Query psy5837
Match_columns 181
No_of_seqs 256 out of 1425
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 19:19:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5837.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5837hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ixz_A Potassium-transporting 99.9 8.9E-22 3.1E-26 189.8 11.6 126 53-181 82-218 (1034)
2 1mhs_A Proton pump, plasma mem 99.8 1.2E-20 4E-25 180.2 11.0 120 53-181 97-219 (920)
3 3ar4_A Sarcoplasmic/endoplasmi 99.8 1.8E-20 6.2E-25 180.0 11.0 125 52-179 33-167 (995)
4 2zxe_A Na, K-ATPase alpha subu 99.8 6.9E-21 2.4E-25 183.6 8.0 126 53-181 77-213 (1028)
5 3b8c_A ATPase 2, plasma membra 99.7 2.8E-20 9.7E-25 177.1 -6.2 126 52-181 41-171 (885)
6 2hc8_A PACS, cation-transporti 99.3 4.2E-12 1.4E-16 93.2 6.8 49 133-181 5-53 (113)
7 3j08_A COPA, copper-exporting 99.2 1.5E-11 5.2E-16 113.5 9.4 65 117-181 104-174 (645)
8 3j09_A COPA, copper-exporting 99.2 2.4E-11 8.4E-16 113.4 10.4 66 116-181 181-252 (723)
9 3rfu_A Copper efflux ATPase; a 99.1 4.4E-11 1.5E-15 112.1 5.1 67 114-180 193-266 (736)
10 2kij_A Copper-transporting ATP 99.1 1.5E-10 5.1E-15 86.2 5.6 47 135-181 13-65 (124)
11 2jmz_A Hypothetical protein MJ 85.8 0.83 2.8E-05 35.1 4.3 36 140-175 103-138 (186)
12 2lcj_A PAB POLC intein; hydrol 81.5 1.9 6.6E-05 32.9 4.7 34 139-172 92-125 (185)
13 2crv_A IF-2MT, translation ini 56.6 8.3 0.00028 27.9 3.0 22 154-175 85-107 (120)
14 1d1n_A Initiation factor 2; be 56.0 6.4 0.00022 27.5 2.2 20 154-173 78-97 (99)
15 2k1g_A Lipoprotein SPR; soluti 53.3 5.8 0.0002 29.1 1.8 20 151-170 61-80 (135)
16 1at0_A 17-hedgehog; developmen 52.1 11 0.00039 27.5 3.2 22 148-169 82-103 (145)
17 3bbn_D Ribosomal protein S4; s 50.3 8 0.00027 30.4 2.2 35 132-168 106-140 (201)
18 2cw8_A Endonuclease PI-pkoii; 41.6 25 0.00086 31.2 4.3 29 140-168 96-124 (537)
19 3h8l_A NADH oxidase; membrane 41.6 33 0.0011 28.4 4.9 35 140-180 231-265 (409)
20 2jyx_A Lipoprotein SPR; soluti 40.9 12 0.00042 27.0 1.9 20 151-170 61-80 (136)
21 1dm9_A Hypothetical 15.5 KD pr 40.3 24 0.00081 25.5 3.3 35 133-170 27-61 (133)
22 2vqe_D 30S ribosomal protein S 39.4 19 0.00066 28.1 2.9 37 130-168 114-150 (209)
23 3db3_A E3 ubiquitin-protein li 39.0 9.4 0.00032 29.0 0.9 25 146-170 81-105 (161)
24 1c05_A Ribosomal protein S4 de 39.0 22 0.00075 26.5 3.0 37 130-168 66-102 (159)
25 3fbs_A Oxidoreductase; structu 36.8 52 0.0018 25.2 5.1 36 139-180 186-221 (297)
26 4e2u_A PHO RADA intein; HINT-f 36.0 26 0.00089 26.0 3.0 27 142-169 99-125 (168)
27 3p42_A Predicted protein; beta 35.6 28 0.00094 27.7 3.3 33 138-170 164-204 (236)
28 3lxd_A FAD-dependent pyridine 35.1 86 0.0029 25.9 6.5 38 140-180 207-246 (415)
29 2z1c_A Hydrogenase expression/ 34.7 62 0.0021 21.2 4.4 31 140-170 15-48 (75)
30 3gt2_A Putative uncharacterize 34.7 18 0.00063 26.2 2.0 17 152-168 84-100 (142)
31 2gqw_A Ferredoxin reductase; f 34.2 82 0.0028 26.2 6.2 36 139-180 199-234 (408)
32 2k75_A Uncharacterized protein 33.8 23 0.00077 24.5 2.2 22 148-169 49-71 (106)
33 3ics_A Coenzyme A-disulfide re 32.6 68 0.0023 28.1 5.6 38 139-180 240-277 (588)
34 3ne0_A Resuscitation promoting 32.4 23 0.00077 28.0 2.2 19 151-169 152-170 (214)
35 2e6z_A Transcription elongatio 32.0 25 0.00084 21.8 1.9 19 156-174 6-24 (59)
36 3pbi_A Invasion protein; pepti 31.9 21 0.00071 28.1 2.0 19 151-169 152-170 (214)
37 3jxo_A TRKA-N domain protein; 31.6 42 0.0015 21.4 3.2 25 142-167 44-70 (86)
38 3sgi_A DNA ligase; HET: DNA AM 31.6 13 0.00043 34.1 0.7 22 153-174 374-396 (615)
39 4eqs_A Coenzyme A disulfide re 31.5 75 0.0026 26.8 5.6 36 139-180 200-235 (437)
40 2j58_A WZA, outer membrane lip 30.8 34 0.0012 28.8 3.3 31 139-169 190-232 (359)
41 3ef6_A Toluene 1,2-dioxygenase 29.9 92 0.0032 25.8 5.8 39 140-180 198-236 (410)
42 3fg2_P Putative rubredoxin red 29.9 91 0.0031 25.7 5.8 38 140-180 197-236 (404)
43 3d0f_A Penicillin-binding 1 tr 29.4 42 0.0014 22.9 3.0 29 140-168 47-94 (106)
44 2cqj_A BRMS2, U3 small nucleol 29.1 8.3 0.00028 25.0 -0.7 42 130-173 23-66 (71)
45 3gwf_A Cyclohexanone monooxyge 28.4 97 0.0033 27.1 5.9 39 137-181 340-380 (540)
46 2z0t_A Putative uncharacterize 27.9 17 0.0006 25.6 0.8 22 154-176 30-51 (109)
47 1mhs_A Proton pump, plasma mem 27.8 2.1E+02 0.0073 27.1 8.5 67 108-181 140-206 (920)
48 2fhd_A RAD9 homolog, DNA repai 27.2 26 0.00087 26.3 1.6 15 153-167 59-73 (153)
49 2in0_A Endonuclease PI-MTUI; h 27.1 38 0.0013 24.0 2.5 19 152-170 81-99 (139)
50 3j20_D 30S ribosomal protein S 24.9 18 0.00063 27.8 0.4 40 131-172 119-160 (180)
51 3ixz_A Potassium-transporting 24.3 49 0.0017 31.7 3.4 62 112-180 143-204 (1034)
52 3uox_A Otemo; baeyer-villiger 23.0 1.3E+02 0.0045 26.3 5.7 19 162-181 369-387 (545)
53 1o9y_A HRCQ2; secretory protei 22.8 39 0.0013 22.3 1.7 13 156-168 34-46 (84)
54 1xhc_A NADH oxidase /nitrite r 22.2 81 0.0028 25.9 4.0 35 139-180 195-229 (367)
55 3iwa_A FAD-dependent pyridine 22.1 1.2E+02 0.0041 25.6 5.1 39 139-180 214-253 (472)
56 4ap3_A Steroid monooxygenase; 22.0 1.2E+02 0.004 26.7 5.2 19 162-181 374-392 (549)
57 2kbn_A Conserved protein; nucl 22.0 42 0.0014 23.1 1.8 23 148-170 46-73 (109)
58 2owo_A DNA ligase; protein-DNA 22.0 17 0.00058 33.6 -0.3 22 153-174 364-386 (671)
59 4glx_A DNA ligase; inhibitor, 21.9 24 0.00082 32.0 0.7 21 154-174 365-386 (586)
60 3r8n_D 30S ribosomal protein S 21.6 13 0.00046 29.2 -1.0 38 130-169 110-147 (205)
61 1dgs_A DNA ligase; AMP complex 21.5 29 0.00098 32.0 1.1 22 153-174 362-384 (667)
62 2hbw_A NLP/P60 protein; NLP/P6 21.3 53 0.0018 26.0 2.5 19 151-169 154-172 (235)
63 3o0h_A Glutathione reductase; 21.2 1.3E+02 0.0044 25.5 5.2 38 141-180 246-283 (484)
64 2k6p_A Uncharacterized protein 20.9 47 0.0016 21.8 1.9 24 144-168 28-51 (92)
65 1m6i_A Programmed cell death p 20.9 1.5E+02 0.0051 25.3 5.6 41 138-180 237-277 (493)
66 3aqy_A Beta-1,3-glucan-binding 20.8 67 0.0023 22.4 2.7 21 146-166 56-77 (106)
67 1am2_A MXE GYRA intein; protei 20.3 1.2E+02 0.004 23.0 4.3 28 141-168 77-108 (199)
68 1te7_A Hypothetical UPF0267 pr 20.3 60 0.0021 22.1 2.3 23 157-179 32-56 (103)
No 1
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=99.86 E-value=8.9e-22 Score=189.83 Aligned_cols=126 Identities=18% Similarity=0.183 Sum_probs=105.8
Q ss_pred cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhccc---C-----CCCcchhhHHHHHHHHHHHHHHH
Q psy5837 53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDV---S-----PTGRYTTLIPLILIMVVSGIKEI 124 (181)
Q Consensus 53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i---~-----~~~~~~~~~~l~~vl~i~~i~~~ 124 (181)
+++||+|+++..+.+++ ++.|++||.++++++++++++++++... . ..+.+...++++++++++++.++
T Consensus 82 l~~~G~N~l~~~~~~~~---~~~~~~q~~~~~~~il~~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~ 158 (1034)
T 3ixz_A 82 LLRDGPNALRPPRGTPE---YVKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNLYLALALIAVVVVTGCFGY 158 (1034)
T ss_pred HHhhCCCCCCCCCCCCH---HHHHHHHHhChHHHHHHHHHHHHHHHHHHhhccCCCccccchhhhhhhheeeeHHHHHHH
Confidence 57899999999887764 3678999999999999998888876421 0 11234556777888899999999
Q ss_pred HHHHHHHHhhhhhc---cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 125 IEDIKRHLADGEIN---HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 125 ~~d~~~~k~d~~~n---~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+||++++++.++++ ..+++|+|||++++|+++||||||||.|++||.||||++|+++
T Consensus 159 ~qe~ka~~al~~L~~l~~~~a~ViRdG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~ 218 (1034)
T 3ixz_A 159 YQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQA 218 (1034)
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEECCEEEEEEHHHCCCCcEEEEcCCceecCCeEEEEe
Confidence 99999998876655 4689999999999999999999999999999999999999974
No 2
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=99.83 E-value=1.2e-20 Score=180.22 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=102.1
Q ss_pred cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy5837 53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTGRYTTLIPLILIMVVSGIKEIIEDIKRHL 132 (181)
Q Consensus 53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~~~~~~~~l~~vl~i~~i~~~~~d~~~~k 132 (181)
+++||.|+++++++++| ..|++||.++++++++++++++++. +.|.....++++++++++.+++|+++..+
T Consensus 97 ~~~~G~N~l~~~~~~~~----~~~l~~f~~~~~~ll~~aai~s~~~-----g~~~~~~~i~~vv~i~~~i~~~qe~~a~~ 167 (920)
T 1mhs_A 97 RRKYGLNQMKEEKENHF----LKFLGFFVGPIQFVMEGAAVLAAGL-----EDWVDFGVICGLLLLNAVVGFVQEFQAGS 167 (920)
T ss_dssp HHHTSSSSCCCCCCSSH----HHHTHHHHHHHHHHHHHHHHHCTTC-----SCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCccCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999998887754 4678999999999888888888774 23444556667778899999999999988
Q ss_pred hhhhhc---cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 133 ADGEIN---HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 133 ~d~~~n---~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+.++++ ..+++|+|||++++|+++||||||||.|++||+||||++|+++
T Consensus 168 a~~~L~~l~~~~a~V~RdG~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ll~g 219 (920)
T 1mhs_A 168 IVDELKKTLALKAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTD 219 (920)
T ss_dssp HHHTTTTCCCSSCEEECSSSEEECCTTTSCTTSEEEECTTCBCSSEEEEEEE
T ss_pred HHHHhhccCCCEEEEEECCEEEEEEHHHcCCCCEEEeCCCCccccceEEEec
Confidence 877665 4689999999999999999999999999999999999999963
No 3
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Probab=99.82 E-value=1.8e-20 Score=180.04 Aligned_cols=125 Identities=19% Similarity=0.229 Sum_probs=100.8
Q ss_pred ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCCCC-----cchhhHHHHHHHHHHHHHHHHH
Q psy5837 52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSPTG-----RYTTLIPLILIMVVSGIKEIIE 126 (181)
Q Consensus 52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~~~-----~~~~~~~l~~vl~i~~i~~~~~ 126 (181)
.+++||.|+++++|++++ ++.|++||+++++++|++++++++++++...+ .+...+.++++++++++.++++
T Consensus 33 r~~~~G~N~l~~~~~~~~---~~~~~~qf~~~~~~~l~~~a~~s~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~q 109 (995)
T 3ar4_A 33 HLEKYGHNELPAEEGKSL---WELVIEQFEDLLVRILLLAACISFVLAWFEEGEETITAFVEPFVILLILIANAIVGVWQ 109 (995)
T ss_dssp HHHHHCCSSCCCCCCCCH---HHHHHGGGCSHHHHHHHHHHHHHHHHTTSCCSSGGGSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCccCCCCCCcH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhhHHHhHHhhHHHHHHHHHHHHH
Confidence 367899999999877654 37899999999999999999999987654321 2333455556677888889998
Q ss_pred HHHHHHhh---hhhccccceEEECCE--EEEEecccCccCcEEEecCCCEecCcEEEe
Q psy5837 127 DIKRHLAD---GEINHRSVDVIRNGM--IYVEQWKDLKVGDIVKVYNNSFFPGDLMVL 179 (181)
Q Consensus 127 d~~~~k~d---~~~n~~~~~VlR~g~--~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL 179 (181)
|++..++. ++++..+++|+|||. .++|+++||||||||.|++||+||||++|+
T Consensus 110 e~~a~~al~~L~~~~~~~a~V~R~g~~~~~~I~~~~lv~GDiV~l~~Gd~IPaD~~ll 167 (995)
T 3ar4_A 110 ERNAENAIEALKEYEPEMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRIL 167 (995)
T ss_dssp HHHCCCHHHHHGGGSCSEEEEEBTTCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEE
T ss_pred HHHHHHHHHHHHccCCCeEEEEeCCCceEEEEEHHHCCCCCEEEECCCCcccccEEEE
Confidence 88755543 345567899999887 699999999999999999999999999995
No 4
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A
Probab=99.82 E-value=6.9e-21 Score=183.60 Aligned_cols=126 Identities=17% Similarity=0.111 Sum_probs=103.4
Q ss_pred cccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhccc-C---C----CCcchhhHHHHHHHHHHHHHHH
Q psy5837 53 SCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDV-S---P----TGRYTTLIPLILIMVVSGIKEI 124 (181)
Q Consensus 53 ~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i-~---~----~~~~~~~~~l~~vl~i~~i~~~ 124 (181)
+++||+|+++.++..++ ++.|++||.++++++|+++++++++... . . .+.+...++++++++++++.++
T Consensus 77 ~~~~G~N~l~~~~~~~~---~~~~~~~~~~~~~~iL~~aa~ls~~~~~~~~~~~~~~~~~~~~~~~~i~~vv~i~~~~~~ 153 (1028)
T 2zxe_A 77 LARDGPNSLTPPPTTPE---WIKFCRQLFGGFSILLWIGAILCFLAYGIQAATEDEPANDNLYLGVVLSTVVIVTGCFSY 153 (1028)
T ss_dssp HHHHCCSCCCCCCCCCH---HHHHHTTTTSTHHHHHHHHHHHHHHHHHHHHHSSCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCCCCCCH---HHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 57899999999876554 3678999999999999999999876521 0 0 0123456677788899999999
Q ss_pred HHHHHHHHhhhhh---ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 125 IEDIKRHLADGEI---NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 125 ~~d~~~~k~d~~~---n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+||++..++.+++ ...+|+|+|||++++|+++||||||||.|++||.||||++|+++
T Consensus 154 ~qe~ka~~~~~~L~~l~~~~a~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g 213 (1028)
T 2zxe_A 154 YQEAKSSRIMDSFKNMVPQQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISA 213 (1028)
T ss_dssp HHTCCCCCHHHHHHTTSCSEEEEEETTEEEEEEGGGCCTTCEEEEETTCBCCSEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCeeEEEECCEEEEEEHHHCCcCCEEEECCCCEeeceEEEEee
Confidence 9998776665544 45789999999999999999999999999999999999999974
No 5
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Probab=99.73 E-value=2.8e-20 Score=177.06 Aligned_cols=126 Identities=17% Similarity=0.187 Sum_probs=100.9
Q ss_pred ccccccCCccccCcCcccchhhHHHHHHccchHHHHHHHHHHHHHhcccCC--CCcchhhHHHHHHHHHHHHHHHHHHHH
Q psy5837 52 QSCKFVGNKISTAKYSLVTFFPCFLFEQFRRYSNIFFLFIALLQQIPDVSP--TGRYTTLIPLILIMVVSGIKEIIEDIK 129 (181)
Q Consensus 52 ~~~~yg~N~i~~~k~~~~~fl~~~l~~qf~~~~ni~lL~iail~~i~~i~~--~~~~~~~~~l~~vl~i~~i~~~~~d~~ 129 (181)
.+++||.|+++.+++++| +.|++||.++++++|+++++++++.+... ...|...+.++++++++++.+++|+++
T Consensus 41 r~~~~G~N~l~~~~~~~~----~~~l~~~~~p~~~il~~aaiis~~l~~~~~~~~~~~~~~~I~~~v~i~~~l~~~qe~k 116 (885)
T 3b8c_A 41 RIQIFGPNKLEEKKESKL----LKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENN 116 (885)
T ss_dssp HSSSCCSCCTTTTCCCTT----SSTTSCCCGGGSSHHHHHHHGGGGSSCCTTSCSCCTTHHHHHHHTTTTTTTTTTTTTT
T ss_pred HHHhcCCCccCCCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999887665 34678999999999999999988764211 113344456666677888889999887
Q ss_pred HHHhhhhh---ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 130 RHLADGEI---NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 130 ~~k~d~~~---n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
..++.+++ ...+++|+|||++++|+++||||||||.|++||+||||++|+++
T Consensus 117 a~~al~~L~~~~~~~a~V~RdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~ll~g 171 (885)
T 3b8c_A 117 AGNAAAALMAGLAPKTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEG 171 (885)
T ss_dssp TTTHHHHTTTSCSCCCCCCCSSCSCCCCTTTTCTTSBCCCCSSCCCSSCCCCCCS
T ss_pred HHHHHHHHhccCCCeEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeceEEEEc
Confidence 76665543 45789999999999999999999999999999999999999874
No 6
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=99.30 E-value=4.2e-12 Score=93.21 Aligned_cols=49 Identities=27% Similarity=0.287 Sum_probs=44.3
Q ss_pred hhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 133 ADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 133 ~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+...+....++|+|+|+++++++++|+|||+|.+++||.||||++++++
T Consensus 5 ~L~~l~p~~a~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iPaDg~v~~g 53 (113)
T 2hc8_A 5 KLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEG 53 (113)
T ss_dssp HHHHHSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEEC
T ss_pred HHhcCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEc
Confidence 3445667889999999999999999999999999999999999999874
No 7
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.25 E-value=1.5e-11 Score=113.50 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhh------ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 117 VVSGIKEIIEDIKRHLADGEI------NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 117 ~i~~i~~~~~d~~~~k~d~~~------n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
++..+..++|++.++|+++.+ ...+++|+|||++++|+++||+|||+|.+++||.||||+++++.
T Consensus 104 ~~~~ig~~le~~~~~~~~~~l~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G 174 (645)
T 3j08_A 104 AFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEG 174 (645)
T ss_dssp HHHHHHHHHHHHHHCCCCCCCHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEEC
Confidence 344566788888887765433 34689999999999999999999999999999999999999863
No 8
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}
Probab=99.24 E-value=2.4e-11 Score=113.38 Aligned_cols=66 Identities=23% Similarity=0.270 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhh------ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 116 MVVSGIKEIIEDIKRHLADGEI------NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 116 l~i~~i~~~~~d~~~~k~d~~~------n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
+++..+..++|++.++|+++.+ ...+++|+|||++++|+++||+|||+|.+++||.||||+++++.
T Consensus 181 ~~~~~ig~~le~~~~~~~~~~i~~l~~l~~~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G 252 (723)
T 3j09_A 181 LAFLLLGRTLEARAKSRTGEAIKKLVGLQAKTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEG 252 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTHHHHHTSCSEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEEC
Confidence 3444566788888888765543 34679999999999999999999999999999999999999863
No 9
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}
Probab=99.10 E-value=4.4e-11 Score=112.06 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc------cccceEEE-CCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 114 LIMVVSGIKEIIEDIKRHLADGEIN------HRSVDVIR-NGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 114 ~vl~i~~i~~~~~d~~~~k~d~~~n------~~~~~VlR-~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
+++++..+..++|.+.++|+.+.++ ..+++|+| ||++++|+++||+|||+|.+++||.||||+++++
T Consensus 193 ~ii~~~llg~~le~~a~~~~~~ai~~L~~l~p~~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~ 266 (736)
T 3rfu_A 193 VITTLVLLGQVLELKAREQTGSAIRALLKLVPESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQE 266 (736)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSHHHHHTCCCCCEEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCEEEEEEHhhCCCCCEEEECCCCcccccEEEEE
Confidence 3344555667778888777655443 46788888 9999999999999999999999999999999986
No 10
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=86.19 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=41.1
Q ss_pred hhhccccceEEECCE------EEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 135 GEINHRSVDVIRNGM------IYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 135 ~~~n~~~~~VlR~g~------~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
..+....++|+|+|. +++|+.++|+|||+|.|++||.||||++|++.
T Consensus 13 ~~l~p~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~G~~iPaDg~vi~g 65 (124)
T 2kij_A 13 ISLQATEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEG 65 (124)
T ss_dssp HHTCCSEEEEEECSSSTTCCEEEEEETTTCCTTCEEECCTTCBCSSCEEECSC
T ss_pred hccCCCEEEEEECCCCCceeEEEEEeHHHCCCCCEEEECCCCEEEeeEEEEEc
Confidence 345567899999764 78999999999999999999999999999863
No 11
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=85.79 E-value=0.83 Score=35.07 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=30.2
Q ss_pred ccceEEECCEEEEEecccCccCcEEEecCCCEecCc
Q psy5837 140 RSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGD 175 (181)
Q Consensus 140 ~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD 175 (181)
....+.++|+...++++||.+||.|.+..|..++.|
T Consensus 103 Hp~~v~~~g~~~w~~A~eLk~GD~v~~~~~~~~~~~ 138 (186)
T 2jmz_A 103 HPVYISKTGEVLEINAEMVKVGDYIYIPKNNTINLD 138 (186)
T ss_dssp CEEEEEETTEEEEEEGGGCCTTSEEEEECSSSEEEE
T ss_pred CEEEEeCCCeEEEEEhhcCCCCCEEEecccCCccce
Confidence 457777899999999999999999999887666654
No 12
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=81.55 E-value=1.9 Score=32.94 Aligned_cols=34 Identities=26% Similarity=0.245 Sum_probs=28.3
Q ss_pred cccceEEECCEEEEEecccCccCcEEEecCCCEe
Q psy5837 139 HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFF 172 (181)
Q Consensus 139 ~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~v 172 (181)
+....+.++|+...+++.+|.+||.|.+..++.-
T Consensus 92 ~H~~~v~~~g~~~~~~A~eLk~GD~v~v~~~~~~ 125 (185)
T 2lcj_A 92 DHPVLVYENGRFIEKRAFEVKEGDKVLVSELELV 125 (185)
T ss_dssp SSEEEEEETTEEEEEEGGGCCTTCEEEECCCCCS
T ss_pred CCEEEEecCCeEEEEEHHHCCCCCEEEEcccccc
Confidence 3456777899999999999999999999875543
No 13
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.62 E-value=8.3 Score=27.91 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=17.3
Q ss_pred ecc-cCccCcEEEecCCCEecCc
Q psy5837 154 QWK-DLKVGDIVKVYNNSFFPGD 175 (181)
Q Consensus 154 ~~~-dLvvGDIV~L~~Gd~vPAD 175 (181)
.+. |+.+||+|....=..+|..
T Consensus 85 ~fniDik~GDiIE~ye~~ev~r~ 107 (120)
T 2crv_A 85 EEKVEFKPGDQVICYEENKVPTK 107 (120)
T ss_dssp CTTSCCCTTEEEEEECCSCCCCC
T ss_pred cCCCCCCCCCEEEEEEEEEEeeE
Confidence 478 9999999998776666654
No 14
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=56.01 E-value=6.4 Score=27.54 Aligned_cols=20 Identities=25% Similarity=0.547 Sum_probs=15.6
Q ss_pred ecccCccCcEEEecCCCEec
Q psy5837 154 QWKDLKVGDIVKVYNNSFFP 173 (181)
Q Consensus 154 ~~~dLvvGDIV~L~~Gd~vP 173 (181)
.+.|+.+||+|....=..+|
T Consensus 78 ~~~dik~GD~Ie~ye~~ev~ 97 (99)
T 1d1n_A 78 NFNDIKEGDVIEAYVMQEVA 97 (99)
T ss_dssp TCSSCSSCSEEEEECCSCCC
T ss_pred CcCCCCCCCEEEEEEEEEEc
Confidence 47899999999877655554
No 15
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=53.35 E-value=5.8 Score=29.05 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=16.1
Q ss_pred EEEecccCccCcEEEecCCC
Q psy5837 151 YVEQWKDLKVGDIVKVYNNS 170 (181)
Q Consensus 151 ~~I~~~dLvvGDIV~L~~Gd 170 (181)
+.|+.++++|||+|....|.
T Consensus 61 ~~V~~~~l~pGDLvFf~~~~ 80 (135)
T 2k1g_A 61 KSVSRSNLRTGDLVLFRAGS 80 (135)
T ss_dssp EEECGGGCCTTEEEEEEETT
T ss_pred cEecHHHccCCcEEEECCCC
Confidence 35788999999999987543
No 16
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=52.14 E-value=11 Score=27.47 Aligned_cols=22 Identities=9% Similarity=-0.074 Sum_probs=19.7
Q ss_pred CEEEEEecccCccCcEEEecCC
Q psy5837 148 GMIYVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 148 g~~~~I~~~dLvvGDIV~L~~G 169 (181)
|....+.+++|++||.|.+..|
T Consensus 82 ~~~~~v~A~~l~~GD~v~~~~~ 103 (145)
T 1at0_A 82 QKLTFVFADRIEEKNQVLVRDV 103 (145)
T ss_dssp TEEEEEEGGGCCTTCEEEEECT
T ss_pred CcEEEEEHHHCcCCCEEEEecC
Confidence 5678899999999999999876
No 17
>3bbn_D Ribosomal protein S4; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=50.27 E-value=8 Score=30.36 Aligned_cols=35 Identities=29% Similarity=0.184 Sum_probs=26.5
Q ss_pred HhhhhhccccceEEECCEEEEEecccCccCcEEEecC
Q psy5837 132 LADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 132 k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
++.+-+++..+.| ||+...+++..+.+||+|.+..
T Consensus 106 ~ArqLI~~G~V~V--NG~~V~~pS~~V~~gD~I~V~~ 140 (201)
T 3bbn_D 106 GARQLVNHRHILV--NGRIVDIPSYRCKPQDTIMARD 140 (201)
T ss_dssp HHHHHHHTTCEEE--TTEECCCTTCBCCTTEEEEECS
T ss_pred HHHHHHhCCcEEe--CCEEEeecceecCCCCEEEEcc
Confidence 3444455555554 8999889999999999999964
No 18
>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis} PDB: 2cw7_A
Probab=41.58 E-value=25 Score=31.20 Aligned_cols=29 Identities=34% Similarity=0.409 Sum_probs=24.0
Q ss_pred ccceEEECCEEEEEecccCccCcEEEecC
Q psy5837 140 RSVDVIRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 140 ~~~~VlR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
..+.+.+||+...++..+|.+||.|.+-.
T Consensus 96 H~~l~~~~g~~~~~~a~elk~GD~v~~~~ 124 (537)
T 2cw8_A 96 HSLFSVRNGELVEVTGDELKPGDLVAVPR 124 (537)
T ss_dssp CEEEEEETTEEEEEETTTCCTTCEEEEES
T ss_pred ceEEEEECCEEEEEEhhcCCCCCEEEEee
Confidence 34556688999999999999999998743
No 19
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=41.57 E-value=33 Score=28.36 Aligned_cols=35 Identities=14% Similarity=0.132 Sum_probs=24.7
Q ss_pred ccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 140 RSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 140 ~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
..++++.+....++.-. -|.+..|+.++||.+++.
T Consensus 231 ~gV~~~~~~~v~~i~~~------~v~~~~g~~~~~D~vi~a 265 (409)
T 3h8l_A 231 LGIKLVHNFKIKEIREH------EIVDEKGNTIPADITILL 265 (409)
T ss_dssp HTCEEECSCCEEEECSS------EEEETTSCEEECSEEEEE
T ss_pred CCCEEEcCCceEEECCC------eEEECCCCEEeeeEEEEC
Confidence 34666666665555432 377888999999999875
No 20
>2jyx_A Lipoprotein SPR; solution structure, construct optimized, membrane, palmitate, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli K12} PDB: 2k1g_A
Probab=40.95 E-value=12 Score=26.97 Aligned_cols=20 Identities=25% Similarity=0.312 Sum_probs=16.1
Q ss_pred EEEecccCccCcEEEecCCC
Q psy5837 151 YVEQWKDLKVGDIVKVYNNS 170 (181)
Q Consensus 151 ~~I~~~dLvvGDIV~L~~Gd 170 (181)
..++.++++|||+|....|.
T Consensus 61 ~~v~~~~l~pGDLvff~~~~ 80 (136)
T 2jyx_A 61 KSVSRSNLRTGDLVLFRAGS 80 (136)
T ss_dssp EECCTTTCCTTEEEEEECSS
T ss_pred eEcchHhCCCCCEEEECCCC
Confidence 35677899999999987654
No 21
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=40.29 E-value=24 Score=25.50 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=23.4
Q ss_pred hhhhhccccceEEECCEEEEEecccCccCcEEEecCCC
Q psy5837 133 ADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNS 170 (181)
Q Consensus 133 ~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd 170 (181)
+.+.+.+..|+ -||+.. .++..|.+||.|.+.-++
T Consensus 27 a~~li~~G~V~--VNG~~v-k~s~~V~~GD~I~I~~~~ 61 (133)
T 1dm9_A 27 AREMIEGGKVH--YNGQRS-KPSKIVELNATLTLRQGN 61 (133)
T ss_dssp HHHHHHTTCEE--ETTEEC-CTTCBCCTTCEEEEEETT
T ss_pred HHHHHHCCcEE--ECCEEc-CCCCEeCCCCEEEEEeCC
Confidence 33444444444 588875 567789999999997543
No 22
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=39.44 E-value=19 Score=28.14 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=27.0
Q ss_pred HHHhhhhhccccceEEECCEEEEEecccCccCcEEEecC
Q psy5837 130 RHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 130 ~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
+.++.+.+++.. |.-||+....+...+.+||+|.+..
T Consensus 114 R~~arqLI~~G~--V~VNG~~v~~ps~~V~~gD~I~V~~ 150 (209)
T 2vqe_D 114 RRQARQLVRHGH--ITVNGRRVDLPSYRVRPGDEIAVAE 150 (209)
T ss_dssp HHHHHHHHHTTC--EEETTEECCCTTCBCCTTCEEEECG
T ss_pred HHHHHHHHHCCC--EEECCEEeCcCCcCcCCCCEEEEcC
Confidence 344445555555 4469998888899999999999863
No 23
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=39.03 E-value=9.4 Score=28.98 Aligned_cols=25 Identities=32% Similarity=0.602 Sum_probs=19.3
Q ss_pred ECCEEEEEecccCccCcEEEecCCC
Q psy5837 146 RNGMIYVEQWKDLKVGDIVKVYNNS 170 (181)
Q Consensus 146 R~g~~~~I~~~dLvvGDIV~L~~Gd 170 (181)
|--....++|.+|.||++|.+.-+-
T Consensus 81 RpRARt~l~w~~L~vGqvVMvNYN~ 105 (161)
T 3db3_A 81 RARARTIIKWQDLEVGQVVMLNYNP 105 (161)
T ss_dssp ECCCCCBCCGGGCCTTCEEEEEECS
T ss_pred ccceEEeccHHHCCcCcEEEEecCC
Confidence 3344567899999999999996553
No 24
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=39.02 E-value=22 Score=26.52 Aligned_cols=37 Identities=19% Similarity=0.206 Sum_probs=26.3
Q ss_pred HHHhhhhhccccceEEECCEEEEEecccCccCcEEEecC
Q psy5837 130 RHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 130 ~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
+.++.+.+.+.. |.-||+....+...+.+||+|.+..
T Consensus 66 R~~ar~lI~~G~--V~VNG~~v~~ps~~V~~gD~I~V~~ 102 (159)
T 1c05_A 66 RRQARQLVTHGH--ILVDGSRVNIPSYRVKPGQTIAVRE 102 (159)
T ss_dssp HHHHHHHHHTTC--EEETTEECCCSSCBCCTTCEEEECG
T ss_pred HHHHHHHHHCCC--EEECCEEeCcCCcEeCCCCEEEEeC
Confidence 334444455555 4458998878889999999999853
No 25
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=36.79 E-value=52 Score=25.19 Aligned_cols=36 Identities=14% Similarity=-0.091 Sum_probs=24.0
Q ss_pred cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 139 HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 139 ~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
...++++. ....++...+ -|.+..|+.++||.+++.
T Consensus 186 ~~gv~i~~-~~v~~i~~~~-----~v~~~~g~~~~~D~vi~a 221 (297)
T 3fbs_A 186 ARGVRVET-TRIREIAGHA-----DVVLADGRSIALAGLFTQ 221 (297)
T ss_dssp HTTCEEEC-SCEEEEETTE-----EEEETTSCEEEESEEEEC
T ss_pred HCCcEEEc-ceeeeeecCC-----eEEeCCCCEEEEEEEEEc
Confidence 34455553 4444444322 788899999999999875
No 26
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=35.95 E-value=26 Score=26.03 Aligned_cols=27 Identities=30% Similarity=0.369 Sum_probs=20.8
Q ss_pred ceEEECCEEEEEecccCccCcEEEecCC
Q psy5837 142 VDVIRNGMIYVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 142 ~~VlR~g~~~~I~~~dLvvGDIV~L~~G 169 (181)
..+.++|. ..+++.+|.+||.|.+..|
T Consensus 99 ~~~~~~~~-~w~~a~~L~~Gd~l~~~~g 125 (168)
T 4e2u_A 99 VLLFRDGL-QWVPAAEVKPGDVVVGVRN 125 (168)
T ss_dssp EEEESSSE-EEEEGGGCCTTCEEEEEET
T ss_pred EEEEcCCC-EEEEHHHCCCCCEEEeccC
Confidence 33444554 7788999999999999887
No 27
>3p42_A Predicted protein; beta-grAsp, unknown function; HET: MSE; 1.91A {Escherichia coli O127}
Probab=35.57 E-value=28 Score=27.72 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=24.1
Q ss_pred ccccceEEE-CCEEEEEec-------ccCccCcEEEecCCC
Q psy5837 138 NHRSVDVIR-NGMIYVEQW-------KDLKVGDIVKVYNNS 170 (181)
Q Consensus 138 n~~~~~VlR-~g~~~~I~~-------~dLvvGDIV~L~~Gd 170 (181)
+...+.|++ ||+....+. .++.|||.|.+--..
T Consensus 164 d~~~v~VI~~nG~v~~~~~a~Wn~~~~~l~PG~~I~Vp~~~ 204 (236)
T 3p42_A 164 DKNNVMVITPEGETVVAPVALWNKRHVEPPPGSQLWLGFSA 204 (236)
T ss_dssp CSSEEEEECTTSCEEEEECSSTTCCCEECCTTCEEEECBCT
T ss_pred CCccEEEEeCCCCEEeccccccccCCCCCCCCCEEEEeCCc
Confidence 345677775 898887763 379999999886543
No 28
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=35.06 E-value=86 Score=25.92 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=25.4
Q ss_pred ccceEEECCEEEEEecccCccCc--EEEecCCCEecCcEEEee
Q psy5837 140 RSVDVIRNGMIYVEQWKDLKVGD--IVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 140 ~~~~VlR~g~~~~I~~~dLvvGD--IV~L~~Gd~vPAD~~LL~ 180 (181)
..+++..+....++...+ |. -|.+..|+.++||.+++.
T Consensus 207 ~GV~i~~~~~v~~i~~~~---~~v~~v~l~dG~~i~aD~Vv~a 246 (415)
T 3lxd_A 207 HGVDLRTGAAMDCIEGDG---TKVTGVRMQDGSVIPADIVIVG 246 (415)
T ss_dssp TTCEEEETCCEEEEEESS---SBEEEEEESSSCEEECSEEEEC
T ss_pred CCCEEEECCEEEEEEecC---CcEEEEEeCCCCEEEcCEEEEC
Confidence 346666665555554332 22 377889999999999875
No 29
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=34.72 E-value=62 Score=21.17 Aligned_cols=31 Identities=26% Similarity=0.085 Sum_probs=24.2
Q ss_pred ccceEEECCEEEEEec---ccCccCcEEEecCCC
Q psy5837 140 RSVDVIRNGMIYVEQW---KDLKVGDIVKVYNNS 170 (181)
Q Consensus 140 ~~~~VlR~g~~~~I~~---~dLvvGDIV~L~~Gd 170 (181)
..++|=.+|..+++.. .+..|||-|.++.|-
T Consensus 15 ~~A~vd~~Gv~r~V~l~Lv~~~~vGD~VLVH~Gf 48 (75)
T 2z1c_A 15 PVAVVDFGGVKREVRLDLMPDTKPGDWVIVHTGF 48 (75)
T ss_dssp TEEEEEETTEEEEEECTTSTTCCTTCEEEEETTE
T ss_pred CEEEEEcCCEEEEEEEEEeCCCCCCCEEEEecch
Confidence 3466667898888874 478899999999884
No 30
>3gt2_A Putative uncharacterized protein; P60 domain, antigen, unknown function; HET: EDO; 1.75A {Mycobacterium avium subsp}
Probab=34.67 E-value=18 Score=26.21 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=14.4
Q ss_pred EEecccCccCcEEEecC
Q psy5837 152 VEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 152 ~I~~~dLvvGDIV~L~~ 168 (181)
.++.+++.+||+|....
T Consensus 84 ~v~~~~~~pGDlvff~~ 100 (142)
T 3gt2_A 84 KILPQQARKGDLIFYGP 100 (142)
T ss_dssp EECGGGCCTTCEEEESG
T ss_pred eechhhCCCCCEEEeCC
Confidence 56788999999998864
No 31
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=34.21 E-value=82 Score=26.16 Aligned_cols=36 Identities=14% Similarity=0.205 Sum_probs=26.4
Q ss_pred cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 139 HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 139 ~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
+..++++.+-...++. . +-|.+..|+.++||.+++.
T Consensus 199 ~~GV~i~~~~~v~~i~-~-----~~v~~~~g~~i~~D~vi~a 234 (408)
T 2gqw_A 199 AQGVDLRFERSVTGSV-D-----GVVLLDDGTRIAADMVVVG 234 (408)
T ss_dssp HTTCEEEESCCEEEEE-T-----TEEEETTSCEEECSEEEEC
T ss_pred HcCcEEEeCCEEEEEE-C-----CEEEECCCCEEEcCEEEEC
Confidence 3456777766666665 2 2778889999999999875
No 32
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=33.84 E-value=23 Score=24.47 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=17.5
Q ss_pred CEEEEEeccc-CccCcEEEecCC
Q psy5837 148 GMIYVEQWKD-LKVGDIVKVYNN 169 (181)
Q Consensus 148 g~~~~I~~~d-LvvGDIV~L~~G 169 (181)
|...-..|.+ +.+||+|+++.|
T Consensus 49 G~I~~tlW~~~l~~Gdvv~i~ng 71 (106)
T 2k75_A 49 ARIRISSFGKQLQDSDVVRIDNA 71 (106)
T ss_dssp CEEEEEEESSCCCTTEEEEEEEE
T ss_pred CeEEEEEEcCccCCCCEEEEEee
Confidence 5666677876 999999999865
No 33
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=32.57 E-value=68 Score=28.07 Aligned_cols=38 Identities=16% Similarity=0.356 Sum_probs=27.5
Q ss_pred cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 139 HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 139 ~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
...++++.+.....+... |+-|.+..|+.++||.+++.
T Consensus 240 ~~GV~i~~~~~v~~i~~~----~~~v~~~~g~~i~~D~Vi~a 277 (588)
T 3ics_A 240 NHDVELVFEDGVDALEEN----GAVVRLKSGSVIQTDMLILA 277 (588)
T ss_dssp HTTCEEECSCCEEEEEGG----GTEEEETTSCEEECSEEEEC
T ss_pred HcCCEEEECCeEEEEecC----CCEEEECCCCEEEcCEEEEc
Confidence 345666666666666543 35688899999999999875
No 34
>3ne0_A Resuscitation promoting factor interacting protei; cell WALL, peptidoglycan, hydrolase; 1.00A {Mycobacterium tuberculosis} PDB: 3pbc_A 3s0q_A 2xiv_A*
Probab=32.43 E-value=23 Score=27.96 Aligned_cols=19 Identities=16% Similarity=0.121 Sum_probs=15.3
Q ss_pred EEEecccCccCcEEEecCC
Q psy5837 151 YVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 151 ~~I~~~dLvvGDIV~L~~G 169 (181)
..|+.+++++||+|....|
T Consensus 152 ~~V~~~~lqpGDLvFf~~g 170 (214)
T 3ne0_A 152 RKIPSSQMRRGDVIFYGPN 170 (214)
T ss_dssp EEEEGGGCCTTCEEEESGG
T ss_pred ceechhhCCCCCEEEecCC
Confidence 4567899999999988643
No 35
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.04 E-value=25 Score=21.79 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.1
Q ss_pred ccCccCcEEEecCCCEecC
Q psy5837 156 KDLKVGDIVKVYNNSFFPG 174 (181)
Q Consensus 156 ~dLvvGDIV~L~~Gd~vPA 174 (181)
.++.+||.|.+..|..---
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~ 24 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINL 24 (59)
T ss_dssp SSCCTTSEEEECSSTTTTC
T ss_pred ccCCCCCEEEEeecCCCCC
Confidence 4688999999999976433
No 36
>3pbi_A Invasion protein; peptidoglycan hydrolase, extracellular, invasion related Pro cell WALL, NLPC-like module, hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 3i86_A
Probab=31.90 E-value=21 Score=28.13 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=15.4
Q ss_pred EEEecccCccCcEEEecCC
Q psy5837 151 YVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 151 ~~I~~~dLvvGDIV~L~~G 169 (181)
..++.+++++||+|....|
T Consensus 152 ~~V~~~~lqpGDLVff~~g 170 (214)
T 3pbi_A 152 RHVPPAEAKRGDLIFYGPG 170 (214)
T ss_dssp EEECGGGCCTTCEEEESGG
T ss_pred eeechhhCCCCCEEEecCC
Confidence 4578899999999988543
No 37
>3jxo_A TRKA-N domain protein; TRKA K+ channel component, structural genomics, PSI-2-2, Pro structure initiative, joint center for structural genomics; 1.55A {Thermotoga SP}
Probab=31.64 E-value=42 Score=21.37 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=17.2
Q ss_pred ceEEECCEEEEEecc--cCccCcEEEec
Q psy5837 142 VDVIRNGMIYVEQWK--DLKVGDIVKVY 167 (181)
Q Consensus 142 ~~VlR~g~~~~I~~~--dLvvGDIV~L~ 167 (181)
+.|.|+|+.. ++.. .|.+||++.+.
T Consensus 44 ~~I~R~~~~~-~p~~~~~l~~GD~l~v~ 70 (86)
T 3jxo_A 44 AAIVRGGVLV-VPRGDTEILSGDKLYVI 70 (86)
T ss_dssp EEEEETTEEE-CCCTTCBCCTTCEEEEE
T ss_pred EEEEECCEEE-CCCCCCEECCCCEEEEE
Confidence 4556888765 4543 57899998764
No 38
>3sgi_A DNA ligase; HET: DNA AMP; 3.50A {Mycobacterium tuberculosis}
Probab=31.64 E-value=13 Score=34.13 Aligned_cols=22 Identities=23% Similarity=0.404 Sum_probs=18.7
Q ss_pred EecccCccCcEEEecC-CCEecC
Q psy5837 153 EQWKDLKVGDIVKVYN-NSFFPG 174 (181)
Q Consensus 153 I~~~dLvvGDIV~L~~-Gd~vPA 174 (181)
|.-.||.+||.|.|+. ||.||-
T Consensus 374 i~~~di~iGD~V~V~rAGdVIP~ 396 (615)
T 3sgi_A 374 IKRKGVLIGDTVVIRKAGDVIPE 396 (615)
T ss_dssp TTTTCCCBTCEEEEECCSSSSCC
T ss_pred HHHcCCCCCCEEEEEEcCCCccc
Confidence 5678999999999965 999995
No 39
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=31.55 E-value=75 Score=26.82 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=26.1
Q ss_pred cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 139 HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 139 ~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
...++++.+.+...+. |+-|.++.|+.++||.+++.
T Consensus 200 ~~gV~i~~~~~v~~~~------~~~v~~~~g~~~~~D~vl~a 235 (437)
T 4eqs_A 200 KREIPYRLNEEINAIN------GNEITFKSGKVEHYDMIIEG 235 (437)
T ss_dssp HTTCCEEESCCEEEEE------TTEEEETTSCEEECSEEEEC
T ss_pred ccceEEEeccEEEEec------CCeeeecCCeEEeeeeEEEE
Confidence 3456666665555543 56688999999999999875
No 40
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A*
Probab=30.85 E-value=34 Score=28.80 Aligned_cols=31 Identities=29% Similarity=0.193 Sum_probs=23.7
Q ss_pred cccceEEECCEEEEEecc------------cCccCcEEEecCC
Q psy5837 139 HRSVDVIRNGMIYVEQWK------------DLKVGDIVKVYNN 169 (181)
Q Consensus 139 ~~~~~VlR~g~~~~I~~~------------dLvvGDIV~L~~G 169 (181)
...+.+.|+|+...++.. .|.+||+|++...
T Consensus 190 ~~~V~l~R~g~~~~idl~~ll~~g~~~~~~~L~~GD~I~Vp~~ 232 (359)
T 2j58_A 190 WRNVVLTHNGKDTKISLYALMQKGDLTQNHLLYHGDILFIPSN 232 (359)
T ss_dssp TTCEEEEETTEEEEECHHHHHTTCBGGGCCBCCTTCEEEECBG
T ss_pred cceEEEEECCeEEEEEHHHHhhcCCcccceeccCCCeEEEeec
Confidence 457889999998877643 3789999988754
No 41
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=29.91 E-value=92 Score=25.81 Aligned_cols=39 Identities=13% Similarity=-0.031 Sum_probs=26.2
Q ss_pred ccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 140 RSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 140 ~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
..+++..+....++...+ -.--|.+..|+.++||.+++.
T Consensus 198 ~GV~i~~~~~v~~i~~~~--~~~~v~~~dg~~i~aD~Vv~a 236 (410)
T 3ef6_A 198 LGVQVELGTGVVGFSGEG--QLEQVMASDGRSFVADSALIC 236 (410)
T ss_dssp HTCEEECSCCEEEEECSS--SCCEEEETTSCEEECSEEEEC
T ss_pred CCCEEEeCCEEEEEeccC--cEEEEEECCCCEEEcCEEEEe
Confidence 346666666666665443 112478889999999999875
No 42
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=29.89 E-value=91 Score=25.69 Aligned_cols=38 Identities=13% Similarity=0.068 Sum_probs=23.8
Q ss_pred ccceEEECCEEEEEecccCccCc--EEEecCCCEecCcEEEee
Q psy5837 140 RSVDVIRNGMIYVEQWKDLKVGD--IVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 140 ~~~~VlR~g~~~~I~~~dLvvGD--IV~L~~Gd~vPAD~~LL~ 180 (181)
..+++..+-...++...+ |. -|.+..|+.++||.+++.
T Consensus 197 ~GV~i~~~~~v~~i~~~~---~~v~~V~~~dG~~i~aD~Vv~a 236 (404)
T 3fg2_P 197 AGIRMHYGVRATEIAAEG---DRVTGVVLSDGNTLPCDLVVVG 236 (404)
T ss_dssp TTCEEECSCCEEEEEEET---TEEEEEEETTSCEEECSEEEEC
T ss_pred CCcEEEECCEEEEEEecC---CcEEEEEeCCCCEEEcCEEEEC
Confidence 345555554444444322 22 367788999999999875
No 43
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=29.36 E-value=42 Score=22.87 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=19.3
Q ss_pred ccceEEE-CCEEEEEec-------------cc-----CccCcEEEecC
Q psy5837 140 RSVDVIR-NGMIYVEQW-------------KD-----LKVGDIVKVYN 168 (181)
Q Consensus 140 ~~~~VlR-~g~~~~I~~-------------~d-----LvvGDIV~L~~ 168 (181)
..++|.. +|....+++ +. |.+||+|.++.
T Consensus 47 ~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~~ 94 (106)
T 3d0f_A 47 GAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVKK 94 (106)
T ss_dssp TEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEEE
T ss_pred CeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEEE
Confidence 3455554 656666665 22 77899999974
No 44
>2cqj_A BRMS2, U3 small nucleolar ribonucleoprotein protein IMP3 homolog; S4 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.08 E-value=8.3 Score=24.95 Aligned_cols=42 Identities=12% Similarity=-0.026 Sum_probs=31.1
Q ss_pred HHHhhhhhccccceEEECCEEEEEecccCcc--CcEEEecCCCEec
Q psy5837 130 RHLADGEINHRSVDVIRNGMIYVEQWKDLKV--GDIVKVYNNSFFP 173 (181)
Q Consensus 130 ~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvv--GDIV~L~~Gd~vP 173 (181)
+.++.+.+....+. -||+...++...+.+ +|.|.+..|..+.
T Consensus 23 R~~A~~lI~~G~V~--Vng~~v~kps~~V~~~~~d~I~~~~~~~~~ 66 (71)
T 2cqj_A 23 LQAAVAFVEQGHVR--VGPDVVTDPAFLVTRSMEDFVTWVDSSKIS 66 (71)
T ss_dssp HHHHHHHHHTTCEE--ETTBCCCCTTCEEEHHHHTTEEESCCSSSC
T ss_pred HHHHHHHHHCCcEE--ECCEEECCCCCCCCCCCCcEEEEECCceec
Confidence 34555666666555 489988889988888 8999888887654
No 45
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=28.37 E-value=97 Score=27.13 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=25.7
Q ss_pred hccccceEEE--CCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 137 INHRSVDVIR--NGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 137 ~n~~~~~VlR--~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
++...++++- +....++. ++=|.+..|+.+|||++|+.+
T Consensus 340 l~~~nV~lv~~~~~~I~~it------~~gv~~~dG~~~~~DvIV~AT 380 (540)
T 3gwf_A 340 YNRPNVEAVAIKENPIREVT------AKGVVTEDGVLHELDVLVFAT 380 (540)
T ss_dssp GGSTTEEEEETTTSCEEEEC------SSEEEETTCCEEECSEEEECC
T ss_pred hcCCCEEEEeCCCCCccEEe------cCeEEcCCCCEEECCEEEECC
Confidence 3445566652 34444443 245788999999999999864
No 46
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=27.94 E-value=17 Score=25.64 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=16.7
Q ss_pred ecccCccCcEEEecCCCEecCcE
Q psy5837 154 QWKDLKVGDIVKVYNNSFFPGDL 176 (181)
Q Consensus 154 ~~~dLvvGDIV~L~~Gd~vPAD~ 176 (181)
+.+.+.|||.|.+ +|+.+.+-+
T Consensus 30 k~~~ikvGD~I~f-~~~~l~~~V 51 (109)
T 2z0t_A 30 KRRQIKPGDIIIF-EGGKLKVKV 51 (109)
T ss_dssp TGGGCCTTCEEEE-GGGTEEEEE
T ss_pred hhhcCCCCCEEEE-CCCEEEEEE
Confidence 4678999999999 566666543
No 47
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Probab=27.79 E-value=2.1e+02 Score=27.15 Aligned_cols=67 Identities=10% Similarity=0.152 Sum_probs=47.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEeeC
Q psy5837 108 TLIPLILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 108 ~~~~l~~vl~i~~i~~~~~d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~S 181 (181)
.+.-..+++++..+...+.-++++++.+.+..-+-..- .. ..=++-|....+...|.+|-|++++..
T Consensus 140 ~~~~~~~i~~vv~i~~~i~~~qe~~a~~a~~~L~~l~~--~~-----a~V~RdG~~~~I~~~eLv~GDiV~l~~ 206 (920)
T 1mhs_A 140 DWVDFGVICGLLLLNAVVGFVQEFQAGSIVDELKKTLA--LK-----AVVLRDGTLKEIEAPEVVPGDILQVEE 206 (920)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCC--SS-----CEEECSSSEEECCTTTSCTTSEEEECT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--CE-----EEEEECCEEEEEEHHHcCCCCEEEeCC
Confidence 34556666667777778888999999998887654321 11 111235778899999999999999863
No 48
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=27.19 E-value=26 Score=26.31 Aligned_cols=15 Identities=33% Similarity=0.253 Sum_probs=12.9
Q ss_pred EecccCccCcEEEec
Q psy5837 153 EQWKDLKVGDIVKVY 167 (181)
Q Consensus 153 I~~~dLvvGDIV~L~ 167 (181)
++.-||++||+|++.
T Consensus 59 vk~LeLRiGD~VKVd 73 (153)
T 2fhd_A 59 IKRFFLKKGDVVQST 73 (153)
T ss_dssp EEESCCCTTCEEEET
T ss_pred ceeeeeecCCEEEEC
Confidence 556799999999997
No 49
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=27.11 E-value=38 Score=23.98 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.5
Q ss_pred EEecccCccCcEEEecCCC
Q psy5837 152 VEQWKDLKVGDIVKVYNNS 170 (181)
Q Consensus 152 ~I~~~dLvvGDIV~L~~Gd 170 (181)
.+++.+|.+||.|.+..|.
T Consensus 81 w~~a~~L~~Gd~v~~~~~~ 99 (139)
T 2in0_A 81 WRAAGELRKGDRVAVRDVE 99 (139)
T ss_dssp EEEGGGCCTTCEEEEECTT
T ss_pred cEEHHHCCCCCEEEeCCCc
Confidence 3678999999999998875
No 50
>3j20_D 30S ribosomal protein S4P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.85 E-value=18 Score=27.81 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=30.2
Q ss_pred HHhhhhhccccceEEECCEEEEEecccCccC--cEEEecCCCEe
Q psy5837 131 HLADGEINHRSVDVIRNGMIYVEQWKDLKVG--DIVKVYNNSFF 172 (181)
Q Consensus 131 ~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvG--DIV~L~~Gd~v 172 (181)
.++.+-+....|+| ||+....++..+.+| |.|.+..+..+
T Consensus 119 ~~Ar~LI~~G~V~V--Ng~~V~~Ps~~V~~~~eD~I~v~~~s~i 160 (180)
T 3j20_D 119 RQARQLIVHGHIEV--NGQIIRSPSYLVLKEEEDTITYARTSPF 160 (180)
T ss_dssp HHHHHHHHHTCCEE--SSSBCCCSSCCCCTGGGGCEECSSCSSS
T ss_pred HHHHHHHHcCCeEE--CCEEeCCCCcccCCCCCCEEEEeCCCcc
Confidence 34445556666665 899999999999999 99999776544
No 51
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=24.28 E-value=49 Score=31.73 Aligned_cols=62 Identities=13% Similarity=0.128 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 112 LILIMVVSGIKEIIEDIKRHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 112 l~~vl~i~~i~~~~~d~~~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
.++++++..+...+.-++.+|+.+.++..+-.+- .+ ..=++-|....+...|.+|-|+++|+
T Consensus 143 ~~~i~~vv~i~~~~~~~qe~ka~~al~~L~~l~~--~~-----a~ViRdG~~~~I~~~eLv~GDiV~l~ 204 (1034)
T 3ixz_A 143 ALALIAVVVVTGCFGYYQEFKSTNIIASFKNLVP--QQ-----ATVIRDGDKFQINADQLVVGDLVEMK 204 (1034)
T ss_pred hhhhheeeeHHHHHHHHHHHHHHHHHHHHhccCC--Ce-----eEEEECCEEEEEEHHHCCCCcEEEEc
Confidence 3344445566666777888888888877543221 11 11234588888888889999998875
No 52
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=22.95 E-value=1.3e+02 Score=26.32 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=15.6
Q ss_pred cEEEecCCCEecCcEEEeeC
Q psy5837 162 DIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 162 DIV~L~~Gd~vPAD~~LL~S 181 (181)
+=|.+..| .+|||++|+.+
T Consensus 369 ~gv~~~dG-~~~~D~IV~AT 387 (545)
T 3uox_A 369 EGIKTADA-AYDLDVIIYAT 387 (545)
T ss_dssp TEEEESSC-EEECSEEEECC
T ss_pred CeEEeCCC-eeecCEEEECC
Confidence 44678889 99999999864
No 53
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=22.85 E-value=39 Score=22.31 Aligned_cols=13 Identities=31% Similarity=0.578 Sum_probs=10.4
Q ss_pred ccCccCcEEEecC
Q psy5837 156 KDLKVGDIVKVYN 168 (181)
Q Consensus 156 ~dLvvGDIV~L~~ 168 (181)
-+|.+||++.|..
T Consensus 34 l~L~~GdVi~Ld~ 46 (84)
T 1o9y_A 34 RRLDAGTILEVTG 46 (84)
T ss_dssp HTCCTTCEEEECS
T ss_pred hcCCCCCEEEeCC
Confidence 4678999999985
No 54
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=22.18 E-value=81 Score=25.86 Aligned_cols=35 Identities=11% Similarity=0.133 Sum_probs=24.3
Q ss_pred cccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 139 HRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 139 ~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
+..++++.+-+..++. ++-|.++.|+ ++||.+++.
T Consensus 195 ~~gV~i~~~~~v~~i~------~~~v~~~~g~-i~~D~vi~a 229 (367)
T 1xhc_A 195 ETGVKFFLNSELLEAN------EEGVLTNSGF-IEGKVKICA 229 (367)
T ss_dssp HTTEEEECSCCEEEEC------SSEEEETTEE-EECSCEEEE
T ss_pred HCCCEEEcCCEEEEEE------eeEEEECCCE-EEcCEEEEC
Confidence 3456666665655554 3457788888 999999875
No 55
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=22.12 E-value=1.2e+02 Score=25.58 Aligned_cols=39 Identities=15% Similarity=0.241 Sum_probs=24.4
Q ss_pred cccceEEECCEEEEEecccCccCcE-EEecCCCEecCcEEEee
Q psy5837 139 HRSVDVIRNGMIYVEQWKDLKVGDI-VKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 139 ~~~~~VlR~g~~~~I~~~dLvvGDI-V~L~~Gd~vPAD~~LL~ 180 (181)
...+++..+-...++...+ |.+ |.+..|+.++||.+++.
T Consensus 214 ~~GV~i~~~~~v~~i~~~~---~~v~v~~~~g~~i~aD~Vv~a 253 (472)
T 3iwa_A 214 KNDVVVHTGEKVVRLEGEN---GKVARVITDKRTLDADLVILA 253 (472)
T ss_dssp HTTCEEECSCCEEEEEESS---SBEEEEEESSCEEECSEEEEC
T ss_pred hcCCEEEeCCEEEEEEccC---CeEEEEEeCCCEEEcCEEEEC
Confidence 3446666555555554422 111 56778999999999875
No 56
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=21.98 E-value=1.2e+02 Score=26.69 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=15.5
Q ss_pred cEEEecCCCEecCcEEEeeC
Q psy5837 162 DIVKVYNNSFFPGDLMVLST 181 (181)
Q Consensus 162 DIV~L~~Gd~vPAD~~LL~S 181 (181)
+=|.+..| .+|||++|+.+
T Consensus 374 ~gv~~~dG-~~~~D~iI~AT 392 (549)
T 4ap3_A 374 TGIVTTGA-HYDLDMIVLAT 392 (549)
T ss_dssp TEEEESSC-EEECSEEEECC
T ss_pred CcEEeCCC-ceecCEEEECC
Confidence 44778889 99999999864
No 57
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=21.98 E-value=42 Score=23.14 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=18.4
Q ss_pred CEEEEEecc-----cCccCcEEEecCCC
Q psy5837 148 GMIYVEQWK-----DLKVGDIVKVYNNS 170 (181)
Q Consensus 148 g~~~~I~~~-----dLvvGDIV~L~~Gd 170 (181)
|...-..|. ++.+||+|+++.|.
T Consensus 46 G~I~~t~W~~~~~~~~~~G~~V~i~n~~ 73 (109)
T 2kbn_A 46 GIIKFTIWKNAELPLLEQGESYLLRSVV 73 (109)
T ss_dssp CCEEEEEEGGGCCCCCCTTCEEEEEEEE
T ss_pred CeEEEEEECcccccccCCCCEEEEEEEE
Confidence 567777787 88999999998653
No 58
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=21.96 E-value=17 Score=33.57 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=17.8
Q ss_pred EecccCccCcEEEec-CCCEecC
Q psy5837 153 EQWKDLKVGDIVKVY-NNSFFPG 174 (181)
Q Consensus 153 I~~~dLvvGDIV~L~-~Gd~vPA 174 (181)
|.-.||.+||.|.|+ +||.||-
T Consensus 364 i~~~di~iGD~V~V~rAGdvIP~ 386 (671)
T 2owo_A 364 IERLGLRIGDKVVIRRAGDVIPQ 386 (671)
T ss_dssp HHHHTCCBTCEEEEEEETTTEEE
T ss_pred HHHcCCCCCCEEEEEECCCcccc
Confidence 456799999988885 5999993
No 59
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=21.92 E-value=24 Score=32.02 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.4
Q ss_pred ecccCccCcEEEec-CCCEecC
Q psy5837 154 QWKDLKVGDIVKVY-NNSFFPG 174 (181)
Q Consensus 154 ~~~dLvvGDIV~L~-~Gd~vPA 174 (181)
.-.||.+||.|.+. +||.||-
T Consensus 365 ~~~di~iGD~V~V~rAGdVIP~ 386 (586)
T 4glx_A 365 ERLGLRIGDKVVIRRAGDVIPQ 386 (586)
T ss_dssp HHHTCEETCEEEEEEETTTEEE
T ss_pred HhcCCCcCCEEEEEECCCcCcc
Confidence 35799999999985 5999993
No 60
>3r8n_D 30S ribosomal protein S4; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_D 1p87_D 2aw7_D 2avy_D 2i2u_D 2i2p_D* 2qan_D* 2qb9_D* 2qbb_D* 2qbd_D 2qbf_D 2qbh_D* 2qbj_D* 2qou_D* 2qow_D* 2qoy_D* 2qp0_D* 2vho_D 2vhp_D 2wwl_D* ...
Probab=21.57 E-value=13 Score=29.18 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=27.5
Q ss_pred HHHhhhhhccccceEEECCEEEEEecccCccCcEEEecCC
Q psy5837 130 RHLADGEINHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 130 ~~k~d~~~n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~G 169 (181)
+.++.+-+++..+. -||+...+++..+.+||+|.+...
T Consensus 110 R~~ArqLI~~G~V~--VNG~~V~~ps~~Vk~GD~I~V~~~ 147 (205)
T 3r8n_D 110 RAEARQLVSHKAIM--VNGRVVNIASYQVSPNDVVSIREK 147 (205)
T ss_dssp HHHHHHHHHTTCCB--SSSSBCCCTTCBCCTTBCCBCCSS
T ss_pred HHHHHHHHHCCCEE--ECCEEEccCCcCcCCCCEEEecCc
Confidence 34445555555554 488888889999999999988654
No 61
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=21.54 E-value=29 Score=32.04 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.7
Q ss_pred EecccCccCcEEEec-CCCEecC
Q psy5837 153 EQWKDLKVGDIVKVY-NNSFFPG 174 (181)
Q Consensus 153 I~~~dLvvGDIV~L~-~Gd~vPA 174 (181)
|.-.||.+||.|.|+ +||.||-
T Consensus 362 i~~~di~iGD~V~V~rAGdvIP~ 384 (667)
T 1dgs_A 362 IEELDIRIGDWVLVHKAGGVIPE 384 (667)
T ss_dssp HHHTTCBSSCEEEEEEETTTEEE
T ss_pred HHHcCCCCCCEEEEEECCCcchh
Confidence 356899999988885 5999994
No 62
>2hbw_A NLP/P60 protein; NLP/P60 family protein, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; HET: UNL; 1.05A {Anabaena variabilis} PDB: 2evr_A 2fg0_A
Probab=21.26 E-value=53 Score=26.01 Aligned_cols=19 Identities=21% Similarity=0.156 Sum_probs=15.5
Q ss_pred EEEecccCccCcEEEecCC
Q psy5837 151 YVEQWKDLKVGDIVKVYNN 169 (181)
Q Consensus 151 ~~I~~~dLvvGDIV~L~~G 169 (181)
+.|+.+++.|||+|....+
T Consensus 154 ~~v~~~~l~pGDLvff~~~ 172 (235)
T 2hbw_A 154 QAITIDELAPGDLVFFGTP 172 (235)
T ss_dssp EEECGGGCCTTCEEEEECS
T ss_pred ccccHhhCCCCCEEEECCC
Confidence 3567799999999998764
No 63
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=21.23 E-value=1.3e+02 Score=25.51 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=24.4
Q ss_pred cceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 141 SVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 141 ~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
.++++.+.....+...+=.+ .|.+..|+.++||.+++.
T Consensus 246 Gv~i~~~~~V~~i~~~~~~v--~v~~~~g~~i~aD~Vi~A 283 (484)
T 3o0h_A 246 GISIIYEATVSQVQSTENCY--NVVLTNGQTICADRVMLA 283 (484)
T ss_dssp TCEEESSCCEEEEEECSSSE--EEEETTSCEEEESEEEEC
T ss_pred CCEEEeCCEEEEEEeeCCEE--EEEECCCcEEEcCEEEEe
Confidence 45555555555554432111 567788899999999875
No 64
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=20.93 E-value=47 Score=21.81 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=18.1
Q ss_pred EEECCEEEEEecccCccCcEEEecC
Q psy5837 144 VIRNGMIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 144 VlR~g~~~~I~~~dLvvGDIV~L~~ 168 (181)
|.-||+.. .+...|.+||.|.+.-
T Consensus 28 V~VNg~~~-~~~~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 28 VWLNGSCA-KASKEVKAGDTISLHY 51 (92)
T ss_dssp CEETTEEC-CTTCBCCTTCEEEECC
T ss_pred EEECCEEc-CCCCCcCCCCEEEEEe
Confidence 44588865 5667899999998864
No 65
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=20.88 E-value=1.5e+02 Score=25.32 Aligned_cols=41 Identities=17% Similarity=0.233 Sum_probs=25.7
Q ss_pred ccccceEEECCEEEEEecccCccCcEEEecCCCEecCcEEEee
Q psy5837 138 NHRSVDVIRNGMIYVEQWKDLKVGDIVKVYNNSFFPGDLMVLS 180 (181)
Q Consensus 138 n~~~~~VlR~g~~~~I~~~dLvvGDIV~L~~Gd~vPAD~~LL~ 180 (181)
....++++.+-....+...+=.+ .|.+..|+.++||.+++.
T Consensus 237 ~~~GV~v~~~~~V~~i~~~~~~~--~v~l~dG~~i~aD~Vv~a 277 (493)
T 1m6i_A 237 RREGVKVMPNAIVQSVGVSSGKL--LIKLKDGRKVETDHIVAA 277 (493)
T ss_dssp HTTTCEEECSCCEEEEEEETTEE--EEEETTSCEEEESEEEEC
T ss_pred HhcCCEEEeCCEEEEEEecCCeE--EEEECCCCEEECCEEEEC
Confidence 33456666665555554322011 367788999999999875
No 66
>3aqy_A Beta-1,3-glucan-binding protein; beta-sandwich, immune receptor, sugar bindi protein; 1.58A {Plodia interpunctella} PDB: 3aqz_A* 3aqx_A* 2rqe_A
Probab=20.82 E-value=67 Score=22.36 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=16.9
Q ss_pred ECCEEEEEe-cccCccCcEEEe
Q psy5837 146 RNGMIYVEQ-WKDLKVGDIVKV 166 (181)
Q Consensus 146 R~g~~~~I~-~~dLvvGDIV~L 166 (181)
++|+|.--. --.|++||+|+.
T Consensus 56 ~~GrW~~~d~~~~lk~GD~i~Y 77 (106)
T 3aqy_A 56 KEGRWTFRDRNVKLKLGDKIYF 77 (106)
T ss_dssp BTTEEEEEECSCCCCTTCEEEE
T ss_pred cCCEEEEECCceEeCCCCEEEE
Confidence 689998555 569999999875
No 67
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=20.32 E-value=1.2e+02 Score=23.03 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=20.3
Q ss_pred cceEEE--CC--EEEEEecccCccCcEEEecC
Q psy5837 141 SVDVIR--NG--MIYVEQWKDLKVGDIVKVYN 168 (181)
Q Consensus 141 ~~~VlR--~g--~~~~I~~~dLvvGDIV~L~~ 168 (181)
...+.. +| +...+++.||.+||.|.+..
T Consensus 77 ~~lt~~~~~g~~~~~w~~a~eLk~GD~v~~~~ 108 (199)
T 1am2_A 77 PLLCLVDVAGVPTLLWKLIDEIKPGDYAVIQR 108 (199)
T ss_dssp EEEEEEEETTEEEEEEEEGGGCCTTCEEEEEG
T ss_pred EEEEeccCCCccceeEEEhhHCCCCCEEEECC
Confidence 344444 45 44668999999999999854
No 68
>1te7_A Hypothetical UPF0267 protein YQFB; alpha + beta, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: b.122.1.7
Probab=20.26 E-value=60 Score=22.15 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=16.0
Q ss_pred cCccCcEEEe--cCCCEecCcEEEe
Q psy5837 157 DLKVGDIVKV--YNNSFFPGDLMVL 179 (181)
Q Consensus 157 dLvvGDIV~L--~~Gd~vPAD~~LL 179 (181)
..+|||++.+ ..++..-|.+.+.
T Consensus 32 ~~~~Gd~~~v~~~~~~~~~~~i~vt 56 (103)
T 1te7_A 32 HFKTGDVLRVGRFEDDGYFCTIEVT 56 (103)
T ss_dssp CCCTTSEEEEEETTTEEEEEEEEEE
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEE
Confidence 5899999988 5555555665554
Done!