
Probab=43.52 E-value=49 Score=27.83 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=32.0
Q ss_pred HHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEec-CCC
Q psy5837 128 IKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVY-NNS 170 (181)
Q Consensus 128 ~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~-~Gd 170 (181)
..|.++.+.+.+..|+| ||+...-+...+.+||+|.++ .|-
T Consensus 196 ~SRs~a~~lI~~G~V~V--Ng~~v~~~s~~v~~gD~IsvrG~Gr 237 (257)
T TIGR03069 196 LSRSKIVDQIKAGRLRL--NWKTVTQPSRELKVGDRLQLRGKGR 237 (257)
T ss_pred hhHHHHHHHHHCCeEEE--CCEEcCCCCCcCCCCCEEEEcCCce
Confidence 45667777777777665 898888889999999999998 443
No 60
>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....
Probab=43.50 E-value=19 Score=28.69 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=19.7
Q ss_pred ECCEEEEEecccCccCcEEEecCC
Q psy5837 146 RNGMIYVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 146 R~g~~~~I~~~dLvvGDIV~L~~G 169 (181)
+-|....++..|.+|.|.+.++.|
T Consensus 53 ~~GDiI~l~~g~~vPaD~~ll~~g 76 (230)
T PF00122_consen 53 VPGDIIILKAGDIVPADGILLESG 76 (230)
T ss_dssp -TTSEEEEETTEBESSEEEEEESS
T ss_pred cceeeeecccccccccCccceecc
Confidence 468888899999999999999844
No 61
>TIGR01017 rpsD_bact ribosomal protein S4, bacterial/organelle type. This model finds organelle (chloroplast and mitochondrial) ribosomal protein S4 as well as bacterial ribosomal protein S4.
Probab=43.34 E-value=33 Score=27.76 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=27.6
Q ss_pred HHHhhhhhccccceEEECCEEEEEecccCccCcEEEecC
Q psy5837 130 RHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 130 ~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
+.++.+.+.+..+. -||+....+...+.+||+|.+..
T Consensus 105 R~~ArqlI~~G~V~--VNgk~v~~ps~~V~~GD~I~V~~ 141 (200)
T TIGR01017 105 RFAARQLVSHGHIL--VNGKKVDIPSYQVRPGDIISIKE 141 (200)
T ss_pred HHHHHHHHHCCCEE--ECCEEeCCCCCCCCCCCEEEEee
Confidence 33444555555555 48999999999999999999864
No 62
>PRK14715 DNA polymerase II large subunit; Provisional
Probab=42.51 E-value=19 Score=37.38 Aligned_cols=30 Identities=27% Similarity=0.322 Sum_probs=26.0
Q ss_pred cceEEECCEEEEEecccCccCcEEEecCCC
Q psy5837 141 SVDVIRNGMIYVEQWKDLKVGDIVKVYNNS 170 (181)
Q Consensus 141 ~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd 170 (181)
.+.|+++|+|.++.+.||++||.|.+-..+
T Consensus 989 PVLv~~~Gk~i~K~A~dlK~GD~vvIPK~~ 1018 (1627)
T PRK14715 989 PVMVYENGKFIKKRAMDVKEGDLMLIPKLD 1018 (1627)
T ss_pred ceEEeccCccceeehhhcCcCceeeccccc
Confidence 467788999999999999999999887653
No 63
>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.
Probab=41.89 E-value=36 Score=24.54 Aligned_cols=29 Identities=31% Similarity=0.184 Sum_probs=22.7
Q ss_pred cceEEECCEEEEEecccCccCcEEEecCC
Q psy5837 141 SVDVIRNGMIYVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 141 ~~~VlR~g~~~~I~~~dLvvGDIV~L~~G 169 (181)
...+.+++.+..++.++|.+||.+.+...
T Consensus 73 ~~~~~~~~~~~~~~a~~l~~gd~l~~~~~ 101 (136)
T cd00081 73 LLFVLEDGELKWVFASDLKPGDYVLVPVL 101 (136)
T ss_pred EEEEEeCCeEEEEEHHHCCCCCEEEEccc
Confidence 34555666788899999999999998743
No 64
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=41.55 E-value=80 Score=27.74 Aligned_cols=41 Identities=10% Similarity=0.250 Sum_probs=29.7
Q ss_pred hhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 136 EINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 136 ~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
.+....++++.+.....+...+. ++.+..|+.++||.+++.
T Consensus 188 ~l~~~gV~v~~~~~v~~i~~~~~----~v~~~~g~~i~~D~vi~a 228 (427)
T TIGR03385 188 ELKKHEINLRLNEEVDSIEGEER----VKVFTSGGVYQADMVILA 228 (427)
T ss_pred HHHHcCCEEEeCCEEEEEecCCC----EEEEcCCCEEEeCEEEEC
Confidence 34455688888887777765442 256788999999999875
No 65
>PF14168 YjzC: YjzC-like protein
Probab=41.13 E-value=38 Score=22.10 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=18.5
Q ss_pred CCEEEEEecc--cCccCcEEEecCCCEecC
Q psy5837 147 NGMIYVEQWK--DLKVGDIVKVYNNSFFPG 174 (181)
Q Consensus 147 ~g~~~~I~~~--dLvvGDIV~L~~Gd~vPA 174 (181)
+|..++|--. .+.=+-.|.|+.||++|-
T Consensus 16 ~G~Y~EvG~~G~~v~~p~~v~l~~Gd~fP~ 45 (57)
T PF14168_consen 16 NGTYVEVGERGGHVNNPKEVKLKKGDRFPP 45 (57)
T ss_pred CceEEEECCCCCccCCCcEEEecCCCcCcC
Confidence 4555544332 344556999999999994
No 66
>PRK05327 rpsD 30S ribosomal protein S4; Validated
Probab=40.47 E-value=44 Score=27.10 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=27.3
Q ss_pred HHHhhhhhccccceEEECCEEEEEecccCccCcEEEecC
Q psy5837 130 RHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 130 ~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
+.++.+.+++.. |.-||+...++...+.+||+|.+..
T Consensus 108 R~~arqlI~~G~--V~VNgk~v~~ps~~v~~GD~I~v~~ 144 (203)
T PRK05327 108 RRQARQLVSHGH--ILVNGKKVNIPSYRVKPGDVIEVRE 144 (203)
T ss_pred HHHHHHHHHCCc--EEECCEEECCCCcCCCCCCEEEECC
Confidence 334444455554 4458998888999999999999975
No 67
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=38.71 E-value=86 Score=28.19 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=27.9
Q ss_pred ccccceEEECCEEEEEec-ccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 138 NHRSVDVIRNGMIYVEQW-KDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 138 n~~~~~VlR~g~~~~I~~-~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+....++++ ++...+.. .+-+.| |.+..|+.+.||.+|+.+
T Consensus 107 ~~~nl~i~~-~~V~~l~~e~~~v~G--V~~~~g~~~~a~~vVlaT 148 (392)
T PF01134_consen 107 SHPNLTIIQ-GEVTDLIVENGKVKG--VVTKDGEEIEADAVVLAT 148 (392)
T ss_dssp TSTTEEEEE-S-EEEEEECTTEEEE--EEETTSEEEEECEEEE-T
T ss_pred cCCCeEEEE-cccceEEecCCeEEE--EEeCCCCEEecCEEEEec
Confidence 346677765 45555544 455566 778899999999999864
No 68
>PRK11479 hypothetical protein; Provisional
Probab=38.46 E-value=16 Score=31.27 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=16.6
Q ss_pred EEecccCccCcEEEecCCC
Q psy5837 152 VEQWKDLKVGDIVKVYNNS 170 (181)
Q Consensus 152 ~I~~~dLvvGDIV~L~~Gd 170 (181)
.|++.+|++||||..+.+.
T Consensus 59 ~Vs~~~LqpGDLVFfst~t 77 (274)
T PRK11479 59 EITAPDLKPGDLLFSSSLG 77 (274)
T ss_pred ccChhhCCCCCEEEEecCC
Confidence 6889999999999987664
No 69
>PF07591 PT-HINT: Pretoxin HINT domain; InterPro: IPR011451 This entry represents a cluster of homologous proteins identified in Leptospira interrogans. One member (Q8EZX6 from SWISSPROT) has been predicted to be a phenazine biosynthesis family protein.; PDB: 2JNQ_A 2JMZ_A.
Probab=35.39 E-value=30 Score=25.86 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=16.9
Q ss_pred EEEecccCccCcEEEecCCCEecCc
Q psy5837 151 YVEQWKDLKVGDIVKVYNNSFFPGD 175 (181)
Q Consensus 151 ~~I~~~dLvvGDIV~L~~Gd~vPAD 175 (181)
..+++++|++||-+.-..|+.....
T Consensus 70 gWv~A~~L~~GD~L~~~~G~~~~v~ 94 (130)
T PF07591_consen 70 GWVEAEDLKVGDRLLTADGSWVTVT 94 (130)
T ss_dssp --EEGGG--TTSEEEEE-SSEEEEE
T ss_pred hhhhHhhCCCCCEEEcCCCCEEEEE
Confidence 3588999999999999999876543
No 70
>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain. IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th
Probab=34.22 E-value=81 Score=20.26 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=13.6
Q ss_pred CCEEEEEecccCccCcEEEecC
Q psy5837 147 NGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 147 ~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
.|+++ ..-..++|||.|.++.
T Consensus 31 rGklr-~~~~~~~vGD~V~~~~ 51 (64)
T cd04451 31 SGKMR-MNYIRILPGDRVKVEL 51 (64)
T ss_pred Cceee-cCCcccCCCCEEEEEE
Confidence 34444 1223489999999983
No 71
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=34.13 E-value=2.7e+02 Score=28.13 Aligned_cols=64 Identities=11% Similarity=0.172 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 109 LIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 109 ~~~l~~vl~i~~i~~~~~d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
+.--++++++..+......++++++.+++.+... ......+ ++-|..+.+...|.+|-|+++|+
T Consensus 193 ~~~~~~i~~i~~~~~~~~~~~~~k~~~~L~~~~~----~~~~v~V----~Rdg~~~~I~s~eLvpGDiv~l~ 256 (1054)
T TIGR01657 193 YYYSLCIVFMSSTSISLSVYQIRKQMQRLRDMVH----KPQSVIV----IRNGKWVTIASDELVPGDIVSIP 256 (1054)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CCeeEEE----EECCEEEEEEcccCCCCCEEEEe
Confidence 3445566777777777788888888888877432 1222223 23488899999999999999986
No 72
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=34.02 E-value=33 Score=25.21 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=17.2
Q ss_pred cccCccCcEEEecC---CCEecCcEE
Q psy5837 155 WKDLKVGDIVKVYN---NSFFPGDLM 177 (181)
Q Consensus 155 ~~dLvvGDIV~L~~---Gd~vPAD~~ 177 (181)
.+++.|||.|.+.. |+.+.+.+.
T Consensus 29 r~~ikvGD~I~f~~~~~~~~l~v~V~ 54 (109)
T cd06555 29 RQQIKVGDKILFNDLDTGQQLLVKVV 54 (109)
T ss_pred hhcCCCCCEEEEEEcCCCcEEEEEEE
Confidence 36899999999987 556666543
No 73
>PRK08433 flagellar motor switch protein; Validated
Probab=33.65 E-value=37 Score=25.08 Aligned_cols=12 Identities=8% Similarity=0.437 Sum_probs=6.7
Q ss_pred cCccCcEEEecC
Q psy5837 157 DLKVGDIVKVYN 168 (181)
Q Consensus 157 dLvvGDIV~L~~ 168 (181)
++.+||+|.|..
T Consensus 52 ~Lq~GDVI~Ld~ 63 (111)
T PRK08433 52 KFEKGSVIDLEK 63 (111)
T ss_pred CCCCCCEEEeCC
Confidence 455666666544
No 74
>PRK06788 flagellar motor switch protein; Validated
Probab=33.37 E-value=36 Score=25.47 Aligned_cols=22 Identities=9% Similarity=0.213 Sum_probs=10.4
Q ss_pred ecccCccCcEEEecCCCEecCc
Q psy5837 154 QWKDLKVGDIVKVYNNSFFPGD 175 (181)
Q Consensus 154 ~~~dLvvGDIV~L~~Gd~vPAD 175 (181)
-..++.++|++.|+.||.||.|
T Consensus 43 G~t~ltl~DlL~L~vGDVI~Ld 64 (119)
T PRK06788 43 GKASITLGDVKQLKVGDVLEVE 64 (119)
T ss_pred ecceecHHHHhCCCCCCEEEeC
Confidence 3344444444444444444444
No 75
>PRK10838 spr outer membrane lipoprotein; Provisional
Probab=33.20 E-value=26 Score=28.26 Aligned_cols=19 Identities=26% Similarity=0.335 Sum_probs=15.4
Q ss_pred EEecccCccCcEEEecCCC
Q psy5837 152 VEQWKDLKVGDIVKVYNNS 170 (181)
Q Consensus 152 ~I~~~dLvvGDIV~L~~Gd 170 (181)
.|+.+++.|||+|..+.|.
T Consensus 123 ~V~~~~lqpGDLVfF~~~~ 141 (190)
T PRK10838 123 SVSRSKLRTGDLVLFRAGS 141 (190)
T ss_pred CcccCCCCCCcEEEECCCC
Confidence 4667899999999987553
No 76
>TIGR02219 phage_NlpC_fam putative phage cell wall peptidase, NlpC/P60 family. Members of this family show sequence similarity to members of the NlpC/P60 family described by Pfam model pfam00877 and by Anantharaman and Aravind (PubMed:12620121). The NlpC/P60 family includes a number of characterized bacterial cell wall hydrolases. Members of this related family are all found in prophage regions of bacterial genomes.
Probab=33.18 E-value=23 Score=26.56 Aligned_cols=17 Identities=12% Similarity=0.061 Sum_probs=14.3
Q ss_pred EEecccCccCcEEEecC
Q psy5837 152 VEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 152 ~I~~~dLvvGDIV~L~~ 168 (181)
.++.+++++||+|..+.
T Consensus 71 ~v~~~~~qpGDlvff~~ 87 (134)
T TIGR02219 71 PVPCDAAQPGDVLVFRW 87 (134)
T ss_pred ccchhcCCCCCEEEEee
Confidence 46778999999999863
No 77
>PRK15078 polysaccharide export protein Wza; Provisional
Probab=32.71 E-value=56 Score=29.04 Aligned_cols=30 Identities=30% Similarity=0.251 Sum_probs=22.2
Q ss_pred cccceEEECCEEEEEeccc------------CccCcEEEecC
Q psy5837 139 HRSVDVIRNGMIYVEQWKD------------LKVGDIVKVYN 168 (181)
Q Consensus 139 ~~~~~VlR~g~~~~I~~~d------------LvvGDIV~L~~ 168 (181)
...+.+.|+|+...++..+ |.+||+|.+..
T Consensus 210 ~~~V~l~R~g~~~~i~l~~ll~~g~~~~ni~L~~GDvI~Vp~ 251 (379)
T PRK15078 210 WRNVVLTHNGKEERISLQALMQNGDLSQNRLLYPGDILYVPR 251 (379)
T ss_pred cceEEEEECCeEEEEEHHHHHhcCCcccCceeCCCCEEEECC
Confidence 3568899999988887543 56788877755
No 78
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=32.57 E-value=1.1e+02 Score=31.00 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=13.1
Q ss_pred CEEEEEecccCccCcEEEecC
Q psy5837 148 GMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 148 g~~~~I~~~dLvvGDIV~L~~ 168 (181)
|....+...|.+|.|...++.
T Consensus 139 GDIv~L~~Gd~VPAD~rLi~~ 159 (1053)
T TIGR01523 139 GDICLLKTGDTIPADLRLIET 159 (1053)
T ss_pred CCEEEECCCCEeeccEEEEEe
Confidence 556666666666666666653
No 79
>PF06107 DUF951: Bacterial protein of unknown function (DUF951); InterPro: IPR009296 This family consists of several short hypothetical bacterial proteins of unknown function.
Probab=32.36 E-value=33 Score=22.44 Aligned_cols=12 Identities=42% Similarity=0.764 Sum_probs=10.2
Q ss_pred cCccCcEEEecC
Q psy5837 157 DLKVGDIVKVYN 168 (181)
Q Consensus 157 dLvvGDIV~L~~ 168 (181)
++.+||||.++.
T Consensus 1 ~~~vgDiV~mKK 12 (57)
T PF06107_consen 1 EYEVGDIVEMKK 12 (57)
T ss_pred CccCCCEEEEcC
Confidence 467999999986
No 80
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=32.33 E-value=2.1e+02 Score=28.55 Aligned_cols=98 Identities=14% Similarity=0.199 Sum_probs=55.9
Q ss_pred HHHHHHc-cchHHHHHHHHHHHHHhcccCCCCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEECCEEE
Q psy5837 74 CFLFEQF-RRYSNIFFLFIALLQQIPDVSPTGRY-TTLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIY 151 (181)
Q Consensus 74 ~~l~~qf-~~~~ni~lL~iail~~i~~i~~~~~~-~~~~~l~~vl~i~~i~~~~~d~~~~k~d~~~n~~~~~VlR~g~~~ 151 (181)
..+|..| +.+.+.+.+++.+..++ .+. ..+.--++++++..+..++..++++|+.+.+..-+-.+- .. .
T Consensus 91 ~s~~~~~~~~~~~p~~~lL~~aa~l------s~~~~~~~~a~~I~~iv~i~~~i~~~qe~ra~~~~~~L~~l~~--~~-a 161 (902)
T PRK10517 91 LPWWVHLWVCYRNPFNILLTILGAI------SYATEDLFAAGVIALMVAISTLLNFIQEARSTKAADALKAMVS--NT-A 161 (902)
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHH------HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--Ce-E
Confidence 3355444 34444444444443332 232 233444556667777777888888888888887544321 12 1
Q ss_pred EEecccCc---cCcEEEecCCCEecCcEEEeeC
Q psy5837 152 VEQWKDLK---VGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 152 ~I~~~dLv---vGDIV~L~~Gd~vPAD~~LL~S 181 (181)
.+-. +-. -|....+...|.+|-|+++++.
T Consensus 162 ~ViR-~g~~~~~g~~~~I~~~eLvpGDiV~l~~ 193 (902)
T PRK10517 162 TVLR-VINDKGENGWLEIPIDQLVPGDIIKLAA 193 (902)
T ss_pred EEEE-CCccCCCCeEEEEEHHhCCCCCEEEECC
Confidence 2211 111 1567888889999999988863
No 81
>cd00165 S4 S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized functional similarity between these three protein classes.
Probab=31.96 E-value=83 Score=19.11 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=23.8
Q ss_pred hhhhhccccceEEECCEEEEEecccCccCcEEEecCC
Q psy5837 133 ADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 133 ~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~G 169 (181)
+.+.+.+..+ .-||+....+...+.+||.|.+...
T Consensus 19 ~~~~i~~g~V--~vn~~~~~~~~~~v~~~d~i~i~~~ 53 (70)
T cd00165 19 ARQLIKHGHV--LVNGKVVTKPSYKVKPGDVIEVDGK 53 (70)
T ss_pred HHHHHHcCCE--EECCEEccCCccCcCCCCEEEEcCC
Confidence 3334444443 4588877667788899999998753
No 82
>PRK06033 hypothetical protein; Validated
Probab=30.78 E-value=46 Score=23.13 Aligned_cols=12 Identities=8% Similarity=0.279 Sum_probs=7.1
Q ss_pred cCccCcEEEecC
Q psy5837 157 DLKVGDIVKVYN 168 (181)
Q Consensus 157 dLvvGDIV~L~~ 168 (181)
++.+||++.|..
T Consensus 27 ~L~~GDVI~L~~ 38 (83)
T PRK06033 27 RMGRGAVIPLDA 38 (83)
T ss_pred CCCCCCEEEeCC
Confidence 455666666644
No 83
>TIGR00074 hypC_hupF hydrogenase assembly chaperone HypC/HupF. An additional proposed function is to shuttle the iron atom that has been liganded at the HypC/HypD complex to the precursor of the large hydrogenase (HycE) subunit. PubMed:12441107.
Probab=30.68 E-value=81 Score=21.63 Aligned_cols=29 Identities=28% Similarity=0.098 Sum_probs=20.6
Q ss_pred ceEEECCEEEEEe---cccCccCcEEEecCCC
Q psy5837 142 VDVIRNGMIYVEQ---WKDLKVGDIVKVYNNS 170 (181)
Q Consensus 142 ~~VlR~g~~~~I~---~~dLvvGDIV~L~~Gd 170 (181)
+.|=-+|..+++. ..++.|||-|.++.|-
T Consensus 17 A~v~~~G~~~~v~l~lv~~~~vGD~VLVH~G~ 48 (76)
T TIGR00074 17 ALVEFCGIKRDVSLDLVGEVKVGDYVLVHVGF 48 (76)
T ss_pred EEEEcCCeEEEEEEEeeCCCCCCCEEEEecCh
Confidence 4444566666554 2589999999999884
No 84
>PF15584 Imm44: Immunity protein 44
Probab=30.55 E-value=23 Score=25.44 Aligned_cols=18 Identities=11% Similarity=-0.001 Sum_probs=14.0
Q ss_pred cCcEEEecCCCEecCcEE
Q psy5837 160 VGDIVKVYNNSFFPGDLM 177 (181)
Q Consensus 160 vGDIV~L~~Gd~vPAD~~ 177 (181)
+.+-..++.|++||||++
T Consensus 13 ~~~~~~I~SG~~iP~~GI 30 (94)
T PF15584_consen 13 PSEGGVIKSGQEIPCDGI 30 (94)
T ss_pred CCCCCEEecCCCcccCCe
Confidence 344556789999999986
No 85
>PF01479 S4: S4 domain; InterPro: IPR002942 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterised, small proteins that may be involved in translation regulation []. The S4 domain probably mediates binding to RNA.; GO: 0003723 RNA binding; PDB: 3BBU_A 1DM9_B 2K6P_A 3U5G_E 3U5C_E 3IZB_D 2XZM_D 2XZN_D 3O30_E 3O2Z_E ....
Probab=30.23 E-value=50 Score=19.70 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=23.1
Q ss_pred HHhhhhhccccceEEECCEEEEEecccCccCcEE
Q psy5837 131 HLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIV 164 (181)
Q Consensus 131 ~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV 164 (181)
..+.+.+.+..++ -||+..+-+...+.+||+|
T Consensus 17 ~~a~~~I~~g~V~--VNg~~v~~~~~~v~~~d~I 48 (48)
T PF01479_consen 17 SEARRLIKQGRVK--VNGKVVKDPSYIVKPGDVI 48 (48)
T ss_dssp HHHHHHHHTTTEE--ETTEEESSTTSBESTTEEE
T ss_pred HHHHHhcCCCEEE--ECCEEEcCCCCCCCCcCCC
Confidence 3444555555554 5899888889999999986
No 86
>COG0522 RpsD Ribosomal protein S4 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=29.61 E-value=47 Score=27.16 Aligned_cols=37 Identities=22% Similarity=0.177 Sum_probs=28.3
Q ss_pred hhhccccceEEECCEEEEEecccCccCcEEEecCCCEec
Q psy5837 135 GEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFP 173 (181)
Q Consensus 135 ~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vP 173 (181)
+-+++. +|.-||+.+.+|+--+.+||.+.|..-+.-|
T Consensus 114 QlV~HG--HI~VnGk~V~iPSy~V~~gdei~V~~k~~s~ 150 (205)
T COG0522 114 QLVSHG--HILVNGKRVNIPSYLVSPGDEISVREKSKSP 150 (205)
T ss_pred HHhhcc--eEEECCEEeccCcEEecCCCEEEeeecccch
Confidence 334444 4456899999999999999999998755443
No 87
>PRK14584 hmsS hemin storage system protein; Provisional
Probab=29.49 E-value=2.8e+02 Score=21.72 Aligned_cols=13 Identities=31% Similarity=0.567 Sum_probs=8.7
Q ss_pred CcEEEecCCCEec
Q psy5837 161 GDIVKVYNNSFFP 173 (181)
Q Consensus 161 GDIV~L~~Gd~vP 173 (181)
|.|+.++.|..+|
T Consensus 132 G~Ii~V~~~~~~p 144 (153)
T PRK14584 132 GHIIDVKEGLQLP 144 (153)
T ss_pred CCEEEeecCCCCC
Confidence 6667776666666
No 88
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=29.48 E-value=1.6e+02 Score=25.04 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=26.4
Q ss_pred hhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 136 EINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 136 ~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
.+.+..++++.+-...++. ++-|.+..|+.++||.+++.
T Consensus 200 ~l~~~gV~v~~~~~v~~i~------~~~v~~~~g~~i~~D~vi~a 238 (364)
T TIGR03169 200 LLARRGIEVHEGAPVTRGP------DGALILADGRTLPADAILWA 238 (364)
T ss_pred HHHHCCCEEEeCCeeEEEc------CCeEEeCCCCEEecCEEEEc
Confidence 3444567777665555553 23567788999999999875
No 89
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=28.81 E-value=1.7e+02 Score=24.08 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=13.0
Q ss_pred ecccCccCcEEEecCCC
Q psy5837 154 QWKDLKVGDIVKVYNNS 170 (181)
Q Consensus 154 ~~~dLvvGDIV~L~~Gd 170 (181)
...|+++||+|+|.--+
T Consensus 178 ~~~d~~~G~vVKl~VE~ 194 (206)
T PF09874_consen 178 AVPDVEEGDVVKLLVEE 194 (206)
T ss_pred CCCCCCCCceEEEEEec
Confidence 34599999999986544
No 90
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=28.74 E-value=1.6e+02 Score=25.32 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=27.6
Q ss_pred hccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 137 INHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 137 ~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
+.+..+++..+.....+...+- +-.|.+..|+.++||.+++.
T Consensus 193 l~~~gV~i~~~~~v~~i~~~~~--~~~v~~~~g~~i~~D~vI~a 234 (377)
T PRK04965 193 LTEMGVHLLLKSQLQGLEKTDS--GIRATLDSGRSIEVDAVIAA 234 (377)
T ss_pred HHhCCCEEEECCeEEEEEccCC--EEEEEEcCCcEEECCEEEEC
Confidence 4444567776666666654321 12366788999999999875
No 91
>PRK14898 DNA-directed RNA polymerase subunit A''; Provisional
Probab=28.63 E-value=58 Score=32.24 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=24.8
Q ss_pred ccceEEECCEEEEEecccCccCcEEEecC
Q psy5837 140 RSVDVIRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 140 ~~~~VlR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
..+.|.+||++..++.++|.+||.|-+-.
T Consensus 169 H~~~v~~~g~~~~~~a~~l~~GD~i~~~~ 197 (858)
T PRK14898 169 HSFVTRKDNEVIPVEGSELKIGDWLPVVR 197 (858)
T ss_pred CeEEEeeCCeEEEeeHHhCCCCCEEeeee
Confidence 45678899999999999999999986644
No 92
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=28.20 E-value=45 Score=17.30 Aligned_cols=14 Identities=43% Similarity=0.800 Sum_probs=11.6
Q ss_pred CccCcEEEecCCCE
Q psy5837 158 LKVGDIVKVYNNSF 171 (181)
Q Consensus 158 LvvGDIV~L~~Gd~ 171 (181)
+.+||.|++..|..
T Consensus 2 ~~~G~~V~I~~G~~ 15 (28)
T smart00739 2 FEVGDTVRVIAGPF 15 (28)
T ss_pred CCCCCEEEEeECCC
Confidence 57899999988864
No 93
>cd06541 ASCH ASC-1 homology or ASCH domain, a small beta-barrel domain found in all three kingdoms of life. ASCH resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation. The domain has been named after the ASC-1 protein, the activating signal cointegrator 1 or thyroid hormone receptor interactor protein 4 (TRIP4). ASC-1 is conserved in many eukaryotes and has been suggested to participate in a protein complex that interacts with RNA. It has been shown that ASC-1 mediates the interaction between various transciption factors and the basal transcriptional machinery.
Probab=28.16 E-value=61 Score=23.14 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=17.9
Q ss_pred ccCccCcEEEecCCCEec-CcEEEe
Q psy5837 156 KDLKVGDIVKVYNNSFFP-GDLMVL 179 (181)
Q Consensus 156 ~dLvvGDIV~L~~Gd~vP-AD~~LL 179 (181)
..++|||.+.+..|+ -| |.+.+.
T Consensus 29 ~~~k~Gd~~i~~~~~-~~~~~i~v~ 52 (105)
T cd06541 29 QLPKAGDYLIILDGQ-QPLAIAEVV 52 (105)
T ss_pred cCCCCCCEEEEecCC-CcEEEEEEE
Confidence 569999999999998 55 455544
No 94
>PRK06788 flagellar motor switch protein; Validated
Probab=28.14 E-value=20 Score=26.88 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=16.6
Q ss_pred cccCccCcEEEecCCCEecCcEE
Q psy5837 155 WKDLKVGDIVKVYNNSFFPGDLM 177 (181)
Q Consensus 155 ~~dLvvGDIV~L~~Gd~vPAD~~ 177 (181)
.-+|.+||+|.|...-.=|.|+.
T Consensus 52 lL~L~vGDVI~Ldk~~~dpv~v~ 74 (119)
T PRK06788 52 VKQLKVGDVLEVEKNLGHKVDVY 74 (119)
T ss_pred HhCCCCCCEEEeCCcCCCCEEEE
Confidence 44788999999986555555554
No 95
>smart00532 LIGANc Ligase N family.
Probab=27.99 E-value=23 Score=32.24 Aligned_cols=22 Identities=32% Similarity=0.503 Sum_probs=18.5
Q ss_pred EecccCccCcEEEe-cCCCEecC
Q psy5837 153 EQWKDLKVGDIVKV-YNNSFFPG 174 (181)
Q Consensus 153 I~~~dLvvGDIV~L-~~Gd~vPA 174 (181)
|.-.+|.+||.|.+ ++||.||.
T Consensus 358 i~~~~i~iGd~V~V~raGdVIP~ 380 (441)
T smart00532 358 IEEKDIRIGDTVVVRKAGDVIPK 380 (441)
T ss_pred HHHcCCCCCCEEEEEECCCcCcc
Confidence 45689999999998 46999996
No 96
>PF01052 SpoA: Surface presentation of antigens (SPOA); InterPro: IPR001543 Proteins in this group are involved in a secretory pathway responsible for the surface presentation of invasion plasmid antigen needed for the entry of Salmonella and other species into mammalian cells [, ].They could play a role in preserving the translocation competence of the IPA antigens and are required for secretion of the three IPA proteins []. The C-terminal region of flagellar motor switch proteins FliN and FliM is also included in this entry. ; PDB: 3UEP_A 1O9Y_B 1YAB_A.
Probab=27.44 E-value=44 Score=22.21 Aligned_cols=14 Identities=36% Similarity=0.631 Sum_probs=8.4
Q ss_pred ccCccCcEEEecCC
Q psy5837 156 KDLKVGDIVKVYNN 169 (181)
Q Consensus 156 ~dLvvGDIV~L~~G 169 (181)
.++.+||++.+...
T Consensus 27 ~~L~~Gdvi~l~~~ 40 (77)
T PF01052_consen 27 LNLKVGDVIPLDKP 40 (77)
T ss_dssp HC--TT-EEEECCE
T ss_pred hcCCCCCEEEeCCC
Confidence 46778888888776
No 97
>PRK15175 Vi polysaccharide export protein VexA; Provisional
Probab=27.35 E-value=75 Score=28.14 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=22.5
Q ss_pred cccceEEECCEEEEEeccc----------CccCcEEEecC
Q psy5837 139 HRSVDVIRNGMIYVEQWKD----------LKVGDIVKVYN 168 (181)
Q Consensus 139 ~~~~~VlR~g~~~~I~~~d----------LvvGDIV~L~~ 168 (181)
...+++.|+|+...++..| |.+||+|.+..
T Consensus 197 ~~~V~l~R~~~~~~i~l~dL~~~~~~ni~L~~GDvI~V~~ 236 (355)
T PRK15175 197 MMEVHVTRQQHYFTARLSDIYQYPGLDIALQPDDRITLRQ 236 (355)
T ss_pred ccEEEEEECCEEEEEEHHHHhhCCcCCcEeCCCCEEEEcc
Confidence 3578999999988876655 45778777765
No 98
>KOG3378|consensus
Probab=27.10 E-value=49 Score=28.80 Aligned_cols=31 Identities=39% Similarity=0.472 Sum_probs=19.9
Q ss_pred ccccceEEE--CCEEEEEecccCccCcEEEecC
Q psy5837 138 NHRSVDVIR--NGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 138 n~~~~~VlR--~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
|.-...|.| .|...+---++++|||+|.+.+
T Consensus 215 N~~R~sVr~~A~G~VS~~~H~~~KVGD~v~~S~ 247 (385)
T KOG3378|consen 215 NQFRISVRRVAGGVVSNFVHDNLKVGDIVGVSP 247 (385)
T ss_pred cceeEEEeehhchhhHHHhhccccccceeeccC
Confidence 333444444 3444444468999999999975
No 99
>COG2323 Predicted membrane protein [Function unknown]
Probab=26.95 E-value=3.5e+02 Score=22.39 Aligned_cols=21 Identities=19% Similarity=0.192 Sum_probs=15.2
Q ss_pred HHhhhhhccccceEEECCEEE
Q psy5837 131 HLADGEINHRSVDVIRNGMIY 151 (181)
Q Consensus 131 ~k~d~~~n~~~~~VlR~g~~~ 151 (181)
.+..+-++...+.+++||+..
T Consensus 84 ~~~r~~l~G~P~vlI~nGki~ 104 (224)
T COG2323 84 RKLRKLLEGKPTVLIENGKID 104 (224)
T ss_pred HHHHHhhcCCCEEEEeCCeEc
Confidence 344556777889999999753
No 100
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=25.74 E-value=2.3e+02 Score=25.19 Aligned_cols=39 Identities=18% Similarity=0.189 Sum_probs=27.8
Q ss_pred hhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 136 EINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 136 ~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
.+.+..+++..+....++. ++.|.+..|+.++||.+++.
T Consensus 198 ~l~~~gI~i~~~~~v~~i~------~~~v~~~~g~~~~~D~vl~a 236 (438)
T PRK13512 198 ELDKREIPYRLNEEIDAIN------GNEVTFKSGKVEHYDMIIEG 236 (438)
T ss_pred HHHhcCCEEEECCeEEEEe------CCEEEECCCCEEEeCEEEEC
Confidence 3445567777777766664 34577788999999998874
No 101
>KOG4628|consensus
Probab=25.65 E-value=2.5e+02 Score=24.97 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=24.4
Q ss_pred hhhccccceEEECCE------EEEEecccCccCcEEEe
Q psy5837 135 GEINHRSVDVIRNGM------IYVEQWKDLKVGDIVKV 166 (181)
Q Consensus 135 ~~~n~~~~~VlR~g~------~~~I~~~dLvvGDIV~L 166 (181)
+.+.+..+.++.+|. ..-|.-+|-.+||.|++
T Consensus 210 ~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRi 247 (348)
T KOG4628|consen 210 RLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRI 247 (348)
T ss_pred HHHhhCCcEEeccccccCCCceEEEeecccccCCeeeE
Confidence 345567788887764 34688899999999987
No 102
>PLN00051 RNA-binding S4 domain-containing protein; Provisional
Probab=25.28 E-value=1e+02 Score=26.13 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=32.7
Q ss_pred HHHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEec-CCC
Q psy5837 127 DIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVY-NNS 170 (181)
Q Consensus 127 d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~-~Gd 170 (181)
...|.++...+.+..|+ -||...+-+...+.+||+|.++ -|-
T Consensus 203 ~~SRsk~~~lI~~g~V~--vN~~~v~~~s~~v~~gD~isiRG~GR 245 (267)
T PLN00051 203 RMSRSKLVDLISSGDVR--VNWREVTKNGTTLKTGDVVSVSGKGR 245 (267)
T ss_pred ccCHHHHHHHHHcCcEE--ECCEEcCCCCCCCCCCCEEEEeeCCE
Confidence 46677777777777665 4788888889999999999998 443
No 103
>PF00877 NLPC_P60: NlpC/P60 family; InterPro: IPR000064 The Escherichia coli NLPC/Listeria P60 domain occurs at the C terminus of a number of different bacterial and viral proteins. The viral proteins are either described as tail assembly proteins or Gp19. In bacteria, the proteins are variously described as being putative tail component of prophage, invasin, invasion associated protein, putative lipoprotein, cell wall hydrolase, or putative endopeptidase. The E. coli NLPC/Listeria P60 domain is contained within the boundaries of the cysteine peptidase domain that defines the MEROPS peptidase family C40 (clan C-). A type example being dipeptidyl-peptidase VI from Bacillus sphaericus and gamma-glutamyl-diamino acid-endopeptidase precursor from Lactococcus lactis 3.4.19.11 from EC. This group also contains proteins classified as non-peptidase homologues in that they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases in the C40 family. ; PDB: 3PVQ_B 3GT2_A 3NPF_B 2K1G_A 3I86_A 3S0Q_A 2XIV_A 3PBC_A 3NE0_A 3M1U_B ....
Probab=25.24 E-value=51 Score=23.04 Aligned_cols=21 Identities=19% Similarity=0.273 Sum_probs=16.4
Q ss_pred CEEEEEecccCccCcEEEecC
Q psy5837 148 GMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 148 g~~~~I~~~dLvvGDIV~L~~ 168 (181)
+....++.+++.|||+|....
T Consensus 42 ~~~~~~~~~~~~pGDlif~~~ 62 (105)
T PF00877_consen 42 GFQKRVPISELQPGDLIFFKG 62 (105)
T ss_dssp SEEEHEEGGG-TTTEEEEEEG
T ss_pred ccccccchhcCCcccEEEEeC
Confidence 344468899999999999887
No 104
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=25.20 E-value=1.3e+02 Score=25.04 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=17.6
Q ss_pred cccceEEECCEEEEEecccCccCcEEEecCCCEe
Q psy5837 139 HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFF 172 (181)
Q Consensus 139 ~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~v 172 (181)
...|+|.-||..+.++ +|..|.|.+||.|
T Consensus 136 ~~~v~V~~DG~~~t~~-----aG~~l~L~PGESi 164 (225)
T PF07385_consen 136 DTDVTVPVDGIRRTVP-----AGTQLRLNPGESI 164 (225)
T ss_dssp SS-EEEEETTEEEEE------TT-EEEE-TT-EE
T ss_pred CCCeEEecCCcEEEec-----CCceEEeCCCCeE
Confidence 4568888888877665 4777777777765
No 105
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=24.97 E-value=41 Score=32.34 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.0
Q ss_pred EecccCccCcEEEec-CCCEecCc
Q psy5837 153 EQWKDLKVGDIVKVY-NNSFFPGD 175 (181)
Q Consensus 153 I~~~dLvvGDIV~L~-~Gd~vPAD 175 (181)
|.-.||.+||-|.++ +||.||-=
T Consensus 363 I~rkdIrIGDtV~V~kAGdVIP~V 386 (667)
T COG0272 363 IKRKDIRIGDTVVVRKAGDVIPQV 386 (667)
T ss_pred HHhcCCCCCCEEEEEecCCCCcce
Confidence 446899999999985 59999963
No 106
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=24.82 E-value=2.3e+02 Score=28.17 Aligned_cols=23 Identities=22% Similarity=-0.008 Sum_probs=16.9
Q ss_pred CCEEEEEecccCccCcEEEecCC
Q psy5837 147 NGMIYVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 147 ~g~~~~I~~~dLvvGDIV~L~~G 169 (181)
=|....+...|.+|.|.+.++..
T Consensus 93 ~GDiv~l~~Gd~IPaD~~ll~~~ 115 (917)
T TIGR01116 93 PGDIVELAVGDKVPADIRVLSLK 115 (917)
T ss_pred CCCEEEECCCCEeeccEEEEEec
Confidence 46777777888888887777653
No 107
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=24.71 E-value=30 Score=33.22 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=18.4
Q ss_pred EecccCccCcEEEec-CCCEecC
Q psy5837 153 EQWKDLKVGDIVKVY-NNSFFPG 174 (181)
Q Consensus 153 I~~~dLvvGDIV~L~-~Gd~vPA 174 (181)
|.-.+|.+||.|.+. +||.||.
T Consensus 360 I~~~di~iGD~V~V~raGdVIP~ 382 (669)
T PRK14350 360 IDSIGLNVGDVVKISRRGDVIPA 382 (669)
T ss_pred HHHcCCCCCCEEEEEecCCCCCc
Confidence 456899999999985 5999995
No 108
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=24.69 E-value=2.2e+02 Score=24.81 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=26.0
Q ss_pred ccccceEEECCEEEEEecccCccCc--EEEecCCCEecCcEEEee
Q psy5837 138 NHRSVDVIRNGMIYVEQWKDLKVGD--IVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 138 n~~~~~VlR~g~~~~I~~~dLvvGD--IV~L~~Gd~vPAD~~LL~ 180 (181)
.+..++++.+.....+.. |+ .|.+..|+.++||.+++.
T Consensus 197 ~~~GV~i~~~~~V~~i~~-----~~~~~v~l~~g~~i~aD~Vv~a 236 (396)
T PRK09754 197 QQAGVRILLNNAIEHVVD-----GEKVELTLQSGETLQADVVIYG 236 (396)
T ss_pred HHCCCEEEeCCeeEEEEc-----CCEEEEEECCCCEEECCEEEEC
Confidence 344577776666666543 23 356788999999999874
No 109
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=24.68 E-value=60 Score=27.36 Aligned_cols=32 Identities=31% Similarity=0.313 Sum_probs=21.2
Q ss_pred ceEEE--CCEEEEEecccCccCcEEEecC--CCEec
Q psy5837 142 VDVIR--NGMIYVEQWKDLKVGDIVKVYN--NSFFP 173 (181)
Q Consensus 142 ~~VlR--~g~~~~I~~~dLvvGDIV~L~~--Gd~vP 173 (181)
+.|.| +|..-.---.+|+|||.|.+.. |+.+.
T Consensus 70 isVk~~~~G~~S~~Lh~~lk~Gd~l~v~~P~G~F~l 105 (266)
T COG1018 70 ISVKREDGGGGSNWLHDHLKVGDTLEVSAPAGDFVL 105 (266)
T ss_pred EEEEEeCCCcccHHHHhcCCCCCEEEEecCCCCccC
Confidence 34444 3555555556999999999965 66643
No 110
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=23.98 E-value=31 Score=33.09 Aligned_cols=22 Identities=32% Similarity=0.552 Sum_probs=18.3
Q ss_pred EecccCccCcEEEec-CCCEecC
Q psy5837 153 EQWKDLKVGDIVKVY-NNSFFPG 174 (181)
Q Consensus 153 I~~~dLvvGDIV~L~-~Gd~vPA 174 (181)
|...+|.+||.|.+. +||.||-
T Consensus 363 i~~~~i~iGD~V~V~raGdVIP~ 385 (665)
T PRK07956 363 IERKDIRIGDTVVVRRAGDVIPE 385 (665)
T ss_pred HHHcCCCCCCEEEEEECCCccce
Confidence 446799999999985 5999995
No 111
>TIGR02480 fliN flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica.
Probab=23.90 E-value=26 Score=23.71 Aligned_cols=11 Identities=18% Similarity=0.456 Sum_probs=7.2
Q ss_pred cCccCcEEEec
Q psy5837 157 DLKVGDIVKVY 167 (181)
Q Consensus 157 dLvvGDIV~L~ 167 (181)
++.+||++.|.
T Consensus 28 ~L~~Gdvi~L~ 38 (77)
T TIGR02480 28 KLGEGSVIELD 38 (77)
T ss_pred cCCCCCEEEcC
Confidence 55677777665
No 112
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=23.57 E-value=32 Score=33.13 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=19.1
Q ss_pred EEecccCccCcEEEec-CCCEecC
Q psy5837 152 VEQWKDLKVGDIVKVY-NNSFFPG 174 (181)
Q Consensus 152 ~I~~~dLvvGDIV~L~-~Gd~vPA 174 (181)
.|...+|.+||.|.+. +||.||.
T Consensus 384 ~i~~~di~iGD~V~V~raGdVIPk 407 (689)
T PRK14351 384 EIEELGVNVGDRVRVKRAGDVIPY 407 (689)
T ss_pred HHHHcCCCCCCEEEEEecCCccce
Confidence 3557899999999985 6999995
No 113
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]
Probab=23.42 E-value=46 Score=22.95 Aligned_cols=15 Identities=27% Similarity=0.410 Sum_probs=11.5
Q ss_pred cCccCcEEEecCCCE
Q psy5837 157 DLKVGDIVKVYNNSF 171 (181)
Q Consensus 157 dLvvGDIV~L~~Gd~ 171 (181)
-|.+||+|.++.-+.
T Consensus 46 ~I~~GD~V~Ve~~~~ 60 (75)
T COG0361 46 RILPGDVVLVELSPY 60 (75)
T ss_pred EeCCCCEEEEEeccc
Confidence 478999999976443
No 114
>cd06552 ASCH_yqfb_like ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=23.31 E-value=1.1e+02 Score=21.15 Aligned_cols=23 Identities=30% Similarity=0.442 Sum_probs=17.7
Q ss_pred ccCccCcEEEecCCCEecCcEEE
Q psy5837 156 KDLKVGDIVKVYNNSFFPGDLMV 178 (181)
Q Consensus 156 ~dLvvGDIV~L~~Gd~vPAD~~L 178 (181)
..+.|||++.+..++...+-+.+
T Consensus 27 ~~~~~Gd~~~~~~~~~~~~~~~v 49 (100)
T cd06552 27 SHLKPGDVVEVHTGERIFGEAEI 49 (100)
T ss_pred cCCCCCCEEEEEECCEEEEEEEE
Confidence 35899999999988866665554
No 115
>PRK00276 infA translation initiation factor IF-1; Validated
Probab=22.91 E-value=76 Score=21.16 Aligned_cols=10 Identities=40% Similarity=0.411 Sum_probs=9.4
Q ss_pred CccCcEEEec
Q psy5837 158 LKVGDIVKVY 167 (181)
Q Consensus 158 LvvGDIV~L~ 167 (181)
+.|||+|.++
T Consensus 47 i~vGD~V~ve 56 (72)
T PRK00276 47 ILPGDKVTVE 56 (72)
T ss_pred cCCCCEEEEE
Confidence 7899999998
No 116
>COG1873 Protein implicated in RNA metabolism, contains PRC-barrel domain [General function prediction only]
Probab=22.80 E-value=68 Score=22.49 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=18.2
Q ss_pred EEEEEecccCc-cCcEEEecCCC
Q psy5837 149 MIYVEQWKDLK-VGDIVKVYNNS 170 (181)
Q Consensus 149 ~~~~I~~~dLv-vGDIV~L~~Gd 170 (181)
+...|||+.++ +||+|.+....
T Consensus 58 ~~v~IP~~~V~aIGd~III~~~~ 80 (87)
T COG1873 58 KEVIVPYEYVKAIGDIIIIKDVP 80 (87)
T ss_pred cEEEEehhHeEEecCEEEEechH
Confidence 48899999886 99999998643
No 117
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.80 E-value=3.5e+02 Score=20.57 Aligned_cols=19 Identities=32% Similarity=0.309 Sum_probs=13.4
Q ss_pred EEEEecccCccCcEEEecC
Q psy5837 150 IYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 150 ~~~I~~~dLvvGDIV~L~~ 168 (181)
|.-..-+|+.+||.|.+..
T Consensus 111 Wra~~~~~l~~G~~V~Vv~ 129 (140)
T COG1585 111 WRARSDEDLPAGDRVEVVG 129 (140)
T ss_pred eEEecCCCCCCCCEEEEEE
Confidence 4434448888999998754
No 118
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=22.77 E-value=2.1e+02 Score=20.54 Aligned_cols=45 Identities=20% Similarity=0.301 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcccCCCCc-chhhHHHHHHHHHHHHHHHHHHHHH
Q psy5837 86 IFFLFIALLQQIPDVSPTGR-YTTLIPLILIMVVSGIKEIIEDIKR 130 (181)
Q Consensus 86 i~lL~iail~~i~~i~~~~~-~~~~~~l~~vl~i~~i~~~~~d~~~ 130 (181)
.+||+++++.++..+...+. .+.+..++-...+=++.|..|+.+|
T Consensus 36 ~~FL~~Gi~~~~~Sl~~~~~~~S~llgv~g~s~lWsI~ElfeQ~kR 81 (94)
T PF14898_consen 36 PIFLLAGIACIIASLFVSNVIWSALLGVLGFSCLWSIGELFEQEKR 81 (94)
T ss_pred HHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34555555554432211221 1223333333334445666655444
No 119
>PRK08097 ligB NAD-dependent DNA ligase LigB; Reviewed
Probab=22.70 E-value=48 Score=31.22 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=17.3
Q ss_pred ecccCccCcEEEe-cCCCEecC
Q psy5837 154 QWKDLKVGDIVKV-YNNSFFPG 174 (181)
Q Consensus 154 ~~~dLvvGDIV~L-~~Gd~vPA 174 (181)
.-.+|.+||.|.+ ++||.||.
T Consensus 356 ~~~~I~iGD~V~V~raGdVIP~ 377 (562)
T PRK08097 356 QQWDIAPGDQVLVSLAGQGIPR 377 (562)
T ss_pred HHcCCCCCCEEEEEecCCCCcc
Confidence 4678999998777 56999996
No 120
>TIGR03028 EpsE polysaccharide export protein EpsE. Sequences in this family of proteins are members of a polysaccharide export protein family (pfam02563) which includes the wza protein from E.coli. This family of proteins are homologous to the EpsE protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=22.62 E-value=1e+02 Score=25.29 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=19.4
Q ss_pred ccccceEEE---CCEEEE--Eecc-cCccCcEEEecC
Q psy5837 138 NHRSVDVIR---NGMIYV--EQWK-DLKVGDIVKVYN 168 (181)
Q Consensus 138 n~~~~~VlR---~g~~~~--I~~~-dLvvGDIV~L~~ 168 (181)
+..++.++| +|..+. +... .|.+||+|++.+
T Consensus 200 ~~~~v~i~R~~~~g~~~~~~~~~~~~l~~gDii~V~~ 236 (239)
T TIGR03028 200 TERGIRVMRRDDKGAVEEVSGELGDLVQPDDVIYVRE 236 (239)
T ss_pred CcceEEEEEECCCCcEEEEecCCCcccCCCCEEEEeC
Confidence 345677876 344333 3333 388999999875
No 121
>PF02814 UreE_N: UreE urease accessory protein, N-terminal domain; InterPro: IPR004029 Urease and other nickel metalloenzymes are synthesised as precursors devoid of the metalloenzyme active site. These precursors then undergo a complex post-translational maturation process that requires a number of accessory proteins. Members of this group are nickel-binding proteins required for urease metallocentre assembly []. They are believed to function as metallochaperones to deliver nickel to urease apoprotein [, ]. It has been shown by yeast two-hybrid analysis that UreE forms a dimeric complex with UreG in Helicobacter pylori []. The UreDFG-apoenzyme complex has also been shown to exist [, ] and is believed to be, with the addition of UreE, the assembly system for active urease []. The complexes, rather than the individual proteins, presumably bind to UreB via UreE/H recognition sites. The structure of Klebsiella aerogenes UreE reveals a unique two-domain architecture.The N-terminal domain is structurally related to a heat shock protein, while the C-terminal domain shows homology to the Atx1 copper metallochaperone [, ]. Significantly, the metal-binding sites in UreE and Atx1 are distinct in location and types of residues despite the relationship between these proteins and the mechanism for UreE activation of urease is proposed to be different from the thiol ligand exchange mechanism used by the copper metallochaperones. The N-terminal domain is termed the peptide-binding domain. Deletion of this domain does not eliminate enzymatic activity, and the truncated protein can still activate urease [].; GO: 0016151 nickel ion binding, 0006461 protein complex assembly, 0019627 urea metabolic process; PDB: 3NXZ_B 3TJA_B 3LA0_B 3TJ9_B 3NY0_A 3L9Z_A 3TJ8_A 1EAR_A 1EB0_A 1GMU_B ....
Probab=22.55 E-value=58 Score=21.19 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=15.5
Q ss_pred CCEEEEEec---ccCccCcEEEecCCCEe
Q psy5837 147 NGMIYVEQW---KDLKVGDIVKVYNNSFF 172 (181)
Q Consensus 147 ~g~~~~I~~---~dLvvGDIV~L~~Gd~v 172 (181)
+|...-+.- ..|..||++....|..|
T Consensus 37 ~G~ei~i~L~r~~~L~~GDvL~~d~g~~I 65 (65)
T PF02814_consen 37 DGREIGIDLPRGTVLRDGDVLYLDDGRLI 65 (65)
T ss_dssp TS-EEEEE-SSTTT--TTEEEEECTSEEE
T ss_pred CCCEEEEECCCCcccCCCCEEEeCCCCCC
Confidence 565444332 34999999999998764
No 122
>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase. This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.
Probab=22.18 E-value=3.9e+02 Score=27.06 Aligned_cols=94 Identities=11% Similarity=0.132 Sum_probs=51.9
Q ss_pred HHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-----hcc-cc-----ceEE
Q psy5837 77 FEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHLADGE-----INH-RS-----VDVI 145 (181)
Q Consensus 77 ~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k~d~~-----~n~-~~-----~~Vl 145 (181)
|..+-+...++..++.++-.+....+......++.++++..+--..+-+..++..+.... +.+ .. ..=+
T Consensus 25 f~~~~N~yfl~i~ilq~ip~~s~~~~~t~~~pL~~v~~~~~~~~~~ed~~r~~~d~~~n~~~~~v~~~~~~~~~i~~~~l 104 (1057)
T TIGR01652 25 FKRFANLYFLVVALLQQVPILSPTYRGTSIVPLAFVLIVTAIKEAIEDIRRRRRDKEVNNRLTEVLEGHGQFVEIPWKDL 104 (1057)
T ss_pred HHHHhhHHHHHHHHHHcCCCcCCCCccHhHHhHHHHHHHHHHHHHHHHHHHHHhHHHHhCcEEEEECCCCcEEEeeeecc
Confidence 445555555555555444332223334444444555545455555566666665554321 111 11 2223
Q ss_pred ECCEEEEEecccCccCcEEEecCCC
Q psy5837 146 RNGMIYVEQWKDLKVGDIVKVYNNS 170 (181)
Q Consensus 146 R~g~~~~I~~~dLvvGDIV~L~~Gd 170 (181)
+-|....+...|.+|-|++.|+..+
T Consensus 105 ~~GDiv~l~~g~~iPaD~~ll~ss~ 129 (1057)
T TIGR01652 105 RVGDIVKVKKDERIPADLLLLSSSE 129 (1057)
T ss_pred cCCCEEEEcCCCcccceEEEEeccC
Confidence 5688899999999999999997543
No 123
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=22.13 E-value=35 Score=32.62 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.2
Q ss_pred EecccCccCcEEEec-CCCEecC
Q psy5837 153 EQWKDLKVGDIVKVY-NNSFFPG 174 (181)
Q Consensus 153 I~~~dLvvGDIV~L~-~Gd~vPA 174 (181)
|.-.+|.+||.|.+. +||.||.
T Consensus 351 i~~~~i~iGD~V~V~raGdVIP~ 373 (652)
T TIGR00575 351 IEELDIRIGDTVVVRKAGDVIPK 373 (652)
T ss_pred HHHcCCCCCCEEEEEecCCcCce
Confidence 446799999999985 5999995
No 124
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=21.99 E-value=3.2e+02 Score=19.89 Aligned_cols=23 Identities=17% Similarity=-0.006 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Q psy5837 117 VVSGIKEIIEDIKRHLADGEINH 139 (181)
Q Consensus 117 ~i~~i~~~~~d~~~~k~d~~~n~ 139 (181)
++..+.-+..-.+.++.-+++|+
T Consensus 112 ~IYliIw~~~y~~~k~~i~kiN~ 134 (136)
T PF11457_consen 112 IIYLIIWLIFYLYWKKDIKKINE 134 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444445555566765
No 125
>PF08605 Rad9_Rad53_bind: Fungal Rad9-like Rad53-binding; InterPro: IPR013914 In Saccharomyces cerevisiae (Baker s yeast), the Rad9 is a key adaptor protein in DNA damage checkpoint pathways. DNA damage induces Rad9 phosphorylation, and Rad53 specifically associates with this region of Rad9, when phosphorylated, via the Rad53 IPR000253 from INTERPRO domain []. There is no clear higher eukaryotic ortholog to Rad9.
Probab=21.85 E-value=57 Score=24.80 Aligned_cols=16 Identities=44% Similarity=0.717 Sum_probs=13.2
Q ss_pred EecccCccCcEEEecC
Q psy5837 153 EQWKDLKVGDIVKVYN 168 (181)
Q Consensus 153 I~~~dLvvGDIV~L~~ 168 (181)
+..-||++||.|++..
T Consensus 55 v~~LDlRIGD~Vkv~~ 70 (131)
T PF08605_consen 55 VKYLDLRIGDTVKVDG 70 (131)
T ss_pred EeeeeeecCCEEEECC
Confidence 4456889999999987
No 126
>PRK10839 16S rRNA pseudouridylate synthase A; Provisional
Probab=21.51 E-value=1.8e+02 Score=23.50 Aligned_cols=36 Identities=22% Similarity=0.114 Sum_probs=24.3
Q ss_pred HHHhhhhhccccceEEECCEEEEEecccCccCcEEEec
Q psy5837 130 RHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVY 167 (181)
Q Consensus 130 ~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~ 167 (181)
+.+..+.+....+. -||+....+...+..||.|.+.
T Consensus 15 r~~~~~li~~g~V~--VNg~~~~~~~~~l~~gd~I~l~ 50 (232)
T PRK10839 15 RAIAGRELRANRVT--VDGEIVKNGAFKLLPEHDVAYD 50 (232)
T ss_pred HHHHHHHHHcCeEE--ECCEEeccCCcCcCCCCEEEEC
Confidence 33444444444444 5888766677889999999987
No 127
>PF12969 DUF3857: Domain of Unknown Function with PDB structure (DUF3857); InterPro: IPR024618 This domain is based on the first domain of the PDB structure 3KD4 (residues 1-228). It is structurally similar to domains in other hydrolases, eg. M1 family aminopeptidase, despite lack of any significant sequence similarity. The domain is N-terminal to a transglutaminase domain, which is found in many proteins known to have transglutaminase activity. The function of this domain is unknown. ; PDB: 3KD4_A.
Probab=21.04 E-value=94 Score=23.43 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=11.2
Q ss_pred CCEEEEEecccCccCcEEEec
Q psy5837 147 NGMIYVEQWKDLKVGDIVKVY 167 (181)
Q Consensus 147 ~g~~~~I~~~dLvvGDIV~L~ 167 (181)
+.+...+.-.+|.+||+|.+.
T Consensus 79 ~~~~~~~~~p~v~~GdiIe~~ 99 (177)
T PF12969_consen 79 DSRTKVFAFPDVRVGDIIEYS 99 (177)
T ss_dssp T-EEEEEE--S--TT-EEEEE
T ss_pred CcEEEEEEcCCCCCCcEEEEE
Confidence 345566888899999999874
No 128
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=20.80 E-value=4.9e+02 Score=25.92 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEECCEEEEEeccc--CccCcEEEecCCCEecCcEEEee
Q psy5837 111 PLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKD--LKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 111 ~l~~vl~i~~i~~~~~d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~d--LvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
-.++++++..+..++..++.+++.+.+..-+-.+- . ...+-... -.-|....+...|.+|-|+++++
T Consensus 113 ~~~iI~~~v~l~~~i~~~qe~~a~~a~~~L~~l~~--~-~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~ 181 (903)
T PRK15122 113 GVIIILTMVLLSGLLRFWQEFRSNKAAEALKAMVR--T-TATVLRRGHAGAEPVRREIPMRELVPGDIVHLS 181 (903)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--C-ceEEEECCccCCCCeEEEEEHHHCCCCCEEEEC
Confidence 34455566667777777888888887777553221 1 12222211 01146777888888888888875
No 129
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=20.49 E-value=79 Score=24.78 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=5.8
Q ss_pred HHHHHhhhhhcc
Q psy5837 128 IKRHLADGEINH 139 (181)
Q Consensus 128 ~~~~k~d~~~n~ 139 (181)
.+++|+...+++
T Consensus 54 sRKkKaaAAi~e 65 (189)
T PF05568_consen 54 SRKKKAAAAIEE 65 (189)
T ss_pred hhhHHHHhhhhh
Confidence 344454455554
No 130
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=20.18 E-value=1.2e+02 Score=30.11 Aligned_cols=22 Identities=18% Similarity=0.158 Sum_probs=11.5
Q ss_pred CEEEEEecccCccCcEEEecCC
Q psy5837 148 GMIYVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 148 g~~~~I~~~dLvvGDIV~L~~G 169 (181)
|....+...|.+|.|...|+..
T Consensus 161 GDiV~l~~gd~vPAD~rLl~~~ 182 (917)
T COG0474 161 GDIVLLEAGDVVPADLRLLESS 182 (917)
T ss_pred CcEEEECCCCccccceEEEEec
Confidence 4455555555555555555443
No 131
>COG1372 Intein/homing endonuclease [DNA replication, recombination, and repair]
Probab=20.03 E-value=89 Score=26.42 Aligned_cols=29 Identities=31% Similarity=0.236 Sum_probs=24.8
Q ss_pred CCEEEEEecccCccCcEEEecCCCEecCc
Q psy5837 147 NGMIYVEQWKDLKVGDIVKVYNNSFFPGD 175 (181)
Q Consensus 147 ~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD 175 (181)
+|....+..++|.+||.|.+......|.+
T Consensus 88 ~~~~~~~~a~~lk~GD~i~~~~~~~~~~~ 116 (420)
T COG1372 88 NGELGWVKAGELKEGDRIAVPRRLPGPED 116 (420)
T ss_pred CCeEEEEEhhhcccCCEeecccccCCccc
Confidence 78899999999999999999887666544
Done!